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From: zaluzec-at-aaem.amc.anl.gov
Date: Sat, 1 Jan 2011 09:04:45 -0600
Subject: [Microscopy] Administrivia: Happy New Year 2011

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Happy New Year Colleagues;

Welcome to the 19th year of operation of the Microscopy ListServer
a free service to the world wide microscopy community, sponsored
jointly by your Friendly Neighborhood SysOp and the Microscopy Society
of America.

It was productive year for all of us. During 2010, the ListServer
delivered 1926 messages to over 3000 subscribers around the world,
with minimal hassels (that I know about). For those of you that are
statistics junkies this year you generated 460+ Gb of Email traffic and over
5.8 Million Email messages were sent out this year by my tired little server.
You don't want to know how much Junk Mail and spam has been filtered out.


The complete Microscopy ListServer Archives for 2010-1993 (~ are on-line at

http://www.microscopy.com.

A couple of final reminders:

If you leave on vacation/holiday use the on-line form to UNSUBSCRIBE
your Email address from the listserver. The out-of-office / on-vacation
autoreply messages are a real nuisance to posters.

As always if you have questions about suitability of postings or
are having problems, feel free to contact me at (zaluzec-at-microscopy.com)

Cheers,

Nestor
Your Friendly Neighborhood SysOp


==============================Original Headers==============================
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12, 22 -- From: "Nestor J. Zaluzec" {zaluzec-at-aaem.amc.anl.gov}
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From: mike.bode-at-resaltatech.com
Date: Sat, 1 Jan 2011 12:45:21 -0600
Subject: [Microscopy] Administrivia: Happy New Year 2011

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


-----Original Message-----
X-from: Confocal Microscopy List [mailto:CONFOCALMICROSCOPY-at-LISTS.UMN.EDU] On Behalf Of Teng-Leong Chew
Sent: Saturday, January 01, 2011 3:16 AM
To: CONFOCALMICROSCOPY-at-LISTS.UMN.EDU

Thank you, Nestor, and a Happy New Year 2011 to you, too.

My I suggest that all participants at this list server silently give Nestor
a big hand for keeping it alive and a valuable resource to everybody (while
keeping the spam to a minimum)?

Thanks, Nestor.

Mike
---
Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com





-----Original Message-----
X-from: zaluzec-at-aaem.amc.anl.gov [mailto:zaluzec-at-aaem.amc.anl.gov]
Sent: Saturday, January 01, 2011 8:15 AM
To: mike.bode-at-resaltatech.com

Happy New Year Colleagues;

Welcome to the 19th year of operation of the Microscopy ListServer
a free service to the world wide microscopy community, sponsored
jointly by your Friendly Neighborhood SysOp and the Microscopy Society
of America.

It was productive year for all of us. During 2010, the ListServer
delivered 1926 messages to over 3000 subscribers around the world,
with minimal hassels (that I know about). For those of you that are
statistics junkies this year you generated 460+ Gb of Email traffic and
over
5.8 Million Email messages were sent out this year by my tired little
server.
You don't want to know how much Junk Mail and spam has been filtered out.


The complete Microscopy ListServer Archives for 2010-1993 (~ are on-line
at

http://www.microscopy.com.

A couple of final reminders:

If you leave on vacation/holiday use the on-line form to UNSUBSCRIBE
your Email address from the listserver. The out-of-office / on-vacation
autoreply messages are a real nuisance to posters.

As always if you have questions about suitability of postings or
are having problems, feel free to contact me at (zaluzec-at-microscopy.com)

Cheers,

Nestor
Your Friendly Neighborhood SysOp


==============================Original Headers==============================
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==============================Original Headers==============================
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From: kraftpiano-at-gmail.com
Date: Mon, 3 Jan 2011 14:34:43 -0600
Subject: [Microscopy] Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings everyone, and happy new year!

I was just working with a MetroCal (I think that's how it's spelled)
calibration wafer in an SEM, and I noticed that there is quite a bit
of dust on it. Is there a safe and effective way to clean a printed
silicon wafer which won't do any damage to it?

--Justin A. Kraft

--
"America believes in education; the average professor earns more money
in a year than a professional athlete earns in a whole week." Evan
Esar

==============================Original Headers==============================
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4, 30 -- Subject: Cleaning silicon wafers
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From: kenconverse-at-qualityimages.biz
Date: Mon, 3 Jan 2011 16:41:57 -0600
Subject: [Microscopy] Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Justin,
I looked on Metrocal's website and didn't find anything on silicon. Is it
perhaps from Geller? Anyway, if you can find the actual manufacturer, there
should be cleaning instructions available online.

If not, items on silicon wafers are actually pretty hardy if you don't
physically scratch them. A duster, for starters, may take care of the dust.
Is it mounted on a stub? Do you know what it's mounted with? Organic
solvents (alcohols, acetone) shouldn't hurt the silicon or metallization
(usually Al, sometimes Au) followed by a duster. The mounting material is
more likely to present a problem than the wafer itself.

Ken Converse
owner


QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
Fax 207-647-2688
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: kraftpiano-at-gmail.com [mailto:kraftpiano-at-gmail.com]
Sent: Monday, January 03, 2011 3:38 PM
To: kenconverse-at-qualityimages.biz

Greetings everyone, and happy new year!

I was just working with a MetroCal (I think that's how it's spelled)
calibration wafer in an SEM, and I noticed that there is quite a bit
of dust on it. Is there a safe and effective way to clean a printed
silicon wafer which won't do any damage to it?

--Justin A. Kraft

--
"America believes in education; the average professor earns more money
in a year than a professional athlete earns in a whole week." Evan
Esar

==============================Original Headers==============================
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4, 30 -- Subject: Cleaning silicon wafers
4, 30 -- From: Justin Kraft {kraftpiano-at-gmail.com}
4, 30 -- To: microscopy-at-microscopy.com
4, 30 -- Content-Type: text/plain; charset=ISO-8859-1
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==============================Original Headers==============================
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From: pitrone-at-mpi-cbg.de
Date: Mon, 3 Jan 2011 18:33:15 -0600
Subject: [Microscopy] viaWWW: REMINDER: Microscopist/Imaging-specialist position/s open

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
---------------------------------------------------------------------------
Remember this posting is most likely not from a Subscriber, so when replying
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Email: pitrone-at-mpi-cbg.de
Name: Peter Pitrone

Organization: Max Planck Institute for Molecular Cell Biology and Genetics

Title-Subject: [Filtered] REMINDER:
Microscopist/Imaging-specialist position/s open
immediately: MPI-CBG Light Microscopy Facility in
Dresden, Germany

Message: Dear friends of microscopy and imaging,

We are very actively searching for 2
microscopists / imaging specialists to join our
light microscopy facility team with immediate
effect.

see:
http://www.mpi-cbg.de/jobs/jobs-at-the-mpi-cbg/microscopistsimaging-specialists.html

In case of any questions, please feel free to contact us: peychl-at-mpi-cbg.de

Please pass on the advert to anyone who you think might be interested.

Good luck to any and all who apply!!

Peter Pitrone

------------------------------------------------------------

Full Text of advert follows:

The Max Planck Institute of Molecular Cell
Biology and Genetics (MPI-CBG) in Dresden is
seeking motivated
Microscopists/Imaging Specialists, to work in its
Light Microscopy Facility (LMF).

The LMF is a large core facility enabling
different aspects of MPI-CBG researcherís imaging
projects including: design of imaging
experiments, choice of and training on suitable
imaging systems, and image processing,
visualisation and analysis. The LMF is part of a
network of core imaging facilities on the Dresden
Biopolis campus (see https://ifn.mpi-cbg.de.)
Light microscopy is one of the key methods of the
MPI-CBG. The LMF provides more than 20 advanced
imaging systems including laser scanning confocal
microscopy, two-photon microscopy, wide-field
microscopy, TIRF, SPIM and PALM/STORM. A super
resolution structured illumination (SIM) system
will be installed in 2011. The LMF team supports
approximately 270 users from over 35 countries.
More than 40 000 hours of instrument time is
booked annually. The working language of the
MPI-CBG is English.

Requirements:
We are seeking 1-2 candidates who are proactive
and service-oriented team players with excellent
interpersonal and organizational skills and who
enjoy helping people. They should have a first
degree (B.Sc.) and preferably also a doctorate
degree (Ph.D.) in biology or physics/optics, be
fluent in English and be ready to help scientists
with both trivial and advanced aspects of light
microscopy imaging projects. Experience in basic
as well as advanced light microscopy is required
and some experience with image analysis would be
a strong plus. The successful candidate(s) should
be ready to serve in a dynamic international
multi-user environment whereby four basic areas
of service must be covered: a) scientific support
of imaging projects, b) implementation of new
imaging technologies, c) maintenance and service
of current imaging systems and d) training and
teaching light microscopy. Ideally, the
candidate(s) should have experience working in an
imaging facility.

The positions are available immediately. The
initial contract is for 2 years. Compensation
will depend on the qualifications and experience
of the candidate. The Max Planck Society is
committed to employ more disabled persons. The
application of disabled persons is strongly
encouraged. The Max Planck Society is committed
to increase the number of female scientists.
Women are particularly encouraged to apply.

For informal inquiries, please contact the leader
of the LMF, Dr. Jan Peychl, email:
peychl-at-mpi-cbg.de

If you wish to apply for this position, please
send your CV, letter of application/motivation
and the contact information of three referees to:

Max Planck Institute
of Molecular Cell Biology and Genetics
Code: 2010-LMF-4100
Pfotenhauerstr. 108
01307 Dresden
Germany
or by email: 2010-LMF-4100-at-mpi-cbg.de

Deadline for the applications is January 7, 2011


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From: DUNHAMDJ-at-uwec.edu
Date: Tue, 4 Jan 2011 11:24:05 -0600
Subject: [Microscopy] Available Position: Analytical Scientist

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



Analytical Scientist

The University of Wisconsin Eau Claire is seeking applicants for an Analytical Scientist position in the Materials Science Center, an interdisciplinary analytical facility, specializing in materials characterization.  This is a full-time professional academic staff position beginning July 1st 2011.  Potential applicants may obtain a complete position description and application requirements at http://www.uwec.edu/Matsci/position.html. Women, minorities, individuals with disabilities and veterans are encouraged to apply.  Criminal background checks are required prior to employment.  Review of completed applications will commence January 14th, 2011 and continue until the position is filled.

The scientist will help manage instrumentation associated with the Materials Science Center, an interdisciplinary analytical facility that incorporates an array of state-of-the-art instrumentation specializing in materials characterization and surface science.  Instrumentation within the Center includes a 200 keV Transmission Electron Microscope, Scanning Electron Microscopes with Energy Dispersive X-ray Microanalyzer, a High Resolution Inductively Coupled Plasma - Mass Spectrometer, X-ray Photoelectron Spectrometer, Scanning Tunneling Microscope, 2 X-ray Fluorescence Spectrometers, X-ray Diffractometer, Atomic Force Microscopes, Scanning Auger Nanoprobe and a Micro-FTIR.  The scientist will assist with the development of the Electron Microscopy facility, and will be involved in all aspects of technique development, instrument control and maintenance, and other aspects of running a professional laboratory.  The scientist will be responsible for instrument maintenance, repair, sample preparation and analysis in other high vacuum applications, such as XRD, XRF, XPS and STM utilized by faculty associated with the Materials Science Center.  Precise responsibilities will vary according to research priorities within the Materials Science Center.  The scientist is encouraged to participate in collaborative research with faculty, undergraduates and local industry, as well as other scholarly activities.  The scientist may be asked to teach some instrument specific courses.


-----------------------------------------------------------------------------------
Dr. Doug Dunham
Director, Materials Science Center
University of Wisconsin-Eau Claire
Phillips Hall, Suite 177
105 Garfield Avenue
Eau Claire, WI 54702-4004
tel:  715-836-5312   fax:  715-836-3556



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From: aheath-at-ufl.edu
Date: Tue, 4 Jan 2011 19:13:25 -0600
Subject: [Microscopy] viaWWW: SEM-- Quantomix Wet SEM capsules?

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Email: aheath-at-ufl.edu
Name: Ann Heatherington

Organization: Dept. of Geological Sciences, University of Florida

Title-Subject: [Filtered] SEM-- Quantomix Wet SEM capsules?

Message: Hello-- Does anyone have any experience with the Wet SEM
capsules by Quantomix?


We have a Zeiss EVO MA 10 SEM and every once in a while have someone
interested in looking at a wet sample (gels, sediments, etc.) This
looked like a possible economical way of gaining wet sample analysis
capability, and I would like to hear opinions from someone who has
actually used it. The vendor will not supply a customer list.


Thank you,
Ann Heatherington


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From: kintzjd-at-rocketmail.com
Date: Tue, 4 Jan 2011 19:14:08 -0600
Subject: [Microscopy] viaWWW: Repair or replace EDS detector?

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Email: kintzjd-at-rocketmail.com
Name: Joe Kintz

Organization: Stress Engineering Services, Inc.

Title-Subject: [Filtered] Repair or replace EDS detector?

Message: Our EDAX-brand Sapphire Si(Li) EDS detector probably has a
crack or hole in its super ultra thin window and will probably have
to be sent to EDAX for repair. Is this a good time to consider
upgrading to a silicon drift detector? Using liquid nitrogen is not
a problem for us but, if we can improve EDS performance at a
reasonable price compared to repairing our existing Si(Li) detector,
this would seem to make sense. We're also using EDAX's EBSD system,
so we'd like to continue using their Genesis EDS software.

If this would be a good time to upgrade, what is the concensus about
the silicon drift detectors (SDD)? Are they better across the board
than the Si(Li) detectors, or would we be giving up some aspect of
performance? Who makes the best SDD's that will work with EDAX EDS
systems?

Thanks in advance for your assistance.

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From: michael.anderson-at-nist.gov
Date: Wed, 5 Jan 2011 09:17:09 -0600
Subject: [Microscopy] Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
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Justin,

I would agree with Ken on the use of a compressed gas as a first attempt at cleaning your wafer, but I would actually avoid those tetrafluoroethane dusters. It's been my experience that they can leave a film on the surface of the wafer. If you have a spare piece of polished silicon wafer hanging around you could test the duster on it to see if it leaves a film. I prefer using high purity dry nitrogen from a gas cylinder, but I have also used the compressed CO2 dusters you can find at office supply stores with good results.

Since it looks like this wafer is etched silicon, you should be safe using a solvent if there is anything stuck on it, but I would stress that you should contact the manufacturer (Metroboost*) to make sure that they don't have some kind of a coating on it or something that would be damaged by a particular solvent. A good general choice to start would actually be deionized water, since the etch process to make the wafer probably employed that anyway. The procedure that we used during my semiconductor courses was to rinse the chip or wafer with DI water and then blow-dry it with dry nitrogen. It helps if you hold the wafer near vertical with one end resting on a lint-free paper towel and then blow the residual solvent towards the towel starting from the top of the wafer and working your way down. This generally leaves a clean, lint free, surface.

Hope that helps!

Mike Anderson

*Comments made in this correspondence represent the opinion of the author and should not be construed as endorsement or recommendation by NIST. Likewise, any mention of commercial products does not imply recommendation or endorsement by NIST.


-----Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
Sent: Monday, January 03, 2011 5:51 PM
To: Anderson, Michael

Justin,
I looked on Metrocal's website and didn't find anything on silicon. Is it
perhaps from Geller? Anyway, if you can find the actual manufacturer, there
should be cleaning instructions available online.

If not, items on silicon wafers are actually pretty hardy if you don't
physically scratch them. A duster, for starters, may take care of the dust.
Is it mounted on a stub? Do you know what it's mounted with? Organic
solvents (alcohols, acetone) shouldn't hurt the silicon or metallization
(usually Al, sometimes Au) followed by a duster. The mounting material is
more likely to present a problem than the wafer itself.

Ken Converse
owner


QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
Fax 207-647-2688
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: kraftpiano-at-gmail.com [mailto:kraftpiano-at-gmail.com]
Sent: Monday, January 03, 2011 3:38 PM
To: kenconverse-at-qualityimages.biz

Greetings everyone, and happy new year!

I was just working with a MetroCal (I think that's how it's spelled)
calibration wafer in an SEM, and I noticed that there is quite a bit
of dust on it. Is there a safe and effective way to clean a printed
silicon wafer which won't do any damage to it?

--Justin A. Kraft

--
"America believes in education; the average professor earns more money
in a year than a professional athlete earns in a whole week." Evan
Esar

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30, 28 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
30, 28 -- Date: Wed, 5 Jan 2011 10:16:59 -0500
30, 28 -- Subject: RE: [Microscopy] RE: Cleaning silicon wafers
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From: mcintoshgreece-at-yahoo.com
Date: Wed, 5 Jan 2011 13:44:50 -0600
Subject: [Microscopy] Use Tape: Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Justin,

Google these topics for alternate ideas on removing contamination:

Extraction replica techniques (Cellulose Acetate)
Semiconductor Processing Tape ("Blue Tack tape")


http://www.lpi.usra.edu/meetings/lpsc2007/pdf/1920.pdf

http://www.semicorp.com/articles/sticky-issues-with-semiconductor-processing-tape.html


John McIntosh



--- On Wed, 1/5/11, michael.anderson-at-nist.gov {michael.anderson-at-nist.gov} wrote:

} From: michael.anderson-at-nist.gov {michael.anderson-at-nist.gov}
} Subject: [Microscopy] Cleaning silicon wafers
} To: mcintoshgreece-at-yahoo.com
} Date: Wednesday, January 5, 2011, 10:23 AM
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The
} Microscopy Society of America
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} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Justin,
}
} I would agree with Ken on the use of a compressed gas as a
} first attempt at cleaning your wafer, but I would actually
} avoid those tetrafluoroethane dusters.  It's been my
} experience that they can leave a film on the surface of the
} wafer.  If you have a spare piece of polished silicon
} wafer hanging around you could test the duster on it to see
} if it leaves a film.  I prefer using high purity dry
} nitrogen from a gas cylinder, but I have also used the
} compressed CO2 dusters you can find at office supply stores
} with good results. 
}
} Since it looks like this wafer is etched silicon, you
} should be safe using a solvent if there is anything stuck on
} it, but I would stress that you should contact the
} manufacturer (Metroboost*) to make sure that they don't have
} some kind of a coating on it or something that would be
} damaged by a particular solvent. A good general choice to
} start would actually be deionized water, since the etch
} process to make the wafer probably employed that
} anyway.  The procedure that we used during my
} semiconductor courses was to rinse the chip or wafer with DI
} water and then blow-dry it with dry nitrogen.  It helps
} if you hold the wafer near vertical with one end resting on
} a lint-free paper towel and then blow the residual solvent
} towards the towel starting from the top of the wafer and
} working your way down.  This generally leaves a clean,
} lint free, surface.
}
} Hope that helps!
}
} Mike Anderson

} Justin,
} I looked on Metrocal's website and didn't find anything on
} silicon.  Is it
} perhaps from Geller?  Anyway, if you can find the
} actual manufacturer, there
} should be cleaning instructions available online.
}
} If not, items on silicon wafers are actually pretty hardy
} if you don't
} physically scratch them.  A duster, for starters, may
} take care of the dust.
} Is it mounted on a stub?  Do you know what it's
} mounted with?  Organic
} solvents (alcohols, acetone) shouldn't hurt the silicon or
} metallization
} (usually Al, sometimes Au) followed by a duster.  The
} mounting material is
} more likely to present a problem than the wafer itself.
}
} Ken Converse
} owner
}
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME  04009
} 207-647-4348
} Fax 207-647-2688
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}

} Greetings everyone, and happy new year!
}
} I was just working with a MetroCal (I think that's how it's
} spelled)
} calibration wafer in an SEM, and I noticed that there is
} quite a bit
} of dust on it.  Is there a safe and effective way to
} clean a printed
} silicon wafer which won't do any damage to it?
}
} --Justin A. Kraft
}





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From: shishkov-at-HELIX.MGH.HARVARD.EDU
Date: Wed, 5 Jan 2011 14:03:24 -0600
Subject: [Microscopy] RE: Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Check this product as well:
http://www.vatran.com/dryice.html

--
Milen Shishkov, Ph.D.
Wellman Center for Photomedicine
Massachusetts General Hospital
Harvard Medical School

Address: MGH
BAR 712
50 Blossom St.
Boston, MA 02114
Phone: (617) 726 1589
Fax: (617) 643 9208




The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
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dispose of the e-mail.



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From: FMonson-at-wcupa.edu
Date: Wed, 5 Jan 2011 16:51:39 -0600
Subject: [Microscopy] RE: Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Why not try Critical Point Drying (CPD)??? Prices range from $5k (manual) to - heading toward - $100k for automation, cleanroom, big wafers.

URL: http://lib.semi.ac.cn:8080/tsh/dzzy/wsqk/SPIE/vol3880/3880-51.pdf

Check Tousimis: http://tousimis.com/critical_point_dryers/critical_point_dryer.html

We have a CPD from tousimis (815 AutoSamDri, Series A)

Pricey, but automatic and based on PhysChem. As tousimis makes big ones for complete mems wafers, plain silicon chips (i.e. 5 x 5mm) are not a problem. Biggest problem is, once retrieved in open lab, how does one protect the chip from instant contamination. My followup would be plasma cleaning to clear off any carbon deposited between CPD and final use.

If all were done in clean room or gloved environment, then CPD - despite cost - may be the way to go both before and after processing the wafer). I would strongly recommend enthusiastic consideration.

Cheers,

Fred Monson

P.S. I'm a biologist first, so I am poking my head into an other's place. Thus, I realize the value of advice may appear depreciated by background. Howsoever, please consider the fact that since we messy organic microscopic investigators spend our lives looking at artifact and gathering together to grant each other various levels of group reality for each and every microscopic finding, we are also those who strive most eagerly for the purity of mere 3D problems. To save an ultrastructural projection on the surface of a cell, there is NOTHING like perfect CPD.

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: shishkov-at-HELIX.MGH.HARVARD.EDU [mailto:shishkov-at-HELIX.MGH.HARVARD.EDU]
Sent: Wednesday, January 05, 2011 3:11 PM
To: Monson, Frederick

Check this product as well:
http://www.vatran.com/dryice.html

--
Milen Shishkov, Ph.D.
Wellman Center for Photomedicine
Massachusetts General Hospital
Harvard Medical School

Address: MGH
BAR 712
50 Blossom St.
Boston, MA 02114
Phone: (617) 726 1589
Fax: (617) 643 9208




The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.



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27, 29 -- Subject: RE: [Microscopy] RE: Cleaning silicon wafers
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From: r-holdford-at-ti.com
Date: Wed, 5 Jan 2011 17:49:40 -0600
Subject: [Microscopy] Re: Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I'll just echo what Ken Converse and Mike Anderson have to say
and add my 2 cents' worth. I work with Si wafers (patterned and
unpatterned) everyday. I also have an SEM standard similar to
the one you are using. I usually clean mine (after rapping the
knuckles of the person who got it dirty) first with dry N2. If
you have some stubborn dust particles, a short sonication in warm
DI or distilled water should do it. One of those little brushes
that photographers used to use to get dust off negatives would be
good also, since they neutralize the static charges that make for
some tenacious particles. I have deionizers all over the place,
so I use those. After all the effort you put into cleaning the
standard, store it in as dust-free an atmosphere and container as
you have available. I store mine in the metal box it came in, in
a dry nitrogen cabinet.

If some ham-handed user has stuck their finger to it, that's more
difficult. CO2 snow is a wizard for removing organic
contaminants such as finger oils but not everybody has access to
a unit. In this case (if the stub attachment will stand it) I
would try reagent-grade (or fab-grade) acetone, using it in the
manner Mike suggests. I would follow this with some reagent- or
fab-grade methanol as sometimes acetone can leave a residue.

On 1/5/11 9:17 AM, michael.anderson-at-nist.gov wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} ----------------------------------------------------------------------------
}
} Justin,
}
} I would agree with Ken on the use of a compressed gas as a first attempt at cleaning your wafer, but I would actually avoid those tetrafluoroethane dusters. It's been my experience that they can leave a film on the surface of the wafer. If you have a spare piece of polished silicon wafer hanging around you could test the duster on it to see if it leaves a film. I prefer using high purity dry nitrogen from a gas cylinder, but I have also used the compressed CO2 dusters you can find at office supply stores with good results.
}
} Since it looks like this wafer is etched silicon, you should be safe using a solvent if there is anything stuck on it, but I would stress that you should contact the manufacturer (Metroboost*) to make sure that they don't have some kind of a coating on it or something that would be damaged by a particular solvent. A good general choice to start would actually be deionized water, since the etch process to make the wafer probably employed that anyway. The procedure that we used during my semiconductor courses was to rinse the chip or wafer with DI water and then blow-dry it with dry nitrogen. It helps if you hold the wafer near vertical with one end resting on a lint-free paper towel and then blow the residual solvent towards the towel starting from the top of the wafer and working your way down. This generally leaves a clean, lint free, surface.
}
} Hope that helps!
}
} Mike Anderson
}
} *Comments made in this correspondence represent the opinion of the author and should not be construed as endorsement or recommendation by NIST. Likewise, any mention of commercial products does not imply recommendation or endorsement by NIST.
}
}
} -----Original Message-----
} X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
} Sent: Monday, January 03, 2011 5:51 PM
} To: Anderson, Michael
} Subject: [Microscopy] RE: Cleaning silicon wafers
}
}
}
}
} ----------------------------------------------------------------------------
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} ----------------------------------------------------------------------------
}
} Justin,
} I looked on Metrocal's website and didn't find anything on silicon. Is it
} perhaps from Geller? Anyway, if you can find the actual manufacturer, there
} should be cleaning instructions available online.
}
} If not, items on silicon wafers are actually pretty hardy if you don't
} physically scratch them. A duster, for starters, may take care of the dust.
} Is it mounted on a stub? Do you know what it's mounted with? Organic
} solvents (alcohols, acetone) shouldn't hurt the silicon or metallization
} (usually Al, sometimes Au) followed by a duster. The mounting material is
} more likely to present a problem than the wafer itself.
}
} Ken Converse
} owner
}
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} Fax 207-647-2688
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: kraftpiano-at-gmail.com [mailto:kraftpiano-at-gmail.com]
} Sent: Monday, January 03, 2011 3:38 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] Cleaning silicon wafers
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Greetings everyone, and happy new year!
}
} I was just working with a MetroCal (I think that's how it's spelled)
} calibration wafer in an SEM, and I noticed that there is quite a bit
} of dust on it. Is there a safe and effective way to clean a printed
} silicon wafer which won't do any damage to it?
}
} --Justin A. Kraft
}

--
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Becky Holdford (r-holdford-at-ti.com)
214-567-0360
SC Packaging FA
Texas Instruments, Inc.
13536 N. Central Expressway MS 940
Dallas, TX 75243
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


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From: oshel1pe-at-cmich.edu
Date: Thu, 6 Jan 2011 07:09:46 -0600
Subject: [Microscopy] Re: Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

No special unit is needed for CO2 snow, just a tank of Clean! CO2.
Either remove any hose, or attach the tank hose to something weighty
- any block of metal with a threaded hole into which the hose can be
screwed, or the like. Something to hold the hose firmly so it doesn't
whip around. Turn on the tank, and the expanding CO2 makes snow. (I
used to do this into a pillow case for sending samples from the
Arctic.) This worked with both regular and siphon CO2 tanks.
Now, I use the exhaust outlet (not "Vent") of our Polaron bomb CPD if
I need snow. (Because of the weightiness of the CPD.)
I suggest food grade CO2, but an absolutely dry grade may be needed
for your application.

Phil

} I'll just echo what Ken Converse and Mike Anderson have to say
} and add my 2 cents' worth. I work with Si wafers (patterned and
} unpatterned) everyday. I also have an SEM standard similar to
} the one you are using. I usually clean mine (after rapping the
} knuckles of the person who got it dirty) first with dry N2. If
} you have some stubborn dust particles, a short sonication in warm
} DI or distilled water should do it. One of those little brushes
} that photographers used to use to get dust off negatives would be
} good also, since they neutralize the static charges that make for
} some tenacious particles. I have deionizers all over the place,
} so I use those. After all the effort you put into cleaning the
} standard, store it in as dust-free an atmosphere and container as
} you have available. I store mine in the metal box it came in, in
} a dry nitrogen cabinet.
}
} If some ham-handed user has stuck their finger to it, that's more
} difficult. CO2 snow is a wizard for removing organic
} contaminants such as finger oils but not everybody has access to
} a unit. In this case (if the stub attachment will stand it) I
} would try reagent-grade (or fab-grade) acetone, using it in the
} manner Mike suggests. I would follow this with some reagent- or
} fab-grade methanol as sometimes acetone can leave a residue.
}
} On 1/5/11 9:17 AM, michael.anderson-at-nist.gov wrote:
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Justin,
} }
} } I would agree with Ken on the use of a compressed gas as a first
} } attempt at cleaning your wafer, but I would actually avoid those
} } tetrafluoroethane dusters. It's been my experience that they can
} } leave a film on the surface of the wafer. If you have a spare
} } piece of polished silicon wafer hanging around you could test the
} } duster on it to see if it leaves a film. I prefer using high
} } purity dry nitrogen from a gas cylinder, but I have also used the
} } compressed CO2 dusters you can find at office supply stores with
} } good results.
} }
} } Since it looks like this wafer is etched silicon, you should be
} } safe using a solvent if there is anything stuck on it, but I would
} } stress that you should contact the manufacturer (Metroboost*) to
} } make sure that they don't have some kind of a coating on it or
} } something that would be damaged by a particular solvent. A good
} } general choice to start would actually be deionized water, since
} } the etch process to make the wafer probably employed that anyway.
} } The procedure that we used during my semiconductor courses was to
} } rinse the chip or wafer with DI water and then blow-dry it with dry
} } nitrogen. It helps if you hold the wafer near vertical with one
} } end resting on a lint-free paper towel and then blow the residual
} } solvent towards the towel starting from the top of the wafer and
} } working your way down. This generally leaves a clean, lint free,
} } surface.
} }
} } Hope that helps!
} }
} } Mike Anderson
} }
} } *Comments made in this correspondence represent the opinion of the
} } author and should not be construed as endorsement or recommendation
} } by NIST. Likewise, any mention of commercial products does not
} } imply recommendation or endorsement by NIST.
} }
} }
} } -----Original Message-----
} } X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
} } Sent: Monday, January 03, 2011 5:51 PM
} } To: Anderson, Michael
} } Subject: [Microscopy] RE: Cleaning silicon wafers
} }
} }
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Justin,
} } I looked on Metrocal's website and didn't find anything on silicon. Is it
} } perhaps from Geller? Anyway, if you can find the actual manufacturer, there
} } should be cleaning instructions available online.
} }
} } If not, items on silicon wafers are actually pretty hardy if you don't
} } physically scratch them. A duster, for starters, may take care of the dust.
} } Is it mounted on a stub? Do you know what it's mounted with? Organic
} } solvents (alcohols, acetone) shouldn't hurt the silicon or metallization
} } (usually Al, sometimes Au) followed by a duster. The mounting material is
} } more likely to present a problem than the wafer itself.
} }
} } Ken Converse
} } owner
} }
} }
} } QUALITY IMAGES
} } Servicing Scanning Electron Microscopes
} } Since 1981
} } 474 So. Bridgton Rd.
} } Bridgton, ME 04009
} } 207-647-4348
} } Fax 207-647-2688
} } kenconverse-at-qualityimages.biz
} } qualityimages.biz
} }
} }
} } -----Original Message-----
} } X-from: kraftpiano-at-gmail.com [mailto:kraftpiano-at-gmail.com]
} } Sent: Monday, January 03, 2011 3:38 PM
} } To: kenconverse-at-qualityimages.biz
} } Subject: [Microscopy] Cleaning silicon wafers

} } Greetings everyone, and happy new year!
} }
} } I was just working with a MetroCal (I think that's how it's spelled)
} } calibration wafer in an SEM, and I noticed that there is quite a bit
} } of dust on it. Is there a safe and effective way to clean a printed
} } silicon wafer which won't do any damage to it?
} }
} } --Justin A. Kraft
} }
}
} --
} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
} Becky Holdford (r-holdford-at-ti.com)
} 214-567-0360
} SC Packaging FA
} Texas Instruments, Inc.
} 13536 N. Central Expressway MS 940
} Dallas, TX 75243
} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: r-holdford-at-ti.com
Date: Thu, 6 Jan 2011 14:10:41 -0600
Subject: [Microscopy] Re: Re: Cleaning silicon wafers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Phil: thanks bunches for this cool (pun intended) tip!

On 1/6/11 7:09 AM, oshel1pe-at-cmich.edu wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} No special unit is needed for CO2 snow, just a tank of Clean! CO2.
} Either remove any hose, or attach the tank hose to something weighty
} - any block of metal with a threaded hole into which the hose can be
} screwed, or the like. Something to hold the hose firmly so it doesn't
} whip around. Turn on the tank, and the expanding CO2 makes snow. (I
} used to do this into a pillow case for sending samples from the
} Arctic.) This worked with both regular and siphon CO2 tanks.
} Now, I use the exhaust outlet (not "Vent") of our Polaron bomb CPD if
} I need snow. (Because of the weightiness of the CPD.)
} I suggest food grade CO2, but an absolutely dry grade may be needed
} for your application.
}
} Phil
}
} } I'll just echo what Ken Converse and Mike Anderson have to say
} } and add my 2 cents' worth. I work with Si wafers (patterned and
} } unpatterned) everyday. I also have an SEM standard similar to
} } the one you are using. I usually clean mine (after rapping the
} } knuckles of the person who got it dirty) first with dry N2. If
} } you have some stubborn dust particles, a short sonication in warm
} } DI or distilled water should do it. One of those little brushes
} } that photographers used to use to get dust off negatives would be
} } good also, since they neutralize the static charges that make for
} } some tenacious particles. I have deionizers all over the place,
} } so I use those. After all the effort you put into cleaning the
} } standard, store it in as dust-free an atmosphere and container as
} } you have available. I store mine in the metal box it came in, in
} } a dry nitrogen cabinet.
} }
} } If some ham-handed user has stuck their finger to it, that's more
} } difficult. CO2 snow is a wizard for removing organic
} } contaminants such as finger oils but not everybody has access to
} } a unit. In this case (if the stub attachment will stand it) I
} } would try reagent-grade (or fab-grade) acetone, using it in the
} } manner Mike suggests. I would follow this with some reagent- or
} } fab-grade methanol as sometimes acetone can leave a residue.
} }
} } On 1/5/11 9:17 AM, michael.anderson-at-nist.gov wrote:
} } } ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } } ----------------------------------------------------------------------------
} } }
} } } Justin,
} } }
} } } I would agree with Ken on the use of a compressed gas as a first
} } } attempt at cleaning your wafer, but I would actually avoid those
} } } tetrafluoroethane dusters. It's been my experience that they can
} } } leave a film on the surface of the wafer. If you have a spare
} } } piece of polished silicon wafer hanging around you could test the
} } } duster on it to see if it leaves a film. I prefer using high
} } } purity dry nitrogen from a gas cylinder, but I have also used the
} } } compressed CO2 dusters you can find at office supply stores with
} } } good results.
} } }
} } } Since it looks like this wafer is etched silicon, you should be
} } } safe using a solvent if there is anything stuck on it, but I would
} } } stress that you should contact the manufacturer (Metroboost*) to
} } } make sure that they don't have some kind of a coating on it or
} } } something that would be damaged by a particular solvent. A good
} } } general choice to start would actually be deionized water, since
} } } the etch process to make the wafer probably employed that anyway.
} } } The procedure that we used during my semiconductor courses was to
} } } rinse the chip or wafer with DI water and then blow-dry it with dry
} } } nitrogen. It helps if you hold the wafer near vertical with one
} } } end resting on a lint-free paper towel and then blow the residual
} } } solvent towards the towel starting from the top of the wafer and
} } } working your way down. This generally leaves a clean, lint free,
} } } surface.
} } }
} } } Hope that helps!
} } }
} } } Mike Anderson
} } }
} } } *Comments made in this correspondence represent the opinion of the
} } } author and should not be construed as endorsement or recommendation
} } } by NIST. Likewise, any mention of commercial products does not
} } } imply recommendation or endorsement by NIST.
} } }
} } }
} } } -----Original Message-----
} } } X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
} } } Sent: Monday, January 03, 2011 5:51 PM
} } } To: Anderson, Michael
} } } Subject: [Microscopy] RE: Cleaning silicon wafers
} } }
} } }
} } }
} } }
} } } ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } } ----------------------------------------------------------------------------
} } }
} } } Justin,
} } } I looked on Metrocal's website and didn't find anything on silicon. Is it
} } } perhaps from Geller? Anyway, if you can find the actual manufacturer, there
} } } should be cleaning instructions available online.
} } }
} } } If not, items on silicon wafers are actually pretty hardy if you don't
} } } physically scratch them. A duster, for starters, may take care of the dust.
} } } Is it mounted on a stub? Do you know what it's mounted with? Organic
} } } solvents (alcohols, acetone) shouldn't hurt the silicon or metallization
} } } (usually Al, sometimes Au) followed by a duster. The mounting material is
} } } more likely to present a problem than the wafer itself.
} } }
} } } Ken Converse
} } } owner
} } }
} } }
} } } QUALITY IMAGES
} } } Servicing Scanning Electron Microscopes
} } } Since 1981
} } } 474 So. Bridgton Rd.
} } } Bridgton, ME 04009
} } } 207-647-4348
} } } Fax 207-647-2688
} } } kenconverse-at-qualityimages.biz
} } } qualityimages.biz
} } }
} } }
} } } -----Original Message-----
} } } X-from: kraftpiano-at-gmail.com [mailto:kraftpiano-at-gmail.com]
} } } Sent: Monday, January 03, 2011 3:38 PM
} } } To: kenconverse-at-qualityimages.biz
} } } Subject: [Microscopy] Cleaning silicon wafers
} } } Greetings everyone, and happy new year!
} } }
} } } I was just working with a MetroCal (I think that's how it's spelled)
} } } calibration wafer in an SEM, and I noticed that there is quite a bit
} } } of dust on it. Is there a safe and effective way to clean a printed
} } } silicon wafer which won't do any damage to it?
} } }
} } } --Justin A. Kraft
} } }
} } --
} } ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
} } Becky Holdford (r-holdford-at-ti.com)
} } 214-567-0360
} } SC Packaging FA
} } Texas Instruments, Inc.
} } 13536 N. Central Expressway MS 940
} } Dallas, TX 75243
} } ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

--
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Becky Holdford (r-holdford-at-ti.com)
214-567-0360
SC Packaging FA
Texas Instruments, Inc.
13536 N. Central Expressway MS 940
Dallas, TX 75243
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


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From: patpxs-at-gmail.com
Date: Thu, 6 Jan 2011 16:23:46 -0600
Subject: [Microscopy] Darkroom Equipment Free to Good Home

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Listers,

The EM Lab at Duke Hospital has gone digital so we have a couple of
darkroom goodies to give away.

Of course, you must pay for the shipping and handling but think of all
the money you'll save!

The items are:

Ilford 2150 RC print processor and 3 boxes which contain one jug of
Ilford developer and one jug of Ilford fixer each. This baby is in
fantastic condition and I even cleaned it so it is all sparkly and
ready to move into your darkroom. You don't even have to kick the
tires, plus we even have the original owners manual.

A lot of film holders for Zeiss, JEOL and maybe Hitachi. Some of
these holders are for the more vintage TEM models.

If you have any questions, please e-mail Andy Kloiber at andykloiber-at-yahoo.com.

I will be on vacation next week so Andy can help you.

First come, first served and all that jazz.

More items to come as we slowly clean the darkroom out.

Enjoy your weekend,

Paula
--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#M251 Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.2091


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From: r.sims-at-auckland.ac.nz
Date: Thu, 6 Jan 2011 18:32:41 -0600
Subject: [Microscopy] viaWWW: JEOL 840 anode cap position

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Email: r.sims-at-auckland.ac.nz
Name: Ritchie Sims

Organization: The University of Auckland

Title-Subject: [Filtered] JEOL 840 anode cap position

Message: Happy New Year

It's been a while since I pulled the anode cap for cleaning, and I
can neither find the part in the manual where it says to use the
upper or lower position for what accelerating voltage nor remember
which height I used.

Can someone remind me which position should be used for 15KV operation?

cheers
Ritchie

ps I can't seem to post in the normal way and our computer guy is on
holiday. Something to do with hidden attachments, I think

Login Host: 130.216.59.18
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From: oshel1pe-at-cmich.edu
Date: Fri, 7 Jan 2011 07:04:45 -0600
Subject: [Microscopy] Re: viaWWW: JEOL 840 anode cap position

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ritchie,

For our 840A with tungsten emitter:
use the upper position for 6kV accelerating voltage and *less*

use the lower position for over 6kV

Arcing occurs/can occur if the upper position is used with kV} 6kV.

Phil

} Email: r.sims-at-auckland.ac.nz
} Name: Ritchie Sims
}
} Organization: The University of Auckland
}
} Title-Subject: [Filtered] JEOL 840 anode cap position
}
} Message: Happy New Year
}
} It's been a while since I pulled the anode cap for cleaning, and I
} can neither find the part in the manual where it says to use the
} upper or lower position for what accelerating voltage nor remember
} which height I used.
}
} Can someone remind me which position should be used for 15KV operation?
}
} cheers
} Ritchie
}
} ps I can't seem to post in the normal way and our computer guy is on
} holiday. Something to do with hidden attachments, I think

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: protrain-at-emcourses.com
Date: Fri, 7 Jan 2011 07:22:36 -0600
Subject: [Microscopy] viaWWW: JEOL 840 anode cap position

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Ritchie

I do not know the exact position of the anode but the "generic" conversion
for a SEM is 1mm for every 2kV anode to cathode distance!

Hope this helps?

On another note I too have had then hidden attachment rejection on several
occasion recently, could there be a problem?

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



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Email: r.sims-at-auckland.ac.nz
Name: Ritchie Sims

Organization: The University of Auckland

Title-Subject: [Filtered] JEOL 840 anode cap position

Message: Happy New Year

It's been a while since I pulled the anode cap for cleaning, and I
can neither find the part in the manual where it says to use the
upper or lower position for what accelerating voltage nor remember
which height I used.

Can someone remind me which position should be used for 15KV operation?

cheers
Ritchie

ps I can't seem to post in the normal way and our computer guy is on
holiday. Something to do with hidden attachments, I think

Login Host: 130.216.59.18
---------------------------------------------------------------------------

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From: r.sims-at-auckland.ac.nz
Date: Fri, 7 Jan 2011 08:05:37 -0600
Subject: [Microscopy] viaWWW: Out-of-Office auto replies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
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Email: r.sims-at-auckland.ac.nz
Name: Ritchie Sims

Organization: The University of Auckland

Title-Subject: [Filtered] Out-of-Office auto replies

Message: Wow!

I got 21 out-of-office auto-replies to my JEOL 840 anode cap
question, and no reply (yet) with information.

I guess I'll get another 21 auto-replies to this one, too.

May I quote the Listserver FAQs?

"2.) DO NOT set your Email Program to automatically reply to all
messages, or to request a return receipt. If either of these are
done, you run the risk of creating an Email loop within the system.
This may result in a message bouncing through the system for several
days, filling up everyone's mail box! "

And it kinda puts people off posting, too.

cheers
Ritchie



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From: patpxs-at-gmail.com
Date: Fri, 7 Jan 2011 11:41:51 -0600
Subject: [Microscopy] Denton Bell Jar

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Listers,

I have found a brand new, still in the box with it's bubblewrap and
packing peanuts, 11.5 inch inner diameter, 0.25 inch side wall Denton
bell jar. I am giving it away, you pay the shipping.

Any takers?

Contact Andy Kloiber at andykloiber-at-yahoo.com

Have a greatr weekend!

Paula

Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#M251 Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.2091


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From: NEERAJG-at-clemson.edu
Date: Fri, 7 Jan 2011 14:16:31 -0600
Subject: [Microscopy] Re: Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Happy New Year Everyone!

I recently read this article about Ernst Ruska and thought of sharing it with the list, many of you may have already read this but it's truly a fascinating read.

http://www.mpg.de/english/illustrationsDocumentation/multimedia/mpResearch/2006/heft03/Electron_Microscopy_Ernst_Ruska.pdf

Best Regards,

Neeraj.


Neeraj V. Gohad, Ph.D.
Postdoctoral Fellow
Okeanos Research Group
Department of Biological Sciences
132 Long Hall
Clemson University
Clemson,SC-29634
Phone: 864-656-3597
Fax: 864-656-0435

Website: http://www.clemson.edu/okeanos   





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From: ron.doole-at-materials.ox.ac.uk
Date: Mon, 10 Jan 2011 07:00:07 -0600
Subject: [Microscopy] 2 TEM positions available at Oxford - UK

Contents Retrieved from Microscopy Listserver Archives
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Two positions are available in electron microscopy at the Department of Materials, University of Oxford, UK:

Departmental Lecturer in Aberration Corrected Electron Microscopy
Grade 8 / Salary £36,715 to £43,840 pa / Post Ref: DJ10/29

Senior Support Scientist in Electron Microscopy
Grade 8 / Salary £36,715 to £43,840 pa / Post Ref: DJ10/30

See http://www.materials.ox.ac.uk/vacancies.html for further details.


Dr Peter Nellist {peter.nellist-at-materials.ox.ac.uk}
University Lecturer in Materials
Tutorial Fellow at Corpus Christi College
Department of Materials
University of Oxford
Parks Road
OXFORD
OX1 3PH
UK

Phone: +44 (0)1865-273656
Fax: +44 (0)1865-283329

Sent on behalf of Pete Nellist.

Mr. Ron Doole Department of Materials
Senior Instrumentation Engineer. University of Oxford.
Phone +44 (0) 1865 273701 Parks Road. Oxford. OX1 3PH
Fax +44 (0) 1865 283333 ron.doole-at-materials.ox.ac.uk

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From: cross-at-tru.ca
Date: Mon, 10 Jan 2011 17:12:53 -0600
Subject: [Microscopy] LM/Teaching

Contents Retrieved from Microscopy Listserver Archives
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Hello "Scopenerds"!

Anyone out there use the "Labomed LX400" for lab teaching?

Any testimonials either pro and con in a second year lab setting re: performance and durability?

Please respond privately to me cross-at-tru.ca

Your comments will be much appreciated!

Sincerely,
Cindy







==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Tue, 11 Jan 2011 10:56:40 -0600
Subject: [Microscopy] Fwd: Ask-A-Microscopist - SEM access needed, mid-Long Island NY

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

} Date: Mon, 10 Jan 2011 16:08:32 -0800 (PST)
} From: Richard Kurtz {rkurtz-at-commack.k12.ny.us}
} To: oshel1pe-at-cmich.edu
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Monday, January 10,
} 2011 at 04:08:30 PM.
}
} realname - Richard Kurtz
} Email - rkurtz-at-commack.k12.ny.us
} ORGANIZATION - Commack High School
} EDUCATION - 9-12th Grade High School
} LOCATION - Commack, NY, USA
} SUBJECT_OF_QUESTION - image of a insect foot pad
} QUESTION - To Whom it may concern,
}
} I am a high school science teacher at Commack High School on Long Island, NY
} I have a pair of students investigating the walking ability of the
} Indian walking stick. The have the ability to walk on a host of
} materials upside down and vertically.
}
} They and I wanted to find a place that would be able to look at
} their footpads microscopically.
} We are very interested in their surface, what structures are on
} their feet. We want to know
} were we may be able to find a place that would be able and willing
} to help us with this.
}
} I have no idea how this could happen but just asking.
}
} Any advice or suggestions that you could provide would be great
}
} Thanks so much
}
--
***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
not a member the listserver, and
**any reply should go directly to the poster**
as well as to the list.
Using the "reply" function in your email does *not* send your answer
to the person asking the question.
Please copy their email address from their question.
****************************************************************************************

==============================Original Headers==============================
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From: sjrobin-at-illinois.edu
Date: Tue, 11 Jan 2011 11:15:35 -0600
Subject: [Microscopy] Fwd: Ask-A-Microscopist - SEM access needed,

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This is something we could do as part of a Bugscope session, and I
invite you to apply.

Thank you

Scott, with Bugscope


--
Microscopy Suite | Imaging Technology Group |
Beckman Institute for Advanced Science and Technology |
University of Illinois at Urbana-Champaign |
405 North Mathews Avenue, Urbana IL 61801 |
217 265 5071 | 217 244 6219 (fax)
sjrobin-at-illinois.edu | http://itg.beckman.illinois.edu |
http://bugscope.beckman.illinois.edu




-----Original Message-----
X-from: oshel1pe-at-cmich.edu [mailto:oshel1pe-at-cmich.edu]
Sent: Tuesday, January 11, 2011 11:09 AM
To: Robinson, Scott J.

} Date: Mon, 10 Jan 2011 16:08:32 -0800 (PST)
} From: Richard Kurtz {rkurtz-at-commack.k12.ny.us}
} To: oshel1pe-at-cmich.edu
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Monday, January 10,
} 2011 at 04:08:30 PM.
}
} realname - Richard Kurtz
} Email -
} ORGANIZATION - Commack High School
} EDUCATION - 9-12th Grade High School
} LOCATION - Commack, NY, USA
} SUBJECT_OF_QUESTION - image of a insect foot pad QUESTION - To Whom it
} may concern,
}
} I am a high school science teacher at Commack High School on Long
} Island, NY I have a pair of students investigating the walking ability
} of the Indian walking stick. The have the ability to walk on a host of

} materials upside down and vertically.
}
} They and I wanted to find a place that would be able to look at their
} footpads microscopically.
} We are very interested in their surface, what structures are on their
} feet. We want to know were we may be able to find a place that would
} be able and willing to help us with this.
}
} I have no idea how this could happen but just asking.
}
} Any advice or suggestions that you could provide would be great
}
} Thanks so much
}
--
************************************************************************
***************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely not a
member the listserver, and **any reply should go directly to the
poster** as well as to the list.
Using the "reply" function in your email does *not* send your answer to
the person asking the question.
Please copy their email address from their question.
************************************************************************
****************

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From: lgiannuzzi-at-comcast.net
Date: Tue, 11 Jan 2011 19:53:19 -0600
Subject: [Microscopy] viaWWW: FIB/SEM Specialist: open position at Weatherford

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: lgiannuzzi-at-comcast.net
Name: Lucille Giannuzzi

Organization: L.A. Giannuzzi & Associates LLC

Title-Subject: [Filtered] FIB/SEM Specialist: open position at Weatherford

Message: FIB-SEM Specialist
Weatherford Laboratories
Houston, TX
Description: Weatherford Laboratories is seeking
qualified candidates to fill the position of
FIB-SEM Specialist at its Houston, Texas
facility. The FIB-SEM Specialist is responsible
for operating and maintaining a dual-column
Focused Ion Beam (FIB) microscope / Scanning
Electron Microscope (SEM) analytical instrument
primarily to provide characterization of rock
material from unconventional reservoirs. The FIB
microscopy work includes in-situ high resolution
imaging, micro-chemical analysis, and
site-specific 3-D feature analysis, utilizing
energy dispersive spectrometry (EDS) / secondary
and backscatter electron characterization
techniques. The FIB Microscopist will utilize
their skills with dual-column FIB /electron
microscopy to evaluate rock properties; perform
data /image processing, including 3-D
reconstruction and visualization of FIB
imaging/analytical data; analyze and interpret
comprehensive and multiple datasets; and
communicate results to clients by oral and
written reports.
Qualifications: A bachelorís degree in a relevant
scientific area is required, advanced degree
preferred. Experience with operation of a
dual-column FIB-SEM microscope is required. Image
processing and geologic background a strong plus.
Salary/Benefits: Commensurate with degree and
experience. Company provides competitive benefit
packages.
Salary Range: Commensurate with degree and experience.
Contact Information:
Name: LouAnn Reid
Company: Weatherford Laboratories
Address: 5200 N. Sam Houston Pkwy W., Suite 500, Houston, TX 77086
Email: louann.reid-at-weatherfordlabs.com
Website: www.weatherford.com to apply for position
Open Search: 12/9/10
Close Search: Until filled


Login Host: 76.101.236.182
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From: dsherman-at-purdue.edu
Date: Tue, 11 Jan 2011 20:12:30 -0600
Subject: [Microscopy] Commercial microscopy rates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

We are in the process of revising our recharge rates for our core microscopy
facility. Although we do not solicit imaging projects from external
customers, we do get some...usually from former students or companies
associated with university faculty.

Our major instrumentation was purchased with the help of federal grants. The
granting agencies do not have a problem with our using them for external
projects provided that all internal clients funded by that agency,
especially those whose projects were used for justification, have as much
access as desired. However, they stipulate that any charges be equivalent
to those of commercial providers.

Thus I need to talk to for-profit companies, who provide SEM and TEM,
regarding current rates so that we can comply with this mandate. I would
greatly appreciate your contacting me if you will be willing to help me in
this task.

Thanks,
Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy





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From: dsherman-at-purdue.edu
Date: Tue, 11 Jan 2011 20:15:54 -0600
Subject: [Microscopy] Staining somatic cells in milk

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Hi all,
We have someone who wants images of somatic cells (mainly leukocytes) in
milk using light microscopy. I am looking for a staining method and would
appreciate any hints to accomplish this. This is a bit out of my area with
my being primarily an electron microscopist.

Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/




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6, 28 -- Subject: Staining somatic cells in milk
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From: nizets2-at-yahoo.com
Date: Wed, 12 Jan 2011 05:50:12 -0600
Subject: [Microscopy] Staining somatic cells in milk

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Debby!

The main question is: can you isolate the cells, stain them and put them back in
the milk?

If not, here are 2 possibilities:

The easiest one I can see is to incubate the sample with a DNA dye such as DAPI
or Hoechst. These dyes are not expensive and are used by all microscopists doing
fluorescence.
Just mix the milk with a little bit of dye and observe...that's all!
The only drawback is that you need a fluorescence microscope, but nowadays they
are everywhere! I hope that the milk doesn't have an intrinsic autofluorescence
in the UV range!

Alternatively tetrazolium salts can be metabolized by live cells into formazan,
which are dyes. Some formazan dyes are soluble, others are not. Just choose an
insoluble, like MTT. In this case you will only stain live cells, not the dead
one.
Tetrazolium salts are not expensive.

You won't be able to make the difference with germinal cells, though :-D
I would avoid to use dyes which stain the membranes, since they may concentrate
in the lipid droplets of the milk.

Regards,
Stephane



----- Original Message ----
X-from: "dsherman-at-purdue.edu" {dsherman-at-purdue.edu}
To: nizets2-at-yahoo.com
Sent: Wed, January 12, 2011 3:18:44 AM


Hi all,
We have someone who wants images of somatic cells (mainly leukocytes) in
milk using light microscopy.  I am looking for a staining method and would
appreciate any hints to accomplish this. This is a bit out of my area with
my being primarily an electron microscopist.

Debby
--
Debby Sherman, Director              Phone: 765-494-6666
Life Science Microscopy Facility    FAX:  765-494-5896
Purdue University                  E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/




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6, 28 -- To: "message to: MSA list" {microscopy-at-microscopy.com}
6, 28 -- Date: Tue, 11 Jan 2011 21:15:51 -0500
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From: mseabul-at-aerotek.com
Date: Wed, 12 Jan 2011 10:03:33 -0600
Subject: [Microscopy] viaWWW: Job Opening: Applications Scientist TEM/STEM of catalysts

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Email: mseabul-at-aerotek.com
Name: Melanie Seabul

Organization: Aerotek Scientific

Title-Subject: [Filtered] Job Opening: Applications Scientist
TEM/STEM of catalysts

Message: Hi! My name is Melanie and I work for Aerotek Scientific, a
technical staffing firm in the Chicagoland area. I currently have an
opening for a microscopy position in the area. Some details on this
position are as follows:

-individual must be familiar with working with an STEM/TEM electron
microscope, in support of the materials and catalyst development of
the company
-Individual will collaborate with and assist senior electron
microscopists in the development of new capabilities for a new probe
aberration corrected STEM/TEM microscope
-Will be designing and conducting experiments and techniques using
this microscope
-operating the aberration corrected microscope for characterization
of nanomaterials and catalysts
-develope advanced applications for STEM, EELS, EDS tomography, and
in-situ for beam sensitive nanomaterials

Best candidate will have Ph.D. in Materials Science, chemistry,
physics or metallurgy with specialization in electron microscopy,
experience with at least one of EDS, EELS, tomography or in-situ
techniques and 0-5 years in a related field. Strong understanding of
instrumentation and other characterization techniques such as X-ray
diffraction are a plus.

Please let me know if you or anyone that you know may be interested
and qualified for this position, I am actively seeking great
candidates! Thank you!

Melanie Seabul
Aerotek Scientific
1790 Nations Drive, Suite 116
Gurnee, IL 60031

Direct Line: 847-782-5447
E-mail: mseabul-at-aerotek.com


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From: mseabul-at-aerotek.com
Date: Wed, 12 Jan 2011 10:03:54 -0600
Subject: [Microscopy] viaWWW: Job Opening: Applications Scientist Metallurgy/Corrosion

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Email: mseabul-at-aerotek.com
Name: Melanie Seabul

Organization: Aerotek Scientific

Title-Subject: [Filtered] Job Opening: Applications Scientist
Metallurgy/Corrosion

Message:
Hi! My name is Melanie and I work for Aerotek Scientific, a technical
staffing firm in the Chicagoland area. I currently have a job
opportunity for a Metallurgy/Corrosion scientist. Some details on
this position are as follows:

-individual must have 10 years of on the job experience as a
metallurgist and corrosion scientist
-strong analytical chemistry skills
-must have strong understanding of the degradation of metal at its
surface through interaction with chemicals
-working on project basis, researching and studying structures and
chem. Properties of metals
-experience working/running/analyzing the following tests: materials
analysis, failure investigation, materials conservation, organic
chemistry, analytical chemistry, petrographic evaluation
-will be involved in running these tests: nondestructive evaluation,
water penetration testing, strain and fracture monitoring, vibration
monitoring, load testing, blast monitoring, frequency identification

The best candidate will have a masters degree, or higher, in a
related scientific field with 10 years of experience. Please let me
know if you or anyone that you know may be interested and qualified
for this position as I am actively seeking great candidates! Thank
you!

Melanie Seabul
Aerotek Scientific
1790 Nations Drive, Suite 116
Gurnee, IL 60031

Direct Line: 847-782-5447
E-mail: mseabul-at-aerotek.com


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From: NEERAJG-at-clemson.edu
Date: Wed, 12 Jan 2011 13:01:16 -0600
Subject: [Microscopy] Re: Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Carol,

As the article describes, the early version of the instrument could only reach modest resolutions and we have to remember that the thermal advancement Ultramicrotome by Porter and Bloom was reported in 1953. We know now what the combination of TEM and ultramicrotome did for biology and other fields, and gradually many crucial discoveries were made using the TEM which eventually could attain atomic resolutions. This is somewhat similar to discovery of LASER, many of the key people who worked on the LASER during its conception were awarded the Nobel prize later (Luckily the TEM didn't go through the lawsuits and patent battles that the LASER did). This may be true of our times too, we have yet to fully grasp the potential of recent advances in super-resolution optical imaging.

Best,

Neeraj.


Neeraj V. Gohad, Ph.D.
Postdoctoral Fellow
Okeanos Research Group
Department of Biological Sciences
132 Long Hall
Clemson University
Clemson,SC-29634
Phone: 864-656-3597
Fax: 864-656-0435

Website: http://www.clemson.edu/okeanos





-----Original Message-----
X-from: Carol Heckman [mailto:heckman-at-bgsu.edu]
Sent: Sunday, January 09, 2011 12:00 PM
To: Neeraj Gohad

Happy New Year Everyone!

I recently read this article about Ernst Ruska and thought of sharing it with the list, many of you may have already read this but it's truly a fascinating read.

http://www.mpg.de/english/illustrationsDocumentation/multimedia/mpResearch/2006/heft03/Electron_Microscopy_Ernst_Ruska.pdf

Best Regards,

Neeraj.


Neeraj V. Gohad, Ph.D.
Postdoctoral Fellow
Okeanos Research Group
Department of Biological Sciences
132 Long Hall
Clemson University
Clemson,SC-29634
Phone: 864-656-3597
Fax: 864-656-0435

Website: http://www.clemson.edu/okeanos





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From: schooley-at-mcn.org
Date: Wed, 12 Jan 2011 13:22:17 -0600
Subject: [Microscopy] Re: Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Sorry, Neera - the Porter-Blum microtome was mechanical advance.
Simple, reliable, unbreakable.

Caroline

} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America

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From: wmassover-at-anl.gov
Date: Wed, 12 Jan 2011 13:24:24 -0600
Subject: [Microscopy] A New Resource for Trying to Improve Resolution with Biospecimens

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

January 12, 2011

To All Microscopists Researching High Resolution Biological Structure:

I call your attention to a new Special Issue of the Elsevier journal, MICRON, which has just been published (Volume 42, number 2: February, 2011). This originated from a realization that several different types of modern microscopes now can readily achieve atomic and sub-Ã…ngstrom levels of resolution with many inorganic specimens; since the resolution with biological specimens still only rarely obtains better than 3Ã… (0.3nm), this deficient resolution must not be caused by the instrument, but rather is due to inadequacies in specimen preparation and in structural preservation during data collection. These two important subjects are what the Special Issue deals with, in the context of a wide variety of biospecimens and use of several different kinds of microscopes (TEM, STEM, SEM, and AFM).

The 11 new review articles within this Special Issue concern the many practical problems for trying to produce better specimen preparation and preservation. Each is written by expert practicing microscopists. Many examples of research results and technical advances are illustrated by selected micrographs, diagrams, and charts, and are documented by extensive literature citations. Practical interest is expected from research students, technicians, and postdocs, as well as from experienced microscopists. We hope that these new reviews will be both informative and stimulating for all biological microscopists trying to obtain structural data with even higher resolution levels than are currently possible.

A complete table of contents follows this message. This Special Issue is included with all regular subscriptions to MICRON, and now is available to those at many institutions via the Science Direct website
(http://www.sciencedirect.com).

Sincerely, and Happy New Year (2011),

BILL MASSOVER

William H. Massover
Guest Editor, MICRON
wmassover-at-anl.gov








Special Issue

MICRON Volume 42(2) February 2011: Contents

"Biological Specimen Preparation and Preservation for High Resolution Microscopies"


97 Introduction to Special Issue of Micron: “Biological specimen preparation and preservation for
high resolution microscopiesâ€

W.H. Massover

100 Obtaining high-resolution images of biological macromolecules by using a cryo-electron microscope
with a liquid-helium cooled stage

K. Mitsuoka

107 Electron cryomicroscopy of membrane proteins: Specimen preparation for two-dimensional
crystals and single particles

I. Schmidt-Krey and J.L. Rubinstein

117 Negative staining and cryo-negative staining of macromolecules and viruses for TEM

S. De Carlo and J. Robin Harris

132 Specimen preparation for electron diffraction of thin crystals

H. Wang and K.H. Downing

141 New and unconventional approaches for advancing resolution in biological transmission
electron microscopy by improving macromolecular specimen preparation and preservation

W.H. Massover

152 Cryo-electron tomography on vitrified sections: A critical analysis of benefits and limitations for
structural cell biology

C. Bouchet-Marquis and A. Hoenger

163 Preparation and high-resolution microscopy of gold cluster labeled nucleic acid conjugates and
nanodevices

R.D. Powell and J.F. Hainfeld

175 Low voltage high-resolution SEM (LVHRSEM) for biological structural and molecular analysis

H. Schatten

186 Assessing the structure and function of single biomolecules with scanning transmission electron
and atomic force microscopes

S.A. Müller, D.J. Müller and A. Engel

196 Preparation of DNA and nucleoprotein samples for AFM imaging

Y.L. Lyubchenko


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From: r.gilbert-at-auckland.ac.nz
Date: Wed, 12 Jan 2011 13:43:14 -0600
Subject: [Microscopy] Staining somatic cells in milk

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I did a few years looking at milk in-situ in mammary gland including lactating and involuting where we saw lots of somatic cells.

Hoechst or DAPI will work fine, there is not a significant problem with autofluorescence even in the UV range, and you can differentiate the types of cells a little by the staining pattern.

If you do not want to go the fluorescence root you could use plain old heamotoxylin and eosin. This has an added advantage, leucocytes are highly eosinophillic and are characterised very well with standard H&E. You will also get good ID on other cell types.

If you do not want spin down your cells you could try a standard blood smear prep on a coated slide and fix them on with formalin or paraformaldehyde. Alternatively you could add low melting point agar or agarose and set them as a gel. This will allow processing through paraffin if you need (although you lose your water and milk lipids of course.

Thanks

Ray


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Thursday, 13 January 2011 1:00 a.m.
To: Ray Gilbert

Hi Debby!

The main question is: can you isolate the cells, stain them and put them back in
the milk?

If not, here are 2 possibilities:

The easiest one I can see is to incubate the sample with a DNA dye such as DAPI
or Hoechst. These dyes are not expensive and are used by all microscopists doing
fluorescence.
Just mix the milk with a little bit of dye and observe...that's all!
The only drawback is that you need a fluorescence microscope, but nowadays they
are everywhere! I hope that the milk doesn't have an intrinsic autofluorescence
in the UV range!

Alternatively tetrazolium salts can be metabolized by live cells into formazan,
which are dyes. Some formazan dyes are soluble, others are not. Just choose an
insoluble, like MTT. In this case you will only stain live cells, not the dead
one.
Tetrazolium salts are not expensive.

You won't be able to make the difference with germinal cells, though :-D
I would avoid to use dyes which stain the membranes, since they may concentrate
in the lipid droplets of the milk.

Regards,
Stephane



----- Original Message ----
X-from: "dsherman-at-purdue.edu" {dsherman-at-purdue.edu}
To: nizets2-at-yahoo.com
Sent: Wed, January 12, 2011 3:18:44 AM


Hi all,
We have someone who wants images of somatic cells (mainly leukocytes) in
milk using light microscopy.  I am looking for a staining method and would
appreciate any hints to accomplish this. This is a bit out of my area with
my being primarily an electron microscopist.

Debby
--
Debby Sherman, Director              Phone: 765-494-6666
Life Science Microscopy Facility    FAX:  765-494-5896
Purdue University                  E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/




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From: NEERAJG-at-clemson.edu
Date: Wed, 12 Jan 2011 13:52:50 -0600
Subject: [Microscopy] Re: Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

My mistake, I meant mechanical, Porter-Blum MTI was indeed mechanical, but you get the point. What is the name of Ruska's book that you mentioned.

Best,

Neeraj.

-----Original Message-----
X-from: schooley-at-mcn.org [mailto:schooley-at-mcn.org]
Sent: Wednesday, January 12, 2011 2:27 PM
To: Neeraj Gohad

Sorry, Neera - the Porter-Blum microtome was mechanical advance.
Simple, reliable, unbreakable.

Caroline

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From: RossLM-at-missouri.edu
Date: Wed, 12 Jan 2011 14:41:43 -0600
Subject: [Microscopy] 4-Day SEM Training Course - Univ of Missouri 3/29/11

Contents Retrieved from Microscopy Listserver Archives
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The Electron Microscopy Core (EMC) at the University of Missouri Columbia, MO is proud to host an intensive short course:

Understanding and Optimizing FESEM and EDS Performance (Basic to Advanced)

Course Dates: Tuesday March 29 – Friday April 1, 2011
Cost: $1200 includes all course material (handouts and CD) and hands-on instrument instruction along with a reception and banquet
Enrollment is limited to 12 participants!

Course Instructor: Steve Chapman - Protrain
Steve Chapman formed Protrain in 1982 and is the senior consultant in electron microscopy. Steve first became involved with electron microscopes in 1964 at the University of Birmingham, England, then as an EM service engineer in the UK, and afterwards moved into sales and marketing where he worked with a number of electron microscope and accessory manufacturers in the demonstration and application fields. Running courses in many parts of the world, north and south of the equator, he has written six books including those on the operation and maintenance of scanning and transmission electron microscopes. His publications include papers on a range of electron microscopy subjects from instrument design through a wide range of applications and more recently on Quality in Electron Microscopy.

In a round-table illustrated discussion, you will be taken through the theory and practice of the operation of the scanning electron microscope, from basic through to advanced levels. In addition, the course will cover specimen preparation techniques and coating procedures. The EMC houses two field emission SEM’s, a Hitachi cold-field SEM (S-4700) and a FEI thermal FE SEM (Quanta 600 ESEM) with a Thermo System Six EDS. Practical periods will offer you the opportunity to evaluate instrument performance over a wide range of accelerating voltages and make appropriate modifications to the set-up in order to optimize the instrument’s performance. In this way, gun and specimen geometry may be better understood and you will be able to raise your skill levels to bring better performance from an instrument than the manufacturer claims. Other topics to be covered are low vacuum operation and imaging along with qualitative EDS analysis.

All students will operate the instruments themselves and develop their own talents. Under the eagle eye and guidance of Steve, participants should come away from this course with the understanding and abilities necessary to obtain the highest quality imaging and chemical analysis from their SEM/EDS systems.

Additional Support by: FEI, Hitachi High Technologies America, and Thermo Scientific.

For more Information or to register go to: http://www.emc.missouri.edu/ or contact me at rosslm-at-missouri.edu or at (573) 882-4777

Lou Ross
--
Sr. Research Specialist
University of Missouri
Electron Microscopy Core Facility
W136 Veterinary Medicine Building
Columbia, MO 65211
573.882.4777, fax 573.884.2227
RossLM-at-missouri.edu
http://www.emc.missouri.edu/



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From: paul_hazelton-at-umanitoba.ca
Date: Wed, 12 Jan 2011 17:34:36 -0600
Subject: [Microscopy] Re: Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
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Neeraj et al

To follow up on what Caroline said, thermal advance was first brought
out by LKB, and I believe was developed by Sjostrand.

Regards the Nobel Prize. Story I heard but could never get confirmed
was that the failure to give Ruska the prize before the 1980's started
as political, proceeded to oversight, and in the end became an
embarrassment.

Ernst Ruska remained in Germany during WWII, and worked with the German
war effort. Please remember that one of the major uses of the
microscope in Germany and the US was in the development of the atomic
bomb. Because of this, in the time leading up to, during and
immediately after the war giving the prize to someone from Germany was
not very acceptable. This was the story to me in 1969, when I first
started doing EM. Ruska was, of course still alive, but as told, would
not be a candidate for the prize.

Over the ensuing years Ruska sort of got forgotten. Then came the
development of Scanning Tunneling EM. In 1986, when the Academy was
considering the award of the Prize in Physics to Binnig and Rohrer they
realized, much to many people's chagrin, that Ruska had never been
recognized. Whatever his personal feelings may have been, his speech
was gracious, and only said:

"Here, I only want to emphasize my impression that the scanning tunnel
electron microscopy of Gerd Binnig and Heinrich Rohrer has obviously
been accepted much faster by scientific colleagues than electron
microscopy fifty years ago." (Ernst Ruska, Nobel Banquet Speech,
December 10, 1986)

Sadly, the failure to act in a more timely fashion meant that others
such as Hans Busch and Max Knoll (the only names that jump to mind just
now) did not also receive the recognition they deserved.

Politics in the award of the Prize in all fields has been a long
tradition. It still carries on. Witness the award of the Prize in
Peace in 2009 to Barrack Obama, and the award of the Prize in Peace to
Henry Kissinger in 1973, without recognition of Nixon, who, for all the
wrong things he did, directed the negotiations which lead to the end of
the Viet Nam war and ultimately deserved to share in this recognition.
And that is a heck of a statement for someone considered to be
politically to the left of centre.

Paul Hazelton

Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982


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From: paul_hazelton-at-umanitoba.ca
Date: Wed, 12 Jan 2011 17:55:09 -0600
Subject: [Microscopy] Re: Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The title of the book is The early development of electron lenses and
electron microscopy. The English translation was by Mulvey, and it was
published in 1980.

My copy was borrowed 25 years ago, and I have not seen it since. It is
long out of print.

paul hazelton

Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982

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From: brad-at-nanounity.com
Date: February 3, 2011
Subject: [Microscopy] viaWWW: NCSM kick-off meeting

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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: brad-at-nanounity.com
Name: Brad Rangell

Organization: NCSM

Title-Subject: [Filtered] NCSM kick-off meeting

Message: We are happy to announce the long
anticipated reinstatement of the Northern
California Chapter of the Society for Microscopy.
Our first meeting will be an informal reception
for you to get re-acquainted with your microscopy
colleagues. During this get-together we want to
begin to formalize membership and to obtain ideas
for upcoming events for 2011. We anticipate the
meeting to be a mix of networking and
socializing, exchange of information and input
from the membership on objectives and direction
for this chapter. With this in mind here is the
initial outline of the meeting. ...


Time: 6:00 to 8:00 PM

Location: International Building, SRI
International, 333 Ravenswood Ave., Menlo Park,
CA 94025; directions to follow.

Membership: $40 regular member, $20 student member, $100 corporate membership

Social hours: 6:00 to 7:00 PM hors de' oeuvres and beverages provided

Business items: 7:00 ñ 8:00 Informal Discussion of the following topics:

ï Officer Elections ñ we would like to ask
members to provide suggestions of individuals to
become elected officers. These can be submitted
during the course of the evening.
ï Discussion of By Laws for the society
ï Discussion of future meetings and events in
2011 including subject matter and locations

Please send RSVP and questions to: Steve
Samuelsson steven.samuelsson-at-sri.com or Brad
Rangell brad-at-nanounity.com.

Please forward this notice to friends and
colleagues who may have interest in joining NCSM
and attending this kick-off meeting.


Login Host: 67.170.208.232
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From: NEERAJG-at-clemson.edu
Date: Wed, 12 Jan 2011 20:29:55 -0600
Subject: [Microscopy] Re: Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
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Paul,

Thanks for sharing the story as well as the title of the book. The story is really interesting and sheds some light on why the prize was awarded so late. As we are all aware, any human endeavor is fraught with politics and I am sure the Nobel committees aren't immune to it. On the subject of Nobel piece prizes, a pretty major one they missed (according to the Nobel foundation itself) was Mahatma Gandhi (if any ones interested http://nobelprize.org/nobel_prizes/peace/articles/gandhi/ ).

Best Regards,

Neeraj.


Neeraj V. Gohad, Ph.D.
Postdoctoral Fellow
Okeanos Research Group
Department of Biological Sciences
132 Long Hall
Clemson University
Clemson,SC-29634
Phone: 864-656-3597
Fax: 864-656-0435

Website: http://www.clemson.edu/okeanos





-----Original Message-----
X-from: paul_hazelton-at-umanitoba.ca [mailto:paul_hazelton-at-umanitoba.ca]
Sent: Wednesday, January 12, 2011 6:40 PM
To: Neeraj Gohad

Neeraj et al

To follow up on what Caroline said, thermal advance was first brought
out by LKB, and I believe was developed by Sjostrand.

Regards the Nobel Prize. Story I heard but could never get confirmed
was that the failure to give Ruska the prize before the 1980's started
as political, proceeded to oversight, and in the end became an
embarrassment.

Ernst Ruska remained in Germany during WWII, and worked with the German
war effort. Please remember that one of the major uses of the
microscope in Germany and the US was in the development of the atomic
bomb. Because of this, in the time leading up to, during and
immediately after the war giving the prize to someone from Germany was
not very acceptable. This was the story to me in 1969, when I first
started doing EM. Ruska was, of course still alive, but as told, would
not be a candidate for the prize.

Over the ensuing years Ruska sort of got forgotten. Then came the
development of Scanning Tunneling EM. In 1986, when the Academy was
considering the award of the Prize in Physics to Binnig and Rohrer they
realized, much to many people's chagrin, that Ruska had never been
recognized. Whatever his personal feelings may have been, his speech
was gracious, and only said:

"Here, I only want to emphasize my impression that the scanning tunnel
electron microscopy of Gerd Binnig and Heinrich Rohrer has obviously
been accepted much faster by scientific colleagues than electron
microscopy fifty years ago." (Ernst Ruska, Nobel Banquet Speech,
December 10, 1986)

Sadly, the failure to act in a more timely fashion meant that others
such as Hans Busch and Max Knoll (the only names that jump to mind just
now) did not also receive the recognition they deserved.

Politics in the award of the Prize in all fields has been a long
tradition. It still carries on. Witness the award of the Prize in
Peace in 2009 to Barrack Obama, and the award of the Prize in Peace to
Henry Kissinger in 1973, without recognition of Nixon, who, for all the
wrong things he did, directed the negotiations which lead to the end of
the Viet Nam war and ultimately deserved to share in this recognition.
And that is a heck of a statement for someone considered to be
politically to the left of centre.

Paul Hazelton

Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982


==============================Original Headers==============================
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From: cross-at-tru.ca
Date: Wed, 12 Jan 2011 22:20:08 -0600
Subject: [Microscopy] Re: Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thanks for all of this - a very interesting thread, indeed!

Cheers,
Cindy

} } } {NEERAJG-at-clemson.edu} 12/01/2011 6:39 pm } } }



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Paul,

Thanks for sharing the story as well as the title of the book. The story is really interesting and sheds some light on why the prize was awarded so late. As we are all aware, any human endeavor is fraught with politics and I am sure the Nobel committees aren't immune to it. On the subject of Nobel piece prizes, a pretty major one they missed (according to the Nobel foundation itself) was Mahatma Gandhi (if any ones interested http://nobelprize.org/nobel_prizes/peace/articles/gandhi/ ).

Best Regards,

Neeraj.


Neeraj V. Gohad, Ph.D.
Postdoctoral Fellow
Okeanos Research Group
Department of Biological Sciences
132 Long Hall
Clemson University
Clemson,SC-29634
Phone: 864-656-3597
Fax: 864-656-0435

Website: http://www.clemson.edu/okeanos





-----Original Message-----
X-from: paul_hazelton-at-umanitoba.ca [mailto:paul_hazelton-at-umanitoba.ca]
Sent: Wednesday, January 12, 2011 6:40 PM
To: Neeraj Gohad

Neeraj et al

To follow up on what Caroline said, thermal advance was first brought
out by LKB, and I believe was developed by Sjostrand.

Regards the Nobel Prize. Story I heard but could never get confirmed
was that the failure to give Ruska the prize before the 1980's started
as political, proceeded to oversight, and in the end became an
embarrassment.

Ernst Ruska remained in Germany during WWII, and worked with the German
war effort. Please remember that one of the major uses of the
microscope in Germany and the US was in the development of the atomic
bomb. Because of this, in the time leading up to, during and
immediately after the war giving the prize to someone from Germany was
not very acceptable. This was the story to me in 1969, when I first
started doing EM. Ruska was, of course still alive, but as told, would
not be a candidate for the prize.

Over the ensuing years Ruska sort of got forgotten. Then came the
development of Scanning Tunneling EM. In 1986, when the Academy was
considering the award of the Prize in Physics to Binnig and Rohrer they
realized, much to many people's chagrin, that Ruska had never been
recognized. Whatever his personal feelings may have been, his speech
was gracious, and only said:

"Here, I only want to emphasize my impression that the scanning tunnel
electron microscopy of Gerd Binnig and Heinrich Rohrer has obviously
been accepted much faster by scientific colleagues than electron
microscopy fifty years ago." (Ernst Ruska, Nobel Banquet Speech,
December 10, 1986)

Sadly, the failure to act in a more timely fashion meant that others
such as Hans Busch and Max Knoll (the only names that jump to mind just
now) did not also receive the recognition they deserved.

Politics in the award of the Prize in all fields has been a long
tradition. It still carries on. Witness the award of the Prize in
Peace in 2009 to Barrack Obama, and the award of the Prize in Peace to
Henry Kissinger in 1973, without recognition of Nixon, who, for all the
wrong things he did, directed the negotiations which lead to the end of
the Viet Nam war and ultimately deserved to share in this recognition.
And that is a heck of a statement for someone considered to be
politically to the left of centre.

Paul Hazelton

Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982


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From: wflai-at-lcsd.gov.hk
Date: Thu, 13 Jan 2011 03:15:40 -0600
Subject: [Microscopy] LM need help to identify termite frass

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear list members,

I've collected some light brown low density materials (of size about 1cm3)
from cultural heritage object that mixed with clay. I've done FTIR and
identified the material to be cellulose/wood. It was dispersed in water
and then mount on microscopic glass slide. The particles are irregular in
shape and measured 45-75 microns. I highly suspected they were termite
frass. Is there any reference guide for identification of termite frass?
They are coming from subtropical region in South East asia, that is Hong
Kong. Thank you.

Regards,
Wing Fai

This email message (together with any attachments) is for the designated recipient only. It may contain information that is privileged for the designated recipient. If you are not the intended recipient, you are hereby notified that any use, retention, disclosure, copying, printing, forwarding or dissemination of the message is strictly prohibited. If you have received the message in error, please erase all copies of the message (including attachments) from your system and notify the sender immediately.

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From: oshel1pe-at-cmich.edu
Date: Thu, 13 Jan 2011 13:46:27 -0600
Subject: [Microscopy] Ask-A-Microscopist - donor 'scopes for schools?

Contents Retrieved from Microscopy Listserver Archives
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} Date: Thu, 13 Jan 2011 11:32:22 -0800 (PST)
} From: Ronald Schwartz {ronmschwartz-at-yahoo.com}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Thursday, January 13,
} 2011 at 11:32:20 AM.
}
} realname - Ronald Schwartz
} Email - ronmschwartz-at-yahoo.com
} ORGANIZATION - Providence, RI museum, US Fish&Wildlife Nature Center
} EDUCATION - 6-8th Grade Middle School
} LOCATION - Wakefield, RI
} SUBJECT_OF_QUESTION - increasing microscope activities
} QUESTION - I am a volunteer at the museum and the nature center. I
} have been trying to initiate and expand microscope activities. I
} volunteer my own equipment and my time. I would like to expand this
} activity both where I volunteer and in the schools, but the
} equipment is limited. Are there places that donate microscopes or
} other equipment like cameras that link between the microscope and a
} computer? The schools, esp. the middle schools, have little or no
} equipment for either science class and/or extra-curricular activity.
} When there are old scopes, teachers also don't seem to be trained in
} using them.

--
***************************************************************************************
Forwarded from "Ask a Microscopist"
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not a member the listserver, and
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From: gradice-at-richmond.edu
Date: Thu, 13 Jan 2011 14:07:12 -0600
Subject: [Microscopy] Source of calcite crystals for demonstrating birefringence?

Contents Retrieved from Microscopy Listserver Archives
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Anyone know of a source for these? I'm teaching an microscopy course
and I'd like to show this classic demonstration. I got some cheap
crystals from Carolina Biological but they aren't very transparent.


Gary Radice
Department of Biology
University of Richmond
Richmond VA 23173
804-289-8107


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From: sckuehn-at-concord.edu
Date: Thu, 13 Jan 2011 14:33:58 -0600
Subject: [Microscopy] Re: Source of calcite crystals for demonstrating birefringence?

Contents Retrieved from Microscopy Listserver Archives
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Gary,

A geology department will usually have transparent calcite on hand, but
your institution does not appear to have that program. Transparent
calcite is often referred to as "Iceland Spar." A quick search should
turn up several potential suppliers. Wards, for example, has specimens
in four different size/quality categories with prices that vary accordingly.

Regards,

- Steve Kuehn


gradice-at-richmond.edu wrote:
} ----------------------------------------------------------------------------
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}
} Anyone know of a source for these? I'm teaching an microscopy course
} and I'd like to show this classic demonstration. I got some cheap
} crystals from Carolina Biological but they aren't very transparent.
}
}
} Gary Radice
} Department of Biology
} University of Richmond
} Richmond VA 23173
} 804-289-8107


--

----------------
Dr. Stephen C. Kuehn
Research Scientist and Lecturer
Manager, Electron Microprobe Facility
Division of Natural Sciences
Science, room 106

Concord University, Campus Box F20
1000 Vermillion St
PO Box 1000
Athens, WV 24712-1000

http://academics.concord.edu/sckuehn/
sckuehn-at-concord.edu kuehnsc-at-gmail.com
304-384-6322

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From: sckuehn-at-concord.edu
Date: Thu, 13 Jan 2011 15:10:06 -0600
Subject: [Microscopy] Fwd: Source of calcite crystals for demonstrating

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Gary and all,

Bart Cannon {cannonmp-at-comcast.net} just asked me to pass along that he
has available plenty of inexpensive, colorless "iceland spar" suitable
for demonstration purposes.

Regards,

- Steve

}
} Gary,
}
} A geology department will usually have transparent calcite on hand, but
} your institution does not appear to have that program. Transparent
} calcite is often referred to as "Iceland Spar." A quick search should
} turn up several potential suppliers. Wards, for example, has specimens
} in four different size/quality categories with prices that vary
} accordingly.
}
} Regards,
}
} - Steve Kuehn


--

----------------
Dr. Stephen C. Kuehn
Research Scientist and Lecturer
Manager, Electron Microprobe Facility
Division of Natural Sciences
Science, room 106

Concord University, Campus Box F20
1000 Vermillion St
PO Box 1000
Athens, WV 24712-1000

http://academics.concord.edu/sckuehn/
sckuehn-at-concord.edu kuehnsc-at-gmail.com
304-384-6322

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From: schooley-at-mcn.org
Date: Thu, 13 Jan 2011 17:49:32 -0600
Subject: [Microscopy] Re: Ask-A-Microscopist - donor 'scopes for schools?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


So I did a little digging on who reported thermal advance in ultramicrotomes first (not which commercial instruments came first) the original paper by Keith Porter and J. Blum published in 1953, A study in Microtomy for electron Microscopy, The Anatomical Record Volume 117, Issue 4, pages 685-709, December 1953, in it Porter and Blum describe two new mechanisms, one is a thermal expansion and the other is mechanical advancement (I have a PDF of this paper if anyone is interested). Here is an excerpt from the Summary of this paper

'Two new microtomes capable of cutting serial sections as thin as 25-50 mu are described. All moving parts in these instruments are supported in unlubricated pivots and the specimen is taken past the cutting edge only on the cutting stroke. These two features more than any others seem responsible for the successful performance of these microtomes. In one instrument, the prototype, the block is advanced to the knife by thermal expansion. In the other, the advancement is controlled mechanically.'

Interestingly enough, Fritiof Sjostrand's paper, A new microtome for ultrathin sectioning for high resolution microscopy, 1953 Experientia 9:114-121 (note the paper also published in 1953) says 'The microtome reported on in this paper represents a further development of the microtome designed by Porter' (http://www.springerlink.com/content/y3267k5456j11117/).

Also found an interesting book, Picture Control: The Electron Microscope and the Transformation of Biology in America by Nicolas Rasmussen, has some interesting history on this matter (see preview, http://books.google.com/books?id=rwC5QiqLS44C&pg=PA127&lpg=PA127&dq=Sjostrand+a+new+ultramicrotome&source=bl&ots=HCTXlObRJ-&sig=G46YfqxY8lrFtBptZDgmxIDbxuA&hl=en&ei=cHAvTfLRBsKSgQfMo-xa&sa=X&oi=book_result&ct=result&resnum=3&ved=0CCwQ6AEwAg#v=onepage&q&f=false


Pretty Interesting!

Best,

Neeraj.


Neeraj V. Gohad, Ph.D.
Postdoctoral Fellow
Okeanos Research Group
Department of Biological Sciences
132 Long Hall
Clemson University
Clemson,SC-29634
Phone: 864-656-3597
Fax: 864-656-0435

Website: http://www.clemson.edu/okeanos











X-from: Paul Hazelton [mailto:hazeltn-at-cc.umanitoba.ca]
Sent: Wednesday, January 12, 2011 4:09 PM
To: Neeraj Gohad

} ----------------------------------------------------------------------------
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Ron -

Bravo for your efforts! Are you aware that 1) MSA has regional
societies, & 2) the New England Society has kits for middle school
microscopy that they circulate to people like you? Their program
chair is Mary McCann
{mccanns-at-tiac.net} , (617)484-7865. If you have difficulty
reaching her, let me know.

I hope that you'll visit the Project MICRO web page (URL below).
There's a lot of advice about suitable equipment. Donated scopes can
be more of a liability than an asset; they are too complex for middle
school teachers & they usually need parts & service.

We're here to help; please ask questions. I'm a retiree, which means
that I have the time to respond to your Email!

Caroline
--
Caroline Schooley
Project MICRO Coordinator
Microscopy Society of America
45301 Caspar Point Road, Box 117
Caspar, CA 95420
Phone/FAX (707)964-9460
Project MICRO: http://www.microscopy.org/ProjectMICRO

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From: oshel1pe-at-cmich.edu
Date: Fri, 14 Jan 2011 07:58:34 -0600
Subject: [Microscopy] cathodoluminescence detectors

Contents Retrieved from Microscopy Listserver Archives
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Listers,

We're in the process of writing a proposal for a new SEM, and will
likely include a cathodoluminescence detector.
As I don't know a whole lot about these, I'd like some input on
performance, brands, models, prices, company service (especially
service) and the like.
Use will be for materials and especially mineralogy research and
teaching in our microscopy program. So the unit needs to be suitable
for research, but robust and user-friendly enough for teaching.

This is not for a NSF or such grant, so cost is also important (low
cost, whatever that is for a good cathodoluminescence detector). But
I don't have a good handle on prices yet - other than that there are
some hideously expensive units that we can't consider.
Vendor replies welcome.

BUT!
**Off-line** please, not to the list.

Although if someone wants to start a discuss on the technique and
uses of cathodoluminescence, I'd be interested in reading it ...

Thanks.

Phil
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: oshel1pe-at-cmich.edu
Date: Fri, 14 Jan 2011 08:08:03 -0600
Subject: [Microscopy] SDD detectors

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Listers,

First!
Please reply directly to me, **not** the list.

We are hoping to get a new silicon drift detector (SDD) EDS system
for our SEM. Either as a retro-fit or for a new SEM.
I've been looking at the models available, but I'd like to get some
user input - reliability, user-friendliness, company service, is the
software open-source or proprietary, and how much does the company
charge for software upgrades?
EDS software integration with SEM software/hardware, energy
resolution, light element abilities - all the usual things, but as
actual user experiences.

Is the system tied to a particular computer hardware design? (Our
current system uses an old proprietary circuit board that uses an
obsolete slot/bus, so it can't be upgraded or moved to a new
computer, the whole thing has to be replaced.)

This will be for both research - materials, mineralogy, biology, and
whatever else comes up - and teaching.

Vendor replies welcome. To me, please, not the list.

Phil
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: cross-at-tru.ca
Date: Fri, 14 Jan 2011 09:33:43 -0600
Subject: [Microscopy] Re: LM/Teaching

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Hi, folks - I just got ONE reply to this post! (One very useful one, mind you). But such a small number of responses is not typical for this group!

Am I to interpret the reduced feedback to meen that we should be wary of Labomed LX400??

Have a great weekend,
Cindy


} } } {cross-at-tru.ca} 10/01/2011 3:22 pm } } }


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Hello Microscopists!

Anyone out there use the "Labomed LX400" for lab teaching?

Any testimonials either pro and con in a second year lab setting re: performance and durability?

Please respond privately to me cross-at-tru.ca

Your comments will be much appreciated!

Sincerely,
Cindy







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From: oshel1pe-at-cmich.edu
Date: Fri, 14 Jan 2011 12:01:41 -0600
Subject: [Microscopy] Fwd: Ask-A-Microscopist - Photomicroscopy training in Florida?

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} Date: Fri, 14 Jan 2011 07:20:51 -0800 (PST)
} From: Norah Silva {norah-at-norahsilva.com}
} Subject: Ask-A-Microscopist - Photomicroscopy training in Florida?
}
} Below is the result of your form, submitted on Friday, January 14,
} 2011 at 07:20:43 AM.
}
} realname - Norah Silva
} Email - norah-at-norahsilva.com
} EDUCATION - Undergraduate College
} LOCATION - Boca Raton, FL 33432
} SUBJECT_OF_QUESTION - Capturing images
} QUESTION - Hello,
} I am a photographer and am going back to school for my BS and am
} very interested in the field of microscopy as well as recomendations
} of where to learn more about capture systems. Are there devices
} compatible with Hasselblad or Canon digital capture systems?
} What is the typical line of study to get in to this field?
}
} Thank you in advance for your advice,
} Norah Silva
}
--
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From: jmlebeau-at-ncsu.edu
Date: Fri, 14 Jan 2011 17:20:45 -0600
Subject: [Microscopy] Postdoctoral Position Available

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A post-doctoral position is available in the LeBeau group at North Carolina State University. The successful candidate will be responsible for the development of scanning transmission electron microscopy techniques in conjunction with studying interfaces, nanoparticles/nanocomposites, and device structures. The candidate will focus on quantitative electron microscopy, determination of heterogeneous interface structures, and exploring chemistry with spectroscopic techniques. Applicants should have demonstrated expertise in problem solving in materials science using a wide range of transmission electron microscopy techniques.

NCSU will soon acquire an aberration corrected microscope for ultra-high resolution STEM imaging and chemical analysis. Other equipment includes a JEOL 2010 STEM/TEM, several conventional TEMs, and a FIB. The position is available starting Jan 1, 2011 and requires a Ph. D. in materials science or a related field. Experience with aberration corrected STEM is desired. Duration is between 1-3 years and salary is commensurate with qualifications.

Interested candidates should apply online:

https://jobs.ncsu.edu/applicants/Central?quickFind=89348

AA/EEO. In addition, NC State welcomes all persons without regard to sexual orientation.

James LeBeau
Assistant Professor
Department of Materials Science & Engineering
North Carolina State University
jmlebeau-at-ncsu.edu






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From: vish.bhakthavatsalam-at-gmail.com
Date: Sat, 15 Jan 2011 09:08:13 -0600
Subject: [Microscopy] WWW:Position Open: Microscopist with a phD in chemistry

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Email: vish.bhakthavatsalam-at-gmail.com
Name: Vishnupriya

Organization: Aditya Birla Science and Technology

Title-Subject: [Filtered] Microscopist with a phD in chemistry

Message: A minimum Ph.D. in Physical Sciences,
Analytical Chemistry, Material Science or related
discipline
ï Experience
A minimum of 2-3 years of Hands ñon instrument
experience in SEM-EDS, EBSD, TEM are required in
the industry. Experience with materials used in
the mining/metal industry is a bonus; A
background in mineralogy and hands on experience
in characterization techniques thereof (SEM-EDS,
EBSD, TEM, AFM, sputter coating, sample
preparation using ultra microtome) is required.
Experience in surface science processes and
techniques (e.g. AFM, STM) will be considered
especially advantageous.

ï Mandatory skills
Good communication and presentation skills must
be evident; peer review publications in
international journals and presentations at
significant analytical conferences is a plus.
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From: erwrigh-at-emory.edu
Date: Sat, 15 Jan 2011 09:08:40 -0600
Subject: [Microscopy] viaWWW: Postdoctoral Position Available

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Email: erwrigh-at-emory.edu
Name: Elizabeth Wright

Organization: Emory University

Title-Subject: [Filtered] Postdoctoral Position Available

Message: A postdoctoral fellow position is available immediately with
the Spearman and Wright laboratories at Emory University to study HIV
assembly and trafficking using fluorescence microscopy and cryo-EM
methods.

Motivated candidates with strong interests in HIV biology and
cryo-electron microscopy of complex molecular assemblies are
encouraged to apply. Research experience in the following area(s) is
desired: 1) retrovirology, 2) cryo-EM, and/or 3) fluorescence
microscopy.

Our laboratories are within the Division of Pediatric Infectious
Diseases and are fully equipped for all aspects of molecular
virology, molecular biology and protein biochemistry. The Spearman
lab has a Deltavision deconvolution microscopy station and a spinning
disk confocal system both equipped for live cell imaging, FRAP,
photoactivation, and now for cryo-imaging. The Wright lab has
complete access to a JEOL 2200FS 200 kV FEG TEM with an in-column
energy filter, Zernike phase plates, and high-resolution 4kx4k CCD
camera; a JEOL 1400 120 kV TEM with 2kx2k CCD camera; and an FEI
Vitrobot and a manual grid plunge freezer. Emory is a vibrant,
multidisciplinary campus with strong ties to Georgia Tech and other
universities within Georgia. Access to facilities in NMR, Mass
Spectrometry, and X-ray crystallography are available.

Applicants should include a cover letter describing research
experience and interests, curriculum vitae, and names and contact
information for three references.

Dr. Elizabeth R. Wright
Emory University
Department of Pediatrics
2015 Uppergate Drive, NE Room: 548
Atlanta, GA 30322
erwrigh-at-emory.edu
Website: http://electronmicroscopy.emory.edu

Applications will be reviewed as they are received and until the
position is filled.


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From: sarj0007-at-unf.edu
Date: Sat, 15 Jan 2011 13:02:12 -0600
Subject: [Microscopy] ci-46 incubator

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We have an old CI-46 water jacketed CO2 incubator that was donated years ago. Someone wants to brush the dust off and try using this because they want to avoid contaminating our main incubators with something they want to grow.

Our problem though is that we no longer have contact with the group that donated the incubator I think, and they didn't include a manual. Does anyone have a manual laying around or basic instructions for use? None of the ports on the backside are labeled anymore, and I don't know if American Scientific Products got absorbed by another company I could possibly call or did they just dissolve or do some other action causing it to be a problem tracking them down. I'm a youngling.

On the backside I just see three ports, one is the power, one is something electrical, and the other looks like a water siphon port. I'm assuming the nut on the front when you open the door might be the fill for the water jacket. We don't see where the CO2 is attached anywhere and their is a rather larger hole through the back of the chamber and we don't see anything that should fill that hole given to us along with the incubator. I guess they were afraid the cells might be scared of the dark?

Help in either getting us an old manual or contact for who might still be servicing these machines would be helpful. Not quite microscopy but assuming a few people are still around biology labs or maybe a colleague they know. Thanks and enjoy the weekend.

Off topic for this, thanks for those of you on the Ernst Ruska thread. Some interesting informative posts about history are always a good read.

-Jason Saredy
University of North Florida


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From: Michael.Cammer-at-med.nyu.edu
Date: Sun, 16 Jan 2011 09:30:29 -0600
Subject: [Microscopy] viaWWW: TIRF laser alignment question

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Email: Michael.Cammer-at-med.nyu.edu
Name: Michael Cammer

Organization: Skirball Langone NYU Med Center

Title-Subject: [Filtered] TIRF laser alignment question

Message: We have the Nikon TIRF system and have three laser lines
going into the TIRF arm via a single fiber. When we project through
the 100X objective through the sample onto the wall we see that the
lines go through the sample at different angles. (You can see a
picture of the projection at approx 45 degrees at
http://www.flickr.com/photos/mcammer/5359189090/ .) It is also
noticeable in the TIRF images that the field depth is different for
each wavelength. Is this unavoidable due to the different
wavelengths or is it possible to align the optics better so these
spots would be more coincident?

Thank you.

Sincerely,

Michael Cammer

Login Host: 96.246.240.120
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From: john.oreopoulos-at-utoronto.ca
Date: Sun, 16 Jan 2011 10:30:18 -0600
Subject: [Microscopy] Re: viaWWW: TIRF laser alignment question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Michael,

That's a beautiful photograph of the unavoidable relationship between the angle of incidence and the wavelength of light used to illuminate the sample. It stems from the fact that the relative index of refraction of the glass-water interface is slightly different for for each wavelength. To ensure that the penetration depth is nearly equal for all laser lines, you would have to offset each laser beam to a different specific radial position on the back focal plane of the objective - and these relative spacings would change as well if you wanted a different penetration depth. You can work out what these spacings need to be by examining the basic equation for the TIRF penetration depth (you have to assume you know the wavelength dependent index of refraction of the sample though which ranges from 1.33 to 1.38) and you'll find that they are on the order of a few tens of micrometers depending on the specific penetration depth you desire (see http://micro.magnet.fsu.edu/primer/techniques/fluorescence/tirf/tirfintro.html). There's a nice little ImageJ plugin that can be used:

http://rsbweb.nih.gov/ij/plugins/tirf/index.html

John Oreopoulos
Research Assistant
Spectral Applied Research
9078 Leslie Street, Unit 11
Richmond Hill, Ontario
Canada


On 2011-01-16, at 10:37 AM, Michael.Cammer-at-med.nyu.edu wrote:

}
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} Email: Michael.Cammer-at-med.nyu.edu
} Name: Michael Cammer
}
} Organization: Skirball Langone NYU Med Center
}
} Title-Subject: [Filtered] TIRF laser alignment question
}
} Message: We have the Nikon TIRF system and have three laser lines
} going into the TIRF arm via a single fiber. When we project through
} the 100X objective through the sample onto the wall we see that the
} lines go through the sample at different angles. (You can see a
} picture of the projection at approx 45 degrees at
} http://www.flickr.com/photos/mcammer/5359189090/ .) It is also
} noticeable in the TIRF images that the field depth is different for
} each wavelength. Is this unavoidable due to the different
} wavelengths or is it possible to align the optics better so these
} spots would be more coincident?
}
} Thank you.
}
} Sincerely,
}
} Michael Cammer
}
} Login Host: 96.246.240.120
} ---------------------------------------------------------------------------
}
} ==============================Original Headers==============================
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From: vray-at-partbeamsystech.com
Date: Mon, 17 Jan 2011 21:19:19 -0600
Subject: [Microscopy] Help with Noran/Voyager EDX in Florida

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear John,

Thanks for the reply. Reading it and the referenced websites jogged my memory.

A few years ago we were having problems with the first commercial Olympus TIRF system because we could not get consistent evanescent waves with the one angle adjustment with the laser lines we had from 405 to 568 nm that were delivered via a single fiber (it was worse when we later added a 633 or 638 nm laser). I suggested we pump each laser in through a separate path that could be angled independently. We didn't build it, but I think Olympus now sells a TIRF system that does this.

Another issue is that when I first heard about TIRF maybe 15 years ago, it was introduced as a ring illumination at the outer edge of the back aperture, not as a single point or crescent at the periphery on only one side. A ring, or at least a series of points around the periphery, seems like a better way to provide a uniform field due to aberrations from coherent light in the imperfect optics. Any thought on this?

Sincerely,

Michael

_________________________________________
Michael Cammer, Assistant Research Scientist
Skirball Institute of Biomolecular Medicine
Lab: (212) 263-3208 Cell: (914) 309-3270


________________________________________
X-from: John Oreopoulos [john.oreopoulos-at-utoronto.ca]
Sent: Sunday, January 16, 2011 11:30 AM
To: Cammer, Michael; Microscopy-at-microscopy.com

Dear Listers,

I am posting this on the request of Bill Caufman from Intersil Company
in Palm Bay, Florida. Bill needs help with reviving an EDX system with
"Voyager" electronics made by Noran and needs technical assistance.

If someone can provide technical help or even on-site assistance for
this kind of EDX system in Palm Bay Florida - please respond directly to
Bill at

BCAUFFMA-at-intersil.com

Thank you very much beforehand,
--
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com

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From: Janne.Hyoetylae-at-stud.unibas.ch
Date: Tue, 18 Jan 2011 07:38:24 -0600
Subject: [Microscopy] Re: TIRF laser alignment question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Michael,


On Sun, 16 Jan 2011 19:19:44 +0100, {Michael.Cammer-at-med.nyu.edu} wrote:

} Another issue is that when I first heard about TIRF maybe 15 years ago,
} it was introduced as a ring illumination at the outer edge of the back
} aperture, not as a single point or crescent at the periphery on only one
} side. A ring, or at least a series of points around the periphery,
} seems like a better way to provide a uniform field due to aberrations
} from coherent light in the imperfect optics. Any thought on this?


Yes, you are right. See e.g. this paper about this very topic:
Fiolka, R., Belyaev, Y., Ewers, H., & Stemmer, A. (2008). Even
illumination in total internal reflection fluorescence microscopy using
laser light. Microscopy research and technique, 71(1), 45-50. doi:
10.1002/jemt.20527.

Cheers
Janne

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From: jehrman-at-mta.ca
Date: Tue, 18 Jan 2011 14:10:08 -0600
Subject: [Microscopy] Santovac 5? I need a few drops...

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings listers,

The Deben stage controls on the SEM are getting a little stiff, and the
maintenance manual recommends Santovac 5 for lubrication. Too bad, I
don't have any around, and I don't relish the thought of forking over
several hundred dollars for an entire bottle just to use a miniscule
bit. Has anybody out there recently serviced a DP and have an "empty"
Santovac container that I could squeeze a few drops out of? I'll spring
for shipping, plus offer sacrifices to the gods of EM on your behalf for
good vibes and round electrons.

Thanks in advance,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

Svent-Gyorgyi's Axiom:
Discovery consists of seeing what everybody
has seen and thinking what nobody thought.


==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Tue, 18 Jan 2011 14:18:36 -0600
Subject: [Microscopy] Re: Santovac 5? I need a few drops...

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jim,

If you don't get any from others in the Great White North, let me
know, I can send you some.
If we can get it past NTSA and Customs and ...

Phil
Hm. "GWN" is somewhat more than the land of the Maple Leaf right now.

} Greetings listers,
}
} The Deben stage controls on the SEM are getting a little stiff, and the
} maintenance manual recommends Santovac 5 for lubrication. Too bad, I
} don't have any around, and I don't relish the thought of forking over
} several hundred dollars for an entire bottle just to use a miniscule
} bit. Has anybody out there recently serviced a DP and have an "empty"
} Santovac container that I could squeeze a few drops out of? I'll spring
} for shipping, plus offer sacrifices to the gods of EM on your behalf for
} good vibes and round electrons.
}
} Thanks in advance,
}
} Jim
}
} --
}
} James M. Ehrman
} Digital Microscopy Facility
} Mount Allison University
} 63B York St.
} Sackville, NB E4L 1G7
} CANADA
}
} phone: 506-364-2519
} fax: 506-364-2505
} email: jehrman-at-mta.ca
} www: http://www.mta.ca/dmf
}
} Svent-Gyorgyi's Axiom:
} Discovery consists of seeing what everybody
} has seen and thinking what nobody thought.

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: joelsheffield-at-gmail.com
Date: Tue, 18 Jan 2011 16:20:08 -0600
Subject: [Microscopy] Ernst Ruska

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

In 1963, ten years after the papers were publlished, I joined the Lab
of Dan Moore, at Rockefeller. That lab, which had been Porter's until
he moved to Harvard, was located in the basement of Smith Hall, and
actually extended under 68th street. At any rate, I learned microtomy
on one of the mechanical advance microtomes that were built in the
machine shop --I still have it--, and there was also a thermal advance
version. The thermal advancement was provided by an incandescent
light bulb suspended over the cutting arm. You advanced the block by
flashing the light. As you might expect, the area around the
microtome was forbidden to others while it was in use. Any air
currents would disturb the whole process.

Joel

On Thu, Jan 13, 2011 at 5:26 PM, {NEERAJG-at-clemson.edu} wrote:
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
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}
} So I did a little digging on who reported thermal advance in ultramicrotomes first (not which commercial instruments came first) the original paper by Keith Porter and J. Blum published in 1953, A study in Microtomy for electron Microscopy, The Anatomical Record Volume 117, Issue 4, pages 685-709, December 1953, in it Porter and Blum describe two new mechanisms, one is a thermal expansion and the other is mechanical advancement (I have a PDF of this paper if anyone is interested). Here is an excerpt from the Summary of this paper
}
} 'Two new microtomes capable of cutting serial sections as thin as 25-50 mu are described. All moving parts in these instruments are supported in unlubricated pivots and the specimen is taken past the cutting edge only on the cutting stroke. These two features more than any others seem responsible for the successful performance of these microtomes. In one instrument, the prototype, the block is advanced to the knife by thermal expansion. In the other, the advancement is controlled mechanically.'
}
} Interestingly enough, Fritiof Sjostrand's paper, A new microtome for ultrathin sectioning for high resolution microscopy, 1953 Experientia 9:114-121 (note the paper also published in 1953) says 'The microtome reported on in this paper represents a further development of the microtome designed by Porter' (http://www.springerlink.com/content/y3267k5456j11117/).
}
} Also found an interesting book, Picture Control: The Electron Microscope and the Transformation of Biology in America by Nicolas Rasmussen, has some interesting history on this matter (see preview, http://books.google.com/books?id=rwC5QiqLS44C&pg=PA127&lpg=PA127&dq=Sjostrand+a+new+ultramicrotome&source=bl&ots=HCTXlObRJ-&sig=G46YfqxY8lrFtBptZDgmxIDbxuA&hl=en&ei=cHAvTfLRBsKSgQfMo-xa&sa=X&oi=book_result&ct=result&resnum=3&ved=0CCwQ6AEwAg#v=onepage&q&f=false
}
}
} Pretty Interesting!
}
} Best,
}
} Neeraj.
}
}
} Neeraj V. Gohad, Ph.D.
} Postdoctoral Fellow
} Okeanos Research Group
} Department of Biological Sciences
} 132 Long Hall
} Clemson University
} Clemson,SC-29634
} Phone: 864-656-3597
} Fax: 864-656-0435
}
} Website: http://www.clemson.edu/okeanos
}
}
}
}
}
}
}
}
}
}
}
} X-from: Paul Hazelton [mailto:hazeltn-at-cc.umanitoba.ca]
} Sent: Wednesday, January 12, 2011 4:09 PM
} To: Neeraj Gohad
} Subject: Re: [Microscopy] Ernst Ruska
}
} Neeraj et al
}
} To follow up on what Caroline said, thermal advance was first brought out by LKB, and I believe was developed by Sjostrand.
}
} Regards the Nobel Prize.  Story I heard but could never get confirmed was that the failure to give Ruska the prize before the 1980's started as political, proceeded to oversight, and in the end became an embarrassment.
}
} Ernst Ruska remained in Germany during WWII, and worked with the German war effort.  Please remember that one of the major uses of the microscope in Germany and the US was in the development of the atomic bomb.  Because of this, in the time leading up to, during and immediately after the war giving the prize to someone from Germany was not very acceptable.  This was the story to me in 1969, when I first started doing EM.  Ruska was, of course still alive, but as told, would not be a candidate for the prize.
}
} Over the ensuing years Ruska sort of got forgotten.  Then came the development of Scanning Tunneling EM.  In 1986, when the Academy was considering the award of the Prize in Physics to Binnig and Rohrer they realized, much to many people's chagrin, that Ruska had never been recognized.  Whatever his personal feelings may have been, his speech was gracious, and only said:
}
} "Here, I only want to emphasize my impression that the scanning tunnel electron microscopy of Gerd Binnig and Heinrich Rohrer has obviously been accepted much faster by scientific colleagues than electron microscopy fifty years ago."  (Ernst Ruska, Nobel Banquet Speech, December 10, 1986)
}
} Sadly, the failure to act in a more timely fashion meant that others such as Hans Busch and Max Knoll (the only names that jump to mind just now) did not also receive the recognition they deserved.
}
} Politics in the award of the Prize in all fields has been a long tradition.  It still carries on.  Witness the award of the Prize in Peace in 2009 to Barrack Obama, and the award of the Prize in Peace to Henry Kissinger in 1973, without recognition of Nixon, who, for all the wrong things he did, directed the negotiations which lead to the end of the Viet Nam war and ultimately deserved to share in this recognition.  And that is a  heck of a statement for someone considered to be politically to the left of centre.
}
} Paul Hazelton
}
} --
}
} Paul R. Hazelton, PhD
} Gastroenteric Diseases Study Group
} University of Manitoba
} Department of Medical Microbiology
} 511 Basic Medical Sciences Building
} 730 William Avenue
} Winnipeg, Manitoba, Canada, R3E 3J7
} e-mail:   paul_hazelton-at-umanitoba.ca
} Phone:       204-789-3313 (w)
}                 204-489-6924 (h)
} Cell:          204-781-6982
} Fax:          204-789-3926
}
}
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--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
jbs-at-temple.edu
(215) 204 8839, fax (215) 204 0486
http://astro.temple.edu/~jbs


==============================Original Headers==============================
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From: jehrman-at-mta.ca
Date: Wed, 19 Jan 2011 07:17:06 -0600
Subject: [Microscopy] Thanks! Re: Santovac 5? I need a few drops...

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thanks to all who replied with offers for some Santovac 5. I possibly
have a very local source, plus some other possibilities, so others who
were thinking of helping out are off the hook. Promised sacrifices to
the EM gods have already been offered. Just waiting now for the smoke to
clear...

As usual, the Listserv is an invaluable go-to source for all sorts of
goofy problems, esp. encountered in the wilds of the Great White North.

Cheers,

Jim


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

Directions: That useless little piece of paper,
containing incomprehensible language, usually
written in Spanish and Japanese, that one refers to,
only after botching the construction of the
over-priced and (also usually) useless item that
one found so necessary to own, only that very morning.


==============================Original Headers==============================
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From: Frank_Karl-at-lincolnelectric.com
Date: Wed, 19 Jan 2011 07:37:23 -0600
Subject: [Microscopy] EDS line scans and time on my hands

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


I’ve been thinking about EDS line scans and I’m attempting to maximize the
data I collect.

I run at 20 KV on iron samples so my electron interaction range is between
1.5 to 2.3um (Berthe or K-O range calculations). According to data
provided by EDAX at 1024 horizontal pixels each pixel is around 0.8 um at
700x. So right away I see if each image pixel represents a data point, I’m
sampling about 2 pixel volumes per data point. Looking for a sudden and
sharp change in element concentration seem difficult, but wait there’s
more. Let us introduce another plot complication.

My customers don’t want to scan the entire image, tooo much data…

So I scan a smaller section of image described above and instruct the
computer to take 512 data points along a line that might only be 400
(visual estimate from screen) image pixels long.

So… Should I reduce the image resolution so that each image pixel will be
one data point and scan the entire image? Would it be better to lower the
magnification so the image pixels are larger (say 1.2um ). I could go to
100x and 512 horizontal image pixel so each image pixel is 2.3um?

I’m looking for slight changes in element concentration at grain boundaries
and precipitates and of course I want to produce the most meaningful data
possible. I’m running at conditions that suggest my electron interactive
volume is larger than my spatial resolution as to produce “continuousâ€
data.

Or am I just over thinking the process?

Any suggestion or comments would be welcome

Frank
Lincoln Electric Company
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From: DOrloff-at-ascb.org
Date: Wed, 19 Jan 2011 08:25:59 -0600
Subject: [Microscopy] Cell Microscopy

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Interested in Cell Microscopy?

Join the LinkedIn Group at http://www.linkedin.com/groupRegistration?gid=3733425

And check out The Cell: An Image Library at www.cellimagelibrary.org.

David

David Orloff
Manager, Image Library
The American Society for Cell Biology
8120 Woodmont Avenue, Suite 750
Bethesda, MD 20814-2762
T: 301-347-9300/Direct: 301-347-9305
F: 301-347-9310
E-mail:  dorloff-at-ascb.org
Web site: www.ascb.org
The Cell: An Image LibraryT: www.cellimagelibrary.org




==============================Original Headers==============================
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9, 25 -- CC: David Orloff {DOrloff-at-ascb.org}
9, 25 -- Date: Wed, 19 Jan 2011 09:25:57 -0500
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From: jehrman-at-mta.ca
Date: Wed, 19 Jan 2011 08:33:21 -0600
Subject: [Microscopy] source of small amounts of Santovac 5

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For those who may find themselves in my predicament, Bart has small
quantities of Santovac 5 available:

Jim,

I have Santovac 5 in small glass vials. 30 drops for $10.

You might try just brushing out the lead screws with acetone and a paper
towel guard to collect the spray. That will disperse any residual
coagulated Santovac 5.

Though I've been on this list for almost its entire life, I can no longer
post to the group since I can't get through the spam filter.

You might consider posting this e-mail to the group.

Bart Cannon
Cannon Microprobe
1041 NE 100th
Seattle, WA 98125
206 522 9233


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

Directions: That useless little piece of paper,
containing incomprehensible language, usually
written in Spanish and Japanese, that one refers to,
only after botching the construction of the
over-priced and (also usually) useless item that
one found so necessary to own, only that very morning.


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From: patpxs-at-gmail.com
Date: Wed, 19 Jan 2011 11:07:36 -0600
Subject: [Microscopy] Fuji Pictrography 3000

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Hello Listers,

We are trying to revive a Fuji Pitctrography 3000. We have the SCSI
to USB adapters but the pc we have still does not see that the printer
is there. We are using a pc with the Vista opreating system (don't
start with the comments about that!) and the Fuji uses Photoshop
plug-ins.

Any suggestions as to what to try next to get this printer up and runing?

Thanks in advance.

Paula

--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#M251 Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.2091


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From: ewestbrook-at-vsu.edu
Date: Wed, 19 Jan 2011 14:32:23 -0600
Subject: [Microscopy] viaWWW: How do I remove front panels on Hitachi TM-1000

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Email: ewestbrook-at-vsu.edu
Name: Edwina Westbrook

Organization: Virginia State University

Title-Subject: [Filtered] How do I remove front panels on Hitachi TM-1000

Message: Hello All,
I need to remove the front panels on the Hitachi TM-1000 Tabletop
SEM. Has anyone done this? If so, please respond. This is not
easy! I want to have the turbo molecular pump serviced.
Thanks!
Winnie Westbrook, M.Ed.
Electron Microscopy Research Lab
Virginia State University
Petersburg, VA 23806
804-524-5659

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From: anthonyribaudo3-at-gmail.com
Date: Wed, 19 Jan 2011 14:32:53 -0600
Subject: [Microscopy] viaWWW: SEM imaging of wax

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Email: anthonyribaudo3-at-gmail.com
Name: Anthony Ribaudo

Organization: TRI Princeton

Title-Subject: [Filtered] SEM imaging of wax

Message: Can anyone suggest guidelines for imaging a paraffin wax
coating on a metal or polymeric substrate via FESEM. The plan is to
detect the wax layer that is thought to be several hundred nanometers
thick? Are there any waxes that would be more stable to image under
the electron beam than paraffin wax?

Anthony Ribaudo
TRI Princeton

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From: Fengxia.Liang-at-med.nyu.edu
Date: Wed, 19 Jan 2011 14:33:35 -0600
Subject: [Microscopy] Postdoc/research associate position available at NYU School

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A postdoc/research associate position supported by a newly renewed 5-year
NIH grant is available immediately in the Department of Biochemistry, NYU
School of Medicine. The research of the position focuses on structural
studies, using cryo-electron microscopy and electron tomography, of
uro-epithelial apical membrane and its receptor function for uropathogenic
E. coli (UPEC) in urinary tract infection (UTI) (see lab webpage:
http://kong.med.nyu.edu). Experience in electron microscopy and image
processing is desirable. Interested candidates should send CV and reference
information to xiangpeng.kong-at-med.nyu.edu.


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=================================



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From: z.zhou-at-lboro.ac.uk
Date: Wed, 19 Jan 2011 14:33:42 -0600
Subject: [Microscopy] viaWWW: TEM diffraction 3nm precipitates

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Email: z.zhou-at-lboro.ac.uk
Name: Zhou

Organization: Dept of Materials, Loughborough University, UK

Title-Subject: [Filtered] TEM diffraction 3nm precipitates

Message: Greetings listers,

Iím studying crystal structure of some
carbides/nitrides precipitates in steel. The
precipitates are 2-5nm size in a C replica TEM
specimen, V-, Cr-, and Nb-rich by STEM/EDX.

How can I get electron diffraction or crystal
structure information of these fine precipitates?

I tried on a TecnaiF20 TEM using nanoprobe spot
7, focused on a small particle, then diffraction,
most of the time I got amorphous rings of C
support, no obvious diffraction discs. STEM mode
did indicate some C contamination on the session.
Assuming minimal C contamination, is it possible
that this method can give me some sort of
convergence beam electron diffraction pattern,
which may help me determine the crystal structure
of the precipitates?

Iím also open to other methods.

Your advice is highly appreciated.

Zhou

Dr Zhaoxia Zhou
Dept of Materials
Loughborough University
Loughborough, UK
LE11 3TU


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From: sbarlow-at-sciences.sdsu.edu
Date: Wed, 19 Jan 2011 14:34:21 -0600
Subject: [Microscopy] viaWWW: color Laser printers

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Email: sbarlow-at-sciences.sdsu.edu
Name: Steve Barlow

Organization: SDSU EM Facility

Title-Subject: [Filtered] color Laser printers

Message: Hello All

Our general lab printer, a monochrome HP 2100, is on its last legs
and needs to be replaced, preferably with a color, duplex capable
printer.

We are looking at the Ricoh C430dn or the HP CP4525dn. We use the
lab printer for copy images, documentation of images. student
notebooks, etc.

I have had lots of experience with the HP printers, but none with
the Ricoh. Can anyone give me insights into their own experiences
with these two printers or the companies? Any other recommendations
for a laser printer?

Thanks in advance

Steve

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11, 22 -- Subject: viaWWW: color Laser printers
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From: dsherman-at-purdue.edu
Date: Wed, 19 Jan 2011 15:36:50 -0600
Subject: [Microscopy] Protocol for Norovirus TEM

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http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

We will be imaging a fairly large number of norovirus samples using negative
staining. This is just for sample screening to document the presence or
absence of the virus.

The samples could be sent in fresh but I thought it might be better to fix
them prior to shipping so that they are not a health hazard. That might also
allow us to store them unfrozen for an extended period of time (months) with
reduced chance of deterioration or contamination.

Does anyone have a validated protocol that they are willing to share? I
used to know someone at the CDC who did TEM but no longer have that contact.

Thanks,
Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/



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7, 28 -- From: "Sherman, Debra M" {dsherman-at-purdue.edu}
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7, 28 -- Date: Wed, 19 Jan 2011 16:36:46 -0500
7, 28 -- Subject: Protocol for Norovirus TEM
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From: abel.orellana-at-sydney.edu.au
Date: Wed, 19 Jan 2011 15:43:17 -0600
Subject: [Microscopy] viaWWW: University of Sydney - Career Opportunity ACMM

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Email: abel.orellana-at-sydney.edu.au
Name: Abel Orellana

Organization: University of Sydney

Title-Subject: [Filtered] University of Sydney - Career Opportunity

Message: GENERAL OFFICE ADMINISTRATOR
THE AUSTRALIAN CENTRE FOR MICROSCOPY AND MICROANALYSIS (ACMM)
REFERENCE NO. 2615 /0810

ï Be part of the largest Microscopy Facility of its type in Australia
ï Opportunity to work on newly emerging microscopy techniques
ï Remuneration package: $80,157

The University of Sydney is Australia's premier
University with an outstanding global reputation
for academic and research excellence, and employs
over 6,800 permanent staff supporting over 46,000
students.

The Australian Centre for Microscopy and
Microanalysis (ACMM) aims to provide leadership
in the development of innovation and ingenuity in
Australian science and engineering. The Centreís
vision is to be a world-leading facility for
modern microscopy and microanalysis, offering
premier instruments, services and training to
researchers from across Sydney and around
Australia, and providing strong leadership in the
national and international characterisation
communities.

We are currently seeking an experienced
Administrator to provide effective front desk and
administrative support to the main office of the
ACMM. Ideally suited to someone with an interest
in science, this is an excellent opportunity to
assist in the co-ordination of research
administration actives within research services.

You will be responsible for the professional
maintenance of the ACMM front desk, while being
first point-of contact for all queries. As such
it is imperative that you have excellent
communication and problem solving skills. The
position will see you co-ordinate and improve the
ACMM administration procedures including but not
limited to, arranging new user meetings; liaising
with users and visitors to the Centre in terms of
access; coordinating inductions for new staff and
students and providing support to the maintenance
of the Centreís website. Your demonstrated
ability to adapt to change and willingness to
undertake new tasks as the need arises will be
essential.

We are looking for a committed individual who
will thrive in a busy and changing environment.
To succeed, you will have previous experience
working in a busy office environment, existing
high level IT skills including creation of
spreadsheets, experience drafting and editing
reports along with experience producing high
level meeting minutes. You must also have
strong development and project management skills
and the ability to communicate with a diverse
range of individuals. Previous experience in a
Tertiary environment will be highly regarded.

The position is continuing subject to the
completion of a satisfactory probation period for
new appointees. Membership of a University
approved superannuation scheme is a condition of
employment for new appointees.

Remuneration package: a competitive remuneration
package is available of $80,157 (consisting of a
base salary $67,734, leave loading and up to 17%
employerís contribution to superannuation).

All applications must be submitted via The
University of Sydney careers website. Visit
sydney.edu.au/positions and search by the
reference number for more information and to
apply.


CLOSING DATE: 31 January 2011

The University is an Equal Opportunity employer
committed to equity, diversity and social
inclusion. Applications from equity target groups
and women are encouraged.


The University reserves the right not to proceed with any appointment.


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22, 24 -- From: abel.orellana-at-sydney.edu.au (by way of MicroscopyListserver)
22, 24 -- Subject: viaWWW: University of Sydney - Career Opportunity ACMM
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From: abel.orellana-at-sydney.edu.au
Date: Wed, 19 Jan 2011 15:44:11 -0600
Subject: [Microscopy] viaWWW: University of Sydney - Career Opportunity- SEM Specialist

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Email: abel.orellana-at-sydney.edu.au
Name: Abel Orellana

Organization: University of Sydney

Title-Subject: [Filtered] University of Sydney - Career Opportunity

Message: SCANNING ELECTRON MICROSCOPY SPECIALIST
THE AUSTRALIAN CENTRE FOR MICROSCOPY AND MICROANALYSIS (ACMM)
REFERENCE NO. 4273 /1210

ï Be part of the largest Microscopy Facility of its type in Australia
ï Opportunity to work on newly emerging microscopy techniques
ï Remuneration package: $80,157

The University of Sydney is Australia's premier
University with an outstanding global reputation
for academic and research excellence, and employs
over 6,800 permanent staff supporting over 46,000
students.

The Australian Centre for Microscopy and
Microanalysis (ACMM) aims to provide leadership
in the development of innovation and ingenuity in
Australian science and engineering. The Centreís
vision is to be a world-leading facility for
modern microscopy and microanalysis, offering
premier instruments, services and training to
researchers from across Sydney and around
Australia, and providing strong leadership in the
national and international characterisation
communities.

As the Scanning Electron Microscopy Specialist
you will provide instruction, training and
support to users of the Centre's analytical
scanning electron microscope facilities including
primarily the needs of users in specimen
preparation, microscopy, microanalysis,
image/data analysis and interpretation. You will
have demonstrated expertise and skills in
specimen preparation techniques relevant to
scanning electron microscopy (SEM) and associated
techniques and skills in one or more of the
following: focussed ion beam milling (FIB)
techniques; environmental SEM (ESEM), cryo-SEM
imaging; In-Situ SEM instrumentation; Electron
Backscattered Diffraction (EBSD); quantitative
image analysis; X-ray microanalysis, X-ray
mapping; Mineral phase mapping

To succeed, you will possess an Honours degree in
science or engineering whereas a doctoral degree
with a high SEM component will be highly
advantageous. You will be a self motivated
individual with exceptional scientific
communication skills and a demonstrated ability
to relate to students, users, academic and
researchers at all levels. Experience in running
and working in a multi-user laboratory and
experience with the instruction of SEM techniques
is desirable.

The position is full-time, fixed term for three
years subject to the completion of a satisfactory
probation period for new appointees with the
possibility of further offer of employment.
Membership of a University approved
superannuation scheme is a condition of
employment for new appointees. Visa sponsorship
and relocation assistance may be offered to
suitable overseas applicants. A wide range of
employment benefits are also available, including
Living Away From Home Allowance (LAFHA).

Remuneration package: a competitive remuneration
package is available of $80,157 (consisting of a
base salary $67,734, leave loading and up to 17%
employerís contribution to superannuation).

All applications must be submitted via The
University of Sydney careers website. Visit
sydney.edu.au/positions and search by the
reference number for more information and to
apply.

CLOSING DATE: 31 January 2011

The University is an Equal Opportunity employer
committed to equity, diversity and social
inclusion. Applications from equity target groups
and women are encouraged.

The University reserves the right not to proceed with any appointment.


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From: abel.orellana-at-sydney.edu.au
Date: Wed, 19 Jan 2011 15:45:53 -0600
Subject: [Microscopy] viaWWW: University of Sydney - Career Opportunity-AMMRF

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Email: a.o.orellana
Name: Abel Orellana

Organization: University of Sydney

Title-Subject: [Filtered] University of Sydney - Career Opportunity

Message: MULTIMEDIA COMMUNICATIONS OFFICER
AUSTRALIAN MICROSCOPY & MICROSCOPY RESEARCH FACILITY (AMMRF)
REFERENCE NO. 4239 /1210

ï Collaborate with AMMRF partners
ï Opportunity to work with a variety of Media Communications
ï Remuneration package: $80,157
ï
The University of Sydney is Australia's premier
University with an outstanding global reputation
for academic and research excellence, and employs
over 6,800 permanent staff supporting over 46,000
students.

The ACMM provides leadership in the development
and application of advanced microscopy and
microanalysis techniques that support innovation
in Australian science and engineering. The centre
incorporates a substantial research portfolio, is
a node of the ARC Centre if Excellence for Design
in Light Metals and is the headquarters for the
AMMRF, The AMMRF is Australiaís national research
facility for the characterisation of materials
through macro, meso, nano and atomic length
scales by means of advanced microscopy and
microanalysis. The facility is a joint venture of
eight universities, which forms a grid of
microscopy facilities with strategic links to six
other laboratories throughout Australia.

As the Multimedia Communications Officer you will
collaborate with AMMRF partners as well as teams
within the University of Sydney, to facilitate
and produce high-quality communications and
promotional outcomes. This will include the
creation, design and production of relevant
materials utilising a variety of media such as
written documents, presentations and the AMMRF
and ACMM websites. You will also assist in the
organisation and management of major events and
brand implementation for the AMMRF and the ACMM.

To be successful you must have previous
experience in the production of high quality
print and digital communications as well as the
ability to draft, edit and analyse print for
reports, publications and presentations. Your
experience and knowledge working with web
authoring, web design and graphic design software
as well your exceptional working knowledge of
Adobe Creative Suite Premium and Microsoft Office
is essential, as is the ability to build and
maintain effective working relationships.
Previous experience working in a scientific
organisation will be highly regarded.

The position is for 2.5 years, fixed term
subject to the completion of a satisfactory
probation period for new appointees with the
possibility of further offer of employment.
Membership of a University approved
superannuation scheme is a condition of
employment for new appointees.

Remuneration package: a competitive remuneration
package is available of $80,157 (consisting of a
base salary $67,734 leave loading and up to 17%
employerís contribution to superannuation).

All applications must be submitted via The
University of Sydney careers website. Visit
sydney.edu.au/positions and search by the
reference number for more information and to
apply.

CLOSING DATE: 31 January 2011

The University is an Equal Opportunity employer
committed to equity, diversity and social
inclusion. Applications from equity target groups
and women are encouraged.

Appointment is on merit; as women are
under-represented at this employment level
suitably qualified women are encouraged to apply.

The University reserves the right not to proceed with any appointment.


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From: rfoley-at-uab.edu
Date: Wed, 19 Jan 2011 16:50:11 -0600
Subject: [Microscopy] viaWWW: Environmental SEM for Biological Work

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Email: rfoley-at-uab.edu
Name: Robin Foley

Organization: UAB

Title-Subject: [Filtered] Environmental SEM for Biological Work

Message: Is there heavy use of ESEM for biological SEM? What is
commonly done on biological ESEM samples? We're looking at
purchasing an environmental SEM and the sales rep. tells us we will
need a Peltier stage to cool the sample to look at wet samples.
Unfortunately, the maximum sample size for the Peltier stage is 3 mm
across. This seems tiny to me for an SEM. Are there many biological
ESEM applications that don't require the sample to be wet?

Thanks,

Robin Foley (who spends most of her SEM time looking at metals,
ceramics and polymers!)




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From: David.Llewellyn-at-anu.edu.au
Date: Wed, 19 Jan 2011 17:02:00 -0600
Subject: [Microscopy] viaWWW: Tenupol-2 Electropolisher

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Email: David.Llewellyn-at-anu.edu.au
Name: David Llewellyn

Organization: Australian National University

Title-Subject: [Filtered] Tenupol-2 Electropolisher

Message: Am after some information re the Tenupol-2 and associated
Polypower Power Supply best of all would be off-line with somebody
who has one of these, thanks, David.

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From: rfklie-at-uic.edu
Date: Wed, 19 Jan 2011 17:18:47 -0600
Subject: [Microscopy] STEM post-doc position at UIC

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

*Post-Doctoral Research Associate Position in Aberration-Corrected STEM*

* *

A post-doctoral research associate position is available in the
Nanoscale Physics Group at the University of Illinois at Chicago to work
on the application of atomic-resolution Z-contrast and annular
bright-field imaging, as well as electron energy-loss spectroscopy
(EELS). The successful candidate will work with our new JEOL ARM200CF,
an aberration-corrected cold-field emission STEM with sub-Å and sub-eV
resolution, equipped with several in-situ holders.

Candidates should have a Ph.D. in Physics, Materials Science or related
disciplines. The position requires extensive experience in transmission
electron microscopy and electron energy-loss spectroscopy. Experience
working with aberration-corrected scanning transmission electron
microscopy is also preferred.

This postdoctoral position is available immediately, will be renewable
on an annual basis, and is anticipated for at least two years. The
position is open until it is filled.

Interested candidates can apply by email by sending a cover letter, CV
with a complete list of publications, and contact information of 3
professional references to:

Professor Robert F Klie

Department of Physics

University of Illinois at Chicago

845 W Taylor Street, M/C 273

Chicago, IL 60607

email: rfklie-at-uic.edu

--
Robert F. Klie, PhD
Assistant Professor
University of Illinois at Chicago
Department of Physics
Chicago, IL 60607
Tel: 312-996-6064
Fax: 312-996-9016

Editor
Journal of Undergraduate Research
Website {http://jur.phy.uic.edu}

President
Midwest Microscopy and Microanalysis Society (M^3 S)
Website {http://midwestmicroscopy.org}

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From: joelsheffield-at-gmail.com
Date: Wed, 19 Jan 2011 23:47:27 -0600
Subject: [Microscopy] Microtome History - was "Ernst Ruska"

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

It is certainly clear that there are many interesting stories --some
urban legends, and some insights into the minds of those that founded
the discipline of thin section electron microscopy. During the mid
'70's, I taught an EM course at Rutgers, Camden. In the basement,
along with an RCA EMU-2 (!) was a thermal advance microtome that I was
told was developed by Sjostrand. This thing consisted of a disk-like
plate, about 4-5 inches in diameter, with an eccentrically mounted arm
that stuck out of the plate. The arm had a chuck for a tissue sample,
and a heating coil. The plate itself was mounted in a frame and
lubricated with oil --the plate acted like a large oil bearing. The
plate was linked to a motor on the wall by a long V belt (to minimize
vibration), and the entire plate rotated, bringing the block past the
knife on each rotation. The sections that resulted tended to be arc
shaped. We got it working, but it was a terrifying thing to see. I
wonder if anyone in this group remembers this type of machine
--assuming that my description is comprehensible.

The other microtome that I used, and really admire, was the Huxley
microtome, originally sold by Cambridge, and ultimately marketed by
LKB. Although it used a mechanical advance, all of the movements of
the cutting arm were made by bending sheets of spring steel, so that
there were no surfaces that moved against each other. Moreover, the
cutting stroke was controlled by an oil-filled damper, to minimize
chatter. --a remarkable and stable machine.

Now, the urban legend. I had heard that a group (unnamed) was having
a vigorous discussion about the best way to strop a steel knife so as
to get the best edge for cutting thin sections. How many strokes, in
which direction, which side of the blade, etc. During the discussion,
a bottle of Coke was knocked off the table and broke into many pieces.
The story goes that one, or another, of these people took up one of
the shards, and suggested that it would make a good knife edge.
Verification anyone?

Joel

--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
jbs-at-temple.edu
(215) 204 8839, fax (215) 204 0486
http://astro.temple.edu/~jbs

==============================Original Headers==============================
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5, 30 -- Subject: Microtome History - was "Ernst Ruska"
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From: nizets2-at-yahoo.com
Date: Thu, 20 Jan 2011 02:23:23 -0600
Subject: [Microscopy] Microtome History - was "Ernst Ruska"

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This urban legend differs slightly according to the origin of the narrator:

An american talks about a bottle of coke.
A french talks about a bottle of ricard
A belgian talks about a flask of beer
An  italian talks about a bottle of wine
A german talks about a bottle of schnaps
A russian talks about a bottle of vodka.
A japanese talks about a bottle of sake

Actually it would be interesting to test all of them to see which one cuts
better.
Now you just need convincing words for your grant....

Stephane 




----- Original Message ----
X-from: "joelsheffield-at-gmail.com" {joelsheffield-at-gmail.com}
To: nizets2-at-yahoo.com
Sent: Thu, January 20, 2011 6:51:55 AM

It is certainly clear that there are many interesting stories --some
urban legends, and some insights into the minds of those that founded
the discipline of thin section electron microscopy.  During the mid
'70's, I taught an EM course at Rutgers, Camden.  In the basement,
along with an RCA EMU-2 (!) was a thermal advance microtome that I was
told was developed by Sjostrand.  This thing consisted of a disk-like
plate, about 4-5 inches in diameter, with an eccentrically mounted arm
that stuck out of the plate.  The arm had a chuck for a tissue sample,
and a heating coil.  The plate itself was mounted in a frame and
lubricated with oil --the plate acted like a large oil bearing.  The
plate was linked to a motor on the wall by a long V belt (to minimize
vibration), and the entire plate rotated, bringing the block past the
knife on each rotation.  The sections that resulted tended to be arc
shaped.  We got it working, but it was a terrifying thing to see.  I
wonder if anyone in this group remembers this type of machine
--assuming that my description is comprehensible.

The other microtome that I used, and really admire, was the Huxley
microtome, originally sold by Cambridge, and ultimately marketed by
LKB.  Although it used a mechanical advance, all of the movements of
the cutting arm were made by bending sheets of spring steel, so that
there were no surfaces that moved against each other.  Moreover, the
cutting stroke was controlled by an oil-filled damper, to minimize
chatter. --a remarkable and stable machine.

Now, the urban legend.  I had heard that a group (unnamed) was having
a vigorous discussion about the best way to strop a steel knife so as
to get the best edge for cutting thin sections.  How many strokes, in
which direction, which side of the blade, etc.  During the discussion,
a bottle of Coke was knocked off the table and broke into many pieces.
The story goes that one, or another, of these people took up one of
the shards, and suggested that it would make a good knife edge.
Verification anyone?

Joel

--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
jbs-at-temple.edu
(215) 204 8839, fax (215) 204 0486
http://astro.temple.edu/~jbs

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5, 30 -- Subject: Microtome History - was "Ernst Ruska"
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From: W.Muss-at-salk.at
Date: Thu, 20 Jan 2011 04:47:01 -0600
Subject: [Microscopy] Re: Microtome History - was "Ernst Ruska"

Contents Retrieved from Microscopy Listserver Archives
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Von: Muß Wolfgang
Gesendet: Donnerstag, 20. Jänner 2011 11:46
An: 'joelsheffield-at-gmail.com'
Cc: 'microscopy-at-microscopy.com'
Betreff: Re: [Microscopy] Microtome History - was "Ernst Ruska"


Joel wrote:
} Now, the urban legend. 
I had heard that a group (unnamed) was having a vigorous discussion about the best way to strop a steel knife so as to get the best edge for cutting thin sections.  How many strokes, in which direction, which side of the blade, etc.  During the discussion, a bottle of Coke was knocked off the table and broke into many pieces. 
The story goes that one, or another, of these people took up one of the shards, and suggested that it would make a good knife edge. Verification anyone? {

Joel


Good morning,
Dear Joel, dear all

I can't tell or verify the above mentioned "Coke-shard-story" but - indeed - I can add information as to the "knocked off table"-part....

I had always heared (personal informations from elder REICHERT-freaks and service people, from lectures/lecturers in the 70ies and 80ies as well as personally from H. Sitte himself) that the group around H. SITTE at REICHERT (now LEICA) in the late 1950ies/60ies was/were doing such experiments with {glass plates} .... which were thrown down to the floor... and one of them (it was Sitte himself, as he told me) picked up the shards evaluating the edges of "the most promising one" for sectioning purposes (who of that group had the "invention" to use glass as a} crude { knife (element) I unfortunately don't know.

By the way, digging a little bit on this in Google, I found one hint on a document in a German data bank at
==} http://finden.nationallizenzen.de/Author/Home?author=Sitte%2C%20H. 

{Ein einfaches Ultramikrotom mit thermischem Vorschub} veröffentlicht
("A simple ultramicrotome with thermal advance" published)
in: Naturwissenschaften , ISSN 1432-1904, Vol. 42 (12. 1955), p. 367-367

Note:  {Naturwissenschaften} is the former title of      Biomedical and Life Sciences  (SPRINGER)
Another source:  http://www.freepatentsonline.com/3828641.html:
United States Patent US3828641:

==} Apparatus for adjusting the elevation of a specimen in microtomes, particularly ultramicrotomes
Inventor:  Hellmuth Sitte, HOMBURG (not Humburg [as written in the patent document!]/Saar Germany)
Assignee:  C.Reichert Optische Werke AG, Vienna, Austria)
Filed:  Nov. 10,1972

Also see http://books.google.at/books?id=JULNEc9rmUUC&pg=PA154&lpg=PA154&dq=Sitte+and+ultramicrotome&source=bl&ots=jTsBEi9KOU&sig=EbNY_Cfv_isjcFo8MhMpJfl5Jb8&hl=de&ei=aAs4Tf_AIp2ShAfA-tmMCg&sa=X&oi=book_result&ct=result&resnum=2&ved=0CCEQ6AEwAQ#v=onepage&q=Sitte%20and%20ultramicrotome&f=false
(From the book Michael J. Dykstra, Laura E. Reuss - 2003  (see page "History: in the text displayed
the Reichert OMU-1 (before 1964, perhaps see document above in {Naturwissenschaften} 1955) from Sitte described as having thermal advance, Sitte was never happy with, since 1964: OMU-2 with thermal advance....

This just for your pleasure....
(and I sure that searching for Sitte Hellmuth or Sitte and microtome will find some results more on that interesting and exciting "history" of ultramicrotomy advances.....

Best wishes and regards,
have a good and successful rest of the week and a beautiful weekend,

Wolfgang MUSS (Ph.D.)
EM-Lab Gen.Hosp. SALK-LKH
SALZBURG
AUSTRIA







} -----Ursprüngliche Nachricht-----
} Von: joelsheffield-at-gmail.com [mailto:joelsheffield-at-gmail.com]
} Gesendet: Donnerstag, 20. Jänner 2011 06:51
} An: Muß Wolfgang
} Betreff: [Microscopy] Microtome History - was "Ernst Ruska"
}
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}
} It is certainly clear that there are many interesting stories --some
} urban legends, and some insights into the minds of those that founded
} the discipline of thin section electron microscopy.
} During the mid '70's, I taught an EM course at Rutgers, Camden.
} In the basement, along with an RCA EMU-2 (!) was a thermal advance
} microtome that I was told was developed by Sjostrand.
} This thing consisted of a disk-like plate, about 4-5 inches in
} diameter, with an eccentrically mounted arm that stuck out of the
} plate.  The arm had a chuck for a tissue sample, and a heating coil.
} The plate itself was mounted in a frame and lubricated with oil --the
} plate acted like a large oil bearing.  The plate was linked to a motor
} on the wall by a long V belt (to minimize vibration), and the entire
} plate rotated, bringing the block past the knife on each rotation.  The
} sections that resulted tended to be arc shaped.  We got it working, but
} it was a terrifying thing to see.  I wonder if anyone in this group
} remembers this type of machine -- assuming that my description is
} comprehensible.
}
} The other microtome that I used, and really admire, was the Huxley
} microtome, originally sold by Cambridge, and ultimately marketed by
} LKB.  Although it used a mechanical advance, all of the movements of
} the cutting arm were made by bending sheets of spring steel, so that
} there were no surfaces that moved against each other.  Moreover, the
} cutting stroke was controlled by an oil-filled damper, to minimize
} chatter. -- a remarkable and stable machine.
}
} Now, the urban legend.
} I had heard that a group (unnamed) was having a vigorous discussion
} about the best way to strop a steel knife so as to get the best edge
} for cutting thin sections.  How many strokes, in which direction, which
} side of the blade, etc.  During the discussion, a bottle of Coke was
} knocked off the table and broke into many pieces.
} The story goes that one, or another, of these people took up one of the
} shards, and suggested that it would make a good knife edge.
} Verification anyone?
}
} Joel
}
} --
} Joel B. Sheffield, Ph.D.
} Biology Department, Temple University
} 1900 North 12th Street
} Philadelphia, PA 19122
} jbs-at-temple.edu
} (215) 204 8839, fax (215) 204 0486
} http://astro.temple.edu/~jbs
}
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} 5, 30 -- Subject: Microtome History - was "Ernst Ruska"
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From: David.Patton-at-uwe.ac.uk
Date: Thu, 20 Jan 2011 05:52:55 -0600
Subject: [Microscopy] viaWWW: Environmental SEM for Biological Work

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Our Philips (now FEI) XL30 ESEM has a Peltier stage which takes stubs about 10mm in diameter.

You can use our ESEM without cooling for eg materials samples but we you want liquid water for biological samples we cool to 5 degrees and 6.5 Torr. I have heard that the newer Quanta ESEMs can have a chamber pressure up to 20 Torr (cf 10 Torr for the XL30 ESEM). This allows water to be observed without cooling, I believe.

Does anyone know if this means the sample can be any size one likes?

Dave

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Email: rfoley-at-uab.edu
Name: Robin Foley

Organization: UAB

Title-Subject: [Filtered] Environmental SEM for Biological Work

Message: Is there heavy use of ESEM for biological SEM? What is
commonly done on biological ESEM samples? We're looking at
purchasing an environmental SEM and the sales rep. tells us we will
need a Peltier stage to cool the sample to look at wet samples.
Unfortunately, the maximum sample size for the Peltier stage is 3 mm
across. This seems tiny to me for an SEM. Are there many biological
ESEM applications that don't require the sample to be wet?

Thanks,

Robin Foley (who spends most of her SEM time looking at metals,
ceramics and polymers!)




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From: lovett-at-tcnj.edu
Date: Thu, 20 Jan 2011 08:19:13 -0600
Subject: [Microscopy] Early microtomy--urban legend?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Fellow microscopists:

I was taught decades ago that early ultrathin sections were made in the
following manner:

A sheet of plate glass was dropped on the floor. The shard with the
best edge was selected and attached to the blade of a small window fan.
The resin-embedded specimen was attached to the tip of a soldering
iron. once everything was clamped and aligned, the fan was turned on,
the soldering iron was plugged in, and the section were collected in a
large pan of water held beneath the fan. (As the soldering iron heated,
the thermal expansion advanced the specimen into the glass blade.)
Sections of optimal thickness were selected from those floating in the
pan on the basis of the color refracted.

I love the story. Does anyone know whether this even approaches a true
story?

Thanks,

Don

P.S. Anyone still alive who has first-hand knowledge of this story
would be pretty old by now, but I thought that I would give this a shot.

--

Donald L. Lovett e-mail: lovett-at-tcnj.edu
Professor and Chairperson phone: 609-771-2876
Department of Biology fax: 609-637-5118
The College of New Jersey
P.O. Box 7718
Ewing, NJ 08628-0718


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From: kenconverse-at-qualityimages.biz
Date: Thu, 20 Jan 2011 08:33:16 -0600
Subject: [Microscopy] viaWWW: SEM imaging of wax

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Anthony,
If you don't have a cold stage on the FESEM, I would suggest finding some
faithful old tungsten SEM that can stand the abuse of wax evaporating under
the beam. That will also go a long way towards staying in the good graces
of whoever is in charge of the FESEM.

If you have a cold stage, then others on the list can probably give you some
help on that score.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
Fax 207-647-2688
kenconverse-at-qualityimages.biz
qualityimages.biz


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Email: anthonyribaudo3-at-gmail.com
Name: Anthony Ribaudo

Organization: TRI Princeton

Title-Subject: [Filtered] SEM imaging of wax

Message: Can anyone suggest guidelines for imaging a paraffin wax
coating on a metal or polymeric substrate via FESEM. The plan is to
detect the wax layer that is thought to be several hundred nanometers
thick? Are there any waxes that would be more stable to image under
the electron beam than paraffin wax?

Anthony Ribaudo
TRI Princeton

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From: PhillipsT-at-missouri.edu
Date: Thu, 20 Jan 2011 08:54:00 -0600
Subject: [Microscopy] Early microtomy--urban legend?

Contents Retrieved from Microscopy Listserver Archives
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I have heard all the microtome and glass knives stories also but have no evidence to their veracity. But I once was talking to Sanford Palay - an early pioneer in EM - and he told me how they used a rubber hammer to tap the outside of the TEM column to try and nudge the aperture into place. I can't imagine how tedious that must have been. Of course, the reward the pioneers all got from primitive microtomy and TEMs was that they got to discover amazing new things of a bigger magnitude than most of the incremental advances we all get to contribute to these days. But I think I would rather have done science then rather than now when high cost forces specialization and a greater proportion of time is devoted to finding funding rather than organelles. Tom

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: lovett-at-tcnj.edu [mailto:lovett-at-tcnj.edu]
Sent: Thursday, January 20, 2011 8:20 AM
To: Phillips, Thomas E.

Fellow microscopists:

I was taught decades ago that early ultrathin sections were made in the
following manner:

A sheet of plate glass was dropped on the floor. The shard with the
best edge was selected and attached to the blade of a small window fan.
The resin-embedded specimen was attached to the tip of a soldering
iron. once everything was clamped and aligned, the fan was turned on,
the soldering iron was plugged in, and the section were collected in a
large pan of water held beneath the fan. (As the soldering iron heated,
the thermal expansion advanced the specimen into the glass blade.)
Sections of optimal thickness were selected from those floating in the
pan on the basis of the color refracted.

I love the story. Does anyone know whether this even approaches a true
story?

Thanks,

Don

P.S. Anyone still alive who has first-hand knowledge of this story
would be pretty old by now, but I thought that I would give this a shot.

--

Donald L. Lovett e-mail: lovett-at-tcnj.edu
Professor and Chairperson phone: 609-771-2876
Department of Biology fax: 609-637-5118
The College of New Jersey
P.O. Box 7718
Ewing, NJ 08628-0718


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From: bkang-at-ufl.edu
Date: Thu, 20 Jan 2011 08:54:46 -0600
Subject: [Microscopy] Postdoctoral Research Associate Position available at the University of Florida

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear listers,

The University of Florida, College of Medicine, Department of Biochemistry and Molecular Biology seeks an enthusiastic Ph.D. level structural biologist, with experience in the area of cryo-electron microscopy and/or X-ray crystallography and image reconstruction to work on the structure of ssDNA virus proteins and intact capsids. The position will require knowledge of molecular biology, biochemistry, and structural biology approaches. Training can be provided, as needed, but a basic knowledge of the technical aspects of these approaches is required. In addition, projects in the lab often require collaborative effort, thus an ability/desire to work in a group setting is preferable. Salary will be negotiable and commensurate with experience. Interested applicants should send their Curriculum Vitae plus the names of three individuals who can provide a letter of reference to Dr. Mavis Agbandje-McKenna, Department of Biochemistry and Molecular Biology, 1600 SW Archer Road, PO
Box 100245, Gainesville, FL 32610-0245 or email to mckenna-at-ufl.edu . The University of Florida is an Equal Opportunity Employee.

Thanks,

Byung-Ho Kang, Ph.D.
Assistant Professor, Microbiology and Cell Science
Director, Electron Microscopy and Bioimaging Lab, Interdisciplinary Center for Biotechnology Research
University of Florida Gainesville, FL 32611
Tel: 352-846-0952
Fax: 352-392-5922



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From: nizets2-at-yahoo.com
Date: Thu, 20 Jan 2011 08:56:22 -0600
Subject: [Microscopy] viaWWW: SEM imaging of wax

Contents Retrieved from Microscopy Listserver Archives
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Just a question disguised in an answer: wouldn't it be the right application to
make a replica?

Stephane


----- Original Message ----
X-from: "anthonyribaudo3-at-gmail.com" {anthonyribaudo3-at-gmail.com}
To: nizets2-at-yahoo.com
Sent: Wed, January 19, 2011 9:39:49 PM

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at  http://www.microscopy.com/MLFormMail.html
---------------------------------------------------------------------------
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Email: anthonyribaudo3-at-gmail.com
Name: Anthony Ribaudo

Organization: TRI Princeton

Title-Subject: [Filtered] SEM imaging of wax

Message: Can anyone suggest guidelines for imaging a paraffin wax
coating on a metal or polymeric substrate via FESEM. The plan is to
detect the wax layer that is thought to be several hundred nanometers
thick? Are there any waxes that would be more stable to image under
the electron beam than paraffin wax?

Anthony Ribaudo
TRI Princeton

  Login Host: 108.5.140.150
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From: paul_hazelton-at-umanitoba.ca
Date: Thu, 20 Jan 2011 09:36:45 -0600
Subject: [Microscopy] Early microtomy--urban legend?

Contents Retrieved from Microscopy Listserver Archives
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Forgot how much fun these discussions of the "old days" can be. At
Washington University there was an old Seimens microscope. At the time
I was training as a tech, and using the microscope was not an option.
However, the man who trained me, Charles Kuhn, told me that one of the
microscopes he had used, and I believe he was referring to the old
Seimens at WU, had to be aligned using a rubber mallet. Never did it
personally, but was regaled with stories by one who did.

paul
--
Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: oshel1pe-at-cmich.edu
Date: Thu, 20 Jan 2011 09:53:22 -0600
Subject: [Microscopy] Re: Microtome History - was "Ernst Ruska"

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I know at least 2 old microscopists who made
glass knifes by breaking window glass - one of
them here at CMU. He went to construction sites
to get the broken windows.

I'm running down the reference and (I hope) an
image, but one of the early tries at
ultramicrotomy was sticking razor blades on a
centrifuge rotor, then mount the sections on the
tub, close the lid and turn on the centrifuge.
The sections where then picked up from inside the
tub, having been flung willy-nilly around the
inside.
(The image is used in the microtomy lecture to
convince the students thin sectioning could be a
lot worse than they think it is.)

Phil

} Von: Muþ Wolfgang
} Gesendet: Donnerstag, 20. J”nner 2011 11:46
} An: 'joelsheffield-at-gmail.com'
} Cc: 'microscopy-at-microscopy.com'
} Betreff: Re: [Microscopy] Microtome History - was "Ernst Ruska"
}
}
} Joel wrote:
} } Now, the urban legend.Ý
} I had heard that a group (unnamed) was having a
} vigorous discussion about the best way to strop
} a steel knife so as to get the best edge for
} cutting thin sections.Ý How many strokes, in
} which direction, which side of the blade, etc.Ý
} During the discussion, a bottle of Coke was
} knocked off the table and broke into many
} pieces.Ý
} The story goes that one, or another, of these
} people took up one of the shards, and suggested
} that it would make a good knife edge.
} Verification anyone? {
}
} Joel
}
}
} Good morning,
} Dear Joel, dear all
}
} I can't tell or verify the above mentioned
} "Coke-shard-story" but - indeed - I can add
} information as to the "knocked off
} table"-part....
}
} I had always heared (personal informations from
} elder REICHERT-freaks and service people, from
} lectures/lecturers in the 70ies and 80ies as
} well as personally from H. Sitte himself) that
} the group around H. SITTE at REICHERT (now
} LEICA) in the late 1950ies/60ies was/were doing
} such experiments with {glass plates} .... which
} were thrown down to the floor... and one of them
} (it was Sitte himself, as he told me) picked up
} the shards evaluating the edges of "the most
} promising one" for sectioning purposes (who of
} that group had the "invention" to use glass as
} a} crude { knife (element) I unfortunately don't
} know.
}
} By the way, digging a little bit on this in
} Google, I found one hint on a document in a
} German data bank at
} ==} http://finden.nationallizenzen.de/Author/Home?author=Sitte%2C%20H.Ý
}
} {Ein einfaches Ultramikrotom mit thermischem Vorschub} ver–ffentlicht
} ("A simple ultramicrotome with thermal advance" published)
} in: Naturwissenschaften , ISSN 1432-1904, Vol. 42 (12. 1955), p. 367-367
}
} Note:Ý {Naturwissenschaften} is the former title
} ofÝÝÝÝÝ Biomedical and Life SciencesÝ (SPRINGER)
} Another source:Ý http://www.freepatentsonline.com/3828641.html:
} United States Patent US3828641:
}
} ==} Apparatus for adjusting the elevation of a
} specimen in microtomes, particularly
} ultramicrotomes
} Inventor:Ý Hellmuth Sitte, HOMBURG (not Humburg
} [as written in the patent document!]/Saar
} Germany)
} Assignee:Ý C.Reichert Optische Werke AG, Vienna, Austria)
} Filed:Ý Nov. 10,1972
}
} Also see
} http://books.google.at/books?id=JULNEc9rmUUC&pg=PA154&lpg=PA154&dq=Sitte+and+ultramicrotome&source=bl&ots=jTsBEi9KOU&sig=EbNY_Cfv_isjcFo8MhMpJfl5Jb8&hl=de&ei=aAs4Tf_AIp2ShAfA-tmMCg&sa=X&oi=book_result&ct=result&resnum=2&ved=0CCEQ6AEwAQ#v=onepage&q=Sitte%20and%20ultramicrotome&f=false
} (From the book Michael J. Dykstra, Laura E.
} Reuss - 2003Ý (see page "History: in the text
} displayed
} the Reichert OMU-1 (before 1964, perhaps see
} document above in {Naturwissenschaften} 1955)
} from Sitte described as having thermal advance,
} Sitte was never happy with, since 1964: OMU-2
} with thermal advance....
}
} This just for your pleasure....
} (and I sure that searching for Sitte Hellmuth or
} Sitte and microtome will find some results more
} on that interesting and exciting "history" of
} ultramicrotomy advances.....
}
} Best wishes and regards,
} have a good and successful rest of the week and a beautiful weekend,
}
} Wolfgang MUSS (Ph.D.)
} EM-Lab Gen.Hosp. SALK-LKH
} SALZBURG
} AUSTRIA
}
}
}
}
}
}
}
} } -----Urspr¸ngliche Nachricht-----
} } Von: joelsheffield-at-gmail.com [mailto:joelsheffield-at-gmail.com]
} } Gesendet: Donnerstag, 20. J”nner 2011 06:51
} } An: Muþ Wolfgang
} } Betreff: [Microscopy] Microtome History - was "Ernst Ruska"
} }
} } -----------------------------------------------------------------------
} } -----
} } The Microscopy ListServer -- CoSponsor:Ý The Microscopy Society of
} } America
} } ToÝ Subscribe/Unsubscribe --
} } http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } -----------------------------------------------------------------------
} } -----
} }
} } It is certainly clear that there are many interesting stories --some
} } urban legends, and some insights into the minds of those that founded
} } the discipline of thin section electron microscopy.
} } During the mid '70's, I taught an EM course at Rutgers, Camden.
} } In the basement, along with an RCA EMU-2 (!) was a thermal advance
} } microtome that I was told was developed by Sjostrand.
} } This thing consisted of a disk-like plate, about 4-5 inches in
} } diameter, with an eccentrically mounted arm that stuck out of the
} } plate.Ý The arm had a chuck for a tissue sample, and a heating coil.
} } The plate itself was mounted in a frame and lubricated with oil --the
} } plate acted like a large oil bearing.Ý The plate was linked to a motor
} } on the wall by a long V belt (to minimize vibration), and the entire
} } plate rotated, bringing the block past the knife on each rotation.Ý The
} } sections that resulted tended to be arc shaped.Ý We got it working, but
} } it was a terrifying thing to see.Ý I wonder if anyone in this group
} } remembers this type of machine -- assuming that my description is
} } comprehensible.
} }
} } The other microtome that I used, and really admire, was the Huxley
} } microtome, originally sold by Cambridge, and ultimately marketed by
} } LKB.Ý Although it used a mechanical advance, all of the movements of
} } the cutting arm were made by bending sheets of spring steel, so that
} } there were no surfaces that moved against each other.Ý Moreover, the
} } cutting stroke was controlled by an oil-filled damper, to minimize
} } chatter. -- a remarkable and stable machine.
} }
} } Now, the urban legend.
} } I had heard that a group (unnamed) was having a vigorous discussion
} } about the best way to strop a steel knife so as to get the best edge
} } for cutting thin sections.Ý How many strokes, in which direction, which
} } side of the blade, etc.Ý During the discussion, a bottle of Coke was
} } knocked off the table and broke into many pieces.
} } The story goes that one, or another, of these people took up one of the
} } shards, and suggested that it would make a good knife edge.
} } Verification anyone?
} }
} } Joel
} }
} } --
} } Joel B. Sheffield, Ph.D.
} } Biology Department, Temple University
} } 1900 North 12th Street
} } Philadelphia, PA 19122
} } jbs-at-temple.edu
} } (215) 204 8839, fax (215) 204 0486
} } http://astro.temple.edu/~jbs

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576


==============================Original Headers==============================
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From: PhillipsT-at-missouri.edu
Date: Thu, 20 Jan 2011 10:20:18 -0600
Subject: [Microscopy] Re: Microtome History - was "Ernst Ruska"

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I just remembered seeing a print ad from some science journal published the 40's or 50's (before my time!) for an early ultramicrotome. It was a high speed motor spinning some type of blade. The concept was that the block was advanced into this buzzsaw and you were supposed to catch the sections flying off. At the time I think the view was that ultrathins could only be cut at high speed. The real kicker was the ad mentioned the motor was also suitable for use in centrifuges. Crazy. Tom


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: oshel1pe-at-cmich.edu [mailto:oshel1pe-at-cmich.edu]
Sent: Thursday, January 20, 2011 9:54 AM
To: Phillips, Thomas E.

I know at least 2 old microscopists who made
glass knifes by breaking window glass - one of
them here at CMU. He went to construction sites
to get the broken windows.

I'm running down the reference and (I hope) an
image, but one of the early tries at
ultramicrotomy was sticking razor blades on a
centrifuge rotor, then mount the sections on the
tub, close the lid and turn on the centrifuge.
The sections where then picked up from inside the
tub, having been flung willy-nilly around the
inside.
(The image is used in the microtomy lecture to
convince the students thin sectioning could be a
lot worse than they think it is.)

Phil

} Von: Muþ Wolfgang
} Gesendet: Donnerstag, 20. J"nner 2011 11:46
} An: 'joelsheffield-at-gmail.com'
} Cc: 'microscopy-at-microscopy.com'
} Betreff: Re: [Microscopy] Microtome History - was "Ernst Ruska"
}
}
} Joel wrote:
} } Now, the urban legend.Ý
} I had heard that a group (unnamed) was having a
} vigorous discussion about the best way to strop
} a steel knife so as to get the best edge for
} cutting thin sections.Ý How many strokes, in
} which direction, which side of the blade, etc.Ý
} During the discussion, a bottle of Coke was
} knocked off the table and broke into many
} pieces.Ý
} The story goes that one, or another, of these
} people took up one of the shards, and suggested
} that it would make a good knife edge.
} Verification anyone? {
}
} Joel
}
}
} Good morning,
} Dear Joel, dear all
}
} I can't tell or verify the above mentioned
} "Coke-shard-story" but - indeed - I can add
} information as to the "knocked off
} table"-part....
}
} I had always heared (personal informations from
} elder REICHERT-freaks and service people, from
} lectures/lecturers in the 70ies and 80ies as
} well as personally from H. Sitte himself) that
} the group around H. SITTE at REICHERT (now
} LEICA) in the late 1950ies/60ies was/were doing
} such experiments with {glass plates} .... which
} were thrown down to the floor... and one of them
} (it was Sitte himself, as he told me) picked up
} the shards evaluating the edges of "the most
} promising one" for sectioning purposes (who of
} that group had the "invention" to use glass as
} a} crude { knife (element) I unfortunately don't
} know.
}
} By the way, digging a little bit on this in
} Google, I found one hint on a document in a
} German data bank at
} ==} http://finden.nationallizenzen.de/Author/Home?author=Sitte%2C%20H.Ý
}
} {Ein einfaches Ultramikrotom mit thermischem Vorschub} ver-ffentlicht
} ("A simple ultramicrotome with thermal advance" published)
} in: Naturwissenschaften , ISSN 1432-1904, Vol. 42 (12. 1955), p. 367-367
}
} Note:Ý {Naturwissenschaften} is the former title
} ofÝÝÝÝÝ Biomedical and Life SciencesÝ (SPRINGER)
} Another source:Ý http://www.freepatentsonline.com/3828641.html:
} United States Patent US3828641:
}
} ==} Apparatus for adjusting the elevation of a
} specimen in microtomes, particularly
} ultramicrotomes
} Inventor:Ý Hellmuth Sitte, HOMBURG (not Humburg
} [as written in the patent document!]/Saar
} Germany)
} Assignee:Ý C.Reichert Optische Werke AG, Vienna, Austria)
} Filed:Ý Nov. 10,1972
}
} Also see
} http://books.google.at/books?id=JULNEc9rmUUC&pg=PA154&lpg=PA154&dq=Sitte+and+ultramicrotome&source=bl&ots=jTsBEi9KOU&sig=EbNY_Cfv_isjcFo8MhMpJfl5Jb8&hl=de&ei=aAs4Tf_AIp2ShAfA-tmMCg&sa=X&oi=book_result&ct=result&resnum=2&ved=0CCEQ6AEwAQ#v=onepage&q=Sitte%20and%20ultramicrotome&f=false
} (From the book Michael J. Dykstra, Laura E.
} Reuss - 2003Ý (see page "History: in the text
} displayed
} the Reichert OMU-1 (before 1964, perhaps see
} document above in {Naturwissenschaften} 1955)
} from Sitte described as having thermal advance,
} Sitte was never happy with, since 1964: OMU-2
} with thermal advance....
}
} This just for your pleasure....
} (and I sure that searching for Sitte Hellmuth or
} Sitte and microtome will find some results more
} on that interesting and exciting "history" of
} ultramicrotomy advances.....
}
} Best wishes and regards,
} have a good and successful rest of the week and a beautiful weekend,
}
} Wolfgang MUSS (Ph.D.)
} EM-Lab Gen.Hosp. SALK-LKH
} SALZBURG
} AUSTRIA
}
}
}
}
}
}
}
} } -----Urspr¸ngliche Nachricht-----
} } Von: joelsheffield-at-gmail.com [mailto:joelsheffield-at-gmail.com]
} } Gesendet: Donnerstag, 20. J"nner 2011 06:51
} } An: Muþ Wolfgang
} } Betreff: [Microscopy] Microtome History - was "Ernst Ruska"
} }
} } -----------------------------------------------------------------------
} } -----
} } The Microscopy ListServer -- CoSponsor:Ý The Microscopy Society of
} } America
} } ToÝ Subscribe/Unsubscribe --
} } http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } -----------------------------------------------------------------------
} } -----
} }
} } It is certainly clear that there are many interesting stories --some
} } urban legends, and some insights into the minds of those that founded
} } the discipline of thin section electron microscopy.
} } During the mid '70's, I taught an EM course at Rutgers, Camden.
} } In the basement, along with an RCA EMU-2 (!) was a thermal advance
} } microtome that I was told was developed by Sjostrand.
} } This thing consisted of a disk-like plate, about 4-5 inches in
} } diameter, with an eccentrically mounted arm that stuck out of the
} } plate.Ý The arm had a chuck for a tissue sample, and a heating coil.
} } The plate itself was mounted in a frame and lubricated with oil --the
} } plate acted like a large oil bearing.Ý The plate was linked to a motor
} } on the wall by a long V belt (to minimize vibration), and the entire
} } plate rotated, bringing the block past the knife on each rotation.Ý The
} } sections that resulted tended to be arc shaped.Ý We got it working, but
} } it was a terrifying thing to see.Ý I wonder if anyone in this group
} } remembers this type of machine -- assuming that my description is
} } comprehensible.
} }
} } The other microtome that I used, and really admire, was the Huxley
} } microtome, originally sold by Cambridge, and ultimately marketed by
} } LKB.Ý Although it used a mechanical advance, all of the movements of
} } the cutting arm were made by bending sheets of spring steel, so that
} } there were no surfaces that moved against each other.Ý Moreover, the
} } cutting stroke was controlled by an oil-filled damper, to minimize
} } chatter. -- a remarkable and stable machine.
} }
} } Now, the urban legend.
} } I had heard that a group (unnamed) was having a vigorous discussion
} } about the best way to strop a steel knife so as to get the best edge
} } for cutting thin sections.Ý How many strokes, in which direction, which
} } side of the blade, etc.Ý During the discussion, a bottle of Coke was
} } knocked off the table and broke into many pieces.
} } The story goes that one, or another, of these people took up one of the
} } shards, and suggested that it would make a good knife edge.
} } Verification anyone?
} }
} } Joel
} }
} } --
} } Joel B. Sheffield, Ph.D.
} } Biology Department, Temple University
} } 1900 North 12th Street
} } Philadelphia, PA 19122
} } jbs-at-temple.edu
} } (215) 204 8839, fax (215) 204 0486
} } http://astro.temple.edu/~jbs

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576


==============================Original Headers==============================
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From: mmgraham06-at-gmail.com
Date: Thu, 20 Jan 2011 10:42:15 -0600
Subject: [Microscopy] viaWWW: Research Assistant Position at Yale University

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Title-Subject: [Filtered] Re:Research Assistant Position

Message: Hi Listeners

There is a current opening for a EM technician at Yale University Medical
School.

If you are interested you can check the site at

http://www.yale.edu/hronline/stars/application/external/index.html
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Thanks

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From: John.Mardinly-at-wdc.com
Date: Thu, 20 Jan 2011 11:10:26 -0600
Subject: [Microscopy] Early microtomy--urban legend?

Contents Retrieved from Microscopy Listserver Archives
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I had a Topcon 002B at Intel for many years for which use of a hammer was
required. The ion pump would periodically grow whiskers that resulted in
markedly increased ion current. The best way to get rid of them was to bang
on the pump with a hammer. I don't mean a rubber mallet either. To be fully
effective, this required a big iron hammer and hearing protection, as well
as thick skin to withstand the curious stares and complaints about the noise
and questions about one's sanity from fellow workers.

John Mardinly

Western Digital

-----Original Message-----
X-from: paul_hazelton-at-umanitoba.ca [mailto:paul_hazelton-at-umanitoba.ca]
Sent: Thursday, January 20, 2011 7:44 AM
To: John Mardinly

Forgot how much fun these discussions of the "old days" can be. At
Washington University there was an old Seimens microscope. At the time
I was training as a tech, and using the microscope was not an option.
However, the man who trained me, Charles Kuhn, told me that one of the
microscopes he had used, and I believe he was referring to the old
Seimens at WU, had to be aligned using a rubber mallet. Never did it
personally, but was regaled with stories by one who did.

paul
--
Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: joelsheffield-at-gmail.com
Date: Thu, 20 Jan 2011 11:31:19 -0600
Subject: [Microscopy] Microtome History - was "Ernst Ruska"

Contents Retrieved from Microscopy Listserver Archives
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Indeed. We are in a building that was often broken into. Years ago,
I made it my business to collect the old door panes --they were a
tinted glass, about 1/4" thick, and had just the right temper to make
excellent knives.

Joel

On Thu, Jan 20, 2011 at 10:59 AM, {oshel1pe-at-cmich.edu} wrote:
}
}
}
} ----------------------------------------------------------------------------
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}
} I know at least 2 old microscopists who made
} glass knifes by breaking window glass - one of
} them here at CMU. He went to construction sites
} to get the broken windows.
}
} I'm running down the reference and (I hope) an
} image, but one of the early tries at
} ultramicrotomy was sticking razor blades on a
} centrifuge rotor, then mount the sections on the
} tub, close the lid and turn on the centrifuge.
} The sections where then picked up from inside the
} tub, having been flung willy-nilly around the
} inside.
} (The image is used in the microtomy lecture to
} convince the students thin sectioning could be a
} lot worse than they think it is.)
}
} Phil
}
} } Von: Muþ Wolfgang
} } Gesendet: Donnerstag, 20. J”nner 2011 11:46
} } An: 'joelsheffield-at-gmail.com'
} } Cc: 'microscopy-at-microscopy.com'
} } Betreff: Re: [Microscopy] Microtome History - was "Ernst Ruska"
} }
} }
} } Joel wrote:
} } } Now, the urban legend.Ý
} } I had heard that a group (unnamed) was having a
} } vigorous discussion about the best way to strop
} } a steel knife so as to get the best edge for
} } cutting thin sections.Ý How many strokes, in
} } which direction, which side of the blade, etc.Ý
} } During the discussion, a bottle of Coke was
} } knocked off the table and broke into many
} } pieces.Ý
} } The story goes that one, or another, of these
} } people took up one of the shards, and suggested
} } that it would make a good knife edge.
} } Verification anyone? {
} }
} } Joel
} }
} }
} } Good morning,
} } Dear Joel, dear all
} }
} } I can't tell or verify the above mentioned
} } "Coke-shard-story" but - indeed - I can add
} } information as to the "knocked off
} } table"-part....
} }
} } I had always heared (personal informations from
} } elder REICHERT-freaks and service people, from
} } lectures/lecturers in the 70ies and 80ies as
} } well as personally from H. Sitte himself) that
} } the group around H. SITTE at REICHERT (now
} } LEICA) in the late 1950ies/60ies was/were doing
} } such experiments with {glass plates} .... which
} } were thrown down to the floor... and one of them
} } (it was Sitte himself, as he told me) picked up
} } the shards evaluating the edges of "the most
} } promising one" for sectioning purposes (who of
} } that group had the "invention" to use glass as
} } a} crude { knife (element) I unfortunately don't
} } know.
} }
} } By the way, digging a little bit on this in
} } Google, I found one hint on a document in a
} } German data bank at
} } ==} http://finden.nationallizenzen.de/Author/Home?author=Sitte%2C%20H.Ý
} }
} } {Ein einfaches Ultramikrotom mit thermischem Vorschub} ver–ffentlicht
} } ("A simple ultramicrotome with thermal advance" published)
} } in: Naturwissenschaften , ISSN 1432-1904, Vol. 42 (12. 1955), p. 367-367
} }
} } Note:Ý {Naturwissenschaften} is the former title
} } ofÝÝÝÝÝ Biomedical and Life SciencesÝ (SPRINGER)
} } Another source:Ý http://www.freepatentsonline.com/3828641.html:
} } United States Patent US3828641:
} }
} } ==} Apparatus for adjusting the elevation of a
} } specimen in microtomes, particularly
} } ultramicrotomes
} } Inventor:Ý Hellmuth Sitte, HOMBURG (not Humburg
} } [as written in the patent document!]/Saar
} } Germany)
} } Assignee:Ý C.Reichert Optische Werke AG, Vienna, Austria)
} } Filed:Ý Nov. 10,1972
} }
} } Also see
} } http://books.google.at/books?id=JULNEc9rmUUC&pg=PA154&lpg=PA154&dq=Sitte+and+ultramicrotome&source=bl&ots=jTsBEi9KOU&sig=EbNY_Cfv_isjcFo8MhMpJfl5Jb8&hl=de&ei=aAs4Tf_AIp2ShAfA-tmMCg&sa=X&oi=book_result&ct=result&resnum=2&ved=0CCEQ6AEwAQ#v=onepage&q=Sitte%20and%20ultramicrotome&f=false
} } (From the book Michael J. Dykstra, Laura E.
} } Reuss - 2003Ý (see page "History: in the text
} } displayed
} } the Reichert OMU-1 (before 1964, perhaps see
} } document above in {Naturwissenschaften} 1955)
} } from Sitte described as having thermal advance,
} } Sitte was never happy with, since 1964: OMU-2
} } with thermal advance....
} }
} } This just for your pleasure....
} } (and I sure that searching for Sitte Hellmuth or
} } Sitte and microtome will find some results more
} } on that interesting and exciting "history" of
} } ultramicrotomy advances.....
} }
} } Best wishes and regards,
} } have a good and successful rest of the week and a beautiful weekend,
} }
} } Wolfgang MUSS (Ph.D.)
} } EM-Lab Gen.Hosp. SALK-LKH
} } SALZBURG
} } AUSTRIA
} }
} }
} }
} }
} }
} }
} }
} } }  -----Urspr¸ngliche Nachricht-----
} } }  Von: joelsheffield-at-gmail.com [mailto:joelsheffield-at-gmail.com]
} } }  Gesendet: Donnerstag, 20. J”nner 2011 06:51
} } }  An: Muþ Wolfgang
} } }  Betreff: [Microscopy] Microtome History - was "Ernst Ruska"
} } }
} } }  -----------------------------------------------------------------------
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} } }
} } }  It is certainly clear that there are many interesting stories --some
} } }  urban legends, and some insights into the minds of those that founded
} } }  the discipline of thin section electron microscopy.
} } }  During the mid '70's, I taught an EM course at Rutgers, Camden.
} } }  In the basement, along with an RCA EMU-2 (!) was a thermal advance
} } }  microtome that I was told was developed by Sjostrand.
} } }  This thing consisted of a disk-like plate, about 4-5 inches in
} } }  diameter, with an eccentrically mounted arm that stuck out of the
} } }  plate.Ý The arm had a chuck for a tissue sample, and a heating coil.
} } }  The plate itself was mounted in a frame and lubricated with oil --the
} } }  plate acted like a large oil bearing.Ý The plate was linked to a motor
} } }  on the wall by a long V belt (to minimize vibration), and the entire
} } }  plate rotated, bringing the block past the knife on each rotation.Ý The
} } }  sections that resulted tended to be arc shaped.Ý We got it working, but
} } }  it was a terrifying thing to see.Ý I wonder if anyone in this group
} } }  remembers this type of machine -- assuming that my description is
} } }  comprehensible.
} } }
} } }  The other microtome that I used, and really admire, was the Huxley
} } }  microtome, originally sold by Cambridge, and ultimately marketed by
} } }  LKB.Ý Although it used a mechanical advance, all of the movements of
} } }  the cutting arm were made by bending sheets of spring steel, so that
} } }  there were no surfaces that moved against each other.Ý Moreover, the
} } }  cutting stroke was controlled by an oil-filled damper, to minimize
} } }  chatter. -- a remarkable and stable machine.
} } }
} } }  Now, the urban legend.
} } }  I had heard that a group (unnamed) was having a vigorous discussion
} } }  about the best way to strop a steel knife so as to get the best edge
} } }  for cutting thin sections.Ý How many strokes, in which direction, which
} } }  side of the blade, etc.Ý During the discussion, a bottle of Coke was
} } }  knocked off the table and broke into many pieces.
} } }  The story goes that one, or another, of these people took up one of the
} } }  shards, and suggested that it would make a good knife edge.
} } }  Verification anyone?
} } }
} } }  Joel
} } }
} } }  --
} } }  Joel B. Sheffield, Ph.D.
} } }  Biology Department, Temple University
} } }  1900 North 12th Street
} } }  Philadelphia, PA 19122
} } }  jbs-at-temple.edu
} } }  (215) 204 8839, fax (215) 204 0486
} } }  http://astro.temple.edu/~jbs
}
} --
} Philip Oshel
} Microscopy Facility Supervisor
} Biology Department
} 024C Brooks Hall
} Central Michigan University
} Mt. Pleasant, MI 48859
} (989) 774-3576
}
}
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--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
jbs-at-temple.edu
(215) 204 8839, fax (215) 204 0486
http://astro.temple.edu/~jbs


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From: ehaller-at-health.usf.edu
Date: Thu, 20 Jan 2011 11:43:13 -0600
Subject: [Microscopy] Early microtomy--urban legend?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I can confirm the rubber mallet story for column alignment. I worked at Mellon Institute in Pittsburgh in the '70's. So did my father, Martin Haller, who taught me electron Microscopy. He worked there from the '60's to the '70's. We had several RCA electron microscopes that were purchased many years before I was trained in microscopy. My father used to align the lenses in the column of these microscopes with a rubber mallet. I took a couple of photos on these microscopes back in 1974. They shot glass plates with 3 exposures. After the 3 shots, you had to break vacuum, take out your plate, replace it and repump the scope to be able to take any more photos.

Ed

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: PhillipsT-at-missouri.edu [PhillipsT-at-missouri.edu]
Sent: Thursday, January 20, 2011 10:06 AM
To: Haller, Edward

I have heard all the microtome and glass knives stories also but have no evidence to their veracity. But I once was talking to Sanford Palay - an early pioneer in EM - and he told me how they used a rubber hammer to tap the outside of the TEM column to try and nudge the aperture into place. I can't imagine how tedious that must have been. Of course, the reward the pioneers all got from primitive microtomy and TEMs was that they got to discover amazing new things of a bigger magnitude than most of the incremental advances we all get to contribute to these days. But I think I would rather have done science then rather than now when high cost forces specialization and a greater proportion of time is devoted to finding funding rather than organelles. Tom

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: lovett-at-tcnj.edu [mailto:lovett-at-tcnj.edu]
Sent: Thursday, January 20, 2011 8:20 AM
To: Phillips, Thomas E.

Fellow microscopists:

I was taught decades ago that early ultrathin sections were made in the
following manner:

A sheet of plate glass was dropped on the floor. The shard with the
best edge was selected and attached to the blade of a small window fan.
The resin-embedded specimen was attached to the tip of a soldering
iron. once everything was clamped and aligned, the fan was turned on,
the soldering iron was plugged in, and the section were collected in a
large pan of water held beneath the fan. (As the soldering iron heated,
the thermal expansion advanced the specimen into the glass blade.)
Sections of optimal thickness were selected from those floating in the
pan on the basis of the color refracted.

I love the story. Does anyone know whether this even approaches a true
story?

Thanks,

Don

P.S. Anyone still alive who has first-hand knowledge of this story
would be pretty old by now, but I thought that I would give this a shot.

--

Donald L. Lovett e-mail: lovett-at-tcnj.edu
Professor and Chairperson phone: 609-771-2876
Department of Biology fax: 609-637-5118
The College of New Jersey
P.O. Box 7718
Ewing, NJ 08628-0718


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From: stefan.diller-at-t-online.de
Date: Thu, 20 Jan 2011 11:57:20 -0600
Subject: [Microscopy] viaWWW: SEM imaging of wax

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,
I had the same problem visualizing bee wax structures and not owning an ESEM ;-)

Solution: I put the structure on a large specimen mount, putting 2 bands of conductive adhesive tape left and right on top and put
it in my normal Pt-sputtercoater.
Concerning the heat during sputtering, I took off the sputter-head and added a second glass vessel (I took it from my
carbon-coater) on top of the first.
Did ca. 10-15 sputtering-runs with minimal current (10mA) and finally put it in the scope at 5-6kV.

See images at
http://www.electronmicroscopy.info/wax

It`s a bit of a crude solution but it works.
Concerning the thickness of your wax layers you may also try the same thing with an high-vac chromecoater...


Best wishes,
Stefan

-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 20.01.11 16:00, schrieb nizets2-at-yahoo.com:
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} Just a question disguised in an answer: wouldn't it be the right application to
} make a replica?
}
} Stephane
}
}
} ----- Original Message ----
} X-from: "anthonyribaudo3-at-gmail.com" {anthonyribaudo3-at-gmail.com}
} To: nizets2-at-yahoo.com
} Sent: Wed, January 19, 2011 9:39:49 PM
} Subject: [Microscopy] viaWWW: SEM imaging of wax
}
}
}
}
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} Email: anthonyribaudo3-at-gmail.com
} Name: Anthony Ribaudo
}
} Organization: TRI Princeton
}
} Title-Subject: [Filtered] SEM imaging of wax
}
} Message: Can anyone suggest guidelines for imaging a paraffin wax
} coating on a metal or polymeric substrate via FESEM. The plan is to
} detect the wax layer that is thought to be several hundred nanometers
} thick? Are there any waxes that would be more stable to image under
} the electron beam than paraffin wax?
}
} Anthony Ribaudo
} TRI Princeton
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From: William.F.Tivol-at-aero.org
Date: 01/19/2011 12:51 PM
Subject: [Microscopy] viaWWW: TEM diffraction 3nm precipitates

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Dear Zhou,
If possible, I would put in a very small SA aperture and try to
use a parallel beam to get Bragg spots. These precipitates are very
small, so you may need to take long exposures, which means that the
specimen and aperture positions must be very stable. In order to see
diffraction from the small particles, the diffraction from the much larger
surrounding area must be minimized (or subtracted out).
Yours,
Bill



X-from: z.zhou-at-lboro.ac.uk
To: William.F.Tivol-at-aero.org



Organization: Dept of Materials, Loughborough University, UK

Title-Subject: [Filtered] TEM diffraction 3nm precipitates

Message: Greetings listers,

Iím studying crystal structure of some
carbides/nitrides precipitates in steel. The
precipitates are 2-5nm size in a C replica TEM
specimen, V-, Cr-, and Nb-rich by STEM/EDX.

How can I get electron diffraction or crystal
structure information of these fine precipitates?

I tried on a TecnaiF20 TEM using nanoprobe spot
7, focused on a small particle, then diffraction,
most of the time I got amorphous rings of C
support, no obvious diffraction discs. STEM mode
did indicate some C contamination on the session.
Assuming minimal C contamination, is it possible
that this method can give me some sort of
convergence beam electron diffraction pattern,
which may help me determine the crystal structure
of the precipitates?

Iím also open to other methods.

Your advice is highly appreciated.

Zhou



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From: William.F.Tivol-at-aero.org
Date: 01/19/2011 05:45 AM
Subject: [Microscopy] EDS line scans and time on my hands

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Dear Frank,
The key is that you're "looking for slight changes in element
concentrations at grain boundaries and precipitates." In order best to
see these changes, the pixel size should be smaller than the
features--half the feature size guarantees that at least one pixel will be
entirely within the feature. If the pixel size is too large than you will
measure the average element concentrations over both the feature and the
surrounding area, which will make the apparent changes smaller than they
really are. I would suggest taking an image to locate the features, then
place the beam on each feature in turn to do the analysis. Also take a
spectrum of the area next to each feature. This should give you the best
chance of seeing differences and minimize the amount of data.
Yours,
Bill



X-from: Frank_Karl-at-lincolnelectric.com
To: William.F.Tivol-at-aero.org






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Iâ??ve been thinking about EDS line scans and Iâ??m attempting to maximize
the
data I collect.

I run at 20 KV on iron samples so my electron interaction range is between
1.5 to 2.3um (Berthe or K-O range calculations). According to data
provided by EDAX at 1024 horizontal pixels each pixel is around 0.8 um at
700x. So right away I see if each image pixel represents a data point,
Iâ??m
sampling about 2 pixel volumes per data point. Looking for a sudden and
sharp change in element concentration seem difficult, but wait thereâ??s
more. Let us introduce another plot complication.

My customers donâ??t want to scan the entire image, tooo much dataâ?¦

So I scan a smaller section of image described above and instruct the
computer to take 512 data points along a line that might only be 400
(visual estimate from screen) image pixels long.

Soâ?¦ Should I reduce the image resolution so that each image pixel will
be
one data point and scan the entire image? Would it be better to lower the
magnification so the image pixels are larger (say 1.2um ). I could go to
100x and 512 horizontal image pixel so each image pixel is 2.3um?

Iâ??m looking for slight changes in element concentration at grain
boundaries
and precipitates and of course I want to produce the most meaningful data
possible. Iâ??m running at conditions that suggest my electron
interactive
volume is larger than my spatial resolution as to produce â??continuousâ?
data.

Or am I just over thinking the process?

Any suggestion or comments would be welcome

Frank
Lincoln Electric Company
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From: John.Mardinly-at-wdc.com
Date: Thu, 20 Jan 2011 12:33:11 -0600
Subject: [Microscopy] Re: Microtome History - was "Ernst Ruska"

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This sounds more like a food processor than a microtome!

John Mardinly

Western Digital


-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Thursday, January 20, 2011 8:30 AM
To: John Mardinly

I just remembered seeing a print ad from some science journal published the
40's or 50's (before my time!) for an early ultramicrotome. It was a high
speed motor spinning some type of blade. The concept was that the block was
advanced into this buzzsaw and you were supposed to catch the sections
flying off. At the time I think the view was that ultrathins could only be
cut at high speed. The real kicker was the ad mentioned the motor was also
suitable for use in centrifuges. Crazy. Tom


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: oshel1pe-at-cmich.edu [mailto:oshel1pe-at-cmich.edu]
Sent: Thursday, January 20, 2011 9:54 AM
To: Phillips, Thomas E.

I know at least 2 old microscopists who made
glass knifes by breaking window glass - one of
them here at CMU. He went to construction sites
to get the broken windows.

I'm running down the reference and (I hope) an
image, but one of the early tries at
ultramicrotomy was sticking razor blades on a
centrifuge rotor, then mount the sections on the
tub, close the lid and turn on the centrifuge.
The sections where then picked up from inside the
tub, having been flung willy-nilly around the
inside.
(The image is used in the microtomy lecture to
convince the students thin sectioning could be a
lot worse than they think it is.)

Phil

} Von: Mu Wolfgang
} Gesendet: Donnerstag, 20. J"nner 2011 11:46
} An: 'joelsheffield-at-gmail.com'
} Cc: 'microscopy-at-microscopy.com'
} Betreff: Re: [Microscopy] Microtome History - was "Ernst Ruska"
}
}
} Joel wrote:
} } Now, the urban legend.
} I had heard that a group (unnamed) was having a
} vigorous discussion about the best way to strop
} a steel knife so as to get the best edge for
} cutting thin sections. How many strokes, in
} which direction, which side of the blade, etc.
} During the discussion, a bottle of Coke was
} knocked off the table and broke into many
} pieces.
} The story goes that one, or another, of these
} people took up one of the shards, and suggested
} that it would make a good knife edge.
} Verification anyone? {
}
} Joel
}
}
} Good morning,
} Dear Joel, dear all
}
} I can't tell or verify the above mentioned
} "Coke-shard-story" but - indeed - I can add
} information as to the "knocked off
} table"-part....
}
} I had always heared (personal informations from
} elder REICHERT-freaks and service people, from
} lectures/lecturers in the 70ies and 80ies as
} well as personally from H. Sitte himself) that
} the group around H. SITTE at REICHERT (now
} LEICA) in the late 1950ies/60ies was/were doing
} such experiments with {glass plates} .... which
} were thrown down to the floor... and one of them
} (it was Sitte himself, as he told me) picked up
} the shards evaluating the edges of "the most
} promising one" for sectioning purposes (who of
} that group had the "invention" to use glass as
} a} crude { knife (element) I unfortunately don't
} know.
}
} By the way, digging a little bit on this in
} Google, I found one hint on a document in a
} German data bank at
} ==} http://finden.nationallizenzen.de/Author/Home?author=Sitte%2C%20H.
}
} {Ein einfaches Ultramikrotom mit thermischem Vorschub} ver-ffentlicht
} ("A simple ultramicrotome with thermal advance" published)
} in: Naturwissenschaften , ISSN 1432-1904, Vol. 42 (12. 1955), p. 367-367
}
} Note: {Naturwissenschaften} is the former title
} of Biomedical and Life Sciences (SPRINGER)
} Another source: http://www.freepatentsonline.com/3828641.html:
} United States Patent US3828641:
}
} ==} Apparatus for adjusting the elevation of a
} specimen in microtomes, particularly
} ultramicrotomes
} Inventor: Hellmuth Sitte, HOMBURG (not Humburg
} [as written in the patent document!]/Saar
} Germany)
} Assignee: C.Reichert Optische Werke AG, Vienna, Austria)
} Filed: Nov. 10,1972
}
} Also see
} http://books.google.at/books?id=JULNEc9rmUUC&pg=PA154&lpg=PA154&dq=Sitte+an
d+ultramicrotome&source=bl&ots=jTsBEi9KOU&sig=EbNY_Cfv_isjcFo8MhMpJfl5Jb8&hl
=de&ei=aAs4Tf_AIp2ShAfA-tmMCg&sa=X&oi=book_result&ct=result&resnum=2&ved=0CC
EQ6AEwAQ#v=onepage&q=Sitte%20and%20ultramicrotome&f=false
} (From the book Michael J. Dykstra, Laura E.
} Reuss - 2003 (see page "History: in the text
} displayed
} the Reichert OMU-1 (before 1964, perhaps see
} document above in {Naturwissenschaften} 1955)
} from Sitte described as having thermal advance,
} Sitte was never happy with, since 1964: OMU-2
} with thermal advance....
}
} This just for your pleasure....
} (and I sure that searching for Sitte Hellmuth or
} Sitte and microtome will find some results more
} on that interesting and exciting "history" of
} ultramicrotomy advances.....
}
} Best wishes and regards,
} have a good and successful rest of the week and a beautiful weekend,
}
} Wolfgang MUSS (Ph.D.)
} EM-Lab Gen.Hosp. SALK-LKH
} SALZBURG
} AUSTRIA
}
}
}
}
}
}
}
} } -----Ursprngliche Nachricht-----
} } Von: joelsheffield-at-gmail.com [mailto:joelsheffield-at-gmail.com]
} } Gesendet: Donnerstag, 20. J"nner 2011 06:51
} } An: Mu Wolfgang
} } Betreff: [Microscopy] Microtome History - was "Ernst Ruska"
} }
} } -----------------------------------------------------------------------
} } -----
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} } America
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} } http://www.microscopy.com/MicroscopyListserver
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} } -----------------------------------------------------------------------
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} }
} } It is certainly clear that there are many interesting stories --some
} } urban legends, and some insights into the minds of those that founded
} } the discipline of thin section electron microscopy.
} } During the mid '70's, I taught an EM course at Rutgers, Camden.
} } In the basement, along with an RCA EMU-2 (!) was a thermal advance
} } microtome that I was told was developed by Sjostrand.
} } This thing consisted of a disk-like plate, about 4-5 inches in
} } diameter, with an eccentrically mounted arm that stuck out of the
} } plate. The arm had a chuck for a tissue sample, and a heating coil.
} } The plate itself was mounted in a frame and lubricated with oil --the
} } plate acted like a large oil bearing. The plate was linked to a motor
} } on the wall by a long V belt (to minimize vibration), and the entire
} } plate rotated, bringing the block past the knife on each rotation. The
} } sections that resulted tended to be arc shaped. We got it working, but
} } it was a terrifying thing to see. I wonder if anyone in this group
} } remembers this type of machine -- assuming that my description is
} } comprehensible.
} }
} } The other microtome that I used, and really admire, was the Huxley
} } microtome, originally sold by Cambridge, and ultimately marketed by
} } LKB. Although it used a mechanical advance, all of the movements of
} } the cutting arm were made by bending sheets of spring steel, so that
} } there were no surfaces that moved against each other. Moreover, the
} } cutting stroke was controlled by an oil-filled damper, to minimize
} } chatter. -- a remarkable and stable machine.
} }
} } Now, the urban legend.
} } I had heard that a group (unnamed) was having a vigorous discussion
} } about the best way to strop a steel knife so as to get the best edge
} } for cutting thin sections. How many strokes, in which direction, which
} } side of the blade, etc. During the discussion, a bottle of Coke was
} } knocked off the table and broke into many pieces.
} } The story goes that one, or another, of these people took up one of the
} } shards, and suggested that it would make a good knife edge.
} } Verification anyone?
} }
} } Joel
} }
} } --
} } Joel B. Sheffield, Ph.D.
} } Biology Department, Temple University
} } 1900 North 12th Street
} } Philadelphia, PA 19122
} } jbs-at-temple.edu
} } (215) 204 8839, fax (215) 204 0486
} } http://astro.temple.edu/~jbs

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576


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From: tina-at-pbrc.hawaii.edu
Date: Thu, 20 Jan 2011 12:34:03 -0600
Subject: [Microscopy] Re: Early microtomy--urban legend?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, All-

One of the hospitals here in Honolulu had an old RCA TEM that had a rubber
mallet in the alignment kit. They kept that old scope going until the
early 1980s, I believe, with frequent visits from an aged service
technician. It was a mechanical wonder.

I also heard of many of the early iterations of ultramicrotome, possibly
at the knee of Caroline Schooley, from whom I learned TEM in 1976. One
version I heard was mounting a block on the blade of a fan and running it
past a stationary knife at high speed, using the position of venetian
blinds on a sunny day as thickness control. One had to search around the
room for the sections. I had to make knives from plate glass for a couple
of years, and I might as well have given up on the pliers and just thrown
the glass on the floor...

Aloha,
Tina

Twenty to thirty foot waves predicted on the North Shore today.

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: swatkins-at-pitt.edu
Date: Thu, 20 Jan 2011 13:01:00 -0600
Subject: [Microscopy] Microtome History - was "Ernst Ruska"

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

If you check out the Glauert texts, in the volume by norma Reid and julian Beesley (pub 1991), they talk about the old high speed microtomes apparently razor blades were rotated at 10k rpm (the refs are Obrien et al 1943, and Fullam et al 1946, the Obrien paper was actually in Science vol 98, 455-456). For fun I made a similar device out of a dremel and a plastic salad bowl, the dremel cut the sections which flew off and stuck to the inner surface of the plastic bowl. I then filled it with water and the sections (at least some of them) floated off. The thickness was completely random, and the bowl size a bit enormous and not stationary.. think collecting sections from the surface of the Atlantic... but they were useable.. sort of... Obviously no serial sections. The other thing is that I was using contemporary resin technology, not available 65 years ago when this work was done, but I guess at the "cutting edge" (pun intended)
S

Simon C. Watkins Ph.D, FRC Path
Professor and Vice Chair Cell Biology and Physiology
Professor Immunology Director Center for Biologic Imaging
BSTS 225
University of Pittsburgh
3500 Terrace St
Pittsburgh PA 15261
412-352-2277
www.cbi.pitt.edu


-----Original Message-----
X-from: joelsheffield-at-gmail.com [mailto:joelsheffield-at-gmail.com]
Sent: Thursday, January 20, 2011 12:37 PM
To: Watkins, Simon C

Indeed. We are in a building that was often broken into. Years ago,
I made it my business to collect the old door panes --they were a
tinted glass, about 1/4" thick, and had just the right temper to make
excellent knives.

Joel

On Thu, Jan 20, 2011 at 10:59 AM, {oshel1pe-at-cmich.edu} wrote:
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
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} ----------------------------------------------------------------------------
}
} I know at least 2 old microscopists who made
} glass knifes by breaking window glass - one of
} them here at CMU. He went to construction sites
} to get the broken windows.
}
} I'm running down the reference and (I hope) an
} image, but one of the early tries at
} ultramicrotomy was sticking razor blades on a
} centrifuge rotor, then mount the sections on the
} tub, close the lid and turn on the centrifuge.
} The sections where then picked up from inside the
} tub, having been flung willy-nilly around the
} inside.
} (The image is used in the microtomy lecture to
} convince the students thin sectioning could be a
} lot worse than they think it is.)
}
} Phil
}
} } Von: Muþ Wolfgang
} } Gesendet: Donnerstag, 20. J"nner 2011 11:46
} } An: 'joelsheffield-at-gmail.com'
} } Cc: 'microscopy-at-microscopy.com'
} } Betreff: Re: [Microscopy] Microtome History - was "Ernst Ruska"
} }
} }
} } Joel wrote:
} } } Now, the urban legend.Ý
} } I had heard that a group (unnamed) was having a
} } vigorous discussion about the best way to strop
} } a steel knife so as to get the best edge for
} } cutting thin sections.Ý How many strokes, in
} } which direction, which side of the blade, etc.Ý
} } During the discussion, a bottle of Coke was
} } knocked off the table and broke into many
} } pieces.Ý
} } The story goes that one, or another, of these
} } people took up one of the shards, and suggested
} } that it would make a good knife edge.
} } Verification anyone? {
} }
} } Joel
} }
} }
} } Good morning,
} } Dear Joel, dear all
} }
} } I can't tell or verify the above mentioned
} } "Coke-shard-story" but - indeed - I can add
} } information as to the "knocked off
} } table"-part....
} }
} } I had always heared (personal informations from
} } elder REICHERT-freaks and service people, from
} } lectures/lecturers in the 70ies and 80ies as
} } well as personally from H. Sitte himself) that
} } the group around H. SITTE at REICHERT (now
} } LEICA) in the late 1950ies/60ies was/were doing
} } such experiments with {glass plates} .... which
} } were thrown down to the floor... and one of them
} } (it was Sitte himself, as he told me) picked up
} } the shards evaluating the edges of "the most
} } promising one" for sectioning purposes (who of
} } that group had the "invention" to use glass as
} } a} crude { knife (element) I unfortunately don't
} } know.
} }
} } By the way, digging a little bit on this in
} } Google, I found one hint on a document in a
} } German data bank at
} } ==} http://finden.nationallizenzen.de/Author/Home?author=Sitte%2C%20H.Ý
} }
} } {Ein einfaches Ultramikrotom mit thermischem Vorschub} ver-ffentlicht
} } ("A simple ultramicrotome with thermal advance" published)
} } in: Naturwissenschaften , ISSN 1432-1904, Vol. 42 (12. 1955), p. 367-367
} }
} } Note:Ý {Naturwissenschaften} is the former title
} } ofÝÝÝÝÝ Biomedical and Life SciencesÝ (SPRINGER)
} } Another source:Ý http://www.freepatentsonline.com/3828641.html:
} } United States Patent US3828641:
} }
} } ==} Apparatus for adjusting the elevation of a
} } specimen in microtomes, particularly
} } ultramicrotomes
} } Inventor:Ý Hellmuth Sitte, HOMBURG (not Humburg
} } [as written in the patent document!]/Saar
} } Germany)
} } Assignee:Ý C.Reichert Optische Werke AG, Vienna, Austria)
} } Filed:Ý Nov. 10,1972
} }
} } Also see
} } http://books.google.at/books?id=JULNEc9rmUUC&pg=PA154&lpg=PA154&dq=Sitte+and+ultramicrotome&source=bl&ots=jTsBEi9KOU&sig=EbNY_Cfv_isjcFo8MhMpJfl5Jb8&hl=de&ei=aAs4Tf_AIp2ShAfA-tmMCg&sa=X&oi=book_result&ct=result&resnum=2&ved=0CCEQ6AEwAQ#v=onepage&q=Sitte%20and%20ultramicrotome&f=false
} } (From the book Michael J. Dykstra, Laura E.
} } Reuss - 2003Ý (see page "History: in the text
} } displayed
} } the Reichert OMU-1 (before 1964, perhaps see
} } document above in {Naturwissenschaften} 1955)
} } from Sitte described as having thermal advance,
} } Sitte was never happy with, since 1964: OMU-2
} } with thermal advance....
} }
} } This just for your pleasure....
} } (and I sure that searching for Sitte Hellmuth or
} } Sitte and microtome will find some results more
} } on that interesting and exciting "history" of
} } ultramicrotomy advances.....
} }
} } Best wishes and regards,
} } have a good and successful rest of the week and a beautiful weekend,
} }
} } Wolfgang MUSS (Ph.D.)
} } EM-Lab Gen.Hosp. SALK-LKH
} } SALZBURG
} } AUSTRIA
} }
} }
} }
} }
} }
} }
} }
} } } -----Urspr¸ngliche Nachricht-----
} } } Von: joelsheffield-at-gmail.com [mailto:joelsheffield-at-gmail.com]
} } } Gesendet: Donnerstag, 20. J"nner 2011 06:51
} } } An: Muþ Wolfgang
} } } Betreff: [Microscopy] Microtome History - was "Ernst Ruska"
} } }
} } } -----------------------------------------------------------------------
} } } -----
} } } The Microscopy ListServer -- CoSponsor:Ý The Microscopy Society of
} } } America
} } } ToÝ Subscribe/Unsubscribe --
} } } http://www.microscopy.com/MicroscopyListserver
} } } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } } -----------------------------------------------------------------------
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} } }
} } } It is certainly clear that there are many interesting stories --some
} } } urban legends, and some insights into the minds of those that founded
} } } the discipline of thin section electron microscopy.
} } } During the mid '70's, I taught an EM course at Rutgers, Camden.
} } } In the basement, along with an RCA EMU-2 (!) was a thermal advance
} } } microtome that I was told was developed by Sjostrand.
} } } This thing consisted of a disk-like plate, about 4-5 inches in
} } } diameter, with an eccentrically mounted arm that stuck out of the
} } } plate.Ý The arm had a chuck for a tissue sample, and a heating coil.
} } } The plate itself was mounted in a frame and lubricated with oil --the
} } } plate acted like a large oil bearing.Ý The plate was linked to a motor
} } } on the wall by a long V belt (to minimize vibration), and the entire
} } } plate rotated, bringing the block past the knife on each rotation.Ý The
} } } sections that resulted tended to be arc shaped.Ý We got it working, but
} } } it was a terrifying thing to see.Ý I wonder if anyone in this group
} } } remembers this type of machine -- assuming that my description is
} } } comprehensible.
} } }
} } } The other microtome that I used, and really admire, was the Huxley
} } } microtome, originally sold by Cambridge, and ultimately marketed by
} } } LKB.Ý Although it used a mechanical advance, all of the movements of
} } } the cutting arm were made by bending sheets of spring steel, so that
} } } there were no surfaces that moved against each other.Ý Moreover, the
} } } cutting stroke was controlled by an oil-filled damper, to minimize
} } } chatter. -- a remarkable and stable machine.
} } }
} } } Now, the urban legend.
} } } I had heard that a group (unnamed) was having a vigorous discussion
} } } about the best way to strop a steel knife so as to get the best edge
} } } for cutting thin sections.Ý How many strokes, in which direction, which
} } } side of the blade, etc.Ý During the discussion, a bottle of Coke was
} } } knocked off the table and broke into many pieces.
} } } The story goes that one, or another, of these people took up one of the
} } } shards, and suggested that it would make a good knife edge.
} } } Verification anyone?
} } }
} } } Joel
} } }
} } } --
} } } Joel B. Sheffield, Ph.D.
} } } Biology Department, Temple University
} } } 1900 North 12th Street
} } } Philadelphia, PA 19122
} } } jbs-at-temple.edu
} } } (215) 204 8839, fax (215) 204 0486
} } } http://astro.temple.edu/~jbs
}
} --
} Philip Oshel
} Microscopy Facility Supervisor
} Biology Department
} 024C Brooks Hall
} Central Michigan University
} Mt. Pleasant, MI 48859
} (989) 774-3576
}
}
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--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
jbs-at-temple.edu
(215) 204 8839, fax (215) 204 0486
http://astro.temple.edu/~jbs


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From: schooley-at-mcn.org
Date: Thu, 20 Jan 2011 13:05:12 -0600
Subject: [Microscopy] Re: Early microtomy--urban legend?

Contents Retrieved from Microscopy Listserver Archives
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} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America

This whole discussion has been a "this is my life" for me. Sorry,
Tina - the fan thing wasn't mine. I went to work for Dorothy Pitelka
at U.C. Berkeley in '53, and our first attempts at thin sections were
with a metal-knife Spencer microtome with a modifying wedge in the
advance mechanism. Miserable. Then a MT-1 with glass knives; a
local window company made 1" strips from old windows for us.

The rubber mallet was used on RCA EMU-2 scopes to align the objective
aperture....

Caroline
--
Caroline Schooley
Project MICRO Coordinator
Microscopy Society of America
45301 Caspar Point Road, Box 117
Caspar, CA 95420
Phone/FAX (707)964-9460
Project MICRO: http://www.microscopy.org/ProjectMICRO

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From: bigelow-at-umich.edu
Date: Thu, 20 Jan 2011 13:42:35 -0600
Subject: [Microscopy] RE:Early Micro

Contents Retrieved from Microscopy Listserver Archives
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Paul Hazelton's comments about knowing someone who claimed to have
used a rubber mallet to align a Siemens microscope, reminds me of my
own experience along that line. I took mu first electron
micrographs on an RCA EMB microscope in Robley Williams lab in the
Physics Department here at the University of Michigan. This was only
the second EM manufactured and sold by RCA. Robley had two of these
instruments, one which he reserved for his own use and one that he
allowed other 'qualified' persons to use. It was said that he
selected the best pole pieces and power supplies from the two
instruments and incorporated them to his own, and so he had one of
the best electron microscopes in the country at the time. I was
deemed a qualified user because I was studying under Professor L. O.
Brockway who was internationally famous for his work on determining
the structures of organic molecules by electron diffraction. Robley
was, of course, probably best known for developing the method of
shadow casting that was extensively used to enhance contrast in
micrographs of particulate materials and surface replicas. At that
time the tobacco mosaic virus, which have a beautiful long rod-like
structure, was a favorite specimen to use to demonstrate the
resolution of an EM. I remember a lecture on the merits of shadow
casting where Robley showed a micrograph of beautifully shadowed
long rod-like particles that everyone naturally assumed were tobacco
mosaic virus; then Robley showed a second picture at higher
magnification in which the particles could be clearly seen to be
Lucky Strike cigarettes.

Anyway, halfway through the days of my graduate study Robley left the
U of M, and his microscope was no longer available. To continue our
work Professor Brockway managed to arrange for me to us an RCA EM2
electron microscope in the laboratory of Professor Thomas Francis in
the School of Public Health (Prof Francis was famous for heading up
the studies that confirmed the effectiveness of the Salk polio
vaccine.) This instrument was a considerable improvement over the
EMB; however, here is where the hammer-for-alignment feature came in.
The condenser aperture on this model instrument did not have external
controls for centering the condenser aperture, The aperture was
merely a circular platinum disk with a small hole in the middle that
was mounted in a cavity in the top of the condenser pole piece, and
held in place with a retaining screw. Initially, the aperture had to
be centered by trial and error, which involved disassembling the top
of the column, removing the pole piece from the condenser lens,
moving the aperture a bit, and then reassembling the instrument. To
get a really good alignment of the aperture usually required several
cycles of this routine combined with considerable luck. It was thus
very tempting to work with dirty condenser apertures. FINALLY,
however, someone (and I don't know that I ever heard who the sainted
individual was) discovered that if the retaining screw was not
tightened securely, so that the aperture could move around a bit, the
aperture could be centered by tapping gently on the outside of the
column. I don't recall ever using a rubber mallet, but the end of the
handle of a screw driver did the job very well.
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: bigelow-at-umich.edu
Date: Thu, 20 Jan 2011 14:05:08 -0600
Subject: [Microscopy] Hammering ion pumps

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dr. Mardinly's comments about using a hammer to dislodge whiskers
inside an ion pump leads me to point out that if the whiskers are
not too firmly established it is often possible to get rid of them by
turning the high voltage supply on for a few seconds three or four
times with the pressure in the pump above 1 Pa (10-2 Torr), If this
approach works it is gentler, and quieter, than the hammer method.
Incidentally, this method (but not the hammer method) and other
characteristics of ion pumps, are described on page 295 of my book,
'Vacuum Methods in Electron Microscopy'.

Good luck!
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: wesaia-at-iastate.edu
Date: 01/19/2011 05:45 AM
Subject: [Microscopy] EDS line scans and time on my hands

Contents Retrieved from Microscopy Listserver Archives
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Frank, it is good to see someone putting some thought into the process. I have had numerous students/clients come to me and ask for an analysis with some particular parameters only for me to ask if they really wanted to invest that much time and money. (Maybe I shouldn't have asked. I could have just given them the bill telling them that I only did what they asked. Naahh.)

Your interaction volume estimate seems reasonable, but you may need to look into cutting your voltage to cut down the volume. I would think 15 kV or even 12 kV would still get you a good response for most K-lines and would really cut down the volume.

Like Bill said, you want to match the volume to the feature size. That is the bottom line.

You probably also want to match the pixel size to the volume, but there is something to be said for oversampling. Even though the volume will be broader than your pixel, a lot of the interaction helps as the core. Yes, you will get stray signals from the surrounding area. You won't be able to say that the volume does not contain this element or that, but you will stand a better chance at finding what is elevated at that location as opposed to stepping over a feature and missing it.

Now as to your specific numbers, let me examine them.

You say that your pixel size is 0.8 um and there are 1024 across the image, so your field of view is roughly 800 um. I generally calculate magnification against a standard width of 120 mm (the width of a Polaroid print). That gives me a magnification of 150x. Now, I suppose if your image was displayed 560 mm wide on a 22-inch wide screen, it would be accurate to state it was at 700x magnification. Otherwise, there may be something wrong in your setup. It would be worth checking. However, your calculations of 2.3 um pixels with 512 of them across a 100x image does make mathematical sense.

(BTW, I am an old fogey in wanting to reference everything to a 5-inch Polaroid print. It doesn't matter if it's a thumbnail of an image on the web or in a journal or if it's plastered across a billboard. I tend to count all pictures as 5 inches wide in my mind's eye. Therefore, I have my SEM setup to calculate that way.)

I would probably setup for about 0.5 to 1.0 um steps across the boundaries. I would cut that even finer at lower voltages. (Indeed, I have such a sample in my queue.) I don't normally setup my pixels as my step sizes. They don't have to match unless you are collecting a spectral image or an x-ray map. Then I would want to match my pixel to my interaction volume or a bit smaller to make sure I have sampled everything well when in hunting mode.

Spectral images or x-ray maps do take considerably more time to collect. In that sense, I am with Bill to recommend that you chose your points wisely. You could probably collect good data much faster. I am not against elemental maps. Sometimes they are the best way to make a point, but they usually require pretty marked changes in concentration to perceive a change in intensity. For general work, I restrict myself to manually placed points or to a small raster of points in a specific region of interest.

Not knowing how your precipitates (might) occur, I can't give you a particular recommendation. I would be imaging as well as I could, probably in BSE mode, looking for visible signs of the particles and then using EDS to identify and quantify the material.

Best wishes,
Warren S.

-----Original Message-----
X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org]
Sent: Thursday, January 20, 2011 12:31 PM

Dear Frank,
The key is that you're "looking for slight changes in element concentrations at grain boundaries and precipitates." In order best to see these changes, the pixel size should be smaller than the features--half the feature size guarantees that at least one pixel will be entirely within the feature. If the pixel size is too large than you will measure the average element concentrations over both the feature and the surrounding area, which will make the apparent changes smaller than they really are. I would suggest taking an image to locate the features, then place the beam on each feature in turn to do the analysis. Also take a spectrum of the area next to each feature. This should give you the best chance of seeing differences and minimize the amount of data.
Yours,
Bill
from: Frank_Karl-at-lincolnelectric.com

I've been thinking about EDS line scans and I'm attempting to maximize
The data I collect.

I run at 20 KV on iron samples so my electron interaction range is between
1.5 to 2.3um (Berthe or K-O range calculations). According to data
provided by EDAX at 1024 horizontal pixels each pixel is around 0.8 um at
700x. So right away I see if each image pixel represents a data point, I'm
sampling about 2 pixel volumes per data point. Looking for a sudden and
sharp change in element concentration seem difficult, but wait there's
more. Let us introduce another plot complication.

My customers don't want to scan the entire image, tooo much data!

So I scan a smaller section of image described above and instruct the
computer to take 512 data points along a line that might only be 400
(visual estimate from screen) image pixels long.

So... Should I reduce the image resolution so that each image pixel will be
one data point and scan the entire image? Would it be better to lower the
magnification so the image pixels are larger (say 1.2um ). I could go to
100x and 512 horizontal image pixel so each image pixel is 2.3um?

I'm looking for slight changes in element concentration at grain boundaries
and precipitates and of course I want to produce the most meaningful data
possible. I'm running at conditions that suggest my electron interactive
volume is larger than my spatial resolution as to produce "continuous"
data.

Or am I just over thinking the process?

Any suggestion or comments would be welcome

Frank
Lincoln Electric Company
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From: microwink-at-gmail.com
Date: Thu, 20 Jan 2011 22:56:07 -0600
Subject: [Microscopy] Re: viaWWW: TEM diffraction 3nm precipitates

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Hello Dr. Zhou,

Our research group has also struggled with the challenge of obtaining
quality diffraction patterns from fine precipitates. The problem is
magnified (no pun intended) when the precipitates are very small, less
than 5nm in diameter, or when there is a high concentration of
precipitates with potentially different chemistry and crystal
structures (as is often the case with carbon replicas). The latter
problem prohibits the use of selected area diffraction techniques for
identifying individual precipitates as you will collect information
from many different precipitates with even the smallest SA aperture.
I'm only slightly surprised that you haven't been able to achieve good
results using nano beam diffraction. We've found that vanadium and
chromium-rich carbides are rapidly degraded by the electron beam. The
nano beam or convergent beam probe tends to damage the crystal
structure of the carbides as soon as the probe touches the
precipitate. We're not sure whether radiolysis or knock-on damage is
the main culprit since we've obtained less than ideal results at both
80kV and at 200kV. We have resorted to imaging the precipitates with
HRTEM and interpreting the FFTs to determine structure but we're still
making some attempts to use convergent beam probes to more rapidly
acquire diffraction patterns.

Good luck and keep us updated of your successes,
Chris
Drexel University - Dynamic Characterization Group

On Wed, Jan 19, 2011 at 3:47 PM, {z.zhou-at-lboro.ac.uk} wrote:
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} Email: z.zhou-at-lboro.ac.uk
} Name: Zhou
}
} Organization: Dept of Materials, Loughborough University, UK
}
} Title-Subject: [Filtered] TEM diffraction 3nm precipitates
}
} Message: Greetings listers,
}
} Iím studying crystal structure of some
} carbides/nitrides precipitates in steel. The
} precipitates are 2-5nm size in a C replica TEM
} specimen, V-, Cr-, and Nb-rich by STEM/EDX.
}
} How can I get electron diffraction or crystal
} structure information of these fine precipitates?
}
} I tried on a TecnaiF20 TEM using nanoprobe spot
} 7, focused on a small particle, then diffraction,
} most of the time I got amorphous rings of C
} support, no obvious diffraction discs. STEM mode
} did indicate some C contamination on the session.
} Assuming minimal C contamination, is it possible
} that this method can give me some sort of
} convergence beam electron diffraction pattern,
} which may help me determine the crystal structure
} of the precipitates?
}
} Iím also open to other methods.
}
} Your advice is highly appreciated.
}
} Zhou
}
} Dr Zhaoxia Zhou
} Dept of Materials
} Loughborough University
} Loughborough, UK
} LE11 3TU
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} ==============================Original Headers==============================
} 15, 24 -- From zaluzec-at-microscopy.com Wed Jan 19 14:33:42 2011
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} 15, 24 -- Subject: viaWWW: TEM diffraction 3nm precipitates
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--
Christopher Winkler
Dynamic Characterization Group
http://www.materials.drexel.edu/dcg/
Drexel University
267-496-0587


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From: kraftpiano-at-gmail.com
Date: Thu, 20 Jan 2011 23:08:26 -0600
Subject: [Microscopy] STM tip advice.

Contents Retrieved from Microscopy Listserver Archives
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I know that I usually talk about SEM applications, but recently I have been given the task of setting up and playing with a scanning tunneling microscope. We have a small length of platinum/iridium wire, and the instructions tell us to take a pair of cutters and gently squeeze and pull the wire to make an atomic scale tip. So far, we have been unsuccessful at producing a tip that functions properly in the machine (It's a Easyscan Nanosurf).

I found some documentation online about etching tungsten tips in KOH, so I sacrificed an SEM filament and tried it- at first it looked good, but the tip still ended up etched entirely flat at the surface of the KOH solution.

The purpose of my playing with this is to try to develop a set of instructions that anyone (Physics undergrads- most of whom are theorists and think less of us experimentalists) can use to get this up and running for one of our lab courses.

Does anyone have any suggestions? Since this is a lab course, there is no budget to be spending $200 per tip on tips that will just end up smashed into the surface of a specimen anyway.

Thanks,

Justin A. Kraft

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From: r-holdford-at-ti.com
Date: Fri, 21 Jan 2011 02:06:38 -0600
Subject: [Microscopy] Re: STM tip advice.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Justin: I used to make my own probe tips (for poking around
inside an IC) with tungsten wire and KOH. We had a set-up under
a microscope that applied a voltage (I think it was 5 volts and
an amp or so but don't remember exactly) between the wire and the
KOH (in a metal container) and you moved the wire in and out of
the KOH to form the tip. The surface tension of the KOH as the
wire moves in and out forms a nice pointy tip. It's best to have
something that controls the position and movement of the wire
mechanically unless you have very steady hands. Welding the wire
to the KOH container at 10-20X magnification will you make you jump!

On 1/20/11 11:08 PM, kraftpiano-at-gmail.com wrote:
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} I know that I usually talk about SEM applications, but recently I have been given the task of setting up and playing with a scanning tunneling microscope. We have a small length of platinum/iridium wire, and the instructions tell us to take a pair of cutters and gently squeeze and pull the wire to make an atomic scale tip. So far, we have been unsuccessful at producing a tip that functions properly in the machine (It's a Easyscan Nanosurf).
}
} I found some documentation online about etching tungsten tips in KOH, so I sacrificed an SEM filament and tried it- at first it looked good, but the tip still ended up etched entirely flat at the surface of the KOH solution.
}
} The purpose of my playing with this is to try to develop a set of instructions that anyone (Physics undergrads- most of whom are theorists and think less of us experimentalists) can use to get this up and running for one of our lab courses.
}
} Does anyone have any suggestions? Since this is a lab course, there is no budget to be spending $200 per tip on tips that will just end up smashed into the surface of a specimen anyway.
}
} Thanks,
}
} Justin A. Kraft
}
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--
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Becky Holdford (r-holdford-at-ti.com)
214-567-0360
SC Packaging FA
Texas Instruments, Inc.
13536 N. Central Expressway MS 940
Dallas, TX 75243
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


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From: benada-at-biomed.cas.cz
Date: Fri, 21 Jan 2011 03:07:44 -0600
Subject: [Microscopy] Re: Re: Microtome History - was "Ernst Ruska"

Contents Retrieved from Microscopy Listserver Archives
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Hello,
One of my friends told me that in the sixties, he and his colleagues were looking for
decommissioned broken black glass covers of gravestones. According to him, it was the best
material for glass knives.

Oldrich

On Thursday 20 of January 2011 16:54:51 you wrote:
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}
} I know at least 2 old microscopists who made
} glass knifes by breaking window glass - one of
} them here at CMU. He went to construction sites
} to get the broken windows.
}
} I'm running down the reference and (I hope) an
} image, but one of the early tries at
} ultramicrotomy was sticking razor blades on a
} centrifuge rotor, then mount the sections on the
} tub, close the lid and turn on the centrifuge.
} The sections where then picked up from inside the
} tub, having been flung willy-nilly around the
} inside.
} (The image is used in the microtomy lecture to
} convince the students thin sectioning could be a
} lot worse than they think it is.)
}
} Phil
}
} } Von: Muþ Wolfgang
} } Gesendet: Donnerstag, 20. J”nner 2011 11:46
} } An: 'joelsheffield-at-gmail.com'
} } Cc: 'microscopy-at-microscopy.com'
} } Betreff: Re: [Microscopy] Microtome History - was "Ernst Ruska"
} }
} } Joel wrote:
} } } Now, the urban legend.Ý
} }
} } I had heard that a group (unnamed) was having a
} } vigorous discussion about the best way to strop
} } a steel knife so as to get the best edge for
} } cutting thin sections.Ý How many strokes, in
} } which direction, which side of the blade, etc.Ý
} } During the discussion, a bottle of Coke was
} } knocked off the table and broke into many
} } pieces.Ý
} } The story goes that one, or another, of these
} } people took up one of the shards, and suggested
} } that it would make a good knife edge.
} } Verification anyone? {
} }
} } Joel
} }
} }
} } Good morning,
} } Dear Joel, dear all
} }
} } I can't tell or verify the above mentioned
} } "Coke-shard-story" but - indeed - I can add
} } information as to the "knocked off
} } table"-part....
} }
} } I had always heared (personal informations from
} } elder REICHERT-freaks and service people, from
} } lectures/lecturers in the 70ies and 80ies as
} } well as personally from H. Sitte himself) that
} } the group around H. SITTE at REICHERT (now
} } LEICA) in the late 1950ies/60ies was/were doing
} } such experiments with {glass plates} .... which
} } were thrown down to the floor... and one of them
} } (it was Sitte himself, as he told me) picked up
} } the shards evaluating the edges of "the most
} } promising one" for sectioning purposes (who of
} } that group had the "invention" to use glass as
} } a} crude { knife (element) I unfortunately don't
} } know.
} }
} } By the way, digging a little bit on this in
} } Google, I found one hint on a document in a
} } German data bank at
} } ==} http://finden.nationallizenzen.de/Author/Home?author=Sitte%2C%20H.Ý
} }
} } {Ein einfaches Ultramikrotom mit thermischem Vorschub} ver–ffentlicht
} } ("A simple ultramicrotome with thermal advance" published)
} } in: Naturwissenschaften , ISSN 1432-1904, Vol. 42 (12. 1955), p. 367-367
} }
} } Note:Ý {Naturwissenschaften} is the former title
} } ofÝÝÝÝÝ Biomedical and Life SciencesÝ (SPRINGER)
} } Another source:Ý http://www.freepatentsonline.com/3828641.html:
} } United States Patent US3828641:
} }
} } ==} Apparatus for adjusting the elevation of a
} } specimen in microtomes, particularly
} } ultramicrotomes
} } Inventor:Ý Hellmuth Sitte, HOMBURG (not Humburg
} } [as written in the patent document!]/Saar
} } Germany)
} } Assignee:Ý C.Reichert Optische Werke AG, Vienna, Austria)
} } Filed:Ý Nov. 10,1972
} }
} } Also see
} } http://books.google.at/books?id=JULNEc9rmUUC&pg=PA154&lpg=PA154&dq=Sitte+a
} } nd+ultramicrotome&source=bl&ots=jTsBEi9KOU&sig=EbNY_Cfv_isjcFo8MhMpJfl5Jb8
} } &hl=de&ei=aAs4Tf_AIp2ShAfA-tmMCg&sa=X&oi=book_result&ct=result&resnum=2&ve
} } d=0CCEQ6AEwAQ#v=onepage&q=Sitte%20and%20ultramicrotome&f=false (From the
} } book Michael J. Dykstra, Laura E.
} } Reuss - 2003Ý (see page "History: in the text
} } displayed
} } the Reichert OMU-1 (before 1964, perhaps see
} } document above in {Naturwissenschaften} 1955)
} } from Sitte described as having thermal advance,
} } Sitte was never happy with, since 1964: OMU-2
} } with thermal advance....
} }
} } This just for your pleasure....
} } (and I sure that searching for Sitte Hellmuth or
} } Sitte and microtome will find some results more
} } on that interesting and exciting "history" of
} } ultramicrotomy advances.....
} }
} } Best wishes and regards,
} } have a good and successful rest of the week and a beautiful weekend,
} }
} } Wolfgang MUSS (Ph.D.)
} } EM-Lab Gen.Hosp. SALK-LKH
} } SALZBURG
} } AUSTRIA
} }
} } } -----Urspr¸ngliche Nachricht-----
} } } Von: joelsheffield-at-gmail.com [mailto:joelsheffield-at-gmail.com]
} } } Gesendet: Donnerstag, 20. J”nner 2011 06:51
} } } An: Muþ Wolfgang
} } } Betreff: [Microscopy] Microtome History - was "Ernst Ruska"
} } }
} } } -----------------------------------------------------------------------
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} } }
} } } It is certainly clear that there are many interesting stories --some
} } } urban legends, and some insights into the minds of those that founded
} } } the discipline of thin section electron microscopy.
} } } During the mid '70's, I taught an EM course at Rutgers, Camden.
} } } In the basement, along with an RCA EMU-2 (!) was a thermal advance
} } } microtome that I was told was developed by Sjostrand.
} } } This thing consisted of a disk-like plate, about 4-5 inches in
} } } diameter, with an eccentrically mounted arm that stuck out of the
} } } plate.Ý The arm had a chuck for a tissue sample, and a heating coil.
} } } The plate itself was mounted in a frame and lubricated with oil --the
} } } plate acted like a large oil bearing.Ý The plate was linked to a motor
} } } on the wall by a long V belt (to minimize vibration), and the entire
} } } plate rotated, bringing the block past the knife on each rotation.Ý The
} } } sections that resulted tended to be arc shaped.Ý We got it working, but
} } } it was a terrifying thing to see.Ý I wonder if anyone in this group
} } } remembers this type of machine -- assuming that my description is
} } } comprehensible.
} } }
} } } The other microtome that I used, and really admire, was the Huxley
} } } microtome, originally sold by Cambridge, and ultimately marketed by
} } } LKB.Ý Although it used a mechanical advance, all of the movements of
} } } the cutting arm were made by bending sheets of spring steel, so that
} } } there were no surfaces that moved against each other.Ý Moreover, the
} } } cutting stroke was controlled by an oil-filled damper, to minimize
} } } chatter. -- a remarkable and stable machine.
} } }
} } } Now, the urban legend.
} } } I had heard that a group (unnamed) was having a vigorous discussion
} } } about the best way to strop a steel knife so as to get the best edge
} } } for cutting thin sections.Ý How many strokes, in which direction, which
} } } side of the blade, etc.Ý During the discussion, a bottle of Coke was
} } } knocked off the table and broke into many pieces.
} } } The story goes that one, or another, of these people took up one of the
} } } shards, and suggested that it would make a good knife edge.
} } } Verification anyone?
} } }
} } } Joel
} } }
} } } --
} } } Joel B. Sheffield, Ph.D.
} } } Biology Department, Temple University
} } } 1900 North 12th Street
} } } Philadelphia, PA 19122
} } } jbs-at-temple.edu
} } } (215) 204 8839, fax (215) 204 0486
} } } http://astro.temple.edu/~jbs


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From: protrain-at-emcourses.com
Date: Fri, 21 Jan 2011 05:45:19 -0600
Subject: [Microscopy] viaWWW: SEM imaging of wax

Contents Retrieved from Microscopy Listserver Archives
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Hi

All I have been watching the advice on this problem and whilst I agree with
all that has been said may I offer a little more?

I have had experience with materials that forced us to use cryo within an
investigation, then we (the client and I) purchased an early FEGSEM. As you
may guess the cryo kit would not fit onto the FEG! Forced to take another
route we found that being very careful in the FEG we could work on the very
sensitive material without any apparent problems.

The settings we used were those typical for sensitive materials:-

1. Coat the specimen with a minimal current and an extended working
distance e.g. normal would be ~5cm we used 7cm from memory(?)
2. Use a low emission current.
3. Use a spot size/probe current near the lowest limit of the
instrument.
4. Use the out of lens detector for minimal charge (~15mm WD)

I hope that this may help?

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: stefan.diller-at-t-online.de [mailto:stefan.diller-at-t-online.de]
Sent: 20 January 2011 17:58
To: protrain-at-emcourses.com

Dear All,
I had the same problem visualizing bee wax structures and not owning an ESEM
;-)

Solution: I put the structure on a large specimen mount, putting 2 bands of
conductive adhesive tape left and right on top and put
it in my normal Pt-sputtercoater.
Concerning the heat during sputtering, I took off the sputter-head and added
a second glass vessel (I took it from my
carbon-coater) on top of the first.
Did ca. 10-15 sputtering-runs with minimal current (10mA) and finally put it
in the scope at 5-6kV.

See images at
http://www.electronmicroscopy.info/wax

It`s a bit of a crude solution but it works.
Concerning the thickness of your wax layers you may also try the same thing
with an high-vac chromecoater...


Best wishes,
Stefan

-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 20.01.11 16:00, schrieb nizets2-at-yahoo.com:
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} Just a question disguised in an answer: wouldn't it be the right
application to
} make a replica?
}
} Stephane
}
}
} ----- Original Message ----
} X-from: "anthonyribaudo3-at-gmail.com" {anthonyribaudo3-at-gmail.com}
} To: nizets2-at-yahoo.com
} Sent: Wed, January 19, 2011 9:39:49 PM
} Subject: [Microscopy] viaWWW: SEM imaging of wax
}
}
}
}
}
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} Email: anthonyribaudo3-at-gmail.com
} Name: Anthony Ribaudo
}
} Organization: TRI Princeton
}
} Title-Subject: [Filtered] SEM imaging of wax
}
} Message: Can anyone suggest guidelines for imaging a paraffin wax
} coating on a metal or polymeric substrate via FESEM. The plan is to
} detect the wax layer that is thought to be several hundred nanometers
} thick? Are there any waxes that would be more stable to image under
} the electron beam than paraffin wax?
}
} Anthony Ribaudo
} TRI Princeton
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} Login Host: 108.5.140.150
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From: jacques.faerber-at-ipcms.u-strasbg.fr
Date: Fri, 21 Jan 2011 09:29:38 -0600
Subject: [Microscopy] Re: Environmental SEM for Biological Work

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

I'm not a biologist (most materials science) nor experimented in ESEM
(only high vac SEM), but I've on my shelve a thermoelectric module
(Pelletier/Seebeck device) which is 1.5x4 cm in dimensions.

Have a look at http://www.knap.at/datenblaetter/pel/pel_sup_kat-tem-e.pdf,
where you can find a great variety of such devices. They give a Dt° in
the 70°C range, and are avaible in several dimensions and power. From
10x10 to 62x62 are proposed, but rectanglaire or round shapes too.
Of coarse, as an ESEM is under (bad) vacuum, thermal dissipation of the
hot side is low. There is probably room enough to put a heat sink on the
stage (copper block), but possibly one would need a water cooled one,
what is probably not necessary on the device provided by FEI.
If you have the possibilty to build something yourselve, it could be
much cheaper. Of coarse without performences waranty !

Hope it helps

J. Faerber
IPCMS-GSI
(Institut de Physique et Chimie des Matériaux de Strasbourg
Groupe Surface et Interfaces)
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail Jacques.Faerber-at-ipcms.u-strasbg.fr


On 20/01/2011 13:02, David.Patton-at-uwe.ac.uk wrote:
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} Our Philips (now FEI) XL30 ESEM has a Peltier stage which takes stubs about 10mm in diameter.
}
} You can use our ESEM without cooling for eg materials samples but we you want liquid water for biological samples we cool to 5 degrees and 6.5 Torr. I have heard that the newer Quanta ESEMs can have a chamber pressure up to 20 Torr (cf 10 Torr for the XL30 ESEM). This allows water to be observed without cooling, I believe.
}
} Does anyone know if this means the sample can be any size one likes?
}
} Dave
}
} -----Original Message-----
} X-from: rfoley-at-uab.edu [mailto:rfoley-at-uab.edu]
} Sent: 19 January 2011 22:53
} To: David Patton
} Subject: [Microscopy] viaWWW: Environmental SEM for Biological Work
}
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} Email: rfoley-at-uab.edu
} Name: Robin Foley
}
} Organization: UAB
}
} Title-Subject: [Filtered] Environmental SEM for Biological Work
}
} Message: Is there heavy use of ESEM for biological SEM? What is
} commonly done on biological ESEM samples? We're looking at
} purchasing an environmental SEM and the sales rep. tells us we will
} need a Peltier stage to cool the sample to look at wet samples.
} Unfortunately, the maximum sample size for the Peltier stage is 3 mm
} across. This seems tiny to me for an SEM. Are there many biological
} ESEM applications that don't require the sample to be wet?
}
} Thanks,
}
} Robin Foley (who spends most of her SEM time looking at metals,
} ceramics and polymers!)
}
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From: DusevichV-at-umkc.edu
Date: Fri, 21 Jan 2011 10:44:52 -0600
Subject: [Microscopy] RE: EDS line scans and time on my hands

Contents Retrieved from Microscopy Listserver Archives
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Frank,

Have you run spot analysis (boundary and middle of a grain)
to confirm you can detect difference? From my experience with
iron specimens, it is a pretty tough task to see boundary segregations
even with WDS (at least when it is not a second phase, like carbides).
X-from spot analysis you can estimate time needed for acquisition.

I do not know what element you are going to analyze, but if it is
phosphorous, 20 kV is a way too high. For P you can use 4-5 kV and
have a nice small zone of interaction.

Good luck

Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} from: Frank_Karl-at-lincolnelectric.com
} Date: 01/19/2011 05:45 AM
}
} I've been thinking about EDS line scans and I'm attempting to maximize
} The data I collect.
}
} I run at 20 KV on iron samples so my electron interaction range is
} between
} 1.5 to 2.3um (Berthe or K-O range calculations). According to data
} provided by EDAX at 1024 horizontal pixels each pixel is around 0.8 um
} at
} 700x. So right away I see if each image pixel represents a data point,
} I'm
} sampling about 2 pixel volumes per data point. Looking for a sudden
} and
} sharp change in element concentration seem difficult, but wait there's
} more. Let us introduce another plot complication.
}
} My customers don't want to scan the entire image, tooo much data!
}
} So I scan a smaller section of image described above and instruct the
} computer to take 512 data points along a line that might only be 400
} (visual estimate from screen) image pixels long.
}
} So... Should I reduce the image resolution so that each image pixel
} will be
} one data point and scan the entire image? Would it be better to lower
} the
} magnification so the image pixels are larger (say 1.2um ). I could go
} to
} 100x and 512 horizontal image pixel so each image pixel is 2.3um?
}
} I'm looking for slight changes in element concentration at grain
} boundaries
} and precipitates and of course I want to produce the most meaningful
} data
} possible. I'm running at conditions that suggest my electron
} interactive
} volume is larger than my spatial resolution as to produce "continuous"
} data.
}
} Or am I just over thinking the process?
}
} Any suggestion or comments would be welcome
}
} Frank
} Lincoln Electric Company
} --
} *************************************************************
} Note:
} The information contained in this message may be
} privileged and confidential and protected from disclosure. If
} the reader of this message is not the intended recipient, or
} an employee or agent responsible for delivering this message
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} communication in error, please notify us immediately by
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From: cdh1-at-cdc.gov
Date: Fri, 21 Jan 2011 11:51:58 -0600
Subject: [Microscopy] Protocol for Norovirus TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Listers,

I replied to Debby Sherman offline. In general stool specimen
suspensions can be fixed in 2.5-5% paraformaldehyde prior to shipping.
The specimens are then rendered noninfectious and can be maintained for
an indefinite period at 4 degrees C. Multiple freezing and thawing, on
occasion, can cause deleterious effects to viruses sufficient to render
them difficult to identify by diagnostic negative stain electron
microscopy.

Best regards,

Charles

Charles Humphrey
US Centers for Disease Control and Prevention
Mailstop G32
1600 Clifton Rd.
Atlanta, GA 30333


-----Original Message-----
X-from: dsherman-at-purdue.edu [mailto:dsherman-at-purdue.edu]
Sent: Wednesday, January 19, 2011 4:46 PM
To: Humphrey, Charles (CDC/OID/NCEZID)

Hi all,

We will be imaging a fairly large number of norovirus samples using
negative
staining. This is just for sample screening to document the presence or
absence of the virus.

The samples could be sent in fresh but I thought it might be better to
fix
them prior to shipping so that they are not a health hazard. That might
also
allow us to store them unfrozen for an extended period of time (months)
with
reduced chance of deterioration or contamination.

Does anyone have a validated protocol that they are willing to share? I
used to know someone at the CDC who did TEM but no longer have that
contact.

Thanks,
Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/



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From: cpawlowicz-at-ubmtechinsights.com
Date: Fri, 21 Jan 2011 12:09:20 -0600
Subject: [Microscopy] RE: STM tip advice.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Justin,

What is it about your tips that don't function? Are you sure it's not the sample or settings on the tool?

I spent some time last year doing STM with a DI3100 (/Veeco/Bruker) and made many many tips using the side cutter + pull method using Pt/Ir wire. I got some great images from HOPG samples to prove to myself that it was working properly.

The HOPG is highly recommended to get familiar with things (I got my sample from SPI, but Pella also has them). It will guarantee that your sample is not the problem, and allow low-mag imaging (over steps in layers) to very high mag imaging (lattice) to confirm that you have everything working properly.

What worked well for me was I would cut a tip slightly longer than I needed, then held one end with pliers while diagonal cutting/pulling away just the tip at the other end. The direction of cut started nearer the fixed end/pliers and ended up towards the free end. The part that was cut off (stuck to the cutters, flew across the table etc) was junk, the part left gripped in the pliers had a cut/stretched shape but was torn and jagged at the very end (under a microscope).

If you think about the way the sidecutters cut through the metal and plan on having the very end 'torn' you should be able to reliably get excellent tips. I taught the method to a couple of other people and they quickly managed to make similar tips without much trouble.

Chris Pawlowicz, B.Eng
Manager, Lab Development
UBM TechInsights
3000 Solandt Rd Ottawa ON Canada K2K 2X2
T: +1 613 576 0150
F: +1 613 599 6501
E: cpawlowicz-at-ubmtechinsights.com


---------------------------------------------------------------------------

I know that I usually talk about SEM applications, but recently I have been given the task of setting up and playing with a scanning tunneling microscope. We have a small length of platinum/iridium wire, and the instructions tell us to take a pair of cutters and gently squeeze and pull the wire to make an atomic scale tip. So far, we have been unsuccessful at producing a tip that functions properly in the machine (It's a Easyscan Nanosurf).

I found some documentation online about etching tungsten tips in KOH, so I sacrificed an SEM filament and tried it- at first it looked good, but the tip still ended up etched entirely flat at the surface of the KOH solution.

The purpose of my playing with this is to try to develop a set of instructions that anyone (Physics undergrads- most of whom are theorists and think less of us experimentalists) can use to get this up and running for one of our lab courses.

Does anyone have any suggestions? Since this is a lab course, there is no budget to be spending $200 per tip on tips that will just end up smashed into the surface of a specimen anyway.

Thanks,

Justin A. Kraft


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From: FMonson-at-wcupa.edu
Date: Fri, 21 Jan 2011 13:56:00 -0600
Subject: [Microscopy] Re: Environmental SEM for Biological Work

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Something is always going on in VP and/or Environmental SEM: http://www.microscopy.org.au/ACMM20/VPSEMWorkshopOutline.pdf
And, even a book: http://www.amazon.com/Principles-Practice-Variable-Pressure-Environmental/dp/0470065400

I have attended VP workshops at M&M meetings and I am reading the book.

Know it before you buy it. Our Quanta 400 (100mm stage) Mk1 has a water-cooled thermoelectric cold stage that will permit a specimen no larger than about 7mm. NOTE: PV=NRT is the key when one uses water vapor to pressurize the environment of an hydrated specimen.

Brendan Griffin has, I believe, done his original work on a XL-30, so he might have some suggestions as to what you might do in your deliberations.

My offerings of advice are as follows:
1. W or FEG - depends on requirements for resolution and data acquisition and analysis, because FEG is more expensive to maintain but absolutely necessary for high res imaging work alone.
2. Pressure ranges in VP SEM range from 1 Torr max to 20+ Torr max depending on platform, and therefore, the choice of platform will be based on range of expected uses to which the tool will be put and which gases one may wish to use.
3. Examples of uses we make of VP
a. With our fully automated Oxford INCA EDS w/Feature/GSR, I have surveyed a 95 x 95 x 10mm slab of rock for grayscale thresholded ROI's or OOI's (2 sec acquisitions / object identified in a field) for OOI's so that the geologist could determine the area of the rock from which s/he would retrieve a thin section for further survey and probable selection for electron probe analysis (for dating).
b. uncoated microfossils for imaging and retrieval.
c. Backscatter image montages of large specimens (e.g. up to size in 1)
d. There were rumors that at least on user imaged a specimen using H2SO4 vapor.
e. Montage maps of large inclusions.
4. Before determining a choice, carefully create a list of expected and projected applications.
a. The list defines the tool, if the list is very carefully assembled.
5. ALWAYS make know the total cost of ownership, including personnel, for a decade, and include in purchase as much annual service as possible.
6. Carefully spec the operating systems on the controlling computers with a sure knowledge of what will happen when the OS ceases to be supported, and user interface program will cease being supported by vendor. With our ESEM, the UI lost support before the OS (Win 2k Pro) did.
a. My learned approach would be to assure management that THIS part of future support is clearly understood by both the supplier and the purchaser, with clear guarantees by the vendor in the purchase contract. That is, when/if there is a clear glitch in the Vendor's UI, there is a clear guarantee of support for a declared period of time.
b. Recognize that each of your instruments may be the only one in the world to manifest a specific problem, and that the vendor's incentive is driven by numbers.
c. Require a list of 3rd-party parts of the system you are purchasing. You will want to know how fare in the future your legacy bottlenecks might be.
d. Recognize that in my world, at least, a control PC may cost a few to tens of thousands of dollars when replaced by the vendor when there is no contract. Ask what a stage replacement is at the moment, a control PC, a User Interface upgrade, and an estimate of what an upgrade of the disk operating system of the PC and the tool might be in 3-7 years (no vendor wants to give such an estimate, but remember that you have what they want.
e. Recognize that you are likely to have any downtime reduced by turning service over to a 3rd party for an instrument under 10 years of age. Our TEM, after 8 years in service is quite similar in all respects to the model that is currently being marketed by FEI. FEI service on everything, and I strongly recommend it.
7. Make a set of the support documentation and parts lists a line item on your specification, and that if part numbers are changed in the future, you will be able to acquire them at no cost (for as long as you own the instrument).
7. The other matter is less obvious. Carefully spec your requirements for HV regulation and stability, in the context of your requirements for stability during an analysis as well as long-term reproducibility. This is difficult, but the HV system quite sophisticated and is repaired by total replacement rather than component replacement.

Finally, when our web site is back on line sometime next week, there are several papers related to VP SEM on the "Links" page that might be of interest to you and your prospective users.

Hope this helps,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: jacques.faerber-at-ipcms.u-strasbg.fr [mailto:jacques.faerber-at-ipcms.u-strasbg.fr]
Sent: Friday, January 21, 2011 10:41 AM
To: Monson, Frederick

Hi

I'm not a biologist (most materials science) nor experimented in ESEM
(only high vac SEM), but I've on my shelve a thermoelectric module
(Pelletier/Seebeck device) which is 1.5x4 cm in dimensions.

Have a look at http://www.knap.at/datenblaetter/pel/pel_sup_kat-tem-e.pdf,
where you can find a great variety of such devices. They give a Dt° in
the 70°C range, and are avaible in several dimensions and power. From
10x10 to 62x62 are proposed, but rectanglaire or round shapes too.
Of coarse, as an ESEM is under (bad) vacuum, thermal dissipation of the
hot side is low. There is probably room enough to put a heat sink on the
stage (copper block), but possibly one would need a water cooled one,
what is probably not necessary on the device provided by FEI.
If you have the possibilty to build something yourselve, it could be
much cheaper. Of coarse without performences waranty !

Hope it helps

J. Faerber
IPCMS-GSI
(Institut de Physique et Chimie des Matériaux de Strasbourg
Groupe Surface et Interfaces)
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail Jacques.Faerber-at-ipcms.u-strasbg.fr


On 20/01/2011 13:02, David.Patton-at-uwe.ac.uk wrote:
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} Our Philips (now FEI) XL30 ESEM has a Peltier stage which takes stubs about 10mm in diameter.
}
} You can use our ESEM without cooling for eg materials samples but we you want liquid water for biological samples we cool to 5 degrees and 6.5 Torr. I have heard that the newer Quanta ESEMs can have a chamber pressure up to 20 Torr (cf 10 Torr for the XL30 ESEM). This allows water to be observed without cooling, I believe.
}
} Does anyone know if this means the sample can be any size one likes?
}
} Dave
}
} -----Original Message-----
} X-from: rfoley-at-uab.edu [mailto:rfoley-at-uab.edu]
} Sent: 19 January 2011 22:53
} To: David Patton
} Subject: [Microscopy] viaWWW: Environmental SEM for Biological Work
}
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} Email: rfoley-at-uab.edu
} Name: Robin Foley
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} Organization: UAB
}
} Title-Subject: [Filtered] Environmental SEM for Biological Work
}
} Message: Is there heavy use of ESEM for biological SEM? What is
} commonly done on biological ESEM samples? We're looking at
} purchasing an environmental SEM and the sales rep. tells us we will
} need a Peltier stage to cool the sample to look at wet samples.
} Unfortunately, the maximum sample size for the Peltier stage is 3 mm
} across. This seems tiny to me for an SEM. Are there many biological
} ESEM applications that don't require the sample to be wet?
}
} Thanks,
}
} Robin Foley (who spends most of her SEM time looking at metals,
} ceramics and polymers!)
}
}
}
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From: kenconverse-at-qualityimages.biz
Date: Fri, 21 Jan 2011 15:16:34 -0600
Subject: [Microscopy] Re: Environmental SEM for Biological Work

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Fred,
Could you elaborate on item 6e? I'm a little confused.

I like some of your ideas to illuminate the probable life span of a system.
Back when dinosaurs roamed the Earth, most people didn't pay much attention
to life span because it was (usually correctly) assumed to be long.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
Fax 207-647-2688
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: FMonson-at-wcupa.edu [mailto:FMonson-at-wcupa.edu]
Sent: Friday, January 21, 2011 2:58 PM
To: kenconverse-at-qualityimages.biz

Something is always going on in VP and/or Environmental SEM:
http://www.microscopy.org.au/ACMM20/VPSEMWorkshopOutline.pdf
And, even a book:
http://www.amazon.com/Principles-Practice-Variable-Pressure-Environmental/dp
/0470065400

I have attended VP workshops at M&M meetings and I am reading the book.

Know it before you buy it. Our Quanta 400 (100mm stage) Mk1 has a
water-cooled thermoelectric cold stage that will permit a specimen no larger
than about 7mm. NOTE: PV=NRT is the key when one uses water vapor to
pressurize the environment of an hydrated specimen.

Brendan Griffin has, I believe, done his original work on a XL-30, so he
might have some suggestions as to what you might do in your deliberations.

My offerings of advice are as follows:
1. W or FEG - depends on requirements for resolution and data
acquisition and analysis, because FEG is more expensive to maintain but
absolutely necessary for high res imaging work alone.
2. Pressure ranges in VP SEM range from 1 Torr max to 20+ Torr
max depending on platform, and therefore, the choice of platform will be
based on range of expected uses to which the tool will be put and which
gases one may wish to use.
3. Examples of uses we make of VP
a. With our fully automated Oxford INCA EDS
w/Feature/GSR, I have surveyed a 95 x 95 x 10mm slab of rock for grayscale
thresholded ROI's or OOI's (2 sec acquisitions / object identified in a
field) for OOI's so that the geologist could determine the area of the rock
from which s/he would retrieve a thin section for further survey and
probable selection for electron probe analysis (for dating).
b. uncoated microfossils for imaging and retrieval.
c. Backscatter image montages of large specimens (e.g.
up to size in 1)
d. There were rumors that at least on user imaged a
specimen using H2SO4 vapor.
e. Montage maps of large inclusions.
4. Before determining a choice, carefully create a list of
expected and projected applications.
a. The list defines the tool, if the list is very
carefully assembled.
5. ALWAYS make know the total cost of ownership, including
personnel, for a decade, and include in purchase as much annual service as
possible.
6. Carefully spec the operating systems on the controlling
computers with a sure knowledge of what will happen when the OS ceases to be
supported, and user interface program will cease being supported by vendor.
With our ESEM, the UI lost support before the OS (Win 2k Pro) did.
a. My learned approach would be to assure management
that THIS part of future support is clearly understood by both the supplier
and the purchaser, with clear guarantees by the vendor in the purchase
contract. That is, when/if there is a clear glitch in the Vendor's UI,
there is a clear guarantee of support for a declared period of time.
b. Recognize that each of your instruments may be the
only one in the world to manifest a specific problem, and that the vendor's
incentive is driven by numbers.
c. Require a list of 3rd-party parts of the system you
are purchasing. You will want to know how fare in the future your legacy
bottlenecks might be.
d. Recognize that in my world, at least, a control PC
may cost a few to tens of thousands of dollars when replaced by the vendor
when there is no contract. Ask what a stage replacement is at the moment, a
control PC, a User Interface upgrade, and an estimate of what an upgrade of
the disk operating system of the PC and the tool might be in 3-7 years (no
vendor wants to give such an estimate, but remember that you have what they
want.
e. Recognize that you are likely to have any downtime
reduced by turning service over to a 3rd party for an instrument under 10
years of age. Our TEM, after 8 years in service is quite similar in all
respects to the model that is currently being marketed by FEI. FEI service
on everything, and I strongly recommend it.
7. Make a set of the support documentation and parts lists a
line item on your specification, and that if part numbers are changed in the
future, you will be able to acquire them at no cost (for as long as you own
the instrument).
7. The other matter is less obvious. Carefully spec your
requirements for HV regulation and stability, in the context of your
requirements for stability during an analysis as well as long-term
reproducibility. This is difficult, but the HV system quite sophisticated
and is repaired by total replacement rather than component replacement.

Finally, when our web site is back on line sometime next week, there are
several papers related to VP SEM on the "Links" page that might be of
interest to you and your prospective users.

Hope this helps,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: jacques.faerber-at-ipcms.u-strasbg.fr
[mailto:jacques.faerber-at-ipcms.u-strasbg.fr]
Sent: Friday, January 21, 2011 10:41 AM
To: Monson, Frederick

Hi

I'm not a biologist (most materials science) nor experimented in ESEM
(only high vac SEM), but I've on my shelve a thermoelectric module
(Pelletier/Seebeck device) which is 1.5x4 cm in dimensions.

Have a look at http://www.knap.at/datenblaetter/pel/pel_sup_kat-tem-e.pdf,
where you can find a great variety of such devices. They give a Dt° in
the 70°C range, and are avaible in several dimensions and power. From
10x10 to 62x62 are proposed, but rectanglaire or round shapes too.
Of coarse, as an ESEM is under (bad) vacuum, thermal dissipation of the
hot side is low. There is probably room enough to put a heat sink on the
stage (copper block), but possibly one would need a water cooled one,
what is probably not necessary on the device provided by FEI.
If you have the possibilty to build something yourselve, it could be
much cheaper. Of coarse without performences waranty !

Hope it helps

J. Faerber
IPCMS-GSI
(Institut de Physique et Chimie des Matériaux de Strasbourg
Groupe Surface et Interfaces)
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail Jacques.Faerber-at-ipcms.u-strasbg.fr


On 20/01/2011 13:02, David.Patton-at-uwe.ac.uk wrote:
}
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} Our Philips (now FEI) XL30 ESEM has a Peltier stage which takes stubs
about 10mm in diameter.
}
} You can use our ESEM without cooling for eg materials samples but we you
want liquid water for biological samples we cool to 5 degrees and 6.5 Torr.
I have heard that the newer Quanta ESEMs can have a chamber pressure up to
20 Torr (cf 10 Torr for the XL30 ESEM). This allows water to be observed
without cooling, I believe.
}
} Does anyone know if this means the sample can be any size one likes?
}
} Dave
}
} -----Original Message-----
} X-from: rfoley-at-uab.edu [mailto:rfoley-at-uab.edu]
} Sent: 19 January 2011 22:53
} To: David Patton
} Subject: [Microscopy] viaWWW: Environmental SEM for Biological Work
}
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} Email: rfoley-at-uab.edu
} Name: Robin Foley
}
} Organization: UAB
}
} Title-Subject: [Filtered] Environmental SEM for Biological Work
}
} Message: Is there heavy use of ESEM for biological SEM? What is
} commonly done on biological ESEM samples? We're looking at
} purchasing an environmental SEM and the sales rep. tells us we will
} need a Peltier stage to cool the sample to look at wet samples.
} Unfortunately, the maximum sample size for the Peltier stage is 3 mm
} across. This seems tiny to me for an SEM. Are there many biological
} ESEM applications that don't require the sample to be wet?
}
} Thanks,
}
} Robin Foley (who spends most of her SEM time looking at metals,
} ceramics and polymers!)
}
}
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From: donc-at-asmicro.com
Date: Sat, 22 Jan 2011 15:49:25 -0600
Subject: [Microscopy] Re: SEM stardard grid - high resolution

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jun asked for a calibration grid with pitch near 0.1 um.
My company makes and sells two relevant products:
-a 70-nm pitch 1-dimensional pattern (lines and spaces) and
-a 144-nm pitch square grid.
These are available as ordinary calibration specimens or as standards
traceable to the international meter. The traceable standards come with a
test report that shows both the pitch value and its uncertainty.
Please find further details at:
http://www.asmicro.com/Supplies/utc.htm - traceable calibration specimens.

http://www.asmicro.com/Supplies/150-2D-Calibration-Specimen.htm

http://www.asmicro.com/Supplies/70-1D.htm



regards,
Don
=============================================
Don Chernoff, Ph.D., President
Advanced Surface Microscopy, Inc. E-Mail: donc-at-asmicro.com
3250 N. Post Rd., Ste. 120 Voice: 317-895-5630
INDIANAPOLIS IN 46226 USA Toll free: 800-374-8557 (in USA & Canada)
web: http://www.asmicro.com Fax: 317-895-5652
[business activities: analytical services in AFM, AFM probes, consulting,
training,
calibration and test specimens, calibration and measurement software,
used NanoScope equipment.] 2009-2010 is our 20th year in business!
=============================================

----- Original Message -----
From: junhe1970-at-gmail.com
To: donc-at-asmicro.com
Sent: Tuesday, December 21, 2010 8:05 AM
Subject: [a] [Microscopy] viaWWW: SEM stardard grid





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Email: junhe1970-at-gmail.com
Name: jun

Title-Subject: [Filtered] SEM stardard grid

Message: We frequently uses SEM ( Hitachi 4700, FE) to measure some
wafer cross-section features.
The measurement result is sometimes off the mark .
I wonder if some one here could recommend some fine grid (0.1
um)standard
Jun



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21, 35 -- From donc-at-asmicro.com Sat Jan 22 15:49:25 2011
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21, 35 -- References: {201012211305.oBLD5eww027041-at-ns.microscopy.com}
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From: vakimler-at-med.wayne.edu
Date: Mon, 24 Jan 2011 11:11:03 -0600
Subject: [Microscopy] viaWWW: Post-embedding/sectioning FluoroNanogold Labeling for TEM

Contents Retrieved from Microscopy Listserver Archives
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Email: vakimler-at-med.wayne.edu
Name: Vickie Kimler

Organization: Wayne State Univ. School of Medicine

Title-Subject: [Filtered] Post-embedding/sectioning FluoroNanogold
Labeling for TEM

Message: Hello,
Some of our antigens are difficult to label in mammalian fat cells
and muscles, such as particular lipid droplet proteins. I have tried
several methods of antigen unmasking and probe maintenance in
post-sectioning fluoronanogold labeling, including absence of uranyl
acetate in the LR-White embedding medium, reduction of osmium
post-fixation concentration to reduce etching propensity of
silver-enhanced gold probes, antigen unmasking with oxidizing (sodium
metaperiodate) and reducing (sodium borohydride) agents and Tris base
pH 10.
I have reduced my glutaraldehyde concentration to 0.10% and
maintained paraformaldehyde at 2%.

Pre-embedding fluoronanogold labeling appears to work with the
absence of glutaraldehyde in the fixative, however the ultrastructure
is quite compromised, as one would expect by TEM.

I have been thinking now of using LR-Gold, until I hear from some
experts on any other suggestions. Thank you very much!
Vickie



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From: j.knowles-at-ucl.ac.uk
Date: Mon, 24 Jan 2011 11:11:55 -0600
Subject: [Microscopy] viaWWW: Electronics side of an EDX system

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Email: j.knowles-at-ucl.ac.uk
Name: Jonathan Knowles

Organization: UCL

Title-Subject: [Filtered] Electronics side of an EDX system

Message: Hi

We have inherited an EDX system which seems to work OK (sorry I don't
have details to hand but wanted to ask this before I forgot!). The
system works OK, but the electronics side is really ancient (It has a
microVAX type drive with about 20Mb storage to run the OS and
software) and am concerned that it might die some time. I wondered if
anyone had ever built some more up to date hardware/interface? The
connections for the EDX consist of a BNC for the HT and then a 9 pin
connector presumably for data.

Thanks

Jonathan

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From: xyang-at-SMU.CA
Date: Mon, 24 Jan 2011 13:12:57 -0600
Subject: [Microscopy] RE: middle mouse button problem in LEO SEM system

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Dear Listers,

I am running a LEO1450VP SEM and encounter a problem related to the use of
the mouse.  The middle button of a 3-key mouse is used extremely in LEO32
software and suddenly the software disable the use of the middle button.

I am able to use both left and right button, except the middle one.  I also
tried to edit the toolbar to set the middle button’s function. However, both
the “OK” and “Apply” buttons were deactivated so the settings I made were
useless.

If anyone has similar experiences, please kindly contact me.  Thank you very
much.

Sean
EMC -at- Saint Mary’s University
Halifax, NS
xyang-at-smu.ca




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From: reynolds-at-vt.edu
Date: Mon, 24 Jan 2011 14:02:35 -0600
Subject: [Microscopy] viaWWW: Fwd: EDS line scans and time on my hands

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Email: reynolds-at-vt.edu
Name: Bill Reynolds

Organization: Virginia Tech

Title-Subject: [Filtered] Fwd: EDS line scans and time on my hands

Message: This comment does not directly address Frank Karl's original
question about pixel size and measurement spacing, but it relates to
the problem of detecting small changes in boundary concentrations.

Measuring grain boundary concentrations from EDS line scans is
problematic because the electron beam geometry is always convoluted
with the solute distribution in the sample. To determine, say, the
maximum solute concentration at a grain boundary, you have to know
the extent of beam broadening in the sample AND have an accurate
model for
how the solute is distributed across the boundary. If you don't
already know where the solute is, you have to make an educated guess.
For example, you might assume the solute is confined to a boundary
region 1 nm thick so you can back-out a boundary concentration from
the measured EDS profile, and the probe size with broadening. That
involves a lot of assumptions and uncertainties.

A clever alternate strategy is to make an integrated measurement
across a boundary to determine the total excess solute associated
with the boundary (the excess solute is the amount of solute per unit
area of grain boundary). This quantity is calculated from the
difference between the amount of solute found in a sample volume that
includes the boundary and the amount of solute found in an equivalent
volume without the boundary (but located nearby).

The excess solute is not a concentration, and it tells you nothing
about the solute distribution at a boundary, but it has some distinct
advantages when trying to quantify solute enrichment or depletion at
a boundary: it can be measured without knowing much about the probe
size, beam broadening, or boundary structure, and you do not need to
assume anything about the solute profile. Because the method employs
a scanned box that straddles a boundary, it has better counting
statistics than single line scans, and that makes it pretty good at
detecting small solute enrichments.

The technique was developed with STEM in mind, but I don't see any
reason why it cannot be used for EDS measurements in an SEM. Here
are some example investigations that used the method:
J.A.S. Ikeda, Y.-M. Chiang, and C.G. Madras: Ceram. Trans., 1991,
vol. 24, pp. 341-348
A. J. Garratt-Reed: Proceedings of the 50th Annual Meeting, EMSA,
1992, p. 1206-1207
H.A. Fletcher, et al.: Scripta Mater., 2001, vol. 45 (5), pp. 561-567
E. S. Humphreys, et al. Metall. Mat. Trans A. vol 35A (4), 2004, pp 1223-1235.

Regards,
Bill Reynolds
Virginia Tech


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From: sbarlow-at-sciences.sdsu.edu
Date: Mon, 24 Jan 2011 14:03:02 -0600
Subject: [Microscopy] viaWWW: Uninterruptible power supply

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Email: sbarlow-at-sciences.sdsu.edu
Name: Steve Barlow

Organization: EM Facility/San Diego State U Biology

Title-Subject: [Filtered] Uninterruptible power supply

Message: I am looking for a ups system for my Quanta 450 FESEM. If
anyone has any experiences with various models, I would appreciate
hearing about it.

The needed characteristics are:
Rating= 8 kVA/6.4 kW
Input voltage= 172-285 Vac
Input frequency= 40-70 Hz
Output voltage= 230 Vac
Output frequency= 50/60 Hz

Thanks in advance. Vendors may contact me directly offline

Steve

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From: gabriel.lapointe2-at-gmail.com
Date: Mon, 24 Jan 2011 14:42:48 -0600
Subject: [Microscopy] Re: viaWWW: Uninterruptible power supply

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A good source of knowledge for these thing is your IT department.
Servers, especially those used in high power computing, tends to consume
a lot of current and tend to fail badly when the power is interrupted.

cheers,
logo



Gabriel Lapointe, M.Sc.
gabriel.lapointe2-at-gmail.com
http://gabriellapointe.ca




logo





On Mon, 2011-01-24 at 14:11 -0600, sbarlow-at-sciences.sdsu.edu wrote:

} Email: sbarlow-at-sciences.sdsu.edu
} Name: Steve Barlow
}
} Organization: EM Facility/San Diego State U Biology
}
} Title-Subject: [Filtered] Uninterruptible power supply
}
} Message: I am looking for a ups system for my Quanta 450 FESEM. If
} anyone has any experiences with various models, I would appreciate
} hearing about it.
}
} The needed characteristics are:
} Rating= 8 kVA/6.4 kW
} Input voltage= 172-285 Vac
} Input frequency= 40-70 Hz
} Output voltage= 230 Vac
} Output frequency= 50/60 Hz
}
} Thanks in advance. Vendors may contact me directly offline
}
} Steve
}
} Login Host: 146.244.234.42


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From: gul417-at-mail.usask.ca
Date: Mon, 24 Jan 2011 18:12:50 -0600
Subject: [Microscopy] viaWWW: Edwards S150B sputter coater part: insulator/cable

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Email: gul417-at-mail.usask.ca
Name: Guosheng Liu

Organization: University of Saskatchewan

Title-Subject: [Filtered] Edwards S150B sputter coater part: insulator/cable

Message: Hello,

The insulator cable in our aged Edwards S150B sputter coater broke
(so no HT) a few days ago. Does anyone have a clue on where can I
order this part (or a compatible part from other makes) or get a
service (I'm in Canada)?

Thanks in advance.

Guosheng

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From: ian.dobbie-at-bioch.ox.ac.uk
Date: Tue, 25 Jan 2011 07:26:32 -0600
Subject: [Microscopy] Recruiting correlative light/EM specialist, assistant facility manager and image analysis specialist.

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Hi,

We are recruiting a number of posts here in Oxford (UK), several of which
might be of particular interest to readers here. If you know anyone who
might be interested in these posts please do forward them this info. The
closing dates are all Feb 3rd.

Micron Oxford is funded by a major grant from the Wellcome Trust to the
Department of Biochemistry and the Sir William Dunn School of Pathology
in association with the Wellcome Trust Centre for Human Genetics and The
Oxford Center for Integrative Systems Biology. Its aim is to establish
state of the art light and electron microscopy facilities located in the
heart of the Oxford University research community with an emphasis on
technology development.

We are currently trying to recruit an Assistant Facility Manager, a
Correlative Light/Electron Microscopy Specialist and an Image Analysis
Specialist. Full details can be found on our website
http://www.micronoxford.com/

Additionally we are looking to appoint a Group Leader with expertise in
the development or application of advanced imaging techniques or the
modulation of protein function with a background in physics, chemistry
or biology. We are also looking to appoint at senior post-doctoral level
a system administrator specialising in the area of hierarchical data
storage development/management. Full particulars of each post can be
found at the Micron website (http://www.micronoxford.com/).

Thanks,

Ian
--
Ian Dobbie
Micron Imaging Facility Manager,
Biochemistry,
University of Oxford,
South Parks Road,
Oxford
OX1 3QU
Tel: +44 (0)1865 613323
Email: ian.dobbie-at-bioch.ox.ac.uk

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From: chaueter-at-bcm.edu
Date: Tue, 25 Jan 2011 11:20:03 -0600
Subject: [Microscopy] Reply on Post-embedding/sectioning FluoroNanogold labeling for TEM

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Email: vakimler-at-med.wayne.edu
Name: Vickie Kimler

Organization: Wayne State Univ. School of Medicine

Title-Subject: [Filtered] Post-embedding/sectioning FluoroNanogold Labeling for TEM

Message: Hello,
Some of our antigens are difficult to label in mammalian fat cells and muscles, such as particular lipid droplet proteins.
I have tried several methods of antigen unmasking and probe maintenance in post-sectioning fluoronanogold labeling,
including absence of uranyl acetate in the LR-White embedding medium, reduction of osmium post-fixation concentration to
reduce etching propensity of silver-enhanced gold probes, antigen unmasking with oxidizing (sodium
metaperiodate) and reducing (sodium borohydride) agents and Tris base pH 10.
I have reduced my glutaraldehyde concentration to 0.10% and maintained paraformaldehyde at 2%.

Pre-embedding fluoronanogold labeling appears to work with the absence of glutaraldehyde in the fixative, however the
ultrastructure is quite compromised, as one would expect by TEM.

I have been thinking now of using LR-Gold, until I hear from some experts on any other suggestions. Thank you very much!
Vickie


Hi Vickie,

I had a similar situation and had successfully used pre-embed labelling
with FluoroNanogold. I hope I can help.
In the post-section fluoronanogold labelling, there might not
be enough cross linking of your proteins to keep them stabilized especially
during the dehydration and embedding steps. Antigen unmasking
might not be the issue there but rather the proteins have been
extracted. From what I recall lipids rely on osmium
tetroxide and urany acetate fixation. Assuming you have
abundant amount of these proteins, if you have already tried
the gradual low temperature approach during dehydration and resin
infiltration steps and there is still no labelling, I would try
another approach.

You mentioned that pre-embed fluoronanogold labelling worked but
the ultrastructure quality was quite compromised. That sounds promising
when you get similar labelling pattern as in previous light microscopy data.
In this case, you might be able to fine tune the fixation step and
permeabilization if the latter was used. In my experience,
this approach worked better for the Flower, a synaptic vesicle protein
in the neuromuscular junction (NMJ) which we were working on.
We tried several fixation combinations but found that overnight
4% paraformaldehyde fixation achieved sufficient labelling. Although
ultrastructure quality was not the same as routine TEM, the organelles
were still recognizable. We were a bit lucky because the NMJs lie close
to the muscle surface and go only as deep as 5-8 microns into the tissue.
Also, we worked on fillet-dissected third instar Drosophila larvae
and did not need 50 micron thick vivatome sections.
Even so, we still needed permeabilization steps but not as drastic
as used in regular immunofluorescence. After trying different
detergents and conc, we added 0.01% Tween 20 in the blocking step. The nice thing about using
FluoroNanogold is we can examine the fluorescence labelling before proceeding to next steps.
In addition, you can post fix with 3% Glut and use lower concentration
of osmium tetroxide prior to dehydration and embedding so the
sample quality should be more enhanced.

I am not an expert in Immunocytochemistry like Drs Paul Webster and
Jan Leunissen and others out there but one thing I learned
as I was getting into this is that there is no single labelling approach.
Pre-embed method is not suitable for all samples but would likely work
on cell monolayers/suspensions, vivatome sections and samples where antigen is easily accessible.
We try to fit the best immuno-EM method to your samples which we all know
usually takes time. I hope you have plenty of time to optimize the
method for your samples.

I will send a pdf of the Flower paper so that you can check the
micrographs. A detailed pre-embed method with Fluoronanogold
is on the supplemental material.

Good luck,

Claire

------------------------------------------------------------
Claire M. Haueter
Res. Tech. II (Electron Microscopy)
Bellen Lab
HHMI-Baylor College of Medicine
Jan and Dan Duncan Neurological Research Institute
1250 Moursund St. Suite 1125
Mailstop NR-1125
Houston, TX 77030
Phone: 832-824-8772
Fax: 832-825-1240
Email: chaueter-at-bcm.edu
-------------------------------------------------------------

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From: Fengxia.Liang-at-med.nyu.edu
Date: Tue, 25 Jan 2011 12:41:58 -0600
Subject: [Microscopy] Research Scientist Position in the Cryo-Electron Microscopy

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The New York Structural Biology Center (NYSBC) seeks an experienced electron
microscopist to join the staff of its Cryo-Electron Microscope Facility
(http://cryoem.nysbc.org). The NYSBC is shared center that supports
state-of-the-art research in cryo-EM, NMR, and X-ray. Cryo-EM facilities
include four transmission electron microscopes and a new dual-beam scanning
electron microscope, which support projects involving electron tomography,
single particle analysis and electron crystallography of both stained and
frozen-hydrated samples. In general, projects focus on 3D reconstruction of
biological assemblies and examples range from the atomic structure of
membrane proteins, to the subunit organization in macromolecular complexes
and the cellular anatomy within the developing nematode. Implementation of
new technologies is an ongoing interest at NYSBC and, with the dual-beam
microscope, NYSBC plans to expand the scale of 3D reconstructions to
encompass the characterization of entire cells and their distributions
within their native tissue. To assist in these developments, NYSBC seeks a
individual with postdoctoral experience in biological electron microscopy
and image reconstruction. This individual will carry out experiments in
support of collaborative projects with affiliated investigators, including
EM sample preparation, data collection and image processing. Day-to-day
duties also include assisting a wide range of users from the NYSBC¹s ten
Member Institutions and setup and maintenance of microscopes. The individual
should be capable of multitasking and should enjoy working with other
people. Good communication skills are essential. Qualified applicants
should send a curriculum vitae and names of three references to David Stokes
(stokes-at-nysbc.org). Salary is commensurate with experience. The position is
currently open and applications will be reviewed continuously until the
position is filled.


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From: baskin-at-bio.umass.edu
Date: Tue, 25 Jan 2011 15:54:15 -0600
Subject: [Microscopy] Edwards Xenosput XE200 problem

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Microscopists,
I am posting this on behalf of my colleague Mike Jercinovic.
He is not a current subscriber so please be sure to cc him on any
reply. His email is: mjj-at-geo.umass.edu. Thanks! TB

We have recently acquired an old Edwards Xenosput XE200 magnetron
sputter coater. Does anyone have experience with these? It
certainly produces an amazing coat, but has a rather bothersome
problem. Often when we actuate the vacuum valve to start the initial
pump down, or sometimes when we close the valve, the display goes
haywire. The vacuum, head power, and head current readings all go
crazy. The vacuum valve is pretty aggressive, so the whole thing
gets a jolt when it opens or closes, so it seems like something might
just be loose somewhere. This behavior can (sometimes) go away when
switching the power off and on, or sometimes when cycling things a
few times, but as this is happening quite frequently, the coater is
almost unusable at this point. Today, it happened just when we
vented it to put samples in. We got a "parts" machine along with the
"working unit" (both obtained directly from Edwards), and I have now
replaced the switching relay, the display electronics, the control
electronics, and cables to the big board which has the terminal
blocks....no change in behavior. I have reset all the physical
interconnections I can find. Before launching in on further parts
swapping, I thought it would be worth an enquiry to the community.
Edwards no longer sells or supports this machine at all, so we are
basically on our own.

Thanks for any help. Mike Jercinovic. UMass Geosciences.

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From: gul417-at-mail.usask.ca
Date: Tue, 25 Jan 2011 20:14:33 -0600
Subject: [Microscopy] viaWWW: Edwards S150B sputter coater part: insulator/cable

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Email: gul417-at-mail.usask.ca
Name: Guosheng Liu

Organization: University of Saskatchewan

Title-Subject: [Filtered] Edwards S150B sputter coater part: insulator/cable

Message: Hi Steven,

Yes, the broken part is exactly as same as yours: at the bit on that
connects to the head terminal. More frustrating, I can tell that it
has broken at least 3 times from the record of usages--apparently a
design flaw.

I might try to sold them together according to suggestions from the
listers (I thank you all who replied to my email).

Best regards,

Guosheng Liu


-----------------------
Hi there;

I was in the exact same boat as you, except I have an S150A coater.
My HV cable broke (actually corroded and rotted away) right at the bit
on that connects to the sputter head terminal. I called Edwards and
spent a long time trying to even convince their service people that
they made this piece of equipment. I ended up having to fax them
copies of their own manual to show them the parts I was talking about.

Long story short: I never got anything from Edwards (useless). In the
end I crimped to the end of the cable an eye-lug terminal and we just
screw it onto the top of the sputter head now.

Best regards,
Steven Cogswell, P.Eng.
UNB Microscopy and Microanalysis

On Mon, Jan 24, 2011 at 8:15 PM, {gul417-at-mail.usask.ca} wrote:
} }
} }
} }
} }
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} } Email: gul417-at-mail.usask.ca
} } Name: Guosheng Liu
} }
} } Organization: University of Saskatchewan
} }
} } Title-Subject: [Filtered] Edwards S150B sputter coater part:
} insulator/cable
} }
} } Message: Hello,
} }
} } The insulator cable in our aged Edwards S150B sputter coater broke
} } (so no HT) a few days ago. Does anyone have a clue on where can I
} } order this part (or a compatible part from other makes) or get a
} } service (I'm in Canada)?
} }
} } Thanks in advance.
} }
} } Guosheng
} }


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From: Artur.irani-at-yahoo.com
Date: Wed, 26 Jan 2011 07:55:46 -0600
Subject: [Microscopy] viaWWW: Beam problem EPMA SX100

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Email: Artur.irani-at-yahoo.com
Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] Beam problem

Message: Hi
I am an EPMA SX100 Operator and it has a unknown problem during 2
weeks. when i choose HV(Kv) it getting on but HV is always became 0 ,
I checked the everywhere and changed Filament, also there is no
error. but how much I try and give Hv it never changed. please help
me in this situation.
Kazem

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From: protrain-at-emcourses.com
Date: Wed, 26 Jan 2011 08:57:52 -0600
Subject: [Microscopy] viaWWW: Beam problem EPMA SX100

Contents Retrieved from Microscopy Listserver Archives
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Hi

This does not look like a self fix task as it seems that you have a problem
with your high voltage system itself that is why it will not switch on. The
only other possible reason is that the safety device which prevents the HT
switching on under a poor vacuum could be at fault?

One question does the emission/beam current meter alter at all when you
switch on the HT? If it does it is not the safety device.

Steve

-----Original Message-----
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Sent: 26 January 2011 13:57
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Email: Artur.irani-at-yahoo.com
Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] Beam problem

Message: Hi
I am an EPMA SX100 Operator and it has a unknown problem during 2
weeks. when i choose HV(Kv) it getting on but HV is always became 0 ,
I checked the everywhere and changed Filament, also there is no
error. but how much I try and give Hv it never changed. please help
me in this situation.
Kazem

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From: DOrloff-at-ascb.org
Date: Wed, 26 Jan 2011 09:12:03 -0600
Subject: [Microscopy] The Cell: An Image Library - LinkedIn group

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


For those interested in cellular microscopy there is now The Cell: An Image Library - http://www.cellimagelibrary.org/

Also feel free to join The Cell LinkedIn Group - http://www.linkedin.com/groupRegistration?gid=3733425

David

David Orloff
Manager, Image Library
The American Society for Cell Biology
8120 Woodmont Avenue, Suite 750
Bethesda, MD 20814-2762
T: 301-347-9300/Direct: 301-347-9305
F: 301-347-9310
E-mail:  dorloff-at-ascb.org
Web site: www.ascb.org
The Cell: An Image LibraryT: www.cellimagelibrary.org
LinkedIn Group: http://www.linkedin.com/groupRegistration?gid=3733425




==============================Original Headers==============================
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From: benada-at-biomed.cas.cz
Date: Thu, 27 Jan 2011 04:37:19 -0600
Subject: [Microscopy] CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
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Hello,
We have another problem with our Philips CM100. Yesterday afternoon, the operating system of the
microscope crashed with strange OPCON screen (see the link bellow for image). No beeps, no
buttons were working with exception of the "OFF button". After restart, CM100 started in
“Default RAM init†mode.

Please, did anybody observed something similar? In our case it was for the first time.
Any responses are welcome.

Image of OPCON screen after crash:
http://www2.biomed.cas.cz/~benada/CM100_trouble.html

Best regards
Oldrich

--------------------------
Oldrich Benada
Institute of Microbiology, Acad. Sci. CR
Videnska 1083
142 20 Prague 4
Czech Republic


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From: hstahlberg-at-me.com
Date: Fri, 28 Jan 2011 04:36:31 -0600
Subject: [Microscopy] How close can a NMR machine be installed next to a TEM

Contents Retrieved from Microscopy Listserver Archives
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Hi,

How close can a high-end 300kV FEG TEM be installed next to an 800MHz 20-year old NMR machine? If both are on the same floor, then the magnetic field lines from the NMR should run through the TEM column vertically, so that the sensitivity for the strong DC fields of the NMR machine might be less ?

I would appreciate any experience or recommendations, also directly towards me.

Thanks,

Henning.

___________________________________________________

Henning Stahlberg, PhD.
Center for Cellular Imaging and Nano Analytics (C-CINA)
Prof. for Structural Biology
Biozentrum, University Basel
at the Department of Biosystems Science and Engineering (D-BSSE)
Mattenstrasse 26, WRO-1058
CH-4058 Basel, Switzerland
Tel: +41-61-387 32 62 (office)
Tel: +41-61-387 32 31 (Karen Bergmann, administrative assistant)
Fax: +41-61-387 39 86
mailto:Henning.Stahlberg-at-unibas.ch
Skype:henningstahlberg
http://c-cina.org
http://2dx.org

Postal Address for delivery of Letters / Goods / Express Carriers:
C-CINA, Biozentrum University of Basel
c/o Syngenta AG, WRO-1058.6.60, D-BSSE
Schwarzwaldallee 215
Postfach
CH-4002 Basel
___________________________________________________

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From: microscopy-at-microscopy.com
Date: Fri, 28 Jan 2011 06:50:18 -0600
Subject: [Microscopy] viaWWW:LM: Navitar Tube Lens for use with Infinity Corrected Objective

Contents Retrieved from Microscopy Listserver Archives
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Email: wxufocus-at-gmail.com Name: Jizhong

Title-Subject: [Filtered] LM: Navitar Tube Lens for use with Infinity
Corrected Objective

Message: Hi, I'm setting up an optical system with an infinity
corrected objective lens in a special tool I'm designing. I'm thinking
of using an adapter tube from Navitar to form the image for a CCD
camera. The Adapter Tube has a nice C-mount for attaching the CCD
camera. My question is: is the tube lens (to convert the parallel beams
into a real image) resides inside the Adapter Tube? Or I need the Ultra
Body Tube? Please see the sys diagram:
http://machinevision.navitar.com/pdfs/Precise_Eye_System_Diagram.pdf

Thanks,

Jizhong
Login Host: 121.235.16.17
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From: Samuel.Connell-at-STJUDE.ORG
Date: Fri, 28 Jan 2011 06:57:10 -0600
Subject: [Microscopy] Out of Office: viaWWW:LM: Navitar Tube Lens for use

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I am no longer the Director of Light Microscopy at St. Jude Children's Research Hospital. For questions regarding the use of the Cell and Tissue Imaging Center, please direct your inquiries to the team of Imaging Scientists in the CTIC, Jennifer Peters, Yannan Ouyang, and Jamshid Temirov. They may be reached as a group at the following email address: lightmicroscopy-at-stjude.org. The phone number in the CTIC is 901-595-3439.

Although no longer serving in my former capacity as the Director of Light Microscopy, I am currently available as a technical consultant to the Cell and Tissue Imaging Center. I may be reached directly as necessary at the following email address: samuel.connell-at-gmail.com

Kindest Regards,
--
Samuel Connell

________________________________
Email Disclaimer: www.stjude.org/emaildisclaimer


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From: Jeff.Wagner-at-cdph.ca.gov
Date: Fri, 28 Jan 2011 07:00:34 -0600
Subject: [Microscopy] Out of Office AutoReply: viaWWW:LM: Navitar Tube Lens for use with Infinity Corrected Objective

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I will be out of the office January 28. I will return on Monday January 31.
-Jeff



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From: Earnest.Truby-at-MyFWC.com
Date: Fri, 28 Jan 2011 07:02:10 -0600
Subject: [Microscopy] Out of Office: viaWWW:LM: Navitar Tube Lens for use

Contents Retrieved from Microscopy Listserver Archives
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I am currently out of the office on extended leave. For assistance, please contact Mary Arnold (Mary.Arnold-at-MyFWC.com) and she will direct your inquiry to the appropriate staff member.

Earnest Truby



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From: mirandan-at-mail.nih.gov
Date: Fri, 28 Jan 2011 07:03:30 -0600
Subject: [Microscopy] Out of Office: viaWWW:LM: Navitar Tube Lens for use

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Hello,

Thank you for your message. Please note that I will be out of the office for the rest of today, Thursday, January 27th. During this time I will have no access to voice mail or e-mail. I will respond to all messages accordingly upon my return to the office tomorrow Friday, January 28th.

If your matter is urgent and requires IMMEDIATE attention, please contact our main employment line at 301-846-5362 and the HR Assistant will be happy to connect you with the appropriate recruiter.

Please note that on occasion, the opening of Ft. Detrick may be delayed or closed due to inclement weather. For any weather related concerns and additional information about delays/closings, you may contact the Fort Detrick Weather Alert Hotline at 301-619-7611.

Thank you for your understanding. Make it a great day!

Regards,
Nelmarie Miranda, PHR
Senior Employment Specialist
SAIC-Frederick, Inc.


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From: snezana.haymes-at-us.army.mil
Date: Fri, 28 Jan 2011 07:05:43 -0600
Subject: [Microscopy] Out of Office: viaWWW:LM: Navitar Tube Lens for use

Contents Retrieved from Microscopy Listserver Archives
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I will be out of office from Tuesday, January 25 until Friday, January 28. I will be back in my office on Monday, January 31.



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From: mike.bode-at-resaltatech.com
Date: Fri, 28 Jan 2011 07:06:25 -0600
Subject: [Microscopy] Mike Bode is out of the office. Re: viaWWW:LM: Navitar Tube Lens for use with Infinity Corrected Objective

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Dear microscopy-at-microscopy.com,

I will be out of the office from 1/20/11 - 1/28/11, and will have only limited access to my email. I will respond to your email when I am back in the office. In urgent cases, please contact Jason Wickersham at Jason.Wickersham-at-resaltatech.com, or call (551)-804-1845.

Thank you for your understanding.

Mike Bode
ResAlta Research Technologies

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From: benada-at-biomed.cas.cz
Date: Fri, 28 Jan 2011 07:27:18 -0600
Subject: [Microscopy] Re: CM100 trouble - solved (hopefully)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello,
Many thanks for all advices and suggestions. The most likely it was a power spike that caused
the problem. Now, our CM100 is working again. Unfortunately, we have only DOS remote control
package for microscope setting backup and our old DOS PC does not boot any more. It took me half
a day to align and recalibrate the microscope manually after its RAM init. I'm thinking about
setup a virtual box with DOS and remote control package in near future.

I merged together all the replies and they are available on following link:
http://www2.biomed.cas.cz/~benada/CM100_trouble_r.html

Many thanks again Oldrich

} } Hello,
} } We have another problem with our Philips CM100. Yesterday afternoon, the
} } operating system of the microscope crashed with strange OPCON screen
} } (see the link bellow for image). No beeps, no buttons were working with
} } exception of the "OFF button". After restart, CM100 started in “Default
} } RAM init” mode.
} }
} } Please, did anybody observed something similar? In our case it was for
} } the first time. Any responses are welcome.
} }
} } Image of OPCON screen after crash:
} } http://www2.biomed.cas.cz/~benada/CM100_trouble.html
} }
} } Best regards
} }
} } Oldrich
} }
} } --------------------------
} } Oldrich Benada
} } Institute of Microbiology, Acad. Sci. CR
} } Videnska 1083
} } 142 20 Prague 4
} } Czech Republic


==============================Original Headers==============================
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From: zaluzec-at-aaem.amc.anl.gov
Date: Fri, 28 Jan 2011 07:34:49 -0600
Subject: [Microscopy] Administrivia: Email Loop Created - do not reply to any Out-of-Office Messages

Contents Retrieved from Microscopy Listserver Archives
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Colleagues

In trying to update some software I inadvertently created an email loop.
You all will see a number of out-of-the-office messages.

Do not reply to these and please excuse my error. Just ignore them
hopefully the loop will clear in a short while.


Nestor
Your Friendly Neighborhood SysOp... who also makes mistakes

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From: colijn.1-at-osu.edu
Date: Fri, 28 Jan 2011 07:46:43 -0600
Subject: [Microscopy] Re: How close can a NMR machine be installed next to a TEM

Contents Retrieved from Microscopy Listserver Archives
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Hi Henning,

I'm not sure of the distance, but you should be able to use a cheap
gaussmeter to measure the fields from the NMR. Even a DC field can
cause problems for a TEM, particularly a high-end FEG TEM. Anyone who
has worked with magnetic samples can attest to the problems they cause.

While there may be strong DC fields, NMRs work by flipping nuclear
magnetic moments which suggests there are AC or pulsed components to the
field.

You do not want this beast close to your TEM column.

Cheers,
Henk

At 1/28/2011 5:37 AM, hstahlberg-at-me.com wrote:
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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}
}
} Hi,
}
} How close can a high-end 300kV FEG TEM be installed next to an 800MHz 20-year old NMR machine? If both are on the same floor, then the magnetic field lines from the NMR should run through the TEM column vertically, so that the sensitivity for the strong DC fields of the NMR machine might be less ?
}
} I would appreciate any experience or recommendations, also directly towards me.
}
} Thanks,
}
} Henning.
}
} ___________________________________________________
}
} Henning Stahlberg, PhD.
} Center for Cellular Imaging and Nano Analytics (C-CINA)
} Prof. for Structural Biology
} Biozentrum, University Basel
} at the Department of Biosystems Science and Engineering (D-BSSE)
} Mattenstrasse 26, WRO-1058
} CH-4058 Basel, Switzerland
} Tel: +41-61-387 32 62 (office)
} Tel: +41-61-387 32 31 (Karen Bergmann, administrative assistant)
} Fax: +41-61-387 39 86
} mailto:Henning.Stahlberg-at-unibas.ch
} Skype:henningstahlberg
} http://c-cina.org
} http://2dx.org
}
} Postal Address for delivery of Letters / Goods / Express Carriers:
} C-CINA, Biozentrum University of Basel
} c/o Syngenta AG, WRO-1058.6.60, D-BSSE
} Schwarzwaldallee 215
} Postfach
} CH-4002 Basel
} ___________________________________________________
}
} ==============================Original Headers==============================
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} 10, 23 -- From: Henning Stahlberg {hstahlberg-at-me.com}
} 10, 23 -- Subject: How close can a NMR machine be installed next to a TEM
} 10, 23 -- Date: Fri, 28 Jan 2011 11:35:53 +0100
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}

--
Hendrik O. Colijn www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

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From: David.Patton-at-uwe.ac.uk
Date: Fri, 28 Jan 2011 09:26:18 -0600
Subject: [Microscopy] How close can a NMR machine be installed next to a TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We have a Philips CM10 TEM. Jeol checked for problems prior to installing a Jeol Eclipse 300MHz superconducting magnet instrument 13m and two rooms away. As far as we know there was no interference.

Dave

-----Original Message-----
X-from: hstahlberg-at-me.com [mailto:hstahlberg-at-me.com]
Sent: 28 January 2011 10:40
To: David Patton



Hi,

How close can a high-end 300kV FEG TEM be installed next to an 800MHz 20-year old NMR machine? If both are on the same floor, then the magnetic field lines from the NMR should run through the TEM column vertically, so that the sensitivity for the strong DC fields of the NMR machine might be less ?

I would appreciate any experience or recommendations, also directly towards me.

Thanks,

Henning.

___________________________________________________

Henning Stahlberg, PhD.
Center for Cellular Imaging and Nano Analytics (C-CINA)
Prof. for Structural Biology
Biozentrum, University Basel
at the Department of Biosystems Science and Engineering (D-BSSE)
Mattenstrasse 26, WRO-1058
CH-4058 Basel, Switzerland
Tel: +41-61-387 32 62 (office)
Tel: +41-61-387 32 31 (Karen Bergmann, administrative assistant)
Fax: +41-61-387 39 86
mailto:Henning.Stahlberg-at-unibas.ch
Skype:henningstahlberg
http://c-cina.org
http://2dx.org

Postal Address for delivery of Letters / Goods / Express Carriers:
C-CINA, Biozentrum University of Basel
c/o Syngenta AG, WRO-1058.6.60, D-BSSE
Schwarzwaldallee 215
Postfach
CH-4002 Basel
___________________________________________________

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From: raristau-at-ims.uconn.edu
Date: Fri, 28 Jan 2011 11:02:54 -0600
Subject: [Microscopy] Re: How close can a NMR machine be installed next to

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Part of our microscopy lab is next door to the NMR lab. The high
electro-magnetic fields (presumably from the high voltage lines feeding the
NMR) preclude installation of SEM or TEM in areas near the adjoining wall. A
distance of only a few meters is sufficient for the field strength to drop
to safe levels.

We have a similar problem with the HRTEM (located ~30 meters from the NMR
lab) in that a major high voltage conduit is located in the ceiling. As the
EMF will drop with the square of the distance, the ~2 meter separation from
conduit to TEM column is (just) sufficient to permit unimpeded operation.

The main point to take away from this is that any space MUST be checked for
fields and vibrations before installing any microscope. This should be
required by the TEM maker. There may be sources of EMF that are not obvious.

Cheers
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745


} From: {hstahlberg-at-me.com}
} Reply-To: {hstahlberg-at-me.com}
} Date: Fri, 28 Jan 2011 04:40:50 -0600
} To: {raristau-at-ims.uconn.edu}
} Subject: [Microscopy] How close can a NMR machine be installed next to a TEM
}
}
}
}
} ----------------------------------------------------------------------------
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} Hi,
}
} How close can a high-end 300kV FEG TEM be installed next to an 800MHz 20-year
} old NMR machine? If both are on the same floor, then the magnetic field lines
} from the NMR should run through the TEM column vertically, so that the
} sensitivity for the strong DC fields of the NMR machine might be less ?
}
} I would appreciate any experience or recommendations, also directly towards
} me.
}
} Thanks,
}
} Henning.
}
} ___________________________________________________
}
} Henning Stahlberg, PhD.
} Center for Cellular Imaging and Nano Analytics (C-CINA)
} Prof. for Structural Biology
} Biozentrum, University Basel
} at the Department of Biosystems Science and Engineering (D-BSSE)
} Mattenstrasse 26, WRO-1058
} CH-4058 Basel, Switzerland
} Tel: +41-61-387 32 62 (office)
} Tel: +41-61-387 32 31 (Karen Bergmann, administrative assistant)
} Fax: +41-61-387 39 86
} mailto:Henning.Stahlberg-at-unibas.ch
} Skype:henningstahlberg
} http://c-cina.org
} http://2dx.org
}
} Postal Address for delivery of Letters / Goods / Express Carriers:
} C-CINA, Biozentrum University of Basel
} c/o Syngenta AG, WRO-1058.6.60, D-BSSE
} Schwarzwaldallee 215
} Postfach
} CH-4002 Basel
} ___________________________________________________
}
} ==============================Original Headers==============================
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From: contact-at-excaliburpathology.com
Date: Fri, 28 Jan 2011 11:42:57 -0600
Subject: [Microscopy] Yahoo! Auto Response

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I will be out of the lab Jan. 22 to Jan 30, 2011.
In case of emergency, please call 405-759-3953 and someone will get in touch with me.

Thank you,

Paula Pierce

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From: jfmjfm-at-umich.edu
Date: Fri, 28 Jan 2011 12:25:29 -0600
Subject: [Microscopy] How close can a NMR machine be installed next to a

Contents Retrieved from Microscopy Listserver Archives
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I would be interested in a summary of the answers received on this.
We have a new instrument that may be installed within 200feet of an older model Varian MRI system, it is a superconductor, and the magnet is 4.7T. I do not believe that it is shielded the way the more modern MRIs are so I am curious what the field is out at 200ft from the instrument. I have the expressions for the fields from a solenoid at a distance, but I would rather have measurements than guesstimates, particularly when the kinds of static fields that we wish to avoid are probably in the milligauss or better regime.
I will probably find an instrument (MRI) is operational and plot the fields as a function of both distance and angle to the principal axis of the MRI.


--
John Mansfield PhD Cphys MInstP
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
Phone: (734) 936-3352 FAX (734) 763-2282
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(Leaving a phone message at 936-3352 is preferable to 834-3913)
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Home address:
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Please note: Electronic Mail is not secure, but should be read several times every day, and should definitely be used for urgent or sensitive issues.






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From: dmywong-at-ucdavis.edu
Date: Fri, 28 Jan 2011 14:36:10 -0600
Subject: [Microscopy] CLSM: Dying Triglyceride of microalgae

Contents Retrieved from Microscopy Listserver Archives
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I have a hard time getting the triglycerides to dye in 1 micron green
algae due to their thick cell wall. Any suggestions? I plan to view
this on a confocal laser scanning microscope.

Thanks!




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From: dmywong-at-ucdavis.edu
Date: Fri, 28 Jan 2011 14:41:44 -0600
Subject: [Microscopy] Confocal LSM: Quantification software? ImageJ

Contents Retrieved from Microscopy Listserver Archives
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I am trying to do quantification of my cells by measuring the diameter
of the fluorescence from a 3D construction image. I have heard of
ImageJ, but I am not sure what pluggins to install. Have you tried a
better program?
______________________________
Diana M. Wong
Graduate Student

Franz Group
University of California, Davis
Department of Chemistry
One Shields Ave
Davis, CA 95616
dmywong-at-ucdavis.edu
http://chemgroups.ucdavis.edu/~franz/





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From: michael.anderson-at-nist.gov
Date: Fri, 28 Jan 2011 15:13:10 -0600
Subject: [Microscopy] Confocal LSM: Quantification software? ImageJ

Contents Retrieved from Microscopy Listserver Archives
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Diana,

Rather than going with the a la carte method of installing plugins for ImageJ* you could try one of the prepackaged collections. MBF ImageJ is a good prepackaged selection of plugins (http://www.macbiophotonics.ca/imagej/) You could also try Fiji (http://pacific.mpi-cbg.de/wiki/index.php/Fiji).

Regards,

Mike

(*Comments made above represent personal opinion and do not represent formal endorsement of any particular product, company, or organization by NIST.)


-----Original Message-----
X-from: dmywong-at-ucdavis.edu [mailto:dmywong-at-ucdavis.edu]
Sent: Friday, January 28, 2011 3:58 PM
To: Anderson, Michael

I am trying to do quantification of my cells by measuring the diameter
of the fluorescence from a 3D construction image. I have heard of
ImageJ, but I am not sure what pluggins to install. Have you tried a
better program?
______________________________
Diana M. Wong
Graduate Student

Franz Group
University of California, Davis
Department of Chemistry
One Shields Ave
Davis, CA 95616
dmywong-at-ucdavis.edu
http://chemgroups.ucdavis.edu/~franz/





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From: zaluzec-at-aaem.amc.anl.gov
Date: Sat, 29 Jan 2011 09:53:54 -0600
Subject: [Microscopy] Administrivia: Testing today

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Colleagues

I'm doing some testing today. Please bear with the likely
of some test messages.

Nestor
===========================================
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Argonne National Laboratory
Electron Microscopy Center
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Senior Scientist - Argonne National Laboratory
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Senior Fellow of the Computational Institute - University of Chicago
E.P. Wigner Fellow - Oak Ridge National Laboratory
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 29 Jan 2011 14:24:35 -0600
Subject: [Microscopy] viaWWW:Re: How close can a NMR machine be installed next to

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Email: reynolds-at-vt.edu Name: Bill Reynolds

Organization: Virginia Tech

Title-Subject: [Microscopy] Re: How close can a NMR machine be installed
next to

Message: We have a FEG-STEM with a GIF that is located about 30 meters
away from an NMR lab. Our microscope operates to the microscope
manufacturer's resolution specs.
As others have noted, what causes problems for TEMs are magnetic fields
that change relatively quickly. These come from things like power lines,
large motors, and electromagnetic contacts or switches. Static fields
do not matter much at all because you can compensate for them (even when
the field is associated with a ferromagnetic sample in the microscope).
When our microscope was installed, the manufacturer measured the stray
magnetic fields (the alternating fields that are easy to detect), but I
don't think they even bothered measuring the static field. As an aside,
the natural static field at the earth's surface is small, but it is not
insignificant. Its magnitude varies from place to place, but it is in
the vicinity of half a Gauss. All microscopes essentially work in a 500
milli Gauss static background.

The large fields associated with NMR instruments are also static, so
they probably should not be considered equivalent to the "stray EMF
fields" discussed in various microscope installation specs. In our lab,
the magnet is a superconducting coil, and the weak fringes of the
magnetic field extends to our microscope. However, since the field
doesn't change (and we don't distort it by moving around large chunks of
iron), our microscope does not notice the presence of the NMR. If the
NMR magnet ever quenches or is turned off, we will probably be able to
see a very small change in the microscope alignment, but that kind of
event has not happened yet because the NMR magnet has been on
continuously for a couple years.

Just one opinion,
Bill Reynolds

Login Host: 198.82.166.169
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From: kjmorris-at-well.ox.ac.uk
Date: Sat, 29 Jan 2011 19:02:37 -0600
Subject: [Microscopy] RE: Confocal LSM: Quantification software? ImageJ

Contents Retrieved from Microscopy Listserver Archives
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Hi Diana,

I assume, rather than a simple chord on a 2D z slice, you want to measure
a line between two points on different Z planes in the 3D z stack. If so
also try and track down a recent version of the 3D software Volocity from
Perkin Elmer [formally Improvision], I am sure there will be a few
licences for the software about in one of the microscopy cores or research
groups at the university. Volocity is pretty hot at 3D quantification,
e.g. cellular component volumes etc.., and it shows them as pretty
pictures & videos. Although expensive to buy, Volocity works well, gives
good feedback on what it was measured, and has excellent email and
telephone support in the UK, and I expect the same is true in the US. You
will need to find a licenced user with at least the visualisation module,
and probably the quantitation module [i.e. drawing tools], particularly if
you want to take the image analysis further [these cost extra and not all
users will have all the modules].

http://www.cellularimaging.com/products/volocity
http://www.well.ox.ac.uk/_asset/file/volocity-manual.pdf [see line tool]
http://www.cellularimaging.com/lab_of_the_month/detail.php?id=12

I'm sure there will be other microscope software that other Californian
University groups may have that can do this as well, including ImageJ
[although I can't think of a 3D line distance measurements ImageJ app,
more volume rendering, but check the Fuji version], MetaMorph [also only
available via an optional 3D module] and Image-Pro Plus [3D rendering and
measurement].

If you find your XY pixel cordinates of the first and last point in the 3D
confocal z-stack and know your approx. optical slice thickness and number
of slices, I guess you could calculate/estimate the connecting line length
pretty easily [you'd convert everything to pixels and then back to um].
There'd be errors in the length measurement, e.g. owing to perhaps 10 to
25% reduction in size due to fixation, possible distortion effects and
estimation of Z optical distances.

e.g. calculate using
http://www.analyzemath.com/Geometry_calculators/distance_midpoint_3D.html

Also see: Microscopy Image Analysis and Processing Software links at:
http://www.well.ox.ac.uk/external-website-links

Regards

Keith

No commercial interest

-------------------------------------------------

Dr Keith J Morris
Molecular Cytogenetics and Microscopy Core
The Wellcome Trust Centre for Human Genetics
Roosevelt Drive
Oxford
OX3 7BN
United Kingdom

Tel: +44 ( 0 ) 1865 287568
Email: kjmorris-at-well.ox.ac.uk
HomePage: http://www.well.ox.ac.uk/molecular-cytogenetics-and-microscopy

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} Diana,
}
} Rather than going with the a la carte method of installing plugins for
ImageJ* you could try one of the prepackaged collections. MBF ImageJ is
a
} good prepackaged selection of plugins
} (http://www.macbiophotonics.ca/imagej/) You could also try Fiji
(http://pacific.mpi-cbg.de/wiki/index.php/Fiji).
}
} Regards,
}
} Mike
}
} (*Comments made above represent personal opinion and do not represent
formal endorsement of any particular product, company, or organization
by
} NIST.)
}
}
} -----Original Message-----
} X-from: dmywong-at-ucdavis.edu [mailto:dmywong-at-ucdavis.edu]
} Sent: Friday, January 28, 2011 3:58 PM
} To: Anderson, Michael
} Subject: [Microscopy] Confocal LSM: Quantification software? ImageJ
}
}
}
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}
} I am trying to do quantification of my cells by measuring the diameter
of the fluorescence from a 3D construction image. I have heard of
ImageJ, but I am not sure what pluggins to install. Have you tried a
better program?
} ______________________________
} Diana M. Wong
} Graduate Student
}
} Franz Group
} University of California, Davis
} Department of Chemistry
} One Shields Ave
} Davis, CA 95616
} dmywong-at-ucdavis.edu
} http://chemgroups.ucdavis.edu/~franz/
}
}
}
}
}
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} Headers==============================
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From: Michael.Cammer-at-med.nyu.edu
Date: Sun, 30 Jan 2011 19:25:32 -0600
Subject: [Microscopy] how to induce apoptosis for in vitro microscopy?

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Dear microscopists,
I have been asked to reproduce an apoptosis assay whereby cells in a dish cells are exposed to UVB light and then screened 8 to 36 hours later.
Does anybody have experience with this who could give us some tips?
May we use UVA, as in the UV lamp on the microscope, or do you have suggestions what type of lab might have a UVB lamp available?
Thank you.
Sincerely,
Michael


_________________________________________
Michael Cammer, Assistant Research Scientist
Skirball Institute of Biomolecular Medicine
Lab: (212) 263-3208 Cell: (914) 309-3270

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From: Stefan.Heinemann-at-fei.com
Date: Mon, 31 Jan 2011 19:43:48 -0600
Subject: [Microscopy] Automatic reply: viaWWW:LM: Navitar Tube Lens for use

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I am out of the office till the 18. of July.


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From: stefan.diller-at-t-online.de
Date: Tue, 1 Feb 2011 06:20:07 -0600
Subject: [Microscopy] SEM prep of lichen from a herbarium

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Dear All,
I would like to do some work on lichen. Now I got access to a huge herbarium collection of lichen.
What it do any good to use these room-dried specimen, moisture them, fix and go through ethanol to critcal point drying?
Any experience with this out there?

Best wishes,
Stefan

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Anfahrt: http://Mail.map24.com/Stefan.Diller
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 1 Feb 2011 08:41:26 -0600
Subject: [Microscopy] viaWWW:EMAG2011 - Abstract Submission Open

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Email: ian.maclaren-at-glasgow.ac.uk Name: Ian MacLaren

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Title-Subject: [Filtered] EMAG2011 - Abstract Submission Open

Message: EMAG2011 - Quantifying the Nanoworld
September 6-9 2011
University of Birmingham, UK

Call for abstracts

The biennial EMAG conference will this year be held at the University of
Birmingham and promises to be an excellent meeting. Highlights of the
programme will include plenary talks from Dr Frances Ross, Prof. Knut
Urban and Prof. Richard Henderson, together with an exciting range of
invited talks giving a snapshot of many current directions in electron
microscopy and its applications. There will also be plenty of
opportunity at this meeting to present papers orally or as posters, and
research students are especially encouraged to present their work at
this meeting. Scientific sessions are expected to include:

* Nanofabrication and scanning electron microscopy
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Abstract submission is now open via the conference website at:

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and the closing date for abstract submission is 2 March 2011. Further
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 1 Feb 2011 08:42:59 -0600
Subject: [Microscopy] viaWWW:Postdoctoral Research Position Youngstown State University

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Email: vcsolomon-at-ysu.edu Name: Virgil C. Solomon

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More information available at http://www.ysu.edu/hr/positions.shtml

Interested candidates can apply by email or by sending a cover letter,
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 1 Feb 2011 09:13:38 -0600
Subject: [Microscopy] viaWWW:Cryostat Knife Holder Assembly Needed

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Stefan

it's not my particular area of expertise but I do recall that some of
our researchers used to "revitalise" their dried lichen samples by
simply putting them on a damp filter paper in a petri-dish. If you
think about it, this is probably what happens in nature (except for
the filter paper etc).

I seem to recall that this process worked with most specimens but
depended on the original drying, storage and presumably the resilience
of the fungi and algae symbionts.

Good luck

Malcolm

Malcolm Haswell
Imaging Suite
Faculty of Applied Sciences
University of Sunderland
SUNDERLAND
SR1 3SD
UK
email: malcolm.haswell-at-sunderland.ac.uk

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Title-Subject: [Filtered] Cryostat Knife Holder Assembly Needed

Message: We recently acquired a vintage Reichert- Jung, Cryocut 1800.
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 1 Feb 2011 09:15:23 -0600
Subject: [Microscopy] viaWWW:Type K(?) insert for Zeiss

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Email: michael.cammer-at-med.nyu.edu Name: Michael Cammer

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Title-Subject: [Filtered] Type K(?) insert question

Message: We want to built a custom type K (?), 110 X 160 mm with
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us to insert another stage insert approximately 2 cm higher than the
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for a machine shop?

Or does anyone know if such a stage height extender already exists?

Thank you very much.

Sincerely,

Michael

________________________________________________________
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From: eschumacher-at-mccrone.com
Date: Tue, 1 Feb 2011 09:42:05 -0600
Subject: [Microscopy] Short Course Announcement: SEM and TEM

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Greetings Fellow Microscopists,

The Hooke College of Applied Sciences, located in Westmont, IL, is offering the following electron microscopy short courses:

March 7 to 11- Scanning Electron Microscopy

March 15 to 17 - Transmission Electron Microscopy

In addition to lectures, these courses emphasize hands-on training using state of the art equipment. For further details and registration information, please follow the link below:

http://www.hookecollege.com/


Regards,

Elaine

*********************************************************************
Elaine F.Schumacher
Senior Research Scientist
McCrone Associates, Inc.
850 Pasquinelli Drive
Westmont, IL 60559-5539 USA
630-887-7100 (tel)
630-887-7417 (fax)
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From: baskin-at-bio.umass.edu
Date: Tue, 1 Feb 2011 09:50:13 -0600
Subject: [Microscopy] Re:SEM prep of lichen from a herbarium

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Dear Stefan,
I have no specific experience with lichen but I suspect that
whatever structural damage occurred by air drying cannot be repaired
by rehydration. I bet you can take small sample of the herbarium
specimen and put it on a stub and examine directly. I think you can
test it first in a vacuum chamber (for example of a good coater) and
see if it outgasses much. Probably it won't. Insofar as lichens air
dry in nature and plant and fungal cell walls are tough, it is
reasonable to examine air dried material in lieu of fresh samples.

Clearly if as Malcolm Haswell suggests the herbarium specimen
is still living, then that gives you the chance to work with fresh
material. But I wonder what the odds of that are?

As ever
Tobias Baskin

}
}
} Dear All,
} I would like to do some work on lichen. Now I got access to a huge
} herbarium collection of lichen.
} What it do any good to use these room-dried specimen, moisture them,
} fix and go through ethanol to critcal point drying?
} Any experience with this out there?
}
} Best wishes,
} Stefan
}
} --
} -----------------------------------------------------
} Stefan Diller - Scientific Photography
} Arndtstrasse 22
} D - 97072 Wuerzburg Germany
} ++49-931-7848700 Phone
} ++49-931-7848701 Fax
} ++49-175-7177051 Mobile
}
} Websites:
} www.stefan-diller.com
} www.elektronenmikroskopie.info
} www.assisi.de
} www.zwillingsprojekt.de
} Anfahrt: //Mail.map24.com/Stefan.Diller
} -----------------------------------------------------
}
} =

--
_ ____ __ ____
/ \ / / \ / \ \ Tobias I. Baskin
/ / / / \ \ \ Biology Department
/_ / __ /__ \ \ \__ 611 N. Pleasant St.
/ / / \ \ \ University of Massachusetts
/ / / \ \ \ Amherst, MA, 01003
/ / ___ / \ \__/ \ ____
www.bio.umass.edu/biology/baskin
Voice: 413 - 545 - 1533 Fax: 413 - 545 - 3243

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From: FMonson-at-wcupa.edu
Date: Tue, 1 Feb 2011 09:53:31 -0600
Subject: [Microscopy] SEM prep of lichen from a herbarium

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Morning Stephan,

We often neglect to consider that when something has already been dried 'naturally' there may be no reason the redo the process 'un-naturally'. Especially in the cases of organisms that can survive dehydration by re-animating when re-hydrated. There is a roundworm in S. America that survives complete dessication in the dried mud - waiting for reanimation in the next rainy season. (Could NOT quickly find a reference, but I first saw this in a text - when I was young - in the early 1960's.)

This is especially true, if you have a variable pressure SEM (ESEM) at hand.

Further, after critical point drying, we also fail to recognize that the 'almost completely dry' natural material has been remade into a quite hygroscopic material that will rehydrate while we carry it to the microscope or coater (evacuate (shrinkage) and coat, then re-pressurize, hydrate and stretch!). All of this was invented to permit us to view free-standing microvilli as well as other delicate cell surface features.

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: stefan.diller-at-t-online.de [mailto:stefan.diller-at-t-online.de]
Sent: Tuesday, February 01, 2011 7:32 AM
To: Monson, Frederick

Dear All,
I would like to do some work on lichen. Now I got access to a huge herbarium collection of lichen.
What it do any good to use these room-dried specimen, moisture them, fix and go through ethanol to critcal point drying?
Any experience with this out there?

Best wishes,
Stefan

--
-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

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From: beth-at-plantbio.uga.edu
Date: Tue, 1 Feb 2011 13:55:21 -0600
Subject: [Microscopy] fixing mouse cornea

Contents Retrieved from Microscopy Listserver Archives
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Hi all,
Does anyone have a favorite TEM protocol for fixing mouse cornea that
they'd be willing to share? The tissue we have is infected with a
fungus so we'd like to have good preservation of both.
TIA and my best,
Beth

Beth Richardson
EM Lab Coordinator
Plant Biology Dept.
University of Georgia
Athens, GA 30602




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From: tina-at-pbrc.hawaii.edu
Date: Tue, 1 Feb 2011 15:06:27 -0600
Subject: [Microscopy] Need a chapter on EM for a book

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, All-

The editor of a forthcoming Wiley-Blackwell book on Biofouling Methods is
looking for someone to write a chapter on electron microscopy methods.
This is expected to be a brief literature review, with an introduction
about methods and some actual protocols, designed for beginners in the
field. If you are interested, please contact Sergey Dobretsov at
sergey_dobretsov-at-yahoo.com

Aloha from sunny and warm Hawaii (had to rub it in),
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: rosemary.white-at-csiro.au
Date: Tue, 1 Feb 2011 15:34:53 -0600
Subject: [Microscopy] Re: SEM prep of lichen from a herbarium

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

As suggested already, if you have access to a VP-SEM, all you need to do is
put a piece on a stub and image. And sometimes BSE is better than SE, or a
combination of the two can work well. And in a VP-SEM, you don't need to
worry about outgassing so much.

After that, you could try looking at a hydrated specimen in VP mode, with
water as the gas, if your SEM has that capacity.

The entomologists across the road are big fans of the VP-SEM, because it
means they can now look at details of their precious type specimens,
especially the very tiny ones, none of which are allowed to be coated with
anything.

cheers,
Rosemary


Dr Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
E rosemary.white-at-csiro.au

On 1/02/11 11:29 PM, "stefan.diller-at-t-online.de" {stefan.diller-at-t-online.de}
wrote:

}
}
}
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} Dear All,
} I would like to do some work on lichen. Now I got access to a huge herbarium
} collection of lichen.
} What it do any good to use these room-dried specimen, moisture them, fix and
} go through ethanol to critcal point drying?
} Any experience with this out there?
}
} Best wishes,
} Stefan



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From: naomi_mccallum-at-health.qld.gov.au
Date: Tue, 1 Feb 2011 21:00:53 -0600
Subject: [Microscopy] KOS EM (Milestone) Microwave Tissue Processor

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All

We have been offered a demonstration in our laboratory of the Milestone "KOS EM" tissue processor. Has anyone encountered this product before? Perhaps some of you have had experience with other Microwave tissue processors that you may wish to share.

Thanks in advance
Naomi

Naomi McCallum
Supervising Scientist, EM Unit, Anatomical Pathology
Pathology Queensland
_________________________________________________
Clinical and Statewide Services Division| Queensland Health

Block 7 Level 2
RBWH Queensland 4029
Ph: 07 3636 8057
Mob:
Fax: 07 3636 8908
Email: naomi_mccallum-at-health.qld.gov.au
Web: http://www.health.qld.gov.au/qhcss/qhps



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From: donc-at-asmicro.com
Date: Tue, 1 Feb 2011 21:16:05 -0600
Subject: [Microscopy] Re: [a] STM tip advice. - Commercial reply

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Justin,
We can supply small quantities of Pt-Ir STM tips at a price much lower than
"$200 per tip". The tips we have were manufactured at Digital Instruments
for use with their STM. Please contact me offline and share details of the
wire size requirements of the Easyscan stm.

regards,
Don
=============================================
Don Chernoff, Ph.D., President
Advanced Surface Microscopy, Inc. E-Mail: donc-at-asmicro.com
3250 N. Post Rd., Ste. 120 Voice: 317-895-5630
INDIANAPOLIS IN 46226 USA Toll free: 800-374-8557 (in USA & Canada)
web: http://www.asmicro.com Fax: 317-895-5652
[business activities: analytical services in AFM, AFM probes, consulting,
training,
calibration and test specimens, calibration and measurement software,
used NanoScope equipment.] 2009-2010 is our 20th year in business!
=============================================
----- Original Message -----
From: kraftpiano-at-gmail.com
To: donc-at-asmicro.com
Sent: Friday, January 21, 2011 12:10 AM
Subject: [a] [Microscopy] STM tip advice.





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I know that I usually talk about SEM applications, but recently I have
been given the task of setting up and playing with a scanning tunneling
microscope. We have a small length of platinum/iridium wire, and the
instructions tell us to take a pair of cutters and gently squeeze and pull
the wire to make an atomic scale tip. So far, we have been unsuccessful at
producing a tip that functions properly in the machine (It's a Easyscan
Nanosurf).

I found some documentation online about etching tungsten tips in KOH, so I
sacrificed an SEM filament and tried it- at first it looked good, but the
tip still ended up etched entirely flat at the surface of the KOH solution.

The purpose of my playing with this is to try to develop a set of
instructions that anyone (Physics undergrads- most of whom are theorists and
think less of us experimentalists) can use to get this up and running for
one of our lab courses.

Does anyone have any suggestions? Since this is a lab course, there is no
budget to be spending $200 per tip on tips that will just end up smashed
into the surface of a specimen anyway.

Thanks,

Justin A. Kraft

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15, 37 -- Subject: Re: [a] [Microscopy] STM tip advice. - Commercial reply
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From: terry.cooper-at-btinternet.com
Date: Wed, 2 Feb 2011 05:39:05 -0600
Subject: [Microscopy] Ultramicrotome history

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers

Sorry for the delay in response to this topic, but due to an error on my on
my part my previous communication went astray. For those who may be
interested in the history of ultramicrotomy I do have a copy of an article
in PDF form which traces the development of the ultramicrotome from "wedge"
sections in the late thirties where the thin end of the wedge was
(hopefully) transparent to electrons, through the high speed era (actually
up to 57000 rpm), overcoming embedding limitations and finally discussing
the first generation of commercial instruments.

Please contact me on terry.cooper-at-btinternet.com and I can attach the
missive,

Best regards

Terry Cooper
TAAB Laboratories Equipment
3 Minerva House, Calleva Park
Aldermaston, Berks, RG7 8NA, England
Tel ++44(0)118 981 7775
Fax ++44(0)118 981 7881
e-mail sales-at-taab.co.uk
www.taab.co.uk


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 2 Feb 2011 07:55:51 -0600
Subject: [Microscopy] viaWWW:SEM sample storing

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Email: wadowska-at-upei.ca Name: Dorota Wadowska

Organization: Atlantic Veterinary College at UPEI

Title-Subject: [Filtered] SEM sample storing

Message: Hello all,
One of our EM lab users asked me a question: what is the best way to
store SEM samples? I know you'll all say that the best is to process and
coat first. He wants to store them in 2% glutaraldehyde and process
later since he does not have time at the moment. What is your
experience? I am not an expert in SEM.
Thank you Dorota
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From: waynezhao.microscopy-at-gmail.com
Date: Wed, 2 Feb 2011 08:50:25 -0600
Subject: [Microscopy] PFA Engineer & Technicians openings at Global Foundries

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Dorota
To my experience specimens can stay in glutar for an indefinite time. I have
processed samples after } 3 years stored in glutar inside the fridge, and
they looked same as others being processed within a few days. In rare cases
I've seen mushrooms developing in samples that stayed only a few weeks in
glutar. There I suspect glutar was old, samples were dirty from the
beginning, or some other unedintified factor was present. If you process and
coat the specimens I think it is better to view them soon, otherwise can get
humidified and morphology deteriorates.
In conclusion I think it is not a bad idea to have your samples staying in
glutar until you have the time to view them.
With best wishes
yorgos

Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
eikonika-at-otenet.gr
www.aim.cat
***********************************



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Dear Colleagues,

Openings for Engineers & Technicians in Physical Failure Analysis (PFA) are
available in Global Foundries, R&D Center at East Fishkill, NY.

Engineers should be strong in FIB & SEM / basic TEM & device physics.
Industry experience with device / wafer-fab helpful.

Technicians should have extensive hands-on skills in various TEM sample-prep
techniques, e.g., delayering / mechanical polishing / FIB / CLM, etc.
Previous experience at high-throughput environments preferred, but not
a requirement.

Applicants should demonstrate unrestricted employment eligibility in USA,
which usually requires US citizenship or green card.

If interested, please send a cover letter and resume, "offline", to
wayne.zhao-at-globalfoundries.com .

Wayne

-------------------------------------------
Wayne Zhao, PhD
Technical Lead of PFA Team
Sr. Member of Technical Staff
R & D Center at East Fishkill, NY
Global Foundries
-------------------------------------------

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 2 Feb 2011 08:59:53 -0600
Subject: [Microscopy] viaWWW:HMDS, How does it work...

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Email: bbandli-at-d.umn.edu Name: Bryan Bandli

Organization: University of Minnesota, Duluth

Title-Subject: [Filtered] HMDS, How does it work...

Message: Hi All,

I'm looking for a reference to explain just how/why HMDS works to dry
specimens for SEM observation. There are plenty of references showing
that it does, in fact, work and produces good results in many cases but
I have yet to find an explanation as to the "why".
Is it that HMDS has the right physical properties (surface tension) to
evaporate without causing drying artifacts?

Or, is there something about the silanization of the sample that helps
make it more robust, or both, or am I completely lost (quite likely)?

Thanks in advance for your input!

Cheers,

Bryan Bandli
University of MN, Duluth

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From: kenconverse-at-qualityimages.biz
Date: Wed, 2 Feb 2011 09:29:21 -0600
Subject: [Microscopy] viaWWW:HMDS, How does it work...

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Bryan,
I believe it has to do with very low surface tension. It also doesn't work
well across the board. I understand that it works well with insects, but
one of my sons did a science fair project comparing dried, freeze dried and
HMDS treated green pepper. In his case the HMDS didn't appear to be any
better than drying. His best results were from plunging small pieces into
acetone cooled with a Peltier cooler, then transferring to another Peltier
cooler in a vacuum evaporator until dehydrated. He was not able to compare
it to CPD prep as we didn't have the requisite CO2. Obviously, the plunge
freezing was not done at typical temperatures, so there was probably ice
damage in those samples, but they looked the best of the bunch.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
Fax 207-647-2688
kenconverse-at-qualityimages.biz
qualityimages.biz


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Sent: Wednesday, February 02, 2011 10:02 AM
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Email: bbandli-at-d.umn.edu Name: Bryan Bandli

Organization: University of Minnesota, Duluth

Title-Subject: [Filtered] HMDS, How does it work...

Message: Hi All,

I'm looking for a reference to explain just how/why HMDS works to dry
specimens for SEM observation. There are plenty of references showing
that it does, in fact, work and produces good results in many cases but
I have yet to find an explanation as to the "why".
Is it that HMDS has the right physical properties (surface tension) to
evaporate without causing drying artifacts?

Or, is there something about the silanization of the sample that helps
make it more robust, or both, or am I completely lost (quite likely)?

Thanks in advance for your input!

Cheers,

Bryan Bandli
University of MN, Duluth

Login Host: 131.212.37.204
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From: dsherman-at-purdue.edu
Date: Wed, 2 Feb 2011 10:37:12 -0600
Subject: [Microscopy] Re: Ultramicrotome history

Contents Retrieved from Microscopy Listserver Archives
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Although I have HMDS and have used it, I'm no expert.

That said,

given the following pieces, I'd say the lower surface tension allows better
permeation and the evaporation rate is near sublimatic in process because of
both the lower surface tension and higher vapor pressure [the lower surface
tension maximizes the area and the thinness of the film, both of which
increase evaporation flux]:

1. Bray, Comparison of Hexamethyldisilazane (HMDS), Peldri 11, and
Critical-Point Drying Methods for SEM of Biological Specimens, Microsc Res
Tech, 26, 489-495, 1993.

"Recently, several drying methods which claim to alleviate
some of the disadvantages of CPD have been
described. One of these methods (Kennedy et al., 1989)
is similar to freeze drying and utilizes a sublimation
dehydrant, Peldri 11, which is frozen and then sublimed
from specimens. The Peldri 11 procedure requires no
special equipment but can take several hours to perform
a run. Other methods involve the use of low-surface-
tension solvents such as Hexamethyldisilazane
(HMDS) (Nation, 1983), tetramethylsilane (TMS) (Dey
et al., 19891, and dimethoxypropane (DMP) (Weyda,
1992). These solvents evaporate directly from tissue in
minutes, and infiltration times usually take { 1 hr."

2. Beno, Processing of soft pupae and uneclosed pharate adults of
Drosophila for scanning electron microscopy, Microsc Res Tech, 70,
1022-1027, 2007

"We found that it is crucial to leave minute amount of above
used solvents (ethanols, acetone, and mixture of acetone:
hexamethyldisilazane) in eppendorf tube prior to each
exchange to prevent animal from fast drying and damage."



Tony

......................................................................
Andrew Anthony "Tony" Havics, CHMM, CIH, PE
pH2, LLC 5250 E US 36, Suite 830 Avon IN 46123
www.ph2llc.com
(317) 718-7020 off
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-----Original Message-----
X-from: microscopylistserver-noreply-at-microscopy.com
[mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Wednesday, February 02, 2011 10:04 AM
To: ph2-at-sprynet.com

Fascinating article. Some of my recollections (possibly with some
inaccuracies but the best I can recollect) involve Fernandez-Moran who is
credited with developing the first diamond knives for use with
ultra-microtomes as well as a cryo ultra-microtome and a number of other
interesting developments.

I worked for Fernandez-Moran at the U. of Chicago for a few years starting
in 1963. This was after he was forced to leave Venezuela and then did a
short stay at MIT before being recruited by U. of C. He had a microtome,
presumably of his design, that only he used on rare occasion. Almost all
the imaging done in the lab was with negatively stained samples.

He, of course, had his diamond knives. The technique to make them was
perfected at the lab for neurological research that he built in Venezuela.
(He was forced to leave Venezuela when the government was taken over by a
military coup and he was on the wrong side, but that's another story.) He
had a workshop there with his diamond cutters, etc. After developing the
knives, he sent them out to the leading investigators of the day to get them
to try them so that they would then buy them. Dupont picked up on the idea
and also began making them for sale. Moran had patented the process so was
able to sue Dupont and did win. I believe he later agreed to give them
rights to make and market the knives.

Moran's lab at Chicago was quite a place. It was a semi-clean room lab in
the basement of the Research Institute. The floors were raised so that all
the water and vacuum lines for the microscopes were underneath with
mechanical pumps and water recirculators a long ways away from the
microscopes. He had 3 Seimens 1 and 1A TEMS on vibration mounts with the
raised floor cut around the microscope bases so that moving a chair would
not affect the TEM stability. A motor generator located in the attic of the
building provided stable power. I started out as a technician and we all
wore white nylon lab coats, white rubber shoes that we washed weekly, and
little white hats. Visitors suited up in lab coats with plastic bags over
their shoes. Pre-pumps to evacuate the film cameras were located two floors
up. We would put on our red goggles to retain our dark adaptation, put
plastic bags over our plastic shoes, and shuffle up to get new film
cameras...looked like Martians!

It was an interesting time. There was also a couple of Japanese scientists
working on an early Hitachi microscope trying to set resolution records.
They would literally disassemble the microscope after just a few tries to
clean it and get ready for the next attempts. They were the only ones with
the patience to deal with that microscope. Later Perk and Elmer Company
came along and helped with design changes to make it more user-friendly and
thus more marketable.

Pointed filaments were also made in the lab. E.F. Fullam came one time to
see how they were made and then was able to start selling them commercially.

Moran built a helium-cooled microscope to improve resolution using
superconducting lenses. I do not know if it was originally his idea or if he
"borrowed" someone else's idea. However, they built a liquid helium
recirculator system, again with most of it in the attic 4 stories up. The
helium flowed through a special jacket on the microscope that encased the
entire upper part of the column through the objective lens. They managed to
get a few images but then Moran lost interest. A series of health problems
shortly thereafter led to closing down the lab and and end to a very
interesting few years. Louie Ouwerkerk was a Dutch engineer who, along with
the great U. of Chicago Instrument shop, designed and built a lot of Moran's
ideas.

Debby

P.S. I have time to write this as the university is closed due to a major
snow storm that hit us over the last 24 hours. Looks very pretty out there
but....

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy




On 2/2/11 6:43 AM, "terry.cooper-at-btinternet.com"
{terry.cooper-at-btinternet.com} wrote:

}
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} Dear Listers
}
} Sorry for the delay in response to this topic, but due to an error on my on
} my part my previous communication went astray. For those who may be
} interested in the history of ultramicrotomy I do have a copy of an article
} in PDF form which traces the development of the ultramicrotome from "wedge"
} sections in the late thirties where the thin end of the wedge was
} (hopefully) transparent to electrons, through the high speed era (actually
} up to 57000 rpm), overcoming embedding limitations and finally discussing
} the first generation of commercial instruments.
}
} Please contact me on terry.cooper-at-btinternet.com and I can attach the
} missive,
}
} Best regards
}
} Terry Cooper
} TAAB Laboratories Equipment
} 3 Minerva House, Calleva Park
} Aldermaston, Berks, RG7 8NA, England
} Tel ++44(0)118 981 7775
} Fax ++44(0)118 981 7881
} e-mail sales-at-taab.co.uk
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==============================Original Headers==============================
17, 31 -- From dsherman-at-purdue.edu Wed Feb 2 10:37:11 2011
17, 31 -- Received: from mailhub131.itcs.purdue.edu (mailhub131.itcs.purdue.edu [128.210.5.131])
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17, 31 -- From: "Sherman, Debra M" {dsherman-at-purdue.edu}
17, 31 -- To: "terry.cooper-at-btinternet.com" {terry.cooper-at-btinternet.com} ,
17, 31 -- "message to:
17, 31 -- MSA list" {microscopy-at-microscopy.com}
17, 31 -- Date: Wed, 2 Feb 2011 11:37:05 -0500
17, 31 -- Subject: Re: [Microscopy] Ultramicrotome history
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From: steven.samuelsson-at-sri.com
Date: Wed, 2 Feb 2011 11:16:37 -0600
Subject: [Microscopy] Cryostat Knife Holder Needed

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Listserve:

We recently acquired a vintage Reichert- Jung, Cryocut 1800.
Unfortunately, it is missing much of the knife holder assemble. Does
anyone on the list have these parts and are willing to sell or surplus
them? The unit is in good condition and should serve us well.

Thanks so much.

Steve

--
Steven Samuelsson, PhD
Director
Cell and Molecular Imaging Facility
100-51
SRI International, Inc.
333 Ravenswood Ave
Menlo Park, CA 94061
(650) 859-2980


==============================Original Headers==============================
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6, 18 -- Subject: Cryostat Knife Holder Needed
==============================End of - Headers==============================




From: NEERAJG-at-clemson.edu
Date: Wed, 2 Feb 2011 13:27:10 -0600
Subject: [Microscopy] Re: Ultramicrotome history

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Great Story Debby, Thanks for sharing it with the list.

Stay Warm!

Best,

Neeraj.



-----Original Message-----
X-from: dsherman-at-purdue.edu [mailto:dsherman-at-purdue.edu]
Sent: Wednesday, February 02, 2011 11:46 AM
To: Neeraj Gohad

Fascinating article. Some of my recollections (possibly with some
inaccuracies but the best I can recollect) involve Fernandez-Moran who is
credited with developing the first diamond knives for use with
ultra-microtomes as well as a cryo ultra-microtome and a number of other
interesting developments.

I worked for Fernandez-Moran at the U. of Chicago for a few years starting
in 1963. This was after he was forced to leave Venezuela and then did a
short stay at MIT before being recruited by U. of C. He had a microtome,
presumably of his design, that only he used on rare occasion. Almost all
the imaging done in the lab was with negatively stained samples.

He, of course, had his diamond knives. The technique to make them was
perfected at the lab for neurological research that he built in Venezuela.
(He was forced to leave Venezuela when the government was taken over by a
military coup and he was on the wrong side, but that's another story.) He
had a workshop there with his diamond cutters, etc. After developing the
knives, he sent them out to the leading investigators of the day to get them
to try them so that they would then buy them. Dupont picked up on the idea
and also began making them for sale. Moran had patented the process so was
able to sue Dupont and did win. I believe he later agreed to give them
rights to make and market the knives.

Moran's lab at Chicago was quite a place. It was a semi-clean room lab in
the basement of the Research Institute. The floors were raised so that all
the water and vacuum lines for the microscopes were underneath with
mechanical pumps and water recirculators a long ways away from the
microscopes. He had 3 Seimens 1 and 1A TEMS on vibration mounts with the
raised floor cut around the microscope bases so that moving a chair would
not affect the TEM stability. A motor generator located in the attic of the
building provided stable power. I started out as a technician and we all
wore white nylon lab coats, white rubber shoes that we washed weekly, and
little white hats. Visitors suited up in lab coats with plastic bags over
their shoes. Pre-pumps to evacuate the film cameras were located two floors
up. We would put on our red goggles to retain our dark adaptation, put
plastic bags over our plastic shoes, and shuffle up to get new film
cameras...looked like Martians!

It was an interesting time. There was also a couple of Japanese scientists
working on an early Hitachi microscope trying to set resolution records.
They would literally disassemble the microscope after just a few tries to
clean it and get ready for the next attempts. They were the only ones with
the patience to deal with that microscope. Later Perk and Elmer Company
came along and helped with design changes to make it more user-friendly and
thus more marketable.

Pointed filaments were also made in the lab. E.F. Fullam came one time to
see how they were made and then was able to start selling them commercially.

Moran built a helium-cooled microscope to improve resolution using
superconducting lenses. I do not know if it was originally his idea or if he
"borrowed" someone else's idea. However, they built a liquid helium
recirculator system, again with most of it in the attic 4 stories up. The
helium flowed through a special jacket on the microscope that encased the
entire upper part of the column through the objective lens. They managed to
get a few images but then Moran lost interest. A series of health problems
shortly thereafter led to closing down the lab and and end to a very
interesting few years. Louie Ouwerkerk was a Dutch engineer who, along with
the great U. of Chicago Instrument shop, designed and built a lot of Moran's
ideas.

Debby

P.S. I have time to write this as the university is closed due to a major
snow storm that hit us over the last 24 hours. Looks very pretty out there
but....

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy




On 2/2/11 6:43 AM, "terry.cooper-at-btinternet.com"
{terry.cooper-at-btinternet.com} wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} ----------------------------------------------------------------------------
}
} Dear Listers
}
} Sorry for the delay in response to this topic, but due to an error on my on
} my part my previous communication went astray. For those who may be
} interested in the history of ultramicrotomy I do have a copy of an article
} in PDF form which traces the development of the ultramicrotome from "wedge"
} sections in the late thirties where the thin end of the wedge was
} (hopefully) transparent to electrons, through the high speed era (actually
} up to 57000 rpm), overcoming embedding limitations and finally discussing
} the first generation of commercial instruments.
}
} Please contact me on terry.cooper-at-btinternet.com and I can attach the
} missive,
}
} Best regards
}
} Terry Cooper
} TAAB Laboratories Equipment
} 3 Minerva House, Calleva Park
} Aldermaston, Berks, RG7 8NA, England
} Tel ++44(0)118 981 7775
} Fax ++44(0)118 981 7881
} e-mail sales-at-taab.co.uk
} www.taab.co.uk
}
}
} ==============================Original Headers==============================
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From: common-at-msu.edu
Date: Wed, 2 Feb 2011 13:37:24 -0600
Subject: [Microscopy] SEM sample storing

Contents Retrieved from Microscopy Listserver Archives
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Glutaraldehyde can deteriorate over time and produce a white precipitate
that could coat the specimens. For long term storage it is not a good
idea.

Ralph Common

==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Thu, 3 Feb 2011 08:43:34 -0600
Subject: [Microscopy] Re: viaWWW:SEM sample storing

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Store for how long? What kind of specimens?
I have stored soft tissue samples for a couple of days in glut with
no problems, and crustaceans with well sclerotized cuticles for
several days, but ... lightly sclerotized crusties and body parts
don't like it. (Note! Watch the pH! The fix can cause dissolution of
Ca in the crustacean exoskeleton.)
When I had to process, store, then transport samples from Antarctica
to Chicago, I ran them up into 100% Pel-Dri (back when it was
allowed) or 100% HMDS. This worked. The samples fish lateral-lines
and lateral-line end organs, and they compared well to freshly fixed,
processed, and dried end-organs collected in Lake Michigan. The
sample vials where completely full of fluid, with a 10:1 or 20:1
fluid:specimen volume ratio.
But.
The best way is to fix, process, dry, mount, and stick in a
desiccator. Don't coat. The expansion and shrinkage of the samples
when moving them from the desiccator to the SEM and back can cause
fine cracks in a sputter-coated metal layer. Coat when ready to
examine.

Phil

} Email: wadowska-at-upei.ca Name: Dorota Wadowska
}
} Organization: Atlantic Veterinary College at UPEI
}
} Title-Subject: [Filtered] SEM sample storing
}
} Message: Hello all,
} One of our EM lab users asked me a question: what is the best way to
} store SEM samples? I know you'll all say that the best is to process and
} coat first. He wants to store them in 2% glutaraldehyde and process
} later since he does not have time at the moment. What is your
} experience? I am not an expert in SEM.
} Thank you Dorota
} Login Host: 137.149.102.148

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 3 Feb 2011 11:56:52 -0600
Subject: [Microscopy] viaWWW:Silicone rubber Ultramicrotome for TEM

Contents Retrieved from Microscopy Listserver Archives
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Email: z.zhou-at-lboro.ac.uk Name: Zhou
Organization: Dept of Materials, Loughborough University, UK

Title-Subject: [Filtered] Silicone rubber Ultramicrotome for TEM

Message: I use a Cambridge Huxley ultra-microtome to slice polymer
composites for TEM. The samples, such as clays in Polypropylene,
nanotubes in epoxy, are embedded in an Agar low viscosity resin (set at
60 degreeC).
I operate it at room temperature, and cut the above polymers fine.
Recently, there are some really soft polymers, such as organoclay filled
silicone rubber, polyethylene, etc.., which I found difficult to get
flat slices.

I was suggested to try low temperature; say -70degree C. But the lab
does not have a cryo-microtome. We thought about first dipping the
embedded sample in liquid N2, then slicing it as usual at room
temperature, as long as the temperature donÂ’t affect the samples. My
question is---- can my diamond knife (Drukker international) survive
that low temperature? Or a glass knife? Has anybody tried this before?
Any tricks or experience would be very much appreciated.

Zhou


Login Host: 158.125.68.189
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 3 Feb 2011 22:41:19 -0600
Subject: [Microscopy] viaWWW:Cold start up of SX50

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Email: lysa.chizmadia-at-upr.edu Name: Lysa Chizmadia

Organization: University of Puerto Rico

Title-Subject: [Filtered] Cold start up of SX50

Message: Hello everyone,

I hope you had a happy holiday season.
We have finally solved our bad water chiller situation and I'm ready to
fire up our SX50 for the first time in two years. However, I'm
concerned about any maintenance I should perform on the vacuum pumps
since they haven't run in quite some time.
Thank you very much.

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==============================Original Headers==============================
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From: ejb1176-at-gmail.com
Date: Thu, 3 Feb 2011 23:32:16 -0600
Subject: [Microscopy] Re: viaWWW:HMDS, How does it work...

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Drawing from my cleanroom experience.... HMDS is used as a photoresist
adhesion agent for Si wafers. It binds to hydroxyl groups.
It makes sense to think of as having mordant properties, strengthening
the specimen with Si. The low surface tension also plays an important
role.

http://www.transene.com/hexa.html

cheers
ed


Edward J. Basgall, Ph.D.
Microscopy Manager
Drexel University - Central Research Facility
106 Bossone Research Center
31st and Market Streets
Philadelphia, PA 19104
office: (215) 895-2379



On Wed, Feb 2, 2011 at 10:07 AM,
{microscopylistserver-noreply-at-microscopy.com} wrote:
}
}
}
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} Email: bbandli-at-d.umn.edu Name: Bryan Bandli
}
} Organization: University of Minnesota, Duluth
}
} Title-Subject: [Filtered] HMDS, How does it work...
}
} Message: Hi All,
}
} I'm looking for a reference to explain just how/why HMDS works to dry
} specimens for SEM observation.  There are plenty of references showing
} that it does, in fact, work and produces good results in many cases but
} I have yet to find an explanation as to the "why".
} Is it that HMDS has the right physical properties (surface tension) to
} evaporate without causing drying artifacts?
}
} Or, is there something about the silanization of the sample that helps
} make it more robust, or both, or am I completely lost (quite likely)?
}
} Thanks in advance for your input!
}
} Cheers,
}
} Bryan Bandli
} University of MN, Duluth
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 4 Feb 2011 22:55:54 -0600
Subject: [Microscopy] viaWWW:PC interfaced Penning/cold cathode options?

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Email: rick.hughes-at-microanalysis.com.au Name: Rick Hughes

Organization: Microanalysis Australia

Title-Subject: [Filtered] PC interfaced Penning/cold cathode options?

Message: Does anyone have any recommendations for a PC interfaced
Penning/cold cathode vacuum gauge? We do a lot of web interfaced SEM
control and it would be an added bonus to be able to check the chamber
vacuum when not sitting in front of the microscope!

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From: per.horstedt-at-medbio.umu.se
Date: Mon, 7 Feb 2011 04:27:37 -0600
Subject: [Microscopy] ccd camera driver

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,
I need a twain driver for an old JVC TK-C1381 (same as 1380) CCD camera
used for LM-work.
Would really appreciate if someone could help me as I've searched the
internet without any success.

Cheers,

Per Hörstedt
EM Platform
KBC Building
University of Umea
S-90186 Umea
Sweden





==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 7 Feb 2011 11:54:49 -0600
Subject: [Microscopy] viaWWW:Job Opportunity - Product Manager

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: ianlamswood44-at-yahoo.co.uk Name: Ian Lamswood

Organization: Leica Microsystems

Title-Subject: [Filtered] Product Manager

Message: Job Opportunity - Product Manager.

Leica Microsystems is seeking applicants for a Product Manager in the
area of EM Sample Preparation.
Based in the Nanotechnology Business Unit, Vienna, Austria, the
potential candidate will be responsible for instruments in the area of
sample coating and freeze fracture.

A good knowledge of sample preparation for biological and/or industrial
materials samples is necessary and knowledge of freeze fracture and
coating a pre-requisite. Sales and product management skills would be an
asset.
A good knowledge of the English language is required and German is also
useful.
An attractive remuneration package is available to the successful candidate.

For further details please email your CV to:
Thomas Remes, HR Manager, Leica Microsystems, Vienna, Austria

Thomas.Remes-at-leica-microsystems.com

Before 18th February 2011


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==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 7 Feb 2011 17:07:54 -0600
Subject: [Microscopy] viaWWW:Interfacing problem on FEI TIA/Emispec ESVision and Gatan

Contents Retrieved from Microscopy Listserver Archives
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Email: subbakaravadi-at-gmail.com Name: Rao Karavadi

Organization: Penn State University

Title-Subject: [Filtered] Interfacing problem on FEI TIA/Emispec
ESVision and Gatan Digital Micrograph for EELS

Message: Problems interfacing FEI TIA/Emispec ESVision and Gatan Digital
Micrograph for EELS

We are experiencing a problem in accessing EELS spectrum through
TIA/ESVision after we upgraded our computer operating systems to Windows
XP and Digital micrograph from 1.6 to 1.8. The error message while
opening ES vision is

“Cannot load plugin for GatanCCD.dll”

We have not made any changes to ES vision or the Emispec computer. The
two computers are connected through an Ethernet cable.
I would greatly appreciate your suggestion on this issue.

Thanks
Rao




Login Host: 24.228.81.124
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==============================Original Headers==============================
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15, 26 -- To: MicroscopyListServer-Forward {microscopy-at-microscopy.com}
15, 26 -- Subject: viaWWW:Interfacing problem on FEI TIA/Emispec ESVision and Gatan
15, 26 -- Digital Micrograph for EELS
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15, 26 -- Content-Transfer-Encoding: 8bit
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From: parishcm-at-ornl.gov
Date: Tue, 8 Feb 2011 06:14:07 -0600
Subject: [Microscopy] viaWWW:Interfacing problem on FEI TIA/Emispec ESVision and Gatan

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Rao,

We were unable to get Emispec to work on Windows XP. We didn't try to upgrade to DM 1.8, but we did have camera driver problems.

I suggest you look for funding to replace the Emispec with Gatan Digiscan II -- it has all the same capabilities and more, and it supported by a manufacturer. We replaced Emispec with Digiscan II on our CM200 FEG and it works like a champ, providing TEM, EFTEM, EDS, and EELS in an integrated package.

Chad Parish





-----Original Message-----
X-from: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Monday, February 07, 2011 6:26 PM
To: Parish, Chad M.

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: subbakaravadi-at-gmail.com Name: Rao Karavadi

Organization: Penn State University

Title-Subject: [Filtered] Interfacing problem on FEI TIA/Emispec
ESVision and Gatan Digital Micrograph for EELS

Message: Problems interfacing FEI TIA/Emispec ESVision and Gatan Digital
Micrograph for EELS

We are experiencing a problem in accessing EELS spectrum through
TIA/ESVision after we upgraded our computer operating systems to Windows
XP and Digital micrograph from 1.6 to 1.8. The error message while
opening ES vision is

Â"Cannot load plugin for GatanCCD.dllÂ"

We have not made any changes to ES vision or the Emispec computer. The
two computers are connected through an Ethernet cable.
I would greatly appreciate your suggestion on this issue.

Thanks
Rao




Login Host: 24.228.81.124
---------------------------------------------------------------------------



==============================Original Headers==============================
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15, 26 -- Digital Micrograph for EELS
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==============================Original Headers==============================
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29, 39 -- Date: Tue, 08 Feb 2011 07:14:03 -0500
29, 39 -- From: "Parish, Chad M." {parishcm-at-ornl.gov}
29, 39 -- Subject: RE: [Microscopy] viaWWW:Interfacing problem on FEI TIA/Emispec
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From: modla-at-dbi.udel.edu
Date: Tue, 8 Feb 2011 07:49:04 -0600
Subject: [Microscopy] Help with Sectioning Soil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Everyone,

We need to section clay soil samples for STXM-NEXAFS analysis to a
thickness of about 0.5 micron. The problem is that some of the soils
contain glass particles so we have to use a glass knife to get
sections. The second problem is the researchers want to know if carbon
is coating the soil particles, so we can't embed them in any type of
resin. I attempted to attach the soil to a BEEM capsule with superglue
and then section the particles sticking off the surface, but the
researchers suspect that superglue got on/in their particles. Moreover,
the soil particles more or less fractured during sectioning at 0.5
micron thickness rather than being uniformly cut.

Does anyone have any experience dealing with this type of sample? My
background is with TEM of soft biological samples, so any advice or
suggestions would be greatly appreciated.

Thanks,

Shannon

Delaware Biotechnology Institute
15 Innovation Way
Newark, DE 19711

==============================Original Headers==============================
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From: ian.maclaren-at-glasgow.ac.uk
Date: Tue, 8 Feb 2011 08:07:34 -0600
Subject: [Microscopy] Re: Help with Sectioning Soil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

No idea really, but how about if the soil is hydrated, freezing and then microtoming

or freezing it, putting in a cryostage and making a section with FIB, if that's possible (does anyone do CryoFIB????)

Anyway, in either case, if you can't use resin, then hold it together with frozen water.

Is this any use or are my ideas completely off-base?

Ian

} Hi Everyone,
}
} We need to section clay soil samples for STXM-NEXAFS analysis to a
} thickness of about 0.5 micron. The problem is that some of the soils
} contain glass particles so we have to use a glass knife to get
} sections. The second problem is the researchers want to know if carbon
} is coating the soil particles, so we can't embed them in any type of
} resin. I attempted to attach the soil to a BEEM capsule with superglue
} and then section the particles sticking off the surface, but the
} researchers suspect that superglue got on/in their particles. Moreover,
} the soil particles more or less fractured during sectioning at 0.5
} micron thickness rather than being uniformly cut.
}
} Does anyone have any experience dealing with this type of sample? My
} background is with TEM of soft biological samples, so any advice or
} suggestions would be greatly appreciated.
}
} Thanks,
}
} Shannon

Dr Ian MacLaren
BSc (Hons), PhD, MInstP, CPhys
Lecturer in Physics

Direct line: +44 (0)141 330 4700
Fax:: +44 (0)141 330 4464

Solid State Physics
School of Physics and Astronomy
University of Glasgow
Glasgow G12 8QQ

http://www.ssp.gla.ac.uk/

The University of Glasgow, charity number SC004401



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From: klivi-at-jhu.edu
Date: Tue, 8 Feb 2011 12:11:28 -0600
Subject: [Microscopy] Re: viaWWW:Interfacing problem on FEI TIA/Emispec ESVision and Gatan

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Rao,
We use ES Vision 4 on an XP computer along with Gatan Digital Micrograph v1.8 (all in one computer). The problem you are having refers to a plugin file that should be in the EmiSpec/ES Vision/Plugin Files folder. This should be reloaded if it is not there. If you have lost it contact me offline and I should be able to get that file to you. The only problem with Emispec software is that there are very few people left that know anything about it. It was the precursor for the FEI TIA platform, but is now so many versions behind that it is a different species now!
Ken

On Feb 7, 2011, at 6:13 PM, microscopylistserver-noreply-at-microscopy.com wrote:

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}
} Organization: Penn State University
}
} Title-Subject: [Filtered] Interfacing problem on FEI TIA/Emispec
} ESVision and Gatan Digital Micrograph for EELS
}
} Message: Problems interfacing FEI TIA/Emispec ESVision and Gatan Digital
} Micrograph for EELS
}
} We are experiencing a problem in accessing EELS spectrum through
} TIA/ESVision after we upgraded our computer operating systems to Windows
} XP and Digital micrograph from 1.6 to 1.8. The error message while
} opening ES vision is
}
} “Cannot load plugin for GatanCCD.dll”
}
} We have not made any changes to ES vision or the Emispec computer. The
} two computers are connected through an Ethernet cable.
} I would greatly appreciate your suggestion on this issue.
}
} Thanks
} Rao
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|_|"|_|"|_|_|"|_|"|_|"|_|_|"|_|"|_|_|"|_|"|_|"|_|_|
Kenneth JT Livi, PhD
Director, The High-Resolution Analytical Electron Microbeam Facility
of the Integrated Imaging Center
Departments of Earth and Planetary Sciences and Biology
Olin Hall
3400 N Charles Street
Johns Hopkins University
Baltimore, Maryland 21218 USA
| | | .| | .| | .| | .| | | :| | | .| | .| | .| | .| | | :|










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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 8 Feb 2011 13:50:17 -0600
Subject: [Microscopy] viaWWW:Position:Microscope Facility Manager

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
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Email: tj_yen-at-fccc.edu Name: Dr. Tim Yen

Organization: Fox Chase Cancer Center

Title-Subject: [Filtered] Position:Microscope Facility Manager

Message: Microscope Facility manager at the Fox Chase Cancer Center,
Philadelphia, PA.

We are seeking a Ph.D. level Manager to oversee our Cell Imaging
Facility. Interested individuals should have expertise in EM and high
resolution quantitative light microscopy (confocal, time-lapse, and
immunocytochemistry). Candidates familiar with immunogold labeling, and
advanced imaging techniques such as FRET and FRAP are preferred. The
cell imaging facility serves a diverse base of users with variable
experience in advanced microscopy techniques. The duties of the manager
include developing and incorporating new technologies into the facility,
training users in the proper use of various imaging equipment, and
assisting the Director in submitting instrumentation grant applications.
This is a non-tenure track faculty position and the appointment is
commensurate with experience. Applicants should submit their CV and
statement of research interests along with references to:
Roseanne.Brooks-at-fccc.edu



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From: LettJ-at-ent.wustl.edu
Date: Tue, 8 Feb 2011 14:35:42 -0600
Subject: [Microscopy] FACILITIES online scheduling

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Our facility is currently using a Calcium calendar package (specifically
Calcium 3.10.1 Professional 25 w/Email by Brown Bear Software) for
online equipment scheduling. We're fairly pleased with it, but we've
been notified of incompatibilities with upcoming changes to our website
(programming and design, hosting, servers, etc). Unfortunately, I don't
know the details at this time.

We're looking for something that's relatively inexpensive, secure,
user-friendly, somewhat customizable, and allows us to send email
notifications and export events to data files (which we can then import
into Excel for recordkeeping, billing and analysis). And we need the
option to administer calendars for at least ten different pieces of
equipment.

We'd appreciate all the suggestions we can get. We'll take a look at
them and run our selections past our webkeepers. (You may send
responses directly to me offline.)

Thank you so much for your help,

Jaci

Jaclynn Lett
Senior Research Technician, EM Facility
Research Center for Auditory and Vestibular Studies
Department of Otolaryngology
Washington University School of Medicine
660 S. Euclid Ave., Campus Box 8115
Saint Louis, MO 63110

Email: lettj-at-ent.wustl.edu
Office: 314-747-7257
Fax: 314-747-7230
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From: FMonson-at-wcupa.edu
Date: Tue, 8 Feb 2011 22:05:37 -0600
Subject: [POSSIBLE SPAM] [Microscopy] Re: Help with Sectioning Soil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Volume 31, Pages iii-viii, 1-203 (1981)

Electron Micrographs of Clay Minerals
Edited by: Toshio Sudo, Susumu Shimoda, Haruo Yotsumoto and Saburo Aita
ISBN: 9780444997517

Promise of methods for TEM???

Best I can do.
________________________________________
X-from: ian.maclaren-at-glasgow.ac.uk [ian.maclaren-at-glasgow.ac.uk]
Sent: Tuesday, February 08, 2011 9:13 AM
To: Monson, Frederick

No idea really, but how about if the soil is hydrated, freezing and then microtoming

or freezing it, putting in a cryostage and making a section with FIB, if that's possible (does anyone do CryoFIB????)

Anyway, in either case, if you can't use resin, then hold it together with frozen water.

Is this any use or are my ideas completely off-base?

Ian

} Hi Everyone,
}
} We need to section clay soil samples for STXM-NEXAFS analysis to a
} thickness of about 0.5 micron. The problem is that some of the soils
} contain glass particles so we have to use a glass knife to get
} sections. The second problem is the researchers want to know if carbon
} is coating the soil particles, so we can't embed them in any type of
} resin. I attempted to attach the soil to a BEEM capsule with superglue
} and then section the particles sticking off the surface, but the
} researchers suspect that superglue got on/in their particles. Moreover,
} the soil particles more or less fractured during sectioning at 0.5
} micron thickness rather than being uniformly cut.
}
} Does anyone have any experience dealing with this type of sample? My
} background is with TEM of soft biological samples, so any advice or
} suggestions would be greatly appreciated.
}
} Thanks,
}
} Shannon

Dr Ian MacLaren
BSc (Hons), PhD, MInstP, CPhys
Lecturer in Physics

Direct line: +44 (0)141 330 4700
Fax:: +44 (0)141 330 4464

Solid State Physics
School of Physics and Astronomy
University of Glasgow
Glasgow G12 8QQ

http://www.ssp.gla.ac.uk/

The University of Glasgow, charity number SC004401



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From: nizets2-at-yahoo.com
Date: Wed, 9 Feb 2011 02:32:40 -0600
Subject: [Microscopy] Help with Sectioning Soil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Shannon!

I am not a specialist of mother earth but I cannot imagine any kind of soil
sample without superficial carbon contamination.
Now here is my opinion: in your description your 2 problems can be solved
separately.
The first one is to verify if there is carbon contamination on the surface of
your sample. In this case you don't need to cut sections, just put your sample
in a SEM with a low kV and see if you can detect carbon. There may be other
solutions, but in any case this does not require cutting sections.

Then you need to analyse sections. Now you have analyzed the surface you don't
care if you add more carbon, just embed the best way possible, cut your sample
and analyse the sections.

Alternatively, as already stated, you may try to etch the sample and analyse the
etched surface with FIB (even without freezing).

Good luck,

Stephane


 
----- Original Message ----
X-from: "modla-at-dbi.udel.edu" {modla-at-dbi.udel.edu}
To: nizets2-at-yahoo.com
Sent: Tue, February 8, 2011 2:53:19 PM

Hi Everyone,

We need to section clay soil samples for STXM-NEXAFS analysis to a
thickness of about 0.5 micron.  The problem is that some of the soils
contain glass particles so we have to use a glass knife to get
sections.  The second problem is the researchers want to know if carbon
is coating the soil particles, so we can't embed them in any type of
resin.  I attempted to attach the soil to a BEEM capsule with superglue
and then section the particles sticking off the surface, but the
researchers suspect that superglue got on/in their particles.  Moreover,
the soil particles more or less fractured during sectioning at 0.5
micron thickness rather than being uniformly cut.

Does anyone have any experience dealing with this type of sample?  My
background is with TEM of soft biological samples, so any advice or
suggestions would be greatly appreciated.

Thanks,

Shannon

Delaware Biotechnology Institute
15 Innovation Way
Newark, DE 19711

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From: syli-at-northwestern.edu
Date: Wed, 9 Feb 2011 11:54:47 -0600
Subject: [Microscopy] FACILITIES online scheduling

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jaci and other listers,

You may want to have a look on the Facility Online Manager (FOM) system at
http://www.fomnetworks.com/.
The FOM system provides a complete solution from resource scheduling to
billing and reporting. FOM is capable of managing unlimited number of
facilities, instruments, and users. If you need scheduler-only functions, it
costs $100 for life time use with free hosting.

Please contact me offline if you are interested.
Thanks,
Shuyou
_________________
Shuyou Li, Ph.D.
FOM Networks, Inc.
www.fomnetworks.com
224-225-9168


-----Original Message-----
X-from: LettJ-at-ent.wustl.edu [mailto:LettJ-at-ent.wustl.edu]
Sent: Tuesday, February 08, 2011 2:39 PM
To: syli-at-northwestern.edu

Our facility is currently using a Calcium calendar package (specifically
Calcium 3.10.1 Professional 25 w/Email by Brown Bear Software) for online
equipment scheduling. We're fairly pleased with it, but we've been notified
of incompatibilities with upcoming changes to our website (programming and
design, hosting, servers, etc). Unfortunately, I don't know the details at
this time.

We're looking for something that's relatively inexpensive, secure,
user-friendly, somewhat customizable, and allows us to send email
notifications and export events to data files (which we can then import into
Excel for recordkeeping, billing and analysis). And we need the option to
administer calendars for at least ten different pieces of equipment.

We'd appreciate all the suggestions we can get. We'll take a look at them
and run our selections past our webkeepers. (You may send responses
directly to me offline.)

Thank you so much for your help,

Jaci

Jaclynn Lett
Senior Research Technician, EM Facility
Research Center for Auditory and Vestibular Studies Department of
Otolaryngology Washington University School of Medicine
660 S. Euclid Ave., Campus Box 8115
Saint Louis, MO 63110

Email: lettj-at-ent.wustl.edu
Office: 314-747-7257
Fax: 314-747-7230
Website: http://otocore.wustl.edu
This email and any files transmitted with it are confidential and intended
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If you have received this email in error please notify the system manager.
This message contains confidential information and is intended only for the
individual named. If you are not the named addressee you should not
disseminate, distribute or copy this e-mail.


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18, 23 -- From syli-at-northwestern.edu Wed Feb 9 11:54:46 2011
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From: spurgeon-at-drexel.edu
Date: Wed, 9 Feb 2011 19:10:37 -0600
Subject: [Microscopy] FACILITIES online scheduling

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Our lab uses the Faces Scheduling System, run by the Complex
Carbohydrate Research Center at the University of Georgia. The
schedule itself runs inside a Java applet, so it's accessible from any
device or operating system. You can add users, assign permissions, and
manage multiple instruments. The software is remotely hosted and free
to use.

For more information visit: http://faces.ccrc.uga.edu/ccrcfaces/faq0.php4

--
Steven Spurgeon
Dynamic Characterization Group
Department of Materials Science & Engineering
Drexel University

Cell: 719.330.0441
Office: Bossone 105
Email: spurgeon-at-drexel.edu
Web: http://www.materials.drexel.edu/dcg/


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From: kamlennon-at-yahoo.com
Date: Wed, 9 Feb 2011 20:34:36 -0600
Subject: [Microscopy] plant micrographs needed

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Hi Listers,

I have a request that is very different from my usual pleas for help. I'm
putting together some educational materials on plant biology for the upcoming
AAAS Family Science Days in Washington DC next weekend and I've hit a snag with
some illustrations that I wanted to use - got permission, then just got a BIG
bill. Given the timeline, putting together some new micrographs of my own is
just not in the cards, though I'm looking, looking, looking through my files.

Would anyone out there be willing to donate light and/or TEM micrographs of the
following? I will be sure to cite the donor in my materials and happy to send
you an electronic copy of them.

1. a relatively high mag TEM of a chloroplast, the entire organelle
2. a light micrograph of chloroplasts
3. a light micrograph of a cross section of a dicot leaf
4. a light micrograph of a cross section of a dicot stem
5. a light micrograph of a longitudinal section of a dicot stem
6. a light micrograph of a cross section of a root
7. a light micrograph of a longitudinal section of a root

Specifically, these are going on an interactive poster exploring photosynthesis.

I put it together for the recent US Science & Engineering Festival on a small
scale in my area and have been asked to make it available at the upcoming AAAS
Family Science Days and on the American Society of Plant Biologist's education
web resource. Anything that we can do to get the public more interested in
science!

Thanks in advance for your help. If you are willing to share a micrograph,
please send me an email. Please include how you would like to be cited in the
materials in your email.

Best,
Kristen Lennon
Department of Biology
Frostburg State University
Frostburg, MD 21532
kalennon-at-frostburg.edu





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12, 29 -- From: Kristen Lennon {kamlennon-at-yahoo.com}
12, 29 -- Subject: plant micrographs needed
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From: nizets2-at-yahoo.com
Date: Thu, 10 Feb 2011 07:16:40 -0600
Subject: [Microscopy] reference manager software

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear all,

Sorry if this message is not directly related to microscopy but it is definitely
related to scientific work.
We are looking for a software to manage our scientific literature.
Commercial reknown software like Endnote or reference manager are la creme de la
creme but it comes to a price.
I was wondering if a free or low-cost software could not fulfill the task as
well.
What we want/want not:

- Possibility to share the database between numerous computers.
- Database saved on our server, not on the internet
- Integration with microsoft word would be nice but not necessary
- Possibility to retrieve the references directly from Pubmed would be nice but
not necessary

I know there is a nice comparison page in wikipedia but I am a little bit
limited to inderstand the vocabulary used (web-based and so on) and also it
would be interesting to get the opinion of experienced users.

Many thanks in advance.

Stephane





==============================Original Headers==============================
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9, 34 -- Date: Thu, 10 Feb 2011 05:16:39 -0800 (PST)
9, 34 -- From: Stephane Nizet {nizets2-at-yahoo.com}
9, 34 -- Subject: reference manager software
9, 34 -- To: microscopy-at-microscopy.com
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From: baskin-at-bio.umass.edu
Date: Thu, 10 Feb 2011 07:33:28 -0600
Subject: [Microscopy] Re: reference manager software

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Stephane,
A wonderful and highly regarded reference
managing software is or was Papyrus. I say is or
was because this was supported for Mac OS 9 but
not OS 10. As a mac user I don't know if it
remains supported for the latest versions of
Windows. It could do *anything* and did it with a
sense of humor.

As a MacOS 10 person, I use software
called Bookends. I like it just fine, although
there are a few things I miss from Papyrus. It
does all the things you ask for. I dont know if
there is a PC version. It is not free but I found
the cost reasonable.

Hope this helps,
Tobias


}
}
} Dear all,
}
} Sorry if this message is not directly related to
} microscopy but it is definitely
} related to scientific work.
} We are looking for aÝsoftware to manage our scientific literature.
} Commercial reknown software like Endnote or
} reference manager are la creme de la
} creme but it comes to a price.
} I was wondering if a free or low-cost software could not fulfill the task as
} well.
} What we want/want not:
}
} - Possibility to share the database between numerous computers.
} - Database saved on our server, not on the internet
} - Integration with microsoft word would be nice but not necessary
} - Possibility to retrieve the references
} directly from Pubmed would be nice but
} not necessary
}
} I know there is a nice comparison page in wikipedia but I am a little bit
} limited to inderstand the vocabulary used (web-based and so on) and also it
} would be interesting to get the opinion of experienced users.
}
} Many thanks in advance.
}
} Stephane
}
}

--
_ ____ __ ____
/ \ / / \ / \ \ Tobias I. Baskin
/ / / / \ \ \ Biology Department
/_ / __ /__ \ \ \__ 611 N. Pleasant St.
/ / / \ \ \ University of Massachusetts
/ / / \ \ \ Amherst, MA, 01003
/ / ___ / \ \__/ \ ____
www.bio.umass.edu/biology/baskin
Voice: 413 - 545 - 1533 Fax: 413 - 545 - 3243


==============================Original Headers==============================
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7, 23 -- To: nizets2-at-yahoo.com
7, 23 -- From: Tobias Baskin {baskin-at-bio.umass.edu}
7, 23 -- Subject: Re: [Microscopy] reference manager software
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From: george.theodossiou-at-st-annes.ox.ac.uk
Date: Thu, 10 Feb 2011 07:47:19 -0600
Subject: [Microscopy] reference manager software

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Stephane,

Try Medeley at the following link:
http://www.mendeley.com/

Its free, can save the references to internet and your local HD, can link the PDF's, works with Microsft Office, will import citations from Science Direct, ISI Web of Science.
You can also share libraries with colleagues and there is a development forum where users can suggest new functionality.

I'm a DPhil student in Materials, I like it, and most of my colleagues also like and use it.

Try it out you have nothing to lose and reference management to gain.

Cheers
George

________________________________________
X-from: nizets2-at-yahoo.com [nizets2-at-yahoo.com]
Sent: 10 February 2011 13:26
To: George Theodossiou

Dear all,

Sorry if this message is not directly related to microscopy but it is definitely
related to scientific work.
We are looking for a software to manage our scientific literature.
Commercial reknown software like Endnote or reference manager are la creme de la
creme but it comes to a price.
I was wondering if a free or low-cost software could not fulfill the task as
well.
What we want/want not:

- Possibility to share the database between numerous computers.
- Database saved on our server, not on the internet
- Integration with microsoft word would be nice but not necessary
- Possibility to retrieve the references directly from Pubmed would be nice but
not necessary

I know there is a nice comparison page in wikipedia but I am a little bit
limited to inderstand the vocabulary used (web-based and so on) and also it
would be interesting to get the opinion of experienced users.

Many thanks in advance.

Stephane





==============================Original Headers==============================
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==============================Original Headers==============================
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From: michael.anderson-at-nist.gov
Date: Thu, 10 Feb 2011 07:51:22 -0600
Subject: [Microscopy] reference manager software

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Stephane,

Some that I have fooled around with are I,Librarian (http://www.bioinformatics.org/librarian/), Paperpile (http://paperpile.com), Mendeley (http://www.mendeley.com/), Zotero (http://www.zotero.org/), and Papers (http://www.mendeley.com/). Of these, I currently use Mendeley for Windows and Papers for OS X. That said, I,Librarian seems to be what you are after as far as being server-based and cross-platform and it looks to have most of what you are after in regard to functionality. Paperpile is a nice analog to Papers that is free and cross platform, but still in beta. Mendeley, and this is my personal opinion only, is only okay at best. There is a lot of basic functionality that it lacks and the server support you want isn't free. Zotero is pretty feature rich but has the same issue of limited free server space. Papers is Mac only and not free, but it has become the defacto metric for all the others. I haven't seen a review of one of these applications in recent years that doesn't include a comparison to it. I hope that helps!

Best,

Mike Anderson
(Please note that this is an expression of personal preference and not official endorsement by NIST.)

-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Thursday, February 10, 2011 8:28 AM
To: Anderson, Michael

Dear all,

Sorry if this message is not directly related to microscopy but it is definitely
related to scientific work.
We are looking for a software to manage our scientific literature.
Commercial reknown software like Endnote or reference manager are la creme de la
creme but it comes to a price.
I was wondering if a free or low-cost software could not fulfill the task as
well.
What we want/want not:

- Possibility to share the database between numerous computers.
- Database saved on our server, not on the internet
- Integration with microsoft word would be nice but not necessary
- Possibility to retrieve the references directly from Pubmed would be nice but
not necessary

I know there is a nice comparison page in wikipedia but I am a little bit
limited to inderstand the vocabulary used (web-based and so on) and also it
would be interesting to get the opinion of experienced users.

Many thanks in advance.

Stephane





==============================Original Headers==============================
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9, 34 -- Subject: reference manager software
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From: DOrloff-at-ascb.org
Date: Thu, 10 Feb 2011 08:27:38 -0600
Subject: [Microscopy] plant micrographs needed

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Kristen,

We have some images in The Cell: An Image Library(tm) www.cellimagelibrary.org that you might find useful and many of them are in the public domain, so free for you to use.

1. Just enter chloroplast in the simple search box at the top of the homepage.

As to the others, unfortunately, we do not yet have a lot of plant cell images. Please do consider submitting yours to The Library when you have the time.

If I can be of further assistance please let me know.

David


David Orloff
Manager, Image Library
The American Society for Cell Biology
The science of life, the life of science
8120 Woodmont Avenue, Suite 750
Bethesda, MD 20814-2762
T: 301-347-9300/Direct: 301-347-9305
F: 301-347-9310
E-mail:  dorloff-at-ascb.org
Web site: www.ascb.org
The Cell: An Image LibraryT: www.cellimagelibrary.org
LinkedIn Group: http://www.linkedin.com/groupRegistration?gid=3733425



-----Original Message-----
X-from: kamlennon-at-yahoo.com [mailto:kamlennon-at-yahoo.com]
Sent: Wednesday, February 09, 2011 9:43 PM
To: David Orloff


Hi Listers,

I have a request that is very different from my usual pleas for help. I'm
putting together some educational materials on plant biology for the upcoming
AAAS Family Science Days in Washington DC next weekend and I've hit a snag with
some illustrations that I wanted to use - got permission, then just got a BIG
bill. Given the timeline, putting together some new micrographs of my own is
just not in the cards, though I'm looking, looking, looking through my files.

Would anyone out there be willing to donate light and/or TEM micrographs of the
following? I will be sure to cite the donor in my materials and happy to send
you an electronic copy of them.

1. a relatively high mag TEM of a chloroplast, the entire organelle
2. a light micrograph of chloroplasts
3. a light micrograph of a cross section of a dicot leaf
4. a light micrograph of a cross section of a dicot stem
5. a light micrograph of a longitudinal section of a dicot stem
6. a light micrograph of a cross section of a root
7. a light micrograph of a longitudinal section of a root

Specifically, these are going on an interactive poster exploring photosynthesis.

I put it together for the recent US Science & Engineering Festival on a small
scale in my area and have been asked to make it available at the upcoming AAAS
Family Science Days and on the American Society of Plant Biologist's education
web resource. Anything that we can do to get the public more interested in
science!

Thanks in advance for your help. If you are willing to share a micrograph,
please send me an email. Please include how you would like to be cited in the
materials in your email.

Best,
Kristen Lennon
Department of Biology
Frostburg State University
Frostburg, MD 21532
kalennon-at-frostburg.edu





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12, 29 -- From: Kristen Lennon {kamlennon-at-yahoo.com}
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==============================Original Headers==============================
28, 26 -- From DOrloff-at-ascb.org Thu Feb 10 08:27:37 2011
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28, 26 -- To: "'kamlennon-at-yahoo.com'" {kamlennon-at-yahoo.com} ,
28, 26 -- "'Microscopy-at-Microscopy.Com'" {Microscopy-at-Microscopy.Com}
28, 26 -- CC: David Orloff {DOrloff-at-ascb.org}
28, 26 -- Date: Thu, 10 Feb 2011 09:27:33 -0500
28, 26 -- Subject: RE: [Microscopy] plant micrographs needed
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From: benada-at-biomed.cas.cz
Date: Thu, 10 Feb 2011 08:31:15 -0600
Subject: [Microscopy] Re: reference manager software

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Helo Stephane,
I am using JabRef, an open source bibliography reference manager.
http://jabref.sourceforge.net/

It is a Java based. It's native file format is BibTeX. It can be run instantly with Java Web
Start or it can be installed locally.
It can download references directly from PubMed. It can import references from EndNote, etc.
I am not sure about its integration with MS Word, but it can be integrated with Open Office or
with LyX and other LaTex based editors.

Best regards
Oldrich


On Thursday 10 of February 2011 14:18:57 you wrote:
} ---------------------------------------------------------------------------
} - The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver On-Line Help
} http://www.microscopy.com/MicroscopyListserver/FAQ.html
} --------------------------------------------------------------------------
} --
}
} Dear all,
}
} Sorry if this message is not directly related to microscopy but it is
} definitely related to scientific work.
} We are looking for a software to manage our scientific literature.
} Commercial reknown software like Endnote or reference manager are la creme
} de la creme but it comes to a price.
} I was wondering if a free or low-cost software could not fulfill the task
} as well.
} What we want/want not:
}
} - Possibility to share the database between numerous computers.
} - Database saved on our server, not on the internet
} - Integration with microsoft word would be nice but not necessary
} - Possibility to retrieve the references directly from Pubmed would be nice
} but not necessary
}
} I know there is a nice comparison page in wikipedia but I am a little bit
} limited to inderstand the vocabulary used (web-based and so on) and also it
} would be interesting to get the opinion of experienced users.
}
} Many thanks in advance.
}
} Stephane
}

==============================Original Headers==============================
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From: dcromey-at-email.arizona.edu
Date: Thu, 10 Feb 2011 08:42:54 -0600
Subject: [Microscopy] FACILITIES online scheduling

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We use a locally developed resource, On-Core Facility Scheduler (OCF). It is open-source, and freely available from the Biocomputing facility here at the University of Arizona. It does require Linux and probably a few other things. It's used extensively to schedule all sorts of service labs here and at other universities. There are some very nice administrative features to the software. If your instrument runs on MS Windows, there's even a bit of software that runs in Windows that will report back to OCF server when a user has logged on/off, which helps with calculating the monthly billing. It's a nice bit of software, not perfect, but pretty darn good.

Examples: http://schedule.arl.arizona.edu/select_resource.php?v=1

Contacts for the software: http://bcf.arl.arizona.edu/contact-us/index.php

Demo/downloads: http://demo.arl.arizona.edu/

Doug

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Douglas W. Cromey, M.S. - Assistant Scientific Investigator
Dept. of Cell Biology & Anatomy, University of Arizona
1501 N. Campbell Ave, Tucson, AZ 85724-5044 USA

office: AHSC 4212 email: Cromey-at-Arizona.edu
voice: 520-626-2824 fax: 520-626-2097

http://swehsc.pharmacy.arizona.edu/exppath/
Home of: "Microscopy and Imaging Resources on the WWW"


-----Original Message-----
X-from: spurgeon-at-drexel.edu [mailto:spurgeon-at-drexel.edu]
Sent: Wednesday, February 09, 2011 6:11 PM
To: Cromey, Douglas W - (dcromey)

Our lab uses the Faces Scheduling System, run by the Complex Carbohydrate Research Center at the University of Georgia. The schedule itself runs inside a Java applet, so it's accessible from any device or operating system. You can add users, assign permissions, and manage multiple instruments. The software is remotely hosted and free to use.

For more information visit: http://faces.ccrc.uga.edu/ccrcfaces/faq0.php4

--
Steven Spurgeon
Dynamic Characterization Group
Department of Materials Science & Engineering Drexel University

Cell: 719.330.0441
Office: Bossone 105
Email: spurgeon-at-drexel.edu
Web: http://www.materials.drexel.edu/dcg/


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From: gabriel.lapointe2-at-gmail.com
Date: Thu, 10 Feb 2011 09:30:09 -0600
Subject: [Microscopy] Re: reference manager software

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Bibus (http://bibus-biblio.sourceforge.net/) is a cross platform
reference manager compatible with MS word, OpenOffice.org and Pubmed. It
also has MySQL and SQlite compatibility so the database can either be
shared on a server or directly on the local computer.

Cheers

logo









Gabriel Lapointe, M.Sc.
6651 de Lanaudière, app
3
Montréal (Québec), H2G
3B1
Cell : (514) 278-0247
gabriel.lapointe2-at-gmail.com
http://gabriellapointe.ca










logo











On Thu, 2011-02-10 at 07:26 -0600, nizets2-at-yahoo.com wrote:
}
}
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}
} Dear all,
}
} Sorry if this message is not directly related to microscopy but it is definitely
} related to scientific work.
} We are looking for asoftware to manage our scientific literature.
} Commercial reknown software like Endnote or reference manager are la creme de la
} creme but it comes to a price.
} I was wondering if a free or low-cost software could not fulfill the task as
} well.
} What we want/want not:
}
} - Possibility to share the database between numerous computers.
} - Database saved on our server, not on the internet
} - Integration with microsoft word would be nice but not necessary
} - Possibility to retrieve the references directly from Pubmed would be nice but
} not necessary
}
} I know there is a nice comparison page in wikipedia but I am a little bit
} limited to inderstand the vocabulary used (web-based and so on) and also it
} would be interesting to get the opinion of experienced users.
}
} Many thanks in advance.
}
} Stephane
}
}
}
}
}
} ==============================Original Headers==============================
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} 9, 34 -- Date: Thu, 10 Feb 2011 05:16:39 -0800 (PST)
} 9, 34 -- From: Stephane Nizet {nizets2-at-yahoo.com}
} 9, 34 -- Subject: reference manager software
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34, 40 -- Thu, 10 Feb 2011 07:30:05 -0800 (PST)
34, 40 -- Subject: Re: [Microscopy] reference manager software
34, 40 -- From: Gabriel Lapointe {gabriel.lapointe2-at-gmail.com}
34, 40 -- To: nizets2-at-yahoo.com
34, 40 -- Cc: microscopy-at-microscopy.com
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 10 Feb 2011 14:05:00 -0600
Subject: [Microscopy] viaWWW:Large Dense Core Vesicles

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Email: shervin.esfahani-at-nih.gov Name: Shervin Esfahani

Title-Subject: [Filtered] Large Dense Core Vesicles

Message: Good morning everyone,
I am currently trying to obtain good micrographs of LDCV's (large dense
core vesicles) but, have had a variety of issues when I go image them.
Ideally, the LDCV will have a distinct outer membrane, with a large,
dense and darkly stained interior. There is also a thin space between
the interior peptides and the membrane. (Hopefully this all makes sense
so far) I have been having issues where the contents inside the LDCV's
tend to shrink and shrivel up inside the membrane or, the entire LDCV is
stained so dark that there is no discernable membrane, and it resembles
a staining artifact. I have tried 4 different fixations (2.5% Glut in
Sodium Cacodylate, 4% Glut in Sodium Cacodylate, 1% Glut & 1% OsO4 in
Sodium Phosphate, and 2.5% Glut & 1% Paraformaldehyde in Sodium
Phosphate), each for 1 hr, followed by 1% OsO4 (except in the case of
the double fix), 1% Uranyl Acetate in cold/dark overnight, standard
ethanol dehydration, embedding in EMbed-812, and finally post section
staining with 1% Uranyl Acetate for 10 min (in dark), followed by Lead
Citrate staining for 2-3 min. Just wondering if anyone has any tips on
how to prevent this shrinking, or if there are any other tips on what
works best on these LDCV's. Thanks in advance!
Shervin G Esfahani
NIH/IRTA Fellow
NHLBI EM Core Facility
9000 Rockville Pike
Bethesda, Maryland 20892
301.496.6448

Opinions and experiences related are those of Shervin Esfahani and do
not represent the NIH. This message is not confidential and can be
freely shared
and reproduced.



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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 11 Feb 2011 18:41:31 -0600
Subject: [Microscopy] viaWWW:Nikon TIRF question

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Email: michael.cammer-at-med.nyu.edu Name: Michael Cammer

Organization: Skirball Institute of Biomolecular Medicine

Title-Subject: [Filtered] Nikon TIRF question

Message: Dear microscopists,

We have an issue with our TIRF system that the illumination appears much
br= ighter in the center of the field than the edges.
Example: http://www.flickr.com/photos/mcammer/5436640624/
Does anybody have tips for aligning the Nikon to avoid this?

Thank you.

Sincerely,

Michael


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 11 Feb 2011 18:43:45 -0600
Subject: [Microscopy] viaWWW:amourohous metal layer

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Email: ludo.rossou-at-ua.ac.be Name: Rossou ludo

Organization: university of Antwerp

Title-Subject: [Filtered] amourohous metal layer

Message: Dear all,

How to deposit a 100% amourphous metal layer without forming any crystals.
Now I use therrmal evaporation by resitance heating but we still have
crystals of the metal.
Sputtering gives also to much crystals.
Anybody a better idea or suggestion?

Thanks for your help!

Regards,
Ludo

ROSSOU Ludo
Universiteit Antwerpen
Dept. Fysica - EMAT
Groenenborgerlaan 171
B-2020 Antwerpen
Belgium
ludo.rossou-at-ua.ac.be
www.emat.ua.ac.be



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From: swalck-at-southbaytech.com
Date: Fri, 11 Feb 2011 20:10:36 -0600
Subject: [Microscopy] Re: viaWWW:amourohous metal layer

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You didn't say what metal that you are trying to deposit. Regardless, I can't think of any metals that will go down amorphous. Carbon will. There are some metals that will go down with very small grains and they are used for sputter deposition for high resolution SEM imaging. Some examples are Cr, Ir, W.

There may be some alloys that can be processed to be amorphous, typically by rapid queching from a melt. There are some newer amorphous alloys that the rate can be relatively slow. I have no idea whether those alloys can be deposited as a thin film in the amorphous state or not. You will have to do a search for the alloy composition of some of these materials, but I believe that most of them are 3, if not 4, or more components.

Is there some reason that you need an amorphous film? Can a fine grain film such as Ir work for you?

-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

US Toll Free: 1-800-728-2233
Tel: (949) 492-2600
Fax: (949) 492-1499

www.southbaytech.com
SWalck-at-SouthBayTech.com




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} Title-Subject: [Filtered] amourohous metal layer
}
} Message: Dear all,
}
} How to deposit a 100% amourphous metal layer without forming any
} crystals.Now I use therrmal evaporation by resitance heating but we still have
} crystals of the metal.
} Sputtering gives also to much crystals.
} Anybody a better idea or suggestion?
}
} Thanks for your help!
}
} Regards,
} Ludo
}
} ROSSOU Ludo
} Universiteit Antwerpen
} Dept. Fysica - EMAT
} Groenenborgerlaan 171
} B-2020 Antwerpen
} Belgium
} ludo.ros
} sou-at-ua.ac.bewww.emat.ua.ac.be
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From: swalck-at-southbaytech.com
Date: Fri, 11 Feb 2011 20:10:36 -0600
Subject: [Microscopy] Re: viaWWW:amourohous metal layer

Contents Retrieved from Microscopy Listserver Archives
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You didn't say what metal that you are trying to deposit. Regardless, I can't think of any metals that will go down amorphous. Carbon will. There are some metals that will go down with very small grains and they are used for sputter deposition for high resolution SEM imaging. Some examples are Cr, Ir, W.

There may be some alloys that can be processed to be amorphous, typically by rapid queching from a melt. There are some newer amorphous alloys that the rate can be relatively slow. I have no idea whether those alloys can be deposited as a thin film in the amorphous state or not. You will have to do a search for the alloy composition of some of these materials, but I believe that most of them are 3, if not 4, or more components.

Is there some reason that you need an amorphous film? Can a fine grain film such as Ir work for you?

-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

US Toll Free: 1-800-728-2233
Tel: (949) 492-2600
Fax: (949) 492-1499

www.southbaytech.com
SWalck-at-SouthBayTech.com




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} sou-at-ua.ac.be as well as the MIcroscopy Listserver
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} Email: ludo.ros
} sou-at-ua.ac.be Name: Rossou ludo
} Organization: university of Antwerp
}
} Title-Subject: [Filtered] amourohous metal layer
}
} Message: Dear all,
}
} How to deposit a 100% amourphous metal layer without forming any
} crystals.Now I use therrmal evaporation by resitance heating but we still have
} crystals of the metal.
} Sputtering gives also to much crystals.
} Anybody a better idea or suggestion?
}
} Thanks for your help!
}
} Regards,
} Ludo
}
} ROSSOU Ludo
} Universiteit Antwerpen
} Dept. Fysica - EMAT
} Groenenborgerlaan 171
} B-2020 Antwerpen
} Belgium
} ludo.ros
} sou-at-ua.ac.bewww.emat.ua.ac.be
}
}
} Login Host: 143.129.150.28
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}
}
} ==============================Original
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 14 Feb 2011 04:48:10 -0600
Subject: [Microscopy] viaWWW:Job opening: SEM academic (Assistant Prof/Associate Prof)

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Email: martin.saunders-at-uwa.edu.au Name: Martin Saunders

Organization: The University of Western Australia

Title-Subject: [Filtered] Job opening: SEM academic (Assistant
Prof/Associate Prof)

Message: The Centre for Microscopy, Characterisaton and Analysis at The
University of Western Australia is seeking suitable applicants for an
academic position (Assistant Prof/Associate Prof) to lead our scanning
electron
microscopy capability. The CMCA is a major central university facility
that supports the research-intensive role of the university, forming a
nexus for collaborative and interdisciplinary research linked to
applications of our extensive microscopy and microanalysis capabilities,
which include SEM, TEM, EPMA, ion probes, optical, confocal, flow
cytometry, cell sorting, XRD, NMR and mass spec.

The successful candidate will have a background in the application of
SEM in either the physical or biological sciences. They will be expected
to lead SEM-related activity in the Centre, including the provision of
teaching/training, developing their own research programs, establishing
collaborative and interdisciplinary research activities with local
researchers, and driving future plans for SEM capabilities at the
university.

More information on this position can be found at
https://www.his.admin.uwa.edu.au/jobvacs/external/academic/record/record1926699.html

Queries can be directed to our Centre Director (Prof David Sampson,
david.sampson-at-uwa.edu.au) or myself (martin.saunders-at-uwa.edu.au).

Regards,

Martin.


*****************************************

Professor Martin Saunders,
Deputy Director,
Centre for Microscopy, Characterisation and Analysis,
M010,
The University of Western Australia,
Crawley,
Western Australia 6009,
Australia.

Phone: +61 8 6488 8092
Fax: +61 8 6488 1087
E-mail: Martin.Saunders-at-uwa.edu.au
CRICOS Provider No. 00126G

*****************************************


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 14 Feb 2011 06:21:49 -0600
Subject: [Microscopy] viaWWW:Job Opening: TESCAN District Sales Manager, Western Region

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Email: info-at-tescan-usa.com Name: Marjorie Counihan

Organization: TESCAN USA

Title-Subject: [Filtered] Job Opening: TESCAN District Sales Manager,
Western Region

Message: TESCAN, a leading manufacturer of Scanning Electron Microscopes
and Focused Ion Beam Workstations established in 1991 is accepting
resumes for a District Sales Manager in the Silicon Valley California
region of the United States. The person chosen should be self-motivated,
independent and a team player. A technical degree and background is
required, experience with charge particle technology would be ideal.
Candidates should possess excellent communication and organizational
skills. All interested parties please submit resumes and salary
requirements to info-at-tescan-usa.com. Previous sales experience is
preferred but not necessarily required. Qualified candidates must be
able to pass criminal, and credit background checks, including drug
testing. A valid drivers License is required. TESCAN is an affirmative
action/equal opportunity employer. Please limit all correspondence to
info-at-tescan-usa.com.

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From: William.F.Tivol-at-aero.org
Date: 02/11/2011 04:54 PM
Subject: [Microscopy] viaWWW:amourohous metal layer

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Ludo,
What metal do you want to deposit? Whether you can get an
amorphous layer depends on the metal, and in many cases you can only get
crystals, although sometimes these can be nm-sized. As I remember, one
can get an amorphous layer of tungsten, but I may have that wrong. If so,
I hope someone else on the list will correct me. Since the crystal
structure usually has the lowest energy, it is difficult to get something
non-crystalline, but possibly there are alloys that do not form crystals.
Again, I hope someone else from the list will know.
Yours,
Bill



X-from: microscopylistserver-noreply-at-microscopy.com
To: William.F.Tivol-at-aero.org


How to deposit a 100% amourphous metal layer without forming any crystals.
Now I use therrmal evaporation by resitance heating but we still have
crystals of the metal.
Sputtering gives also to much crystals.
Anybody a better idea or suggestion?

Thanks for your help!

Regards,
Ludo


==============================Original Headers==============================
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From: zaluzec-at-aaem.amc.anl.gov
Date: Mon, 14 Feb 2011 14:45:19 -0600
Subject: [Microscopy] MM2011 Paper Submission Deadline Extended

Contents Retrieved from Microscopy Listserver Archives
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Colleagues,

Because of problems we have been experiencing with network congestion,
the deadline for paper submission for MM2011 has been extended to Monday
Feb 21st 11:59 PM EST.

The direct link to paper submission site is:

http://mam2011.abstractcentral.com/index.jsp

and for general information about the meeting

http://microscopy.org/MandM/2011/index.cfm

On behalf of the Society please accept my appology for the delays and
associated problems.

Nestor J. Zaluzec
President Microscopy Society of America
--

==============================Original Headers==============================
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From: FMonson-at-wcupa.edu
Date: 02/11/2011 04:54 PM
Subject: [Microscopy] viaWWW:amourohous metal layer

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

http://www.darpa.mil/dso/thrusts/materials/novelmat/naval/index.htm

So much 'Darpa' in the world. First the bomb, then the internet, now strange and amorphous metal coatings.

Cheers,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org]
Sent: Monday, February 14, 2011 12:39 PM
To: Monson, Frederick

Hi Ludo,
What metal do you want to deposit? Whether you can get an
amorphous layer depends on the metal, and in many cases you can only get
crystals, although sometimes these can be nm-sized. As I remember, one
can get an amorphous layer of tungsten, but I may have that wrong. If so,
I hope someone else on the list will correct me. Since the crystal
structure usually has the lowest energy, it is difficult to get something
non-crystalline, but possibly there are alloys that do not form crystals.
Again, I hope someone else from the list will know.
Yours,
Bill



X-from: microscopylistserver-noreply-at-microscopy.com
To: William.F.Tivol-at-aero.org


How to deposit a 100% amourphous metal layer without forming any crystals.
Now I use therrmal evaporation by resitance heating but we still have
crystals of the metal.
Sputtering gives also to much crystals.
Anybody a better idea or suggestion?

Thanks for your help!

Regards,
Ludo


==============================Original Headers==============================
9, 48 -- From prvs=019dab85a=William.F.Tivol-at-aero.org Mon Feb 14 11:29:01 2011
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==============================Original Headers==============================
22, 37 -- From FMonson-at-wcupa.edu Mon Feb 14 15:36:53 2011
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From: John.Mardinly-at-wdc.com
Date: 02/11/2011 04:54 PM
Subject: [Microscopy] viaWWW:amourohous metal layer

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html
by ns.microscopy.com (8.12.11.20060308/8.12.8) with ESMTP id p1ENCi0Z010154
for {MicroscopyListserverArchive2-at-microscopy.com} ; Mon, 14 Feb 2011 17:12:44 -0600
Received: (from mail-at-localhost)
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Most every high capacity disk drive made today, which probably includes the
one in the computer you are using right now, has one or more layers of
amorphous, magnetically soft material called "soft under layer". I cannot
disclose any detail about this material, but if you just Google "soft under
layer" or "soft under layer perpendicular recording" you can learn quite a
bit from public sources.

John Mardinly

Western Digital

-----Original Message-----
X-from: FMonson-at-wcupa.edu [mailto:FMonson-at-wcupa.edu]
Sent: Monday, February 14, 2011 1:44 PM
To: John Mardinly

http://www.darpa.mil/dso/thrusts/materials/novelmat/naval/index.htm

So much 'Darpa' in the world. First the bomb, then the internet, now
strange and amorphous metal coatings.

Cheers,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org]
Sent: Monday, February 14, 2011 12:39 PM
To: Monson, Frederick

Hi Ludo,
What metal do you want to deposit? Whether you can get an
amorphous layer depends on the metal, and in many cases you can only get
crystals, although sometimes these can be nm-sized. As I remember, one
can get an amorphous layer of tungsten, but I may have that wrong. If so,
I hope someone else on the list will correct me. Since the crystal
structure usually has the lowest energy, it is difficult to get something
non-crystalline, but possibly there are alloys that do not form crystals.
Again, I hope someone else from the list will know.
Yours,
Bill



X-from: microscopylistserver-noreply-at-microscopy.com
To: William.F.Tivol-at-aero.org


How to deposit a 100% amourphous metal layer without forming any crystals.
Now I use therrmal evaporation by resitance heating but we still have
crystals of the metal.
Sputtering gives also to much crystals.
Anybody a better idea or suggestion?

Thanks for your help!

Regards,
Ludo


==============================Original Headers==============================
9, 48 -- From prvs=019dab85a=William.F.Tivol-at-aero.org Mon Feb 14 11:29:01
2011
9, 48 -- Received: from email1-west.aero.org (email1-west.aero.org
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9, 48 -- 0-at-notes.aero.org} |Date:=20Mon,=2014=20Feb=202011=2009:28:
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31, 30 -- From prvs=0195811d7=John.Mardinly-at-wdc.com Mon Feb 14 17:12:44 2011
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From: b-myers3-at-northwestern.edu
Date: Mon, 14 Feb 2011 17:34:12 -0600
Subject: [Microscopy] RE: viaWWW:amourohous metal layer

Contents Retrieved from Microscopy Listserver Archives
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Mon, 14 Feb 2011 17:34:12 -0600

Ludo-

You could consider Osmium Coating
(http://www.2spi.com/catalog/osmi-coat.html)...again, the utility
depends on what the application is. The literature suggests this
coating is completely amorphous, but I haven't verified this myself.
However, the coating is extremely conformal and smooth - we use it
routinely for high-res SEM and it is difficult to see any texture,
whereas we can easily see grains in fine grain Au/Pd or Pt films.

Regards,
Ben Myers
NUANCE Center - Northwestern University


On 2/14/2011 5:21 PM, John.Mardinly-at-wdc.com wrote:
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} Most every high capacity disk drive made today, which probably includes the
} one in the computer you are using right now, has one or more layers of
} amorphous, magnetically soft material called "soft under layer". I cannot
} disclose any detail about this material, but if you just Google "soft under
} layer" or "soft under layer perpendicular recording" you can learn quite a
} bit from public sources.
}
} John Mardinly
}
} Western Digital
}
} -----Original Message-----
} X-from: FMonson-at-wcupa.edu [mailto:FMonson-at-wcupa.edu]
} Sent: Monday, February 14, 2011 1:44 PM
} To: John Mardinly
} Subject: [Microscopy] viaWWW:amourohous metal layer
}
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} http://www.darpa.mil/dso/thrusts/materials/novelmat/naval/index.htm
}
} So much 'Darpa' in the world. First the bomb, then the internet, now
} strange and amorphous metal coatings.
}
} Cheers,
}
} Fred Monson
}
} Frederick C. Monson, PhD
} Technical Director
} Center for Microanalysis and Imaging, Research and Training (CMIRT)
} Schmucker Science Center South
} West Chester University, West Chester, PA 19383
} 610-738-0437
}
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} -----Original Message-----
} X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org]
} Sent: Monday, February 14, 2011 12:39 PM
} To: Monson, Frederick
} Subject: [Microscopy] Re: viaWWW:amourohous metal layer
}
}
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} Hi Ludo,
} What metal do you want to deposit? Whether you can get an
} amorphous layer depends on the metal, and in many cases you can only get
} crystals, although sometimes these can be nm-sized. As I remember, one
} can get an amorphous layer of tungsten, but I may have that wrong. If so,
} I hope someone else on the list will correct me. Since the crystal
} structure usually has the lowest energy, it is difficult to get something
} non-crystalline, but possibly there are alloys that do not form crystals.
} Again, I hope someone else from the list will know.
} Yours,
} Bill
}
}
}
} X-from: microscopylistserver-noreply-at-microscopy.com
} To: William.F.Tivol-at-aero.org
} Date: 02/11/2011 04:54 PM
} Subject: [Microscopy] viaWWW:amourohous metal layer
}
}
} How to deposit a 100% amourphous metal layer without forming any crystals.
} Now I use therrmal evaporation by resitance heating but we still have
} crystals of the metal.
} Sputtering gives also to much crystals.
} Anybody a better idea or suggestion?
}
} Thanks for your help!
}
} Regards,
} Ludo
}
}
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From: tbogea-at-interchange.ubc.ca
Date: Mon, 14 Feb 2011 17:41:49 -0600
Subject: [Microscopy] Grid coating pen for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all!

We are interested in purchasing a grid coating pen to save time but we still want a stable coating under the beam. Does anyone has previous experience using one of those pens ? Is it useful or just a gadget?

Thanks again!

Tami

--
Tami Bogea PhD
Research Associate
Ophthalmology & Visual Sciences
University of British Columbia
2550 Willow St. Vancouver, BC
V5Z 3N9 Canada


==============================Original Headers==============================
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From: ehaller-at-health.usf.edu
Date: Tue, 15 Feb 2011 07:42:52 -0600
Subject: [Microscopy] Grid coating pen for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Tami,

I've used them for about 15 years now. They're great. I buy them from Electron Microscopy Sciences. I coat 4-5 grids, a drop per grid, then move the grids from the drops while they are still wet to a dry spot on my filter paper, let the grids air dry for a minute, and they are ready to use. I only coat as many as I use, and don't coat them until I'm ready to use them. I pick up my sections by coming up from under the water with my grids. I never loose sections, and the sections are always flat and wrinkle-free. The only dirt I get is if I have dirt in my boat on top of the water.

Ed

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: tbogea-at-interchange.ubc.ca [tbogea-at-interchange.ubc.ca]
Sent: Monday, February 14, 2011 6:46 PM
To: Haller, Edward

Hi all!

We are interested in purchasing a grid coating pen to save time but we still want a stable coating under the beam. Does anyone has previous experience using one of those pens ? Is it useful or just a gadget?

Thanks again!

Tami

--
Tami Bogea PhD
Research Associate
Ophthalmology & Visual Sciences
University of British Columbia
2550 Willow St. Vancouver, BC
V5Z 3N9 Canada


==============================Original Headers==============================
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From: patpxs-at-gmail.com
Date: Tue, 15 Feb 2011 08:04:51 -0600
Subject: [Microscopy] Electron Microscopy Position Available

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Listers,

Duke has an opening for an EM Technician. If you have any general
questions you can ask me.

Otherwise, please follow the directions embedded in Dr. Miller's note.

Read the description below, if interested apply at:
http://www.hr.duke.edu/jobs/

Thanks,

Paula
--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#251M, Duke South, Green Zone
Durham, North Carolina 27710
P: 919.684.2091


NOTE: DO NOT REPLY TO THIS EMAIL. SEE BELOW FOR APPLICATION ADDRESS.

Electron Microscopy Position Available
Electron Microscopy Technician, Senior

Location: Duke University Medical Center, Durham, NC

Requirements: Training and experience in running and maintaining
electron microscopes, proficiency in cutting ultrathin sections and
performing negative staining. Knowledge of scientific laboratory
operation (making solutions, ordering, typing results, keeping
records, etc.). Computer skills and research experience are a plus.

Laboratory description: The work force consists of the director and 6
EM technologists who perform pathology (500 samples/year), virology
(1000 samples/year), and research. Instruments include s3 TEMs, 1
SEM, 7 ultramicrotomes—2 with cryo attachments, plus ancillary
specimen preparation equipment.

Job descriptions available at:
https://www.hr.duke.edu/
Click “Jobs” at the top left
Under “Jobs Descriptions” click “University Job Descriptions”
Under “Browse by Job Title” click “E”
Then click “ELECTRON MICROSCOPY TECH, SR (0291)”

These descriptions are generic, and not all jobs described within
(e.g., histology) are required of the EM position.

EM Laboratory web site:
http://pathology.mc.duke.edu/website/WebForm.aspx?id=ElectronMicroMain

Send resume to:
Sara E. Miller, Ph. D.
Professor, Department of Pathology
Director, Electron Microscopy Laboratory
P. O. Box 3712
Duke University Medical Center
Durham, NC 27710

Phone: 919 684-3452
Fax: 919 684-3265
Email: saram-at-duke.edu


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From: glenmac-at-u.washington.edu
Date: Tue, 15 Feb 2011 12:19:25 -0600
Subject: [Microscopy] removing Axioplan nosepiece

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Has anyone removed the objective nosepiece from an Axioplan 2ie MOT? I think that ours stopped moving due to lubrication issues and would like to verify before sending a PO for potential parts replacements.

Thanks,
Glen


Glen MacDonald
Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
Box 357923
University of Washington
Seattle, WA 98195-7923 USA
(206) 616-4156
glenmac-at-uw.edu










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From: peto-at-salk.edu
Date: Tue, 15 Feb 2011 12:29:00 -0600
Subject: [Microscopy] TEM - request for MT-1 microtome chuck

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I am looking for a specimen holder for the Ivan Sorvall Porter-Blum
MT-1 ultramicrotome.
I need either the ball swivel collet or the MT2-to-MT1 adapter.

Thanks,
Casey Peto

Salk Institute


==============================Original Headers==============================
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4, 24 -- Subject: TEM - request for MT-1 microtome chuck
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 15 Feb 2011 14:31:54 -0600
Subject: [Microscopy] viaWWW:Annual meeting of the Southeastern Microscopy Society

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Email: CGoldsmith-at-cdc.gov Name: Cynthia Goldsmith

Organization: Southeastern Microscopy Society

Title-Subject: [Filtered] Annual meeting of the Southeastern Microscopy
Society

Message: The annual meeting of the Southeastern Microscopy Society
(SEMS) will be held May 18-20 in Decatur, Georgia, just east of Atlanta.
We will have a day and a half of presentations, and this year we are
privileged to have as invited speakers Drs. Paul Hvala, Daniela
Nicastro, Amelia Kempere, and Michael Oliveri. Students are encouraged
to submit an abstract for the Ruska Award. There is also the
opportunity to participate in a pre-meeting workshop on plunge freezing
and cryo-TEM at Emory University, a Vendors' Social on May 18, and a
banquet on May 19. Visit us at www.southeasternmicroscopy.org for
details. Please come and join us!

All microscopists in the southeast region, irrespective of discipline,
are invited and encouraged to join the Southeast Microscopy Society.
SEMS is one of the most active Local Affiliate Societies of the
Microscopy Society of America and an excellent venue for students,
technologists and faculty to share their data with and to meet other
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From: Xiaolan.Wu-at-Dartmouth.edu
Date: Tue, 15 Feb 2011 18:44:59 -0600
Subject: [Microscopy] EM radiation

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Hi All,

I am thinking about the EM radiation for an expecting monther.
Is there any policies regarding the use of SEM and TEM by pregant employees?
Thank you very much!

X


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 16 Feb 2011 05:27:39 -0600
Subject: [Microscopy] viaWWW:LKB ultratome service & manual

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Email: jegoolsby-at-hotmail.com Name: james goolsby

Organization: Paragon Bioservices

Title-Subject: [Filtered] LKB ultratome service & manual

Message: I am looking for someone who can service a LKB NOVA ultratome.

It's been sitting in a warehouse 10+years and needs some cleaning and
lubricating. Also, I would like to get the manual.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 16 Feb 2011 05:28:26 -0600
Subject: [Microscopy] viaWWW:Lysozyme proteins

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Email: kajla-at-wisc.edu Name: mayur

Organization: UW Madison

Title-Subject: [Filtered] Lysozyme
Message: Hi, i am have been trying to do immuno-EM on mosquito midguts,
fixed in 4% PFA/0.2% Glut and embedded in LR White. I know that the
lysozyme protein is supposed to be present in the midgut tissues (based
on Western blotting) but i have never been able to detect it on the
sectioned guts.
Does anybody have any experience working with lysozyme detection ?
Lysozyme is positively charged and supposed to be associated with the
midgut laminae.
thanks, mayur
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From: Nicola.Weston-at-nottingham.ac.uk
Date: Wed, 16 Feb 2011 06:09:32 -0600
Subject: [Microscopy] Reichart OM U2 ultramicrotome

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Hello everyone
Would anyone have a manual/operating instructions for the OM U2?
We have inherited a dusty old relic & I'd like to try & get it working again rather than it sitting wasted in a corner.
Many Thanks
Nikki WestonThis message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham.

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From: guenter.resch-at-imba.oeaw.ac.at
Date: Wed, 16 Feb 2011 06:30:46 -0600
Subject: [Microscopy] Re: EM radiation

Contents Retrieved from Microscopy Listserver Archives
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Hi Xiaolan,

} I am thinking about the EM radiation for an expecting monther.
} Is there any policies regarding the use of SEM and TEM by pregant
} employees? Thank you very much!

in our Facility (located in Austria) we had the pleasure to deal with
this situation a year ago.

What we found out was that with the maximum X-ray emission of our
100 and 300 kV TEMs as measured in the acceptance test (approx. 200
nSv/h), it takes an expecting mother under intensive, but realistic
working conditions more than 2 years to reach the maximum dose allowed
here by law.

To confirm this, we had both microscopes re-measured by an external,
certified expert. It turned out that close to our 100 kV machine, the
radiation level is even below environmental radiation, as the column
shields more than it emits. Subsequently, we received an official
safety clearance from the local work inspectorate for both scopes.

We also had our pregnant colleagues carry live dosimeters with them,
which we checked daily, to make sure the conditions at the microscopes
did not change.

I hope that information helps, all the best,

Guenter

--
Dr. Guenter Resch, IMP-IMBA-GMI Electron Microscopy Facility
Email: guenter.resch-at-imba.oeaw.ac.at; Web: http://cores.imp.ac.at/em
Phone: +43 (1) 79044-4250; Fax/Voice Mail: +43 (1) 79044-224250
Post: Dr. Bohr-Gasse 3, 1030 Vienna, Austria, European Union

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9, 26 -- To: {Xiaolan.Wu-at-Dartmouth.edu} , {Microscopy-at-microscopy.com}
9, 26 -- Subject: Re: [Microscopy] EM radiation
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From: I.J.Portman-at-warwick.ac.uk
Date: Wed, 16 Feb 2011 06:45:52 -0600
Subject: [Microscopy] EM radiation

Contents Retrieved from Microscopy Listserver Archives
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An EM should be checked for leaks as part of its regular servicing, and
any time the column's been taken apart so radiation from it should never
be an issue. Far more of a concern I'd say are the chemicals we
typically use in EM and which many users get complacent about handling.
We use a lot of rather nasty solvents, heavy metals and other compounds
that could be a real threat to an unborn child.
Cheers
Ian

Ian Portman
Imaging Suite Manager
School of Life Sciences
University of Warwick

http://www2.warwick.ac.uk/fac/sci/lifesci/facilities/imaging



-----Original Message-----
X-from: Xiaolan.Wu-at-dartmouth.edu [mailto:Xiaolan.Wu-at-dartmouth.edu]
Sent: 16 February 2011 00:52
To: Portman, Ian

Hi All,

I am thinking about the EM radiation for an expecting monther.
Is there any policies regarding the use of SEM and TEM by pregant
employees?
Thank you very much!

X





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From: Frank_Karl-at-lincolnelectric.com
Date: Wed, 16 Feb 2011 07:04:03 -0600
Subject: [Microscopy] EM radiation

Contents Retrieved from Microscopy Listserver Archives
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Hello Everyone,
A number of years ago we faced the same question at Goodyear and the same
issues were raised and the same answers were found. Management elected to
provide anyone who wanted to use it a lead x-ray apron. We had one scope
so on could be shared quite easily. The weight discourages all but the
most concerned.

I suspect for peace of mind and to demonstrate the goodwill of the
organization to go beyond any safety regulation to promote safety, having a
lead apron available and a short video training course on radiation would
solve all your concerns.

stay safe...
Frank



I.J.Portman-at-warwi
ck.ac.uk
To
02/16/2011 07:51 frank_karl-at-lincolnelectric.com
AM cc

Subject
Please respond to [Microscopy] RE: EM radiation
I.J.Portman-at-warwi
ck.ac.uk











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An EM should be checked for leaks as part of its regular servicing, and
any time the column's been taken apart so radiation from it should never
be an issue. Far more of a concern I'd say are the chemicals we
typically use in EM and which many users get complacent about handling.
We use a lot of rather nasty solvents, heavy metals and other compounds
that could be a real threat to an unborn child.
Cheers
Ian

Ian Portman
Imaging Suite Manager
School of Life Sciences
University of Warwick

http://www2.warwick.ac.uk/fac/sci/lifesci/facilities/imaging



-----Original Message-----
X-from: Xiaolan.Wu-at-dartmouth.edu [mailto:Xiaolan.Wu-at-dartmouth.edu]
Sent: 16 February 2011 00:52
To: Portman, Ian

Hi All,

I am thinking about the EM radiation for an expecting monther.
Is there any policies regarding the use of SEM and TEM by pregant
employees?
Thank you very much!

X





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From: david.knecht-at-uconn.edu
Date: Wed, 16 Feb 2011 07:51:02 -0600
Subject: [Microscopy] Removing stuck objectives

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

What tricks/tools do people suggest for unscrewing objectives from the turret when you cannot loosen them by hand? Thanks- Dave

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: greggps-at-umich.edu
Date: Wed, 16 Feb 2011 08:23:35 -0600
Subject: [Microscopy] Removing stuck objectives

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

David,
Buy a strap wrench. If the rubber slips on the objective barrel, use channel pliers to grab the rubber strap and turn. Don't squeeze excessively. Focus on turning with the pliers.

You may be able to use leather gloves with the pliers, but the teeth of the wrench could penetrate and cause gouges in the outer case. A small sheet of thick rubber may also work, but strap wrenches are cheap and store easily.

Good luck,
~Gregg

Gregg Sobocinski
Microscope Imaging Specialist
University of Michigan, MCDB Dept.
Ann Arbor, Michigan
USA



-----Original Message-----
X-from: david.knecht-at-uconn.edu [mailto:david.knecht-at-uconn.edu]
Sent: Wednesday, February 16, 2011 8:59 AM
To: Sobocinski, Gregg

What tricks/tools do people suggest for unscrewing objectives from the turret when you cannot loosen them by hand? Thanks- Dave

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: frah0010-at-umn.edu
Date: Wed, 16 Feb 2011 08:54:11 -0600
Subject: [Microscopy] bitumen in the SEM/EPMA?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Microscopy colleagues,

I was recently approached by two different researchers about the possibility of observing and perhaps even analyzing bitumen in our electron microprobe. I initially recoiled at the thought of putting a tar-like mixture of petroleum in the microprobe, and I informed these researchers that they probably want a technique used in organic chemistry, like gas chromatography, to analyze such a viscous mixture of organic liquids. Still the intellectual challenge remains: can bitumen be stabilized enough to observe (low beam currents) or perhaps even analyze (high beam currents) in a microprobe? I know that bitumen can be "refined" (that is, the crude oil removed), leaving behind the heaviest fraction with a higher boiling point (about 525 C). Does anyone have experience with somehow stabilizing bitumen for observation/analysis in a non-environmental SEM/EPMA? I'm curious to hear about others' experiences, either successful or not, with this.

Best,
Ellery


Ellery Frahm, Ph.D.
Manager & Principal Analyst, Electron Microprobe Laboratory
Research Associate, Department of Geology & Geophysics
University of Minnesota - Twin Cities
http://probelab.geo.umn.edu





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From: chaueter-at-bcm.edu
Date: Wed, 16 Feb 2011 09:46:42 -0600
Subject: [Microscopy] Removing stuck objectives

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I had similar problem before. A Zeiss scope guy shared me a tip- wear lab gloves to get a better grip on the objective while loosening it from the turret.

Claire

Claire Haueter
Electron Microscopy Technologist
Jan and Dan Duncan Neurological Research Institute
Howard Hughes Medical Institute
1250 Moursund Street, Suite 1125
Houston, TX 77030
Lab Phone: (832) 824-8772
EMAIL: chaueter-at-bcm.edu

________________________________________
X-from: david.knecht-at-uconn.edu [david.knecht-at-uconn.edu]
Sent: Wednesday, February 16, 2011 8:01 AM
To: Haueter, Claire Menoza

What tricks/tools do people suggest for unscrewing objectives from the turret when you cannot loosen them by hand? Thanks- Dave

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: dsherman-at-purdue.edu
Date: Wed, 16 Feb 2011 10:03:09 -0600
Subject: [Microscopy] Re: bitumen in the SEM/EPMA?

Contents Retrieved from Microscopy Listserver Archives
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Ellery,

Oil shales and other samples containing bitumin can be safely imaged using
cryoSEM. In that case the sample is frozen and you see no change in the
bitumin structure even under very intense beam. Thus amount of oil released
is presumably quite low if at all.

Oil can also be imaged safely without cryo. I drilled a very small hole in
a sample mount and filled it with oil. I then covered all with a formvar
film to seal in the oil. This held up very well under low Vacuum for EDX
analysis of the oil.

Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/


} From: "frah0010-at-umn.edu" {frah0010-at-umn.edu}
} Reply-To: "frah0010-at-umn.edu" {frah0010-at-umn.edu}
} Date: Wed, 16 Feb 2011 09:55:51 -0500
} To: Debby Sherman {dsherman-at-purdue.edu}
} Subject: [Microscopy] bitumen in the SEM/EPMA?
}
}
}
}
} ----------------------------------------------------------------------------
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}
} Microscopy colleagues,
}
} I was recently approached by two different researchers about the possibility
} of observing and perhaps even analyzing bitumen in our electron microprobe. I
} initially recoiled at the thought of putting a tar-like mixture of petroleum
} in the microprobe, and I informed these researchers that they probably want a
} technique used in organic chemistry, like gas chromatography, to analyze such
} a viscous mixture of organic liquids. Still the intellectual challenge
} remains: can bitumen be stabilized enough to observe (low beam currents) or
} perhaps even analyze (high beam currents) in a microprobe? I know that
} bitumen can be "refined" (that is, the crude oil removed), leaving behind the
} heaviest fraction with a higher boiling point (about 525 C). Does anyone have
} experience with somehow stabilizing bitumen for observation/analysis in a
} non-environmental SEM/EPMA? I'm curious to hear about others' experiences,
} either successful or not, with this.
}
} Best,
} Ellery
}
}
} Ellery Frahm, Ph.D.
} Manager & Principal Analyst, Electron Microprobe Laboratory
} Research Associate, Department of Geology & Geophysics
} University of Minnesota - Twin Cities
} http://probelab.geo.umn.edu
}
}
}
}
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 16 Feb 2011 14:56:04 -0600
Subject: [Microscopy] viaWWW:Microscopy Sales/Marketing/Applications openings

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From: FMonson-at-wcupa.edu
Date: Wed, 16 Feb 2011 15:48:14 -0600
Subject: [Microscopy] Removing stuck objectives

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I couldn't resist saying, "This is a galling problem for any seized pair of nut and bolt much less an objective and a turret. To solve the problem, first one must understand its natural roots. (http://en.wikipedia.org/wiki/Galling)

Galling as it may be, this is a problem in metallurgy and/or materials science, and, ultimately, real nano and 'elemental' science.

In either case, the easiest remedy would appear to be a life-long schedule of periodic 'flexing' of the 'bolt' in the grasp of the 'nut', and, thus, prevent the, now understood, galling consequences.

In the case of a neglected microscope objective, when galled, the objective seized within the threads of the turret illustrates a grievous form of instrumental negligence - typical, I'm embarrassed to say, of far too many of us who use and care for them.

Harsh remedies are called for, and with a strip of hard rubber (1/16" thick) wrapped around the objective and in the grasp of an appropriate pair of pliers (long handles for leverage), the turret immobilized by the left hand, and finally, the pliers (in the right!) drawn 'gently' (but inexorably) toward the operator, the objective generally succumbs to the force and will be freed. The rubber should prevent the teeth of the jaws of the pliers from 'reaching' the metal of the objective, but commodiously provide for sufficient 'grip' that the rubber can substitute as the wrench. I purchased mine in the plumbing section at Home Depot

( http://www.homedepot.com/h_d1/N-5yc1v/R-100574988/h_d2/ProductDisplay?langId=-1&storeId=10051&catalogId=10053 )

Hopeful that the previous will be helpful to many, I have become, finally, 'hic finis est'.

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: chaueter-at-bcm.edu [mailto:chaueter-at-bcm.edu]
Sent: Wednesday, February 16, 2011 10:53 AM
To: Monson, Frederick

I had similar problem before. A Zeiss scope guy shared me a tip- wear lab gloves to get a better grip on the objective while loosening it from the turret.

Claire

Claire Haueter
Electron Microscopy Technologist
Jan and Dan Duncan Neurological Research Institute
Howard Hughes Medical Institute
1250 Moursund Street, Suite 1125
Houston, TX 77030
Lab Phone: (832) 824-8772
EMAIL: chaueter-at-bcm.edu

________________________________________
X-from: david.knecht-at-uconn.edu [david.knecht-at-uconn.edu]
Sent: Wednesday, February 16, 2011 8:01 AM
To: Haueter, Claire Menoza

What tricks/tools do people suggest for unscrewing objectives from the turret when you cannot loosen them by hand? Thanks- Dave

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: FMonson-at-wcupa.edu
Date: Wed, 16 Feb 2011 16:12:46 -0600
Subject: [Microscopy] EM radiation

Contents Retrieved from Microscopy Listserver Archives
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In my experience, all safety issues are handled locally. That is, if you have a radon monitor handy, it should double as a convenient check for radiation above background. ( http://www.nukepills.com/radiation-detector.htm )$34.95 each for a card in the pocket? Individual must determine whether any device is sensitive enough.

I have tested 25 year old analytic x-ray equipment in addition to my 2002 FEI Quanta and Tecnai with not one example of radiation detection above background in areas well away from the instruments.

Please note that the chemicals (especially the heavy metals) used in biologic microscopy constitute the largest proportion of the hazard in a laboratory environment. Vacuum pump oils (are oils), specimens that are poorly characterized or sterilized. Yesterday's killed viral specimen spill and/or aerosol.

Thus, in the end, the issue of safety comes down to personal requirements of the employed, the impact on the normal tasks for which there are no substitutes, and institutional policy and, more important, hard evidence of NO hazard in the work place in question.

Pretty sure none of the above will improve the situation or completely answer the question.

How much more or less hazardous is a walk in the park than a day in the lab. I would not choose to be the one to say.

Regards,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: Xiaolan.Wu-at-Dartmouth.edu [mailto:Xiaolan.Wu-at-Dartmouth.edu]
Sent: Tuesday, February 15, 2011 7:53 PM
To: Monson, Frederick

Hi All,

I am thinking about the EM radiation for an expecting monther.
Is there any policies regarding the use of SEM and TEM by pregant employees?
Thank you very much!

X


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From: nizets2-at-yahoo.com
Date: Thu, 17 Feb 2011 07:26:51 -0600
Subject: [Microscopy] EM radiation

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

well actually the short video course on radiation should definitely demonstrate
the uselessness of a lead apron in this case!
So to summary: as long as the radiation has been regularly tested, it is safe to
work with TEM for a pregnant women. Actually much safer than to take
intercontinental flights.
I would just avoid to stay in front of the sample holder aperture while the beam
is on (even without being pregnant)...

regards,

Stephane


----- Original Message ----
X-from: "Frank_Karl-at-lincolnelectric.com" {Frank_Karl-at-lincolnelectric.com}
To: nizets2-at-yahoo.com
Sent: Wed, February 16, 2011 2:06:56 PM

Hello Everyone,
A number of years ago we faced the same question at Goodyear and the same
issues were raised and the same answers were found.  Management elected to
provide anyone who wanted to use it a lead x-ray apron.  We had one scope
so on could be shared quite easily.  The weight discourages all but the
most concerned.

I suspect for peace of mind and to demonstrate the goodwill of the
organization to go beyond any safety regulation to promote safety, having a
lead apron available and a short video training course on radiation would
solve all your concerns.

stay safe...
Frank


                                                                         
            I.J.Portman-at-warwi                                           
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An EM should be checked for leaks as part of its regular servicing, and
any time the column's been taken apart so radiation from it should never
be an issue. Far more of a concern I'd say are the chemicals we
typically use in EM and which many users get complacent about handling.
We use a lot of rather nasty solvents, heavy metals and other compounds
that could be a real threat to an unborn child.
Cheers
Ian

Ian Portman
Imaging Suite Manager
School of Life Sciences
University of Warwick

http://www2.warwick.ac.uk/fac/sci/lifesci/facilities/imaging



-----Original Message-----
X-from: Xiaolan.Wu-at-dartmouth.edu [mailto:Xiaolan.Wu-at-dartmouth.edu]
Sent: 16 February 2011 00:52
To: Portman, Ian

Hi All,

I am thinking about the EM radiation for an expecting monther.
Is there any policies regarding the use of SEM and TEM by pregant
employees?
Thank you very much!

X





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From: jfmjfm-at-umich.edu
Date: Thu, 17 Feb 2011 09:20:32 -0600
Subject: [Microscopy] EM radiation

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

OK, we have found, after extensive testing (over the last 15 years) that if you have an instrument that was bought after 1987 (when the oldest of ours, that we tested, was purchased) and it has only been modified by either the manufacturer or had ancillary equipment added to it by one of the XEDS companies or Gatan, or the like, that there is absolutely MINIMAL leakage of radiation from the instruments.
For the past 15 years we have had radiation badges located permanently next to the microscopes right where the operator sits. these badges are developed every three months and replaced. The three oldest sets of badges, one on our JEOL 2010F (was on the JEOL 2000FX when we had it), one on our FEI SEM and one in my office show the following exposures:


Last 3 Months Year to Date (July to June) Lifetime (Since 1995)
JEOL 2010F {10mrem {10mrem 78mrem
FEI XL30FEG {10mrem {10mrem 133mrem
Office Monitor {10mrem {10mrem 21 mrem

These numbers are from Landauer (www.landauerinc.com) and are listed as "Dose Equivalent"
Office monitor is line of site to one of the few windows in the basement, assume it is cosmic ray readings that make it higher, but that is just a guess.
Annual exposure limits, according to Landauer, are 5,000mrem for the body and organs and 50,000 for extremities and skin.
General Public should expect to see 100mrem/year

So, as far as I can see, our sensors have indicated that we are getting about the level that Jo and Joe Average see in the streets.
We still encourage anyone who is worried, or thinks they might be pregnant, or wanting to become pregnant, to get and wear a dosimeter when ever operating the instruments. We do not mandate dosimeters, neither does the University or the State of Michigan.


Hope this helps.


--
John Mansfield PhD Cphys MInstP
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
Phone: (734) 936-3352 FAX (734) 763-2282
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15, 20 -- Subject: Re: [Microscopy] Re: EM radiation
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From: FMonson-at-wcupa.edu
Date: Wed, 16 Feb 2011 15:55:33
Subject: [Microscopy] Removing stuck objectives

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ah yes! With all due respect, and no sarcasm intended, because I am a firm believer in "this method DID work in my hands".

However, of the following I am reminded at every mention of 'oil' and 'objective'.

In the late 1960's, one of my professors purchased a new Leitz Ortholux with Orthomat camera and fluorescence.
On the day that the sale's person had finished setting the scope up, he and the professor went to lunch. When they returned, the professor tried the instrument and could not see a thing when he brought the oil immersion objective into play. After brief discussion the sale's person unscrewed the objective and inverted it to check the face of the lens. As he peered thru the reversed ocular, he felt something on his hand and discovered that the inverted objective was relieving its internals of a full load of what appeared to be immersion oil. It turned out that the professor's senior graduate student - having no experience with either advance English, translated German or research microscopes had sat at the scope and misunderstood what was meant by "oiling the oil immersion objective".

Since I understand how vexing the problem of a seized objective can be, I would only relate that in my 40 years of experience with such advanced microscopies as were available to me, I have never permitted 'creepy' oil to be placed near or on any part of the optical tube - except between the face lens of the oil immersion objective and the slide and between the slide and the upper element (when available) of the substage condenser.

Equivocation: I never intrude on another professional's methods as long as s/he is not using an instrument for which I have responsibility or is personal equipment. Thus, in the case of this suggestion by J. Ladd (with a preeminent last name), I would not presume to call his method wrong in any other person's hands but my own.

Cheers,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: jladd-at-temple.edu [mailto:jladd-at-temple.edu]
Sent: Wednesday, February 16, 2011 5:44 PM
To: Monson, Frederick

I couldn't resist saying, "This is a galling problem for any seized pair of nut and bolt much less an objective and a turret. To solve the problem, first one must understand its natural roots. (http://en.wikipedia.org/wiki/Galling)

Galling as it may be, this is a problem in metallurgy and/or materials science, and, ultimately, real nano and 'elemental' science.

In either case, the easiest remedy would appear to be a life-long schedule of periodic 'flexing' of the 'bolt' in the grasp of the 'nut', and, thus, prevent the, now understood, galling consequences.

In the case of a neglected microscope objective, when galled, the objective seized within the threads of the turret illustrates a grievous form of instrumental negligence - typical, I'm embarrassed to say, of far too many of us who use and care for them.

Harsh remedies are called for, and with a strip of hard rubber (1/16" thick) wrapped around the objective and in the grasp of an appropriate pair of pliers (long handles for leverage), the turret immobilized by the left hand, and finally, the pliers (in the right!) drawn 'gently' (but inexorably) toward the operator, the objective generally succumbs to the force and will be freed. The rubber should prevent the teeth of the jaws of the pliers from 'reaching' the metal of the objective, but commodiously provide for sufficient 'grip' that the rubber can substitute as the wrench. I purchased mine in the plumbing section at Home Depot

( http://www.homedepot.com/h_d1/N-5yc1v/R-100574988/h_d2/ProductDisplay?langId=-1&storeId=10051&catalogId=10053 )

Hopeful that the previous will be helpful to many, I have become, finally, 'hic finis est'.

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: chaueter-at-bcm.edu [mailto:chaueter-at-bcm.edu]
Sent: Wednesday, February 16, 2011 10:53 AM
To: Monson, Frederick

I had similar problem before. A Zeiss scope guy shared me a tip- wear lab gloves to get a better grip on the objective while loosening it from the turret.

Claire

Claire Haueter
Electron Microscopy Technologist
Jan and Dan Duncan Neurological Research Institute
Howard Hughes Medical Institute
1250 Moursund Street, Suite 1125
Houston, TX 77030
Lab Phone: (832) 824-8772
EMAIL: chaueter-at-bcm.edu

________________________________________
X-from: david.knecht-at-uconn.edu [david.knecht-at-uconn.edu]
Sent: Wednesday, February 16, 2011 8:01 AM
To: Haueter, Claire Menoza

What tricks/tools do people suggest for unscrewing objectives from the turret when you cannot loosen them by hand? Thanks- Dave

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: GPoirier-at-mus-nature.ca
Date: Fri, 18 Feb 2011 14:20:07 -0600
Subject: [Microscopy] basic SDD for SEM

Contents Retrieved from Microscopy Listserver Archives
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Hello listers,

I'd like to add x-ray capabilities to our XL-30 SEM. As we already have an electron microprobe, I'm looking for a basic SDD system for mineral identification. If anyone has any recommendations (or non-recommendations) they would like to share I'd love to hear them. I'd be happy to hear form vendors too.
Thanks for the help,



Glenn Poirier



Earth Science / Science de la Terre
Research Services
Canadian Museum of Nature
Musée canadien de la nature
t.613.364.4088 f.613.364.4027 www.nature.ca



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From: stefan.diller-at-t-online.de
Date: Sat, 19 Feb 2011 07:33:01 -0600
Subject: [Microscopy] Philips 525 motorized stage - pc control software

Contents Retrieved from Microscopy Listserver Archives
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Dear All,
has anybody tried to programm a pc-based user-interface to move the 6 inch motorized stage of a Philips 525 SEM?
I would be very fond to have a programm where I can set up the X, Y and rotation movement on the stage and save these
instructions like in a timeline window for later automatic "replay".
At least a small programm would be good to send stage positions and rotation values to the stage, for a first step...
I have all the infos on the hardware and the stage software as PDFs,if needed.

Best wishes,
Stefan

--
-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
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Websites:
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From: david.knecht-at-uconn.edu
Date: Sat, 19 Feb 2011 15:05:59 -0600
Subject: [Microscopy] Re: Removing stuck objectives

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I want to thank you all for your suggestions and report back. I put WD-40 on the threads with a plastic q-tip, waited a while, then used a small strap wrench (Harbor Freight Tools) and I was able to get them all loose. Thanks- Dave

On Feb 16, 2011, at 1:48 PM, Louis Kerr wrote:

} I have used soft jaw pliers for this type of thing. I remove the other objectives and then use the least amount of pressure necessary and don't try too hard! I bought the pliers from this source:
} http://www.garrettwade.com/slip-joint-soft-jaw-pliers/p/94P04.01/
}
} For some stuff I have taken the locked together items (no objectives) to our machine shop and they tighten the outer item in the proper sized colletchuck in the metal lathe. They work it free by hand and simply use the lathe as a stationary method to hold the items.
}
} Hope it helps,
} Louie
}
} From: "david knecht" {david.knecht-at-uconn.edu}
} To: lkerr-at-mbl.edu
} Sent: Wednesday, February 16, 2011 8:52:05 AM
} Subject: [Microscopy] Removing stuck objectives
}
}
}
}
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}
} What tricks/tools do people suggest for unscrewing objectives from the turret when you cannot loosen them by hand? Thanks- Dave
}
} Dr. David Knecht
} Department of Molecular and Cell Biology
} Co-head Flow Cytometry and Confocal Microscopy Facility
} U-3125
} 91 N. Eagleville Rd.
} University of Connecticut
} Storrs, CT 06269
} 860-486-2200
} 860-486-4331 (fax)
}
}
}
}
} ==============================Original Headers==============================
} 5, 24 -- From david.knecht-at-uconn.edu Wed Feb 16 07:51:02 2011
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}
} --
} Louis Kerr
} lkerr-at-mbl.edu
}
} Research and Education Support Coordinator
} Marine Biological Laboratory
} 7 MBL Street
} Woods Hole, MA 02543
} 508-289-7273
} 508-540-6902 (FAX)
} 508-292-0289 (Cell phone)
}
} VISIT OUR WEB SITES:
} www.mbl.edu
} www.courses.mbl.edu
}
}

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 19 Feb 2011 17:23:58 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:Immunoflourescence

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Email: susan.trant-at-viha.ca Name: Sue Trant

Organization: Vancouver Island Health Authority

Title-Subject: [Filtered] Immunoflourescence

Message: For some time we have been experiencing an intermittent but
frequent intraepidermal fishnet staining pattern with all
immunoreactants. Normally this is diagnostic of pemphigus. It can be
seen in burn patients. Pemphigus is a rare disease. This artifact
staining is occuring in about 50% or more of our current DIF (direct
immunoflourescence) cases where there is no history suggestive of pemphigus.

I have not changed any of our antibodies, antibody dilutions, wash
solutions, transport media. The skin control slides are not staining
with this pattern. The renal biopsies that are being stained at the same
time are not showing this staining problem nor are the renal controls.

Does anyone have a suggestion as to why this is happening? What antibody
manufacturer do others use?

Thanks in advance
Sue Trant
EM Technologist
Vancouver Island Health Authority
Victoria, British Columbia
Canada


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 19 Feb 2011 17:24:33 -0600
Subject: [Microscopy] viaWWW:Hitachi H7600 beam stop for CCD Camera

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Email: dhorne-at-interchange.ubc.ca Name: Derrick Horne

Organization: UBC BioImaging Facility

Title-Subject: [Filtered] Hitachi H7600 beam stop for CCD Camera

Message: I'm looking for a beam stop to use with our Hitachi H7600 and a
side mount AMT camera.

Might anyone have one with which they are willing to part?

Thanks in advance

Derrick

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 19 Feb 2011 17:25:10 -0600
Subject: [Microscopy] viaWWW:Zeiss EM 10 manuals

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Email: sc-at-nanoct.com.ar Name: Silvio Cechet

Organization: NanoCT

Title-Subject: [Filtered] Zeiss EM 10 manuals

Message: Hi all,
I rescued an old Zeiss Em 10. It is not working , but I found the
operation instructions, care and maintenance. Unfortunately I didnÂ’t
find any electronic and electricals manual. Can someone help me?
Thanks in advance

Silvio Cechet

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From: stefan.diller-at-t-online.de
Date: Sun, 20 Feb 2011 04:08:06 -0600
Subject: [Microscopy] Re: viaWWW:Zeiss EM 10 manuals

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Silvio,
I do have all the manuals in PDF in German language. Contact me offline. It would be best to know what kind of EM10 (A, B,C, CR)
you have. I also have spare parts, if you need and can provide help attaching modern digital cameras including read-out of
magnification and HV-values from the scope.

Best wishes,
Stefan

-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 20.02.11 00:29, schrieb microscopylistserver-noreply-at-microscopy.com:
} ----------------------------------------------------------------------------
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} replying please copy both sc-at-nanoct.com.ar as well as the MIcroscopy
} Listserver
} ---------------------------------------------------------------------------
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} Email: sc-at-nanoct.com.ar Name: Silvio Cechet
}
} Organization: NanoCT
}
} Title-Subject: [Filtered] Zeiss EM 10 manuals
}
} Message: Hi all,
} I rescued an old Zeiss Em 10. It is not working , but I found the
} operation instructions, care and maintenance. Unfortunately I didnÂ’t
} find any electronic and electricals manual. Can someone help me?
} Thanks in advance
}
} Silvio Cechet
}
} Login Host: 190.230.130.164
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
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From: Philip.Koeck-at-ki.se
Date: Mon, 21 Feb 2011 08:07:38 -0600
Subject: [Microscopy] TEM: object distance

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Hi,

I have a rather technical question concerning TEM imaging.

In the weak phase object approximation (for high resolution imaging
of thin biological specimens) one assumes that the back focal plane
contains the Fourier transform of the exit wave.
According to Fourier optics (e.g. in Goodman) this is only strictly
true if the object is placed in the front focal plane (moving the
image plane to infinity). Otherwise one has to deal with additional
quadratic phase factors.

My question: How close to the front focal plane is the object plane
in a properly aligned Tem (when imaging at about 1000 nm underfocus)?
Is it close enough to approximate the diffraction pattern by a simple FT
without extra phase factors?
If I assume a magnification of about 50, then the lens law gives me a ratio
of about 1.02 between the object distance and the focal length. Does that
seem reasonable?

Philip


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From: vitalylazar-at-att.net
Date: Mon, 21 Feb 2011 12:54:40 -0600
Subject: [Microscopy] Re: viaWWW:Hitachi H7600 beam stop for CCD Camera -

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Commercial reply.

SIA offers beam stop for side mounted TEM cameras as part of SIA TEM
camera systems or as a stand-alone upgrade. For all JEOL, Hitachi, and
Zeiss models.

(Philips/FEI TEMs have factory-installed beam stop above side port)

Vitaly Feingold
SIA
2773 Heath Lane
Duluth GA 30096
Ph. 770-232-7785
Fax 770-232-1791
www.sia-cam.com
vitaly-at-sia-cam.com

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} Title-Subject: [Filtered] Hitachi H7600 beam stop for CCD Camera
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From: joelsheffield-at-gmail.com
Date: Mon, 21 Feb 2011 21:33:35 -0600
Subject: [Microscopy] Re: viaWWW:Large Dense Core Vesicles

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Hi Shervin,

I notice that you do not mention the salt concentrations in any of the
fixation protocols you list. It is possible that by changing either
the salt or the pH concentration, you could get some changes in the
morphology of the vesicles. You might also leave out the poststain
with UA, and see what that gets you.
Joel



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} Email: shervin.esfahani-at-nih.gov Name: Shervin Esfahani
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} Title-Subject: [Filtered] Large Dense Core Vesicles
}
} Message: Good morning everyone,
} I am currently trying to obtain good micrographs of LDCV's (large dense
} core vesicles) but, have had a variety of issues when I go image them.
} Ideally, the LDCV will have a distinct outer membrane, with a large,
} dense and darkly stained interior. There is also a thin space between
} the interior peptides and the membrane. (Hopefully this all makes sense
} so far) I have been having issues where the contents inside the LDCV's
} tend to shrink and shrivel up inside the membrane or, the entire LDCV is
} stained so dark that there is no discernable membrane, and it resembles
} a staining artifact. I have tried 4 different fixations (2.5% Glut in
} Sodium Cacodylate, 4% Glut in Sodium Cacodylate, 1% Glut & 1% OsO4 in
} Sodium Phosphate, and 2.5% Glut & 1% Paraformaldehyde in Sodium
} Phosphate), each for 1 hr, followed by 1% OsO4 (except in the case of
} the double fix), 1% Uranyl Acetate in cold/dark overnight, standard
} ethanol dehydration, embedding in EMbed-812, and finally post section
} staining with 1% Uranyl Acetate for 10 min (in dark), followed by Lead
} Citrate staining for 2-3 min. Just wondering if anyone has any tips on
} how to prevent this shrinking, or if there are any other tips on what
} works best on these LDCV's. Thanks in advance!
} Shervin G Esfahani
} NIH/IRTA Fellow
} NHLBI EM Core Facility
} 9000 Rockville Pike
} Bethesda, Maryland 20892
} 301.496.6448
}
} Opinions and experiences related are those of Shervin Esfahani and do
} not represent the NIH. This message is not confidential and can be
} freely shared
} and reproduced.
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--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
jbs-at-temple.edu
(215) 204 8839, fax (215) 204 0486
http://astro.temple.edu/~jbs


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 22 Feb 2011 19:21:04 -0600
Subject: [Microscopy] viaWWW:Postdoctoral Position in Lehigh University

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Email: shm7-at-lehigh.edu Name: Shuailei

Organization: CAMN, Lehigh University

Title-Subject: [Filtered] A Postdoctoral Position in Lehigh University

Message: A postdoctoral position is available immediately in the Center
for Advanced Materials and Nanotechnology (CAMN) in Lehigh University.
The successful candidate will focus on studying the grain boundary
structure/chemistry in ceramics as well as metals using FIB, HRTEM,
Cs-corrected STEM, EDS and EELS. The position requires a Ph. D. in
materials science or related discipline. Hands on experience with
aberration corrected STEM is desired and knowledge of FIB is preferred.
This position is open until filled.

Applications with a cover letter and curriculum vitae should be sent to
Prof. Martin P. Harmer
Director, CAMN
Lehigh University
5 E. Packer Ave.
Bethlehem, PA 18015
mph2-at-lehigh.edu

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 22 Feb 2011 19:21:52 -0600
Subject: [Microscopy] viaWWW:fib gallium sources

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Email: ech-at-uvic.ca Name: Elaine Humphrey

Organization: University of Victoria

Title-Subject: [Filtered] fib gallium sources

Message: We are almost ready to replace our gallium source for our fib.
The quote we have is double the last time we changed the source and we
thought the last quote was big. It means the cost of using a fib must
include the consumables which works out to be around Can$17/hr and when
we change the source it will go up to Can$35/hr. The consumables being
the LMIS source (the gallium), the GA aperture set, metal O ring and
lower apertures.

When I checked on the web the price of gallium has almost doubled in the
last year which is presumably why the consumables are going up.

Can the fib users let me know what their consumables cost and how much
they charge their users please? Has anyone come up with a more
reasonable solution to this problem? I'm not sure yet what my users will
be willing to pay but this will be a shock to them.

many thanks
Elaine



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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 22 Feb 2011 19:22:47 -0600
Subject: [Microscopy] viaWWW:Nitrogen by EDS

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Email: tomw-at-uidaho.edu Name: Tom Williams

Organization: University of Idaho

Title-Subject: [Filtered] Nitrogen by EDS

Message: Greetings.

A colleague is attempting Nitrogen analysis by SEM/EDS and is having
trouble detecting the N peak. Apparently no issue with O and C. I have
little experience with N and was hoping others might have some helpful
insight to any issues specific to N analysis?? Of course, I am assuming
the problem isn't that his samples have no N to begin with!

Any suggestions would be welcome and appreciated.

Tom


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 22 Feb 2011 19:24:15 -0600
Subject: [Microscopy] viaWWW:Job Opening: TESCAN District Sales Manager, Midwest Region

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Title-Subject: [Filtered] Job Opening: TESCAN District Sales Manager,
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From: Woody.White-at-areva.com
Date: Wed, 23 Feb 2011 06:41:41 -0600
Subject: [Microscopy] viaWWW:Nitrogen by EDS

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Sensitivity to nitrogen by EDS is not great. Even with a low kV beam to
reduce analysis depth and little carbon in the matrix, you must still
contend with attenuation from the carbon present in most EDS thin
windows.

To maximize detectability use a low kV beam (5 kV?) and tilt the sample
to skew the analysis volume along the surface, minimizing penetration.
A windowless or ultra thin detector window should be used. For most
matrix compositions, standardless quantitation is pretty much useless
under these conditions. Using a standard under similar operating
conditions and no normalization will increase the odds of good quant.

Woody

N.W. (Woody) White Jr.
Senior Electron Microscopist
Chemistry and Materials Center
AREVA NP Inc
An AREVA and Siemens Company
Lynchburg, VA
Lab Phone: 434.832.3004

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Email: tomw-at-uidaho.edu Name: Tom Williams

Organization: University of Idaho

Title-Subject: [Filtered] Nitrogen by EDS

Message: Greetings.

A colleague is attempting Nitrogen analysis by SEM/EDS and is having
trouble detecting the N peak. Apparently no issue with O and C. I have
little experience with N and was hoping others might have some helpful
insight to any issues specific to N analysis?? Of course, I am assuming
the problem isn't that his samples have no N to begin with!

Any suggestions would be welcome and appreciated.

Tom


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 23 Feb 2011 08:56:06 -0600
Subject: [Microscopy] Re: viaWWW:Nitrogen by EDS

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Tom,

The C in the window of the detector absorbs the N K X-rays. Most
detectors of this type can do B about as efficiently as N. There's not
much you can do about it.

Lew Rabenberg


On Feb 22, 2011, at 7:24 PM, microscopylistserver-
noreply-at-microscopy.com wrote:

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} Email: tomw-at-uidaho.edu Name: Tom Williams
}
} Organization: University of Idaho
}
} Title-Subject: [Filtered] Nitrogen by EDS
}
} Message: Greetings.
}
} A colleague is attempting Nitrogen analysis by SEM/EDS and is having
} trouble detecting the N peak. Apparently no issue with O and C. I
} have
} little experience with N and was hoping others might have some helpful
} insight to any issues specific to N analysis?? Of course, I am
} assuming
} the problem isn't that his samples have no N to begin with!
}
} Any suggestions would be welcome and appreciated.
}
} Tom
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 23 Feb 2011 08:56:32 -0600
Subject: [Microscopy] Re: viaWWW:Nitrogen by EDS

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Inorganic nitrogen is much easier to detect than organic nitrogen. There
needs to be a lot (I can't quantify this, just a lot) of organic nitrogen
present to detect with EDS. He could try running a standard of know
nitrogen that would be comparable to his sample, if it exists. Running a
Carbon, Hydrogen, Nitrogen analysis available in most chemistry departments
would be a better way to determine nitrogen than EDS.

Emily McKimmy

On Tue, Feb 22, 2011 at 8:33 PM, {
microscopylistserver-noreply-at-microscopy.com} wrote:

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} Email: tomw-at-uidaho.edu Name: Tom Williams
}
} Organization: University of Idaho
}
} Title-Subject: [Filtered] Nitrogen by EDS
}
} Message: Greetings.
}
} A colleague is attempting Nitrogen analysis by SEM/EDS and is having
} trouble detecting the N peak. Apparently no issue with O and C. I have
} little experience with N and was hoping others might have some helpful
} insight to any issues specific to N analysis?? Of course, I am assuming
} the problem isn't that his samples have no N to begin with!
}
} Any suggestions would be welcome and appreciated.
}
} Tom
}
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From: jehrman-at-mta.ca
Date: Wed, 23 Feb 2011 09:36:48 -0600
Subject: [Microscopy] viaWWW:Nitrogen by EDS

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The old edition of Goldstein et al. (which I stupidly, stupidly gave
away!) had a nifty table of mass absorption coefficients in the
Appendices. The value for carbon as an absorbent of N x-rays (as I
recall) was something ridiculously high, like 25000. I had always
assumed this was the root cause for not being able to see a nitrogen
peak in organic samples. Am I wrong?

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
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email: jehrman-at-mta.ca
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Why be difficult? Put some effort in and be impossible.





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From: John.Mardinly-at-wdc.com
Date: Wed, 23 Feb 2011 11:37:31 -0600
Subject: [Microscopy] President Obama at the helm of a Titan!

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www.katu.com/news/business/116508808.html

http://photos.oregonlive.com/photo-essay/2011/02/photo_essay_president_barac
k_o.html


John Mardinly
Western Digital



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 23 Feb 2011 17:45:54 -0600
Subject: [Microscopy] viaWWW:cryosubstitution

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Email: csuarez000-at-gmail.com Name: Anna

Organization: Heidelberg University

Title-Subject: [Filtered] cryosubstitution

Message: Dear Colleguaes;

I am working in viral morphogenisis focused into viral membranes. I
would like if any of yours has experience in cryosubsitution of infected
cells with acetone/methanol using like cryoprotectan saccharose/glycerol
and if there are any incompatibility between them. Other people told me
that the saccharose is precipitated during the cryosubstitution if you
use methanol and the other possibility is to use methanol but this one
is no good membrane preservatived. Thanks so much for your time

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 23 Feb 2011 17:46:38 -0600
Subject: [Microscopy] viaWWW:X-Ray filament?

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Email: rfoley-at-uab.edu Name: Robin Foley

Organization: UAB

Title-Subject: [Filtered] X-Ray filament?

Message: All,

We're trying to find a tungsten filament for an syburg 160 kv microfocus
x-ray tube. Syburg no longer exists. Does anyone know of someone who
would retip a tungsten filament for an x-ray tube? Or, do you know of
anyone that sells tungsten filaments for the tube. Note: this is a
fancy x-ray tube that is turbo-pumped (not a static vacuum, replace the
entire thing tube).


Thanks,
Robin Foley

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From: William.F.Tivol-at-aero.org
Date: 02/21/2011 06:20 AM
Subject: [Microscopy] TEM: object distance

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Dear Philip,
Usually one puts the specimen at the eucentric height by tilting
the stage, so that puts the specimen at the tilt axis, which may or may
not be in the front focal plane. Since, when the stage is installed, its
position is set by a mechanical adjustment, I think that the precision
with which it can be aligned with the front focal plane is on the order of
micrometers. Furthermore, the eucentric height is determined to a
precision of tens of nanometers (or at least that's the best that I can
do). Once the difference between the stage axis and the front focal plane
has been measured, then one can position the specimen in that plane with a
precision of tens of nm by setting the eucentric height, and then
adjusting z to get to the front focal plane. I do not know whether one
can easily measure the distance from the stage tilt axis to the front
focal plane. I also do not know the effect of changing the objective lens
current to image at a particular value of the defocus, although I expect
it will shift the focal planes. A quick run through the formulas 1/I +
1/O = 1/f , and I/O = M does give ~1.02.
Yours,
Bill



X-from: Philip.Koeck-at-ki.se
To: William.F.Tivol-at-aero.org


I have a rather technical question concerning TEM imaging.

In the weak phase object approximation (for high resolution imaging
of thin biological specimens) one assumes that the back focal plane
contains the Fourier transform of the exit wave.
According to Fourier optics (e.g. in Goodman) this is only strictly
true if the object is placed in the front focal plane (moving the
image plane to infinity). Otherwise one has to deal with additional
quadratic phase factors.

My question: How close to the front focal plane is the object plane
in a properly aligned Tem (when imaging at about 1000 nm underfocus)?
Is it close enough to approximate the diffraction pattern by a simple FT
without extra phase factors?
If I assume a magnification of about 50, then the lens law gives me a
ratio
of about 1.02 between the object distance and the focal length. Does that
seem reasonable?


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From: tomas.hrncir-at-tescan.cz
Date: Thu, 24 Feb 2011 06:26:24 -0600
Subject: [Microscopy] Re: viaWWW:fib gallium sources

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Thu, 24 Feb 2011 06:26:24 -0600

Elaine,
such costs of FIB consumables seem to be enormously high. I just did a
rough estimate for our FIB instruments (Tescan Lyra and Vela) -
exchange of Ga source and column apertures by our US branch will be
around 10000$, together with the serviceman transport and working time
(assuming there is no service contract). Lifetime of our Ga source is
longer than 1500 hours at 2 uA emission current, longer than 3000 hours
at 1 uA emission current. Therefore in the worst case we obtain maximum
ion beam costs less than 7$/hour, in the best case the running costs
will be less than 4$/hour.
I do not think that the price of Ga source was doubled because of
doubled price of Ga on world markets. You need just negligible amount
of Ga for one source.
Definitely your supplier seems to be a sly businessman :-).
Good luck,
Tomas

--
Tomas Hrncir, Ph.D.
R&D - Physics http://www.tescan.cz
Tescan +420 547130468 | tomas.hrncir-at-tescan.cz
Libusina trida 21 | 623 00 Brno | Czech Republic


} Email: ech-at-uvic.ca Name: Elaine Humphrey
}
} Organization: University of Victoria
}
} Title-Subject: [Filtered] fib gallium sources
}
} Message: We are almost ready to replace our gallium source for our
} fib. The quote we have is double the last time we changed the source
} and we thought the last quote was big. It means the cost of using a
} fib must include the consumables which works out to be around Can
} $17/hr and when we change the source it will go up to Can$35/hr. The
} consumables being the LMIS source (the gallium), the GA aperture set,
} metal O ring and lower apertures.
}
} When I checked on the web the price of gallium has almost doubled in
} the last year which is presumably why the consumables are going up.
}
} Can the fib users let me know what their consumables cost and how much
} they charge their users please? Has anyone come up with a more
} reasonable solution to this problem? I'm not sure yet what my users
} will be willing to pay but this will be a shock to them.
}
} many thanks
} Elaine

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 24 Feb 2011 07:54:50 -0600
Subject: [Microscopy] viaWWW:N by EDS: Many Thanks

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Email: tomw-at-uidaho.edu Name: Tom Williams

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Title-Subject: [Filtered] N by EDS: Many Thanks

Message: Greeting all.

Wanted to take a moment to thank all the members for the useful
suggestions and assistance with my Nitrogen question. I have forwarded
the responses to my friend.

Again, many thanks.

Tom


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 24 Feb 2011 19:15:24 -0600
Subject: [Microscopy] viaWWW:Cold stages for VP-SEM

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Email: dhorne-at-interchange.ubc.ca Name: Derrick Horne

Organization: UBC BioImaging Facility

Title-Subject: [Filtered] Cold stages for VP-SEM

Message: With the aim of trying to maximise the use of our Hitachi S2600
VP-SEM, I am trying to source a used/refurbished cold stage and a
chamberscope. I am partial to the Deben stages but am open to other choices.

I am even open to exploring the idea of having a student in
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Regards,

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 24 Feb 2011 19:16:22 -0600
Subject: [Microscopy] viaWWW:Adhering Thin Films to Grids

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Email: gv54-at-drexel.edu Name: Greg Vetterick

Organization: Drexel University

Title-Subject: [Filtered] Adhering Thin Films to Grids

Message: Hello all,

I'm currently trying to attach free standing 50nm-100nm metallic films
to grids for TEM. My current method is to dip the grid in Gatan G-1
epoxy, wipe off the excess, then attach it to the film and cure.

My problem is that the viscosity of the G-1 epoxy is such that I often
find that my grid spaces have been filled with epoxy.

Does anyone have experience thinning G-1 with a solvent?
For a longer term fix, does anyone have suggestions for alternate
epoxies or prep methods? I am intending to heat these in-situ ( {~600C).

Thank you in advance,

-Greg


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From: swalck-at-southbaytech.com
Date: Thu, 24 Feb 2011 19:38:13 -0600
Subject: [Microscopy] viaWWW:Adhering Thin Films to Grids

Contents Retrieved from Microscopy Listserver Archives
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When I attach Tripod Polished samples onto a grid, I use Epo-Tek 353ND epoxy
that has very similar properties to G1. I use tabbed grids because they are
easier to handle. I bend the tab a little so that when I hold them by the
tab with tweezers, they will be held parallel to the horizontal. I put a
small amount of epoxy on the grid using a very fine sable brush (000, I
think) and then blot the excess off with filter paper that is lying flat
under my stereomicroscope and holding the grid with the tweezers. I blot it
off until I get a very thin layer. Then while still holding the tabbed grid
with the tweezers, I touch the grid to the sample and try not to move it in
a shearing motion. If your mesh isn't too high, this should work for you
too. Different filter paper blots it differently.

I have also noticed that acetone can clean the uncured epoxy from stuff that
I get it on accidently, so it might thin it for you too.


-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

eMail: SWalck-at-SouthBayTech.com
Phone: 949-492-2600
Toll Free: 1-800-728-2233 (USA)
Fax: 949-492-1499

www.SouthBayTech.com



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Email: gv54-at-drexel.edu Name: Greg Vetterick

Organization: Drexel University

Title-Subject: [Filtered] Adhering Thin Films to Grids

Message: Hello all,

I'm currently trying to attach free standing 50nm-100nm metallic films
to grids for TEM. My current method is to dip the grid in Gatan G-1
epoxy, wipe off the excess, then attach it to the film and cure.

My problem is that the viscosity of the G-1 epoxy is such that I often
find that my grid spaces have been filled with epoxy.

Does anyone have experience thinning G-1 with a solvent?
For a longer term fix, does anyone have suggestions for alternate
epoxies or prep methods? I am intending to heat these in-situ ( {~600C).

Thank you in advance,

-Greg


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==============================Original Headers==============================
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From: colijn.1-at-osu.edu
Date: Thu, 24 Feb 2011 19:44:44 -0600
Subject: [Microscopy] Re: viaWWW:Adhering Thin Films to Grids

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greg,

Why do you need epoxy? Have you tried just picking up the thin film on
the grid? I've never needed to use anything to hold a
electron-transparent thin film on a TEM grid. The van der Waals forces
should hold it quite firmly.

Cheers,
Henk

At 2/24/2011 8:17 PM, microscopylistserver-noreply-at-microscopy.com wrote:
}
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} Email:gv54-at-drexel.edu Name: Greg Vetterick
}
} Organization: Drexel University
}
} Title-Subject: [Filtered] Adhering Thin Films to Grids
}
} Message: Hello all,
}
} I'm currently trying to attach free standing 50nm-100nm metallic films
} to grids for TEM. My current method is to dip the grid in Gatan G-1
} epoxy, wipe off the excess, then attach it to the film and cure.
}
} My problem is that the viscosity of the G-1 epoxy is such that I often
} find that my grid spaces have been filled with epoxy.
}
} Does anyone have experience thinning G-1 with a solvent?
} For a longer term fix, does anyone have suggestions for alternate
} epoxies or prep methods? I am intending to heat these in-situ ( {~600C).
}
} Thank you in advance,
}
} -Greg
}
}
} Login Host: 129.25.36.109
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
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From: Jerzy.Gazda-at-ceriumlabs.com
Date: Thu, 24 Feb 2011 20:32:15 -0600
Subject: [Microscopy] viaWWW:Adhering Thin Films to Grids

Contents Retrieved from Microscopy Listserver Archives
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You could try M-BOND-610 available from various EM suppliers. It is quite thin (less viscous than water) and should not form a film between the grids. You might want to blot it if there is too much. Long time ago when we did large quantity of hand-preps, I was shown/taught to breathe/exhale on the wet epoxy to make it stay put and tacky, just one slow AHH... apparently the moisture helps, or it might just be therapeutic.

Also it can be completely removed with Acetone when uncured if you overdo the application. I use 10-15 sec at 135°C fast cure, but it will cure at lower temperatures.

Hope this helps,

Jerzy
***************************************************
Jerzy Gazda Ph.D.
Section Manager - TEM, FIB, SEM
Cerium Laboratories LLC
5204 E. Ben White Blvd. MS-512
Austin, TX 78741

(512) 934-5185 vm


www.ceriumlabs.com


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Email: gv54-at-drexel.edu Name: Greg Vetterick

Organization: Drexel University

Title-Subject: [Filtered] Adhering Thin Films to Grids

Message: Hello all,

I'm currently trying to attach free standing 50nm-100nm metallic films
to grids for TEM. My current method is to dip the grid in Gatan G-1
epoxy, wipe off the excess, then attach it to the film and cure.

My problem is that the viscosity of the G-1 epoxy is such that I often
find that my grid spaces have been filled with epoxy.

Does anyone have experience thinning G-1 with a solvent?
For a longer term fix, does anyone have suggestions for alternate
epoxies or prep methods? I am intending to heat these in-situ ( {~600C).

Thank you in advance,

-Greg


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From: benada-at-biomed.cas.cz
Date: Fri, 25 Feb 2011 01:43:33 -0600
Subject: [Microscopy] Re: viaWWW:Adhering Thin Films to Grids

Contents Retrieved from Microscopy Listserver Archives
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Hello,
There is a method for making "sticky grids". I have learned it from a book "Electron Microscopy
in Molecular Biology", page 4, IRL Press, Oxford, Washington DC, 1987:
"... Spread out acetone-cleaned grids on filter paper, place a drop of an adhesive solution on
each and allow to dry. The solution is either 1% polybutene in xylen or it is made by dissolving
the adhesive from 5 cm of transparent sticky tape in 10 ml of ethylene dichloride. ..."

We are making the adhesive solution by dissolving adhesive from 5 cm of Scotch Magic tape No.
810. (The green one). It is important to use a glass vial and a glass Pasteur pipette. It works
well for carbon support films and Pt/C replicas.

I hope it might work for you, too.

Best regards Oldrich

------------------
Oldrich Benada
Institute of Microbiology AS CR, v.v.i.
Videnska 1083
Prague 4
Czech Republic




On Friday 25 of February 2011 02:17:59 you wrote:
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} Email: gv54-at-drexel.edu Name: Greg Vetterick
}
} Organization: Drexel University
}
} Title-Subject: [Filtered] Adhering Thin Films to Grids
}
} Message: Hello all,
}
} I'm currently trying to attach free standing 50nm-100nm metallic films
} to grids for TEM. My current method is to dip the grid in Gatan G-1
} epoxy, wipe off the excess, then attach it to the film and cure.
}
} My problem is that the viscosity of the G-1 epoxy is such that I often
} find that my grid spaces have been filled with epoxy.
}
} Does anyone have experience thinning G-1 with a solvent?
} For a longer term fix, does anyone have suggestions for alternate
} epoxies or prep methods? I am intending to heat these in-situ ( {~600C).
}
} Thank you in advance,
}
} -Greg
}
}
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From: stefan.diller-at-t-online.de
Date: Fri, 25 Feb 2011 02:32:25 -0600
Subject: [Microscopy] Jeol 840 manuals

Contents Retrieved from Microscopy Listserver Archives
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Dear All,
anybody out there who has the Operating Instructions and the Technical Manual of the Jeol 840 as PDFs?
I would be very fond of getting a copy.

Thanks,
Stefan


--
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Websites:
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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Fri, 25 Feb 2011 12:20:50 -0600
Subject: [Microscopy] Adhering Thin Films to Grids

Contents Retrieved from Microscopy Listserver Archives
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to this topic raised by Greg from Drexel University

} Title-Subject: [Filtered] Adhering Thin Films to Grids

} I'm currently trying to attach free standing 50nm-100nm metallic films
} to grids for TEM. My current method is to dip the grid in Gatan G-1
} epoxy, wipe off the excess, then attach it to the film and cure.
}
} My problem is that the viscosity of the G-1 epoxy is such that I often
} find that my grid spaces have been filled with epoxy.
}
} Does anyone have experience thinning G-1 with a solvent?
} For a longer term fix, does anyone have suggestions for alternate
} epoxies or prep methods? I am intending to heat these in-situ ( {~600C).

As Henk wrote - why not picking it up directly? with or without
glow-discharge?

for biological samples, we adher Carbon films (metallic, too) with a thickness
of say 10 or 20 nm onto Copper grids (usually, 400 or even 600 mesh).
Our current method (and this is done by many): evaporate a thin carbon layer
onto freshly cleaved mica. Evaporation: either from a Carbon /graphite rod in a
vacuum coater (with a high current), or by electron beam evaporation. This
carbon film floats off on water, the water is then lowered (carefully), until
the film is covering some 20 or 50 grids (depending on the size of the mica).
Before we put the naked Copper grids into the water, we hydrophilize them by
20-secs-glow-discharge (clean, no chemistry; and convenient). - Finally, the
copper grids with the carbon film are air-dried, often baked for 2 hours at 120
or 140°C. - Usually, the carbon film adhers nicely to the grids. for us, this
works fine, and is fairly easy. (We do not use polybutene or other adhesive, as
suggested by Oldrich).
or you may try to attach your 50-100-nm-metallic-films onto carbon-coated
grids, and the carbon provides some "stickyness"? or Formvar-coated films,
again frequently used in biology?
BTW: we also attach Pt/C-replicas (1.5nm), backed with Carbon (10 to 15 nm),
directly from a water-surface onto hydrophilized (glow-discharge), otherwise
uncoated, untreated copper grids (700 mesh) - since many years, with success.
Air-dry (25°C). They stick. For ever.

kind regards,
Reinhard

--
Prof. Dr. Reinhard Rachel
Universitaet Regensburg
Centre for EM / Anatomy
Faculty for Biology&Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
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From: jae5-at-lehigh.edu
Date: Fri, 25 Feb 2011 14:43:33 -0600
Subject: [Microscopy] TEM object distance etc

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

My apologies for being slow to respond to this post but here are some
observations which may help.

The back focal plane is the Fourier transform of the front focal plane.
But this does not mean that you have to use those planes in order to
get the Fourier transform. If the sample is fairly close to (but not
in) the front focal plane, there will be a plane fairly close to (but
not in) the back focal plane that is the Fourier transform of the exit
wave from the sample.

So, whether the sample is in the front focal plane or not, the question
is then, how do you locate the right plane?

The other thread to the story is related to the eucentric height. It is
easy to set the sample to the eucentric height but not easy to know if
the eucentric height is at the front focal plane. This is addressed in
the work of one of my students long ago: 'Skew Thoughts on Parallelism'
K. K. Christenson and J. A. Eades Ultramicroscopy 26 (1988) 113-132
That paper includes a recipe (using a crystalline sample) for finding
the true back focal plane, and hence the true front focal plane and thus
a means to set the eucentric height to match the front focal plane.

However, you may not wish to adjust the height of the eucentric height
of your stage and you will come to no harm leaving it where it is. So
set your sample to the eucentric height (front focal plane or not) and
then find the plane which is the Fourier transform by spreading the
illumination wide (at the sample). Find the place where the direct beam
is as sharp as possible: that is where the diffraction pattern is the
Fourier transform of the sample exit wave.

In fact, you can be even more flexible. As long as the beam is somewhat
spread at the sample I think that the plane in which the incident beam
is a sharp spot will be a Fourier transform. (I hope someone whose math
is slicker than mine will confirm this.) The problem with doing things
in this haphazard way is that you do not know the camera length. Those
of us who work (or in my case worked) with crystals tend to have
calibrations built in, but if you work with non-crystalline materials
you will need to calibrate the camera length under the precise
conditions you use.

--
...........
Alwyn Eades
Department of Materials Science and Engineering
Lehigh University
5 East Packer Avenue
Bethlehem
Pennsylvania 18015-3195
Phone 610 758 4231
Fax 610 758 4244
jae5-at-lehigh.edu

In reply to:

I have a rather technical question concerning TEM imaging.

In the weak phase object approximation (for high resolution imaging
of thin biological specimens) one assumes that the back focal plane
contains the Fourier transform of the exit wave.
According to Fourier optics (e.g. in Goodman) this is only strictly
true if the object is placed in the front focal plane (moving the
image plane to infinity). Otherwise one has to deal with additional
quadratic phase factors.

My question: How close to the front focal plane is the object plane
in a properly aligned Tem (when imaging at about 1000 nm underfocus)?
Is it close enough to approximate the diffraction pattern by a simple FT
without extra phase factors?
If I assume a magnification of about 50, then the lens law gives me a
ratio
of about 1.02 between the object distance and the focal length. Does that
seem reasonable?



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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 26 Feb 2011 10:31:55 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:Question for university facility

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Email: rfoley-at-uab.edu Name: Robin D Foley

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Title-Subject: [Filtered] Hall of Shame - Student Users

Message: Question for university facility managers -

Yesterday, on my very old SEM, a student user accidentally engaged the
lock on the tilt. When the stage would not tilt, he decided to force it
and snapped off the 5 mm diameter steel rod that you move to tilt the
stage. He REALLY had to force it to cause this to happen. I'm sort of
wondering if he beat it with a hammer - but I don't see any signs of
that sort of damage!

What response do all of you take when someone screws up like this? How
do you prevent it?

Also, what kind of training do you give your students prior to letting
them loose on an SEM? We're about to replace our SEM with a new one
with lots of features. I'm trying to get a feel for what normal
training practices are and what works and doesn't work in your facility.
I've had two incidents similar to this in a year (steel valve bent at
45 degrees on sputter coater), and it seems like too many. I might need
some improvements in my training methods!

Thanks,

Robin Foley

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From: jae5-at-lehigh.edu
Date: Sat, 26 Feb 2011 11:06:26 -0600
Subject: [Microscopy] Re: [Filtered] MicroscopyListserverviaWWW:Question for

Contents Retrieved from Microscopy Listserver Archives
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When I was running a facility, I always tried to be patient with the
perpetrators of such events. Even the best of us did dumb things when
learning and this is part of their education - to become people who will
not mess up in the future. If you control them too tightly, they will
never learn. After all, science comes from people willing to do things
that have not been done before.

In our lab one extreme case involved a student drilling a hole into the
chamber of an SEM - while it was running.

The hard part of the whole deal is convincing those responsible for
funding that this is OK. And convincing yourself that this is OK even
when the instrument damaged is a new and expensive one.

Alwyn Eades


On 2/26/2011 11:37 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Email: rfoley-at-uab.edu Name: Robin D Foley
}
} Organization: UAB
}
} Title-Subject: [Filtered] Hall of Shame - Student Users
}
} Message: Question for university facility managers -
}
} Yesterday, on my very old SEM, a student user accidentally engaged the
} lock on the tilt. When the stage would not tilt, he decided to force it
} and snapped off the 5 mm diameter steel rod that you move to tilt the
} stage. He REALLY had to force it to cause this to happen. I'm sort of
} wondering if he beat it with a hammer - but I don't see any signs of
} that sort of damage!
}
} What response do all of you take when someone screws up like this? How
} do you prevent it?
}
} Also, what kind of training do you give your students prior to letting
} them loose on an SEM? We're about to replace our SEM with a new one
} with lots of features. I'm trying to get a feel for what normal
} training practices are and what works and doesn't work in your facility.
} I've had two incidents similar to this in a year (steel valve bent at
} 45 degrees on sputter coater), and it seems like too many. I might need
} some improvements in my training methods!
}
} Thanks,
}
} Robin Foley
}
} Login Host: 138.26.80.163
} ---------------------------------------------------------------------------
}
}
}
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--
Alwyn Eades
Lehigh University


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From: kraftpiano-at-gmail.com
Date: Sat, 26 Feb 2011 11:42:05 -0600
Subject: [Microscopy] SEM Prep: Sputter coater target material selection?

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I am trying to find a balance between usefulness and price in getting a new target for my Hummer II sputter coater. I am looking at the various compositions of targets, and there is a huge price difference between them. Would I be able to successfully use a Pt/Pd target instead of an Au/Pd target? What are the primary concerns- has anyone had experience using targets other than Au/Pd?

Thank you,

Justin A. Kraft

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From: ZZhang-at-uwyo.edu
Date: Sat, 26 Feb 2011 11:54:53 -0600
Subject: [Microscopy] Re: [Filtered] MicroscopyListserverviaWWW:Question for

Contents Retrieved from Microscopy Listserver Archives
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I agree with Alwyn that "doing dumb things" is part of the education. As facility directors/managers, however, I believe it is our job to teach/train our users to do as few "dumb things" as possible, especially when these "dumb things" have a big consequence. It is costly to repair, and prevents other people doing research (the other important mission of the facilities).

We have a written policy that if a student damages an instrument due to improper operation, the PI has to agree to pay for the repair (if any). Even education is not free and we all learned that part.

With that said, we always try to teach students beforehand, to avoid any unnecessary damages to the instrument. One thing we always tell the students is the "two fingers rule" - Nothing on the instrument (TEM, SEM, confocal) requires forces greater than what your two fingers can handle. If you cannot open/close anything with your two fingers, STOP. That works pretty well, in most of the circumstances.

Hope this helps,

Zhaojie

Zhaojie Zhang, director
Jenkins Microscopy Facility
University of Wyoming


________________________________________
X-from: jae5-at-lehigh.edu [jae5-at-lehigh.edu]
Sent: Saturday, February 26, 2011 10:09 AM
To: Z.J. Zhang

When I was running a facility, I always tried to be patient with the
perpetrators of such events. Even the best of us did dumb things when
learning and this is part of their education - to become people who will
not mess up in the future. If you control them too tightly, they will
never learn. After all, science comes from people willing to do things
that have not been done before.

In our lab one extreme case involved a student drilling a hole into the
chamber of an SEM - while it was running.

The hard part of the whole deal is convincing those responsible for
funding that this is OK. And convincing yourself that this is OK even
when the instrument damaged is a new and expensive one.

Alwyn Eades


On 2/26/2011 11:37 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Organization: UAB
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} Title-Subject: [Filtered] Hall of Shame - Student Users
}
} Message: Question for university facility managers -
}
} Yesterday, on my very old SEM, a student user accidentally engaged the
} lock on the tilt. When the stage would not tilt, he decided to force it
} and snapped off the 5 mm diameter steel rod that you move to tilt the
} stage. He REALLY had to force it to cause this to happen. I'm sort of
} wondering if he beat it with a hammer - but I don't see any signs of
} that sort of damage!
}
} What response do all of you take when someone screws up like this? How
} do you prevent it?
}
} Also, what kind of training do you give your students prior to letting
} them loose on an SEM? We're about to replace our SEM with a new one
} with lots of features. I'm trying to get a feel for what normal
} training practices are and what works and doesn't work in your facility.
} I've had two incidents similar to this in a year (steel valve bent at
} 45 degrees on sputter coater), and it seems like too many. I might need
} some improvements in my training methods!
}
} Thanks,
}
} Robin Foley
}
} Login Host: 138.26.80.163
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--
Alwyn Eades
Lehigh University


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From: Bryan.Tracy-at-spansion.com
Date: Sat, 26 Feb 2011 12:17:53 -0600
Subject: [Microscopy] Boron Nitride EDS Windows (available?)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

I was wondering who owns the rights to Boron Nitride EDS windows?
Are they available by special order?
We would much prefer to trade Carbon transmission for Nitrogen/Titanium transmission.

I remember that our old Kevex BN window was excellent in this regard.

thanks a lot!

bryan tracy
Spansion, Sunnyvale


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 26 Feb 2011 14:43:20 -0600
Subject: [Microscopy] viaWWW:RE: Question for university facility

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Email: Michael.Cammer-at-med.nyu.edu Name: Michael Cammer

Organization: Skirball Langone NYU Med Center

Title-Subject: [Filtered] RE: [Microscopy] Question for university facility

Message: All the examples given in this exchange so far, snapping the
steel rod, bending a valve on a sputter coater, and drilling a hole in
an SEM are cases of the intentional application of force. Do students
really need to be told not to do this as part of training? Have we
descended so low in our contemporary spoon-feeding educational system?
Maybe so. Make this a part of the training.

I can list a few stupid mistakes I've made and many I've seen others
make, but the actions reported here, no matter how destructive in their
results, were the intentional application of brute force by novices who
should have known better.

There was an exchange here a few weeks ago about how to unstick a locked
objective. If the result after the exchange was a broken objective, it
was done 1.) after substantial recommendations from experts who had
successfully solved the same problem and 2.) by the expert who is
supposed to maintain the instruments and as part of his/her job
description takes on these risks/responsibilities.

No facility users should be reconfiguring software in the adminstrator
account, rewiring devices, or applying crowbars to stuck metal parts.
_________________________________________
Michael Cammer, Assistant Research Scientist
Skirball Institute of Biomolecular Medicine
Lab: (212) 263-3208 Cell: (914) 309-3270

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From: dsherman-at-purdue.edu
Date: Sat, 26 Feb 2011 15:31:30 -0600
Subject: [Microscopy] Re: for university facility

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Robin,

I have been teaching microscopy and managing/directing a good sized
service/multi-user EM facility for over 20 years (additional time as a user
or service provider in smaller facilities). I am very happy to say that in
that period we have had extremely few user accidents. I attribute that to
three major reasons:
1) good training for all users before they are given their flying license.
2) support by facility staff to assist, answer questions, continue to
train/educate on a routine basis.
3) A certain amount of fear that users can loose access privileges if they
misuse instruments/break rules/do not respect other users.

(1) requires offering (and requiring) courses where students learn basic
theory and hands-on use of major instrumentation....during which they are
instructed in both what to do and what not to do. If you are not willing to
put in the time required to train/educate users than you and the instruments
will run into problems at some point. It all starts from learning correctly
in the beginning with the emphasis on good habits, sufficient understanding
to make good choices, and thus get good results. Users training users is
problematic in my experience, as bad habits get passed on and magnified over
time.

2) A good relationship between facility staff and users results in users who
are not hesitant to ask for help. This means knowing your users, showing an
interest in them and their projects and offering assistance when asked. You
will quickly learn who needs some additional help along the way and who can
work truly independently.

3) I don't apologize for this one. Facility rules are there for a reason.
Down instruments due to user error affect many and that is unfair. The
primary rule I have always enforces is that users to do not attempt to fix
anything at any time. What seems simple often is a sign of much more
significant problems that can be averted if the staff knows about them and
responds accordingly. Failure to follow this rule results in much closer
scrutiny and potential loss of privileges (rarely necessary).

All users may not perform at the same level but that does not mean that all
cannot learn to use instruments with respect for the instrument and their
fellow users. Part of our jobs as facility staff is to teach, train, and
support to insure that this happens. We may not be 100% successful, but the
number and severity of incidents will decrease significantly as a result.

Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy




On 2/26/11 11:33 AM, "microscopylistserver-noreply-at-microscopy.com"
{microscopylistserver-noreply-at-microscopy.com} wrote:

}
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}
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} Email: rfoley-at-uab.edu Name: Robin D Foley
}
} Organization: UAB
}
} Title-Subject: [Filtered] Hall of Shame - Student Users
}
} Message: Question for university facility managers -
}
} Yesterday, on my very old SEM, a student user accidentally engaged the
} lock on the tilt. When the stage would not tilt, he decided to force it
} and snapped off the 5 mm diameter steel rod that you move to tilt the
} stage. He REALLY had to force it to cause this to happen. I'm sort of
} wondering if he beat it with a hammer - but I don't see any signs of
} that sort of damage!
}
} What response do all of you take when someone screws up like this? How
} do you prevent it?
}
} Also, what kind of training do you give your students prior to letting
} them loose on an SEM? We're about to replace our SEM with a new one
} with lots of features. I'm trying to get a feel for what normal
} training practices are and what works and doesn't work in your facility.
} I've had two incidents similar to this in a year (steel valve bent at
} 45 degrees on sputter coater), and it seems like too many. I might need
} some improvements in my training methods!
}
} Thanks,
}
} Robin Foley
}
} Login Host: 138.26.80.163
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
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From: ron.doole-at-materials.ox.ac.uk
Date: Sun, 27 Feb 2011 10:46:04 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:Question for university facility

Contents Retrieved from Microscopy Listserver Archives
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Dear Robin,

You have had a good set of responses and the importance of patience and practical, hands on, teaching cannot be overemphasised. One piece of advice I would give is never to bawl out your user no matter how 'stupid' they have been. They must be completely confident to come to you to explain exactly how the damage occurred, if they are scared of you they will hide the damage (if possible) or not admit what happened. You are then in a worse position of discovering the problem some time later and not knowing how it occurred.

Of course rules are important, particularly users not making modifications to operating proceedures, software or hardware without authorisation, and ultimately withdrawing the access rights of someone who blatently disregards rules must be used to protect the research programs of the other users.

Our remit as a university is education and research, everyone has to learn how to treat instrumentation properly and this will occasionally result in damage, use those occasions to educate.

Regards,
Ron

Mr. Ron Doole Department of Materials
Senior Instrumentation Engineer. University of Oxford.
Phone +44 (0) 1865 273701 Parks Road. Oxford. OX1 3PH
Fax +44 (0) 1865 283333 ron.doole-at-materials.ox.ac.uk
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Email: rfoley-at-uab.edu Name: Robin D Foley

Organization: UAB

Title-Subject: [Filtered] Hall of Shame - Student Users

Message: Question for university facility managers -

Yesterday, on my very old SEM, a student user accidentally engaged the
lock on the tilt. When the stage would not tilt, he decided to force it
and snapped off the 5 mm diameter steel rod that you move to tilt the
stage. He REALLY had to force it to cause this to happen. I'm sort of
wondering if he beat it with a hammer - but I don't see any signs of
that sort of damage!

What response do all of you take when someone screws up like this? How
do you prevent it?

Also, what kind of training do you give your students prior to letting
them loose on an SEM? We're about to replace our SEM with a new one
with lots of features. I'm trying to get a feel for what normal
training practices are and what works and doesn't work in your facility.
I've had two incidents similar to this in a year (steel valve bent at
45 degrees on sputter coater), and it seems like too many. I might need
some improvements in my training methods!

Thanks,

Robin Foley

Login Host: 138.26.80.163
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From: lcgould-at-med.cornell.edu
Date: Sun, 27 Feb 2011 14:10:02 -0600
Subject: [Microscopy] for university facility

Contents Retrieved from Microscopy Listserver Archives
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I heartily agree with Debby-
I too have run a Core Facility for } 20 years, and was a primary user of a Core at another institution before that. I modeled my rules after the ones at that institution. They are, like Debby's few but strict:
EVERYONE who wishes to use an instrument, must be trained by Facility staff. NO second-hand training is allowed for the reasons Debby mentioned.
ALL problems should be reported to me immediately so that I can address them.
Use of the Facility is a privilege, and privileges can be suspended if a user is repeatedly guilty of not following rules & instructions or is found to have mistreated an instrument.

I have, on occasion, informed at PI that person X in his/her lab would not be given independent access to a particular instrument because, after training, I did not have confidence that the person would be able to work independently.

I have been fortunate. In 23 years, I have experienced only minor use-generated problems with any of the instruments in my 2 facilities (EM and Optical Microscopy). I did have to send the motorized stage on my LM out for repair because users had repeatedly tried to drive it past its limit because they were not attentive to what they were doing. I was able to narrow it down to a very small handful of possible miscreants....all of whom denied doing anything wrong (of course). I told all my users how much the repair cost, and that if I had to send the part out again for the same repair, I would divide the cost evenly among the labs who used that particular microscope. This did seem to put them on notice and there have been no new signs of abuse.

Strict training (I give my confocal users a minimum of 4 hours...usually 6)and clearly written instructions go a long way to insuring long-life for your instrument.
Good luck,
Lee

On 02/26/11, dsherman-at-purdue.edu wrote:

} ----------------------------------------------------------------------------
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} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html (http://www.microscopy.com/MicroscopyListserver/FAQ.html)
} ----------------------------------------------------------------------------
}
} Robin,
}  
} I have been teaching microscopy and managing/directing a good sized
} service/multi-user EM facility for over 20 years (additional time as a user
} or service provider in smaller facilities). I am very happy to say that in
} that period we have had extremely few user accidents.  I attribute that to
} three major reasons:
} 1) good training for all users before they are given their flying license.
} 2) support by facility staff to assist, answer questions, continue to
} train/educate on a routine basis.
} 3) A certain amount of fear that users can loose access privileges if they
} misuse instruments/break rules/do not respect other users.
}
} (1) requires offering (and requiring) courses where students learn basic
} theory and hands-on use of major instrumentation....during which they are
} instructed in both what to do and what not to do. If you are not willing to
} put in the time required to train/educate users than you and the instruments
} will run into problems at some point. It all starts from learning correctly
} in the beginning with the emphasis on good habits, sufficient understanding
} to make good choices, and thus get good results.  Users training users is
} problematic in my experience, as bad habits get passed on and magnified over
} time.
}
} 2) A good relationship between facility staff and users results in users who
} are not hesitant to ask for help.  This means knowing your users, showing an
} interest in them and their projects and offering assistance when asked. You
} will quickly learn who needs some additional help along the way and who can
} work truly independently.
}
} 3) I don't apologize for this one. Facility rules are there for a reason.
} Down instruments due to user error affect many and that is unfair. The
} primary rule I have always enforces is that users to do not attempt to fix
} anything at any time. What seems simple often is a sign of much more
} significant problems that can be averted if the staff knows about them and
} responds accordingly. Failure to follow this rule results in much closer
} scrutiny and potential loss of privileges (rarely necessary).
}
} All users may not perform at the same level but that does not mean that all
} cannot learn to use instruments with respect for the instrument and their
} fellow users. Part of our jobs as facility staff is to teach, train, and
} support to insure that this happens. We may not be 100% successful, but the
} number and severity of incidents will decrease significantly as a result.
}
} Debby
}
} ---
} Debby Sherman, Director               Phone: 765-494-6666
} Life Science Microscopy Facility      FAX:  765-494-5896
} Purdue University                     E-mail: dsherman-at-purdue.edu
} S-052 Whistler Building
} 170 S. University Street
} West Lafayette, IN 47907
} http://www.ag.purdue.edu/facilities/microscopy (http://www.ag.purdue.edu/facilities/microscopy)
}
}
}
}
} On 2/26/11 11:33 AM, "microscopylistserver-noreply-at-microscopy.com"
} {microscopylistserver-noreply-at-microscopy.com} wrote:
}
} }
} }
} }
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} } Email: rfoley-at-uab.edu Name: Robin D Foley
} }
} } Organization: UAB
} }
} } Title-Subject: [Filtered] Hall of Shame - Student Users
} }
} } Message: Question for university facility managers -
} }
} } Yesterday, on my very old SEM, a student user accidentally engaged the
} } lock on the tilt.  When the stage would not tilt, he decided to force it
} } and snapped off the 5 mm diameter steel rod that you move to tilt the
} } stage.  He REALLY had to force it to cause this to happen.  I'm sort of
} } wondering if he beat it with a hammer - but I don't see any signs of
} } that sort of damage!
} }
} } What response do all of you take when someone screws up like this? How
} } do you prevent it?
} }
} } Also, what kind of training do you give your students prior to letting
} } them loose on an SEM?  We're about to replace our SEM with a new one
} } with lots of features.  I'm trying to get a feel for what normal
} } training practices are and what works and doesn't work in your facility.
} }    I've had two incidents similar to this in a year (steel valve bent at
} } 45 degrees on sputter coater), and it seems like too many.  I might need
} } some improvements in my training methods!
} }
} } Thanks,
} }
} } Robin Foley
} }
} }    Login Host: 138.26.80.163
} } ---------------------------------------------------------------------------
} }
} }
} }  
} } ==============================Original Headers==============================
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} } 2011
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} ==============================Original Headers==============================
} 15, 30 -- From dsherman-at-purdue.edu Sat Feb 26 15:31:30 2011
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--
Lee Cohen-Gould, M.S., C.E.M.T.
Sr. Staff Associate in Biochemistry and
Cell & Developmental Biology
Director, Electron Microscopy & Histology
and Optical Microscopy Core Facilities                       
 Weill Cornell Medical College

voice  (212)746-6146
fax (212)746-8175
http://www.med.cornell.edu/research/rea_sup/
http://www.cornellbiochemistry.org
http://www.cornellcelldevbiology.org





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From: FMonson-at-wcupa.edu
Date: Sun, 27 Feb 2011 18:16:28 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:Question for university facility

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Robin,
I will add, only briefly, the answer to your critical question. How to prevent?

I have a relatively new ESEM which has a serious software quirk, and it can manifest it no matter who is operating. The consequence is that the stage rises at its greatest velocity until it collides with the Backscatter detector - usually deforming it . We know, after a few years, how to activate the glitch, but I will not teach THAT! Instead, I have over the years adopted the following instructional routine which has alleviated the consequence for the many undergraduates who have been trained. I am obdurate in the sequence of startup steps that establish a safety net for the BSD. All have taken to that sequence, because it makes sense, and, because I make clear the cost of deviating from it - i.e.,a new BSD at just under $10,000.00. We have had 4 or 5 replaced, but none lately.

The other thing I do during all training sessions is to tell the trainee everything I have been able to think of that can harm the instrument. I also have a yellow printout on the wall, which all have to read, so that they know that I have glitches as well and neglect to instruct ALL who do not specifically request an understanding of how to activate and use the 'stage clamp' - thus improving the possibility of acquiring high res images of 'fine' structure.

I suspect that in the case of the tilt bar, you have given us a unique - how the h.... did he do that? The cure is to make clear that as old as your SEM is, it responds to brute force as does any gentle soul. It breaks!

My sympathy for the effort that will be required to repair an old system.

Cheers,

Fred Monson
http://cmirt.wcupa.edu

________________________________________
X-from: ron.doole-at-materials.ox.ac.uk [ron.doole-at-materials.ox.ac.uk]
Sent: Sunday, February 27, 2011 11:54 AM
To: Monson, Frederick

Dear Robin,

You have had a good set of responses and the importance of patience and practical, hands on, teaching cannot be overemphasised. One piece of advice I would give is never to bawl out your user no matter how 'stupid' they have been. They must be completely confident to come to you to explain exactly how the damage occurred, if they are scared of you they will hide the damage (if possible) or not admit what happened. You are then in a worse position of discovering the problem some time later and not knowing how it occurred.

Of course rules are important, particularly users not making modifications to operating proceedures, software or hardware without authorisation, and ultimately withdrawing the access rights of someone who blatently disregards rules must be used to protect the research programs of the other users.

Our remit as a university is education and research, everyone has to learn how to treat instrumentation properly and this will occasionally result in damage, use those occasions to educate.

Regards,
Ron

Mr. Ron Doole Department of Materials
Senior Instrumentation Engineer. University of Oxford.
Phone +44 (0) 1865 273701 Parks Road. Oxford. OX1 3PH
Fax +44 (0) 1865 283333 ron.doole-at-materials.ox.ac.uk
________________________________________
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Sent: 26 February 2011 16:40
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Email: rfoley-at-uab.edu Name: Robin D Foley

Organization: UAB

Title-Subject: [Filtered] Hall of Shame - Student Users

Message: Question for university facility managers -

Yesterday, on my very old SEM, a student user accidentally engaged the
lock on the tilt. When the stage would not tilt, he decided to force it
and snapped off the 5 mm diameter steel rod that you move to tilt the
stage. He REALLY had to force it to cause this to happen. I'm sort of
wondering if he beat it with a hammer - but I don't see any signs of
that sort of damage!

What response do all of you take when someone screws up like this? How
do you prevent it?

Also, what kind of training do you give your students prior to letting
them loose on an SEM? We're about to replace our SEM with a new one
with lots of features. I'm trying to get a feel for what normal
training practices are and what works and doesn't work in your facility.
I've had two incidents similar to this in a year (steel valve bent at
45 degrees on sputter coater), and it seems like too many. I might need
some improvements in my training methods!

Thanks,

Robin Foley

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From: zia.rahman-1-at-nasa.gov
Date: Mon, 28 Feb 2011 03:00:14 -0600
Subject: [Microscopy] Jeol 840 manuals

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Stefan,

Yes, I have got both the Operating and the Technical Manuals of JEOL 840/JXA 840 (including WDS). Unfortunately, I do not have it as PDF but, the printed hard copy of the manuals. Let me know if it would still be helpful.

Zia ur Rahman
Johnson Space Center,
Houston, TX, USA
zia.rahman-1-at-NASA.GOV

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Dear All,
anybody out there who has the Operating Instructions and the Technical Manual of the Jeol 840 as PDFs?
I would be very fond of getting a copy.

Thanks,
Stefan


--
-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
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Anfahrt: http://Mail.map24.com/Stefan.Diller

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From: zaluzec-at-aaem.amc.anl.gov
Date: Mon, 28 Feb 2011 08:31:25 -0600
Subject: [Microscopy] Administrivia: Replying to Listserver Messages

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Colleagues

I am beginning to see a number of messages which are "replies to
forward email". Please note that if you wish your reply to a posting
to go to the entire list you must send it as a NEW message to:

microscopy-at-microscopy.com

just include a copy of the original message after your reply.

If you just use your Email program to issue a "reply" it will only go
to the Sender and not to the entire list. If you truely wish to reply
only to the sender this is of course your prerogative.

An even more incidious issue arises if you reply to

"microscopy-noreply-at-microscopy.com"

These replies will literally go into a black hole. This is particularly
important for messages which are forwarded as "via WWW" these are
postings which come in via the Web base form and will most susceptible
to this problem.

Nestor
Your Friendly Neighborhood SysOp


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===========================================

The box said ...
"This program requires Win 95/98/NT/2K/XP/Vista or better..."
So I bought a Mac !

===========================================

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 28 Feb 2011 08:56:33 -0600
Subject: [Microscopy] viaWWW:EM facility

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This Question/Comment was submitted to the Microscopy Listserver
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Email: j.janssen-at-nki.nl Name: Hans Janssen

Organization: Netherlands Cancer Institute

Title-Subject: [Filtered] EM facility

Message: We now have some guests from an other organization working on
our TEMs, up to now without any damage or other trouble, but of course
this is no garantee. We do not charge anything for noncommercial
institutes unless they start to use it a lot. Does anybody out there
uses contracts for EM users from outside companies/institutes to prevent
discussions on costs for repair? And is there anything in that contract
about costs for consumables/beam time? Could you please sent me an
example (off the list)of such a contract? Thanks in advance, Hans.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 28 Feb 2011 08:57:15 -0600
Subject: [Microscopy] viaWWW:CM10 problem

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Email: pveril-at-apae.uth.gr Name: Berillis Panagiotis

Organization: University of Thessaly

Title-Subject: [Filtered] CM10 problem

Message: Hello everybody. We have a Philips CM10 transmission electron
microscope and i have a strange problem. When i power up the microscope
the CRT monitor seems to be dead but the microscope begins to create
vacuum. The monitor worked just fine the last time that the microscope
was used. It was shut down property and nobody worked with it for a very
long time (about 5 months). Does anybody has any idea how can i overcome
this problem?
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From: RossLM-at-missouri.edu
Date: Mon, 28 Feb 2011 09:05:33 -0600
Subject: [Microscopy] Question for.....

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

As always, great information and advice on the subject by the listserver.

As for the repair costs, check with your business office to see if it is
covered by the University's insurance. Years ago a student blew out the EDS
window by not following directions and on a hunch I called our Business
Office to learn that this type of accident was covered by the University of
Missouri's insurance policy.

Our lab only had to pay the $1000 deductible out of the ~$10K repair. Since
then we have also filed a claim to cover a broken BSE detector, similar
repair costs and same deductible. This sure lessens the burden and gives the
facility staff a little peace of mind for the "learn from your mistakes"
part of the education process.

Good Luck,
Lou
--
Sr. Research Specialist
University of Missouri
Electron Microscopy Core Facility
W136 Veterinary Medicine Building
Columbia, MO 65211
573.882.4777, fax 573.884.2227
RossLM-at-missouri.edu
http://www.emc.missouri.edu/



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From: ben.micklem-at-pharm.ox.ac.uk
Date: Mon, 28 Feb 2011 09:59:32 -0600
Subject: [Microscopy] viaWWW:CM10 problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Our CM10 had its CRT replaced last year, as it was taking about 20 minutes
to warm up enough to be visible (from start up of the machine). Just to
check the obvious: the data dim knob is turned fully to the right? The
panel dim knob is pushed in? And the light sensor is uncovered and getting
enough light? If these things are OK, I would guess the CRT has just died.

You may be able to find a used (but still good) one (as we did) if you
have a friendly EM engineer.

Good luck,

Ben


--
Imaging Technician
MRC Anatomical Neuropharmacology Unit, Mansfield Road,
Oxford, OX1 3TH, United Kingdom. Telephone: 01865 271866
{http://mrcanu.pharm.ox.ac.uk/}




}
} Email: pveril-at-apae.uth.gr Name: Berillis Panagiotis
}
} Organization: University of Thessaly
}
} Title-Subject: [Filtered] CM10 problem
}
} Message: Hello everybody. We have a Philips CM10 transmission electron
} microscope and i have a strange problem. When i power up the microscope
} the CRT monitor seems to be dead but the microscope begins to create
} vacuum. The monitor worked just fine the last time that the microscope
} was used. It was shut down property and nobody worked with it for a very
} long time (about 5 months). Does anybody has any idea how can i overcome
} this problem?
} Login Host: 94.66.182.158
} --------------------------------------------------------------------------



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From: William.F.Tivol-at-aero.org
Date: 02/26/2011 08:39 AM
Subject: [Microscopy] [Filtered]

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Robin,
Here's my 2 cents in addition to all the excellent suggestions
you've gotten so far. When I was in charge of facilities, in one case,
users were assigned to several categories. For the lowest category users,
the staff did everything except say which area to image, and the users
were allowed to do sequentially more so that the user in the highest
category could work completely on his own. The staff did all the
training, and the extent of the training was geared to how much time the
user was planning to spend--it was a regional resource facility, so we had
users who visited only once and others who spent many days at our scope.
The other case was an academic situation, probably more like yours, where
each user was a student or postdoc, so each user was thoroughly trained.
In that case, the user was shown each procedure until both he and the
staff member were confident that he knew how to do the procedure, then the
staff member watched the user do the procedure until, again, both were
confident, and finally, the user was allowed to do the procedure on his
own. In all cases, the users were firmly instructed to come and get me
(or call my cell phone or pager if I could not immediately be found) and
let me know if anything unexpected happened. This instruction was to be
followed even if it was 3 AM--I kept my pager on when I knew a user was to
be on the scope. This worked pretty well except for one user who did not
accept authority. His culture did not accord women equal status, and
since his mentor was a woman, he had a tendency not to listen to her.
Eventually, I was able to get him to realize that I had the bona fides for
him to listen to me, and things got better, but not before he had
introduced a virus into the software and made other problems for everyone.
It is impossible to idiot-proof everything, since there is a never-ending
supply of new idiots, but one can keep it as a goal. I hope you can use
some of this in your situation.
Yours,
Bill



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Email: rfoley-at-uab.edu Name: Robin D Foley

Organization: UAB

Title-Subject: [Filtered] Hall of Shame - Student Users

Message: Question for university facility managers -

Yesterday, on my very old SEM, a student user accidentally engaged the
lock on the tilt. When the stage would not tilt, he decided to force it
and snapped off the 5 mm diameter steel rod that you move to tilt the
stage. He REALLY had to force it to cause this to happen. I'm sort of
wondering if he beat it with a hammer - but I don't see any signs of
that sort of damage!

What response do all of you take when someone screws up like this? How
do you prevent it?

Also, what kind of training do you give your students prior to letting
them loose on an SEM? We're about to replace our SEM with a new one
with lots of features. I'm trying to get a feel for what normal
training practices are and what works and doesn't work in your facility.
I've had two incidents similar to this in a year (steel valve bent at
45 degrees on sputter coater), and it seems like too many. I might need
some improvements in my training methods!

Thanks,

Robin Foley

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From: bozzola-at-siu.edu
Date: Mon, 28 Feb 2011 15:08:32 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:Question for

Contents Retrieved from Microscopy Listserver Archives
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by ns.microscopy.com (8.12.11.20060308/8.12.8) with ESMTP id p1SL8WTN026388
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Mon, 28 Feb 2011 15:08:32 -0600

Excellent suggestions from the previous responses.

I've been involved in centralized facilities for over 30 years and
have experienced the good, the marginal and the really bad.

There is no substitute for thorough training and testing prior to
turning users loose with equipment. We offer both formal (for credit)
graduate level courses in SEM and TEM as well as individualized
training for researchers with various levels of experience.

After the training (that covers theory and hands-on use of the
equipment), all users submit to a "check out" examination. This
consists of 10 or so written, basic questions about the instrument
(precautions mostly) and then the researcher is asked to demonstrate
their competency (insert specimen, use the instrument under various
conditions, record images, remove specimen). Most people do pass the
exam, but we have had several individuals who could only use the
instrument with assistance from our staff.

We are extremely careful with our instruments since we have little to
no funding to replace damaged components. Even our oldest instrument,
a 28 yr old Hitachi S570, still meets original specifications and is
quite clean in appearance. Everyone knows that controls are to be
adjusted to "microscope tight" specifications. That is, do not over
tighten and call someone if something is stuck.

If researchers are really interested in learning to use the
instruments, they will learn how to use them correctly. The problem
cases almost always involve someone who is only marginally interested
in the instrument and regards it as a basic tool to achieve their
goals. They are often in a hurry to obtain data for an overdue report
and don't want to waste time finessing the instrument. We all know the
result: poor images, sloppy work area and sometimes damage to the
instrument.

One concept that does seem to work: "time is money." If you do not
spend the time to learn the instrument, you are wasting money since
the imaging will have to be repeated (the paper or dissertation will
be rejected, the grant not funded, etc.). When it costs them money,
people listen.

Even with all of this, accidents still do happen since we are imperfect beings.

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 28 Feb 2011 18:43:34 -0600
Subject: [Microscopy] viaWWW:CM10 problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

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Email: j.janssen-at-nki.nl Name: Hans Janssen

Organization: Netherlands Cancer Institute

Title-Subject: [Filtered] CM10 problem

Message: This seems to be a defective monitor, because the program
started up okay, so the self test of the internal computer was performed
well. Maybe there is just a loose connector.
Good luck, Hans.


Email: pveril-at-apae.uth.gr Name: Berillis Panagiotis

Organization: University of Thessaly

Title-Subject: [Filtered] CM10 problem

Message: Hello everybody. We have a Philips CM10 transmission electron
microscope and i have a strange problem. When i power up the microscope
the CRT monitor seems to be dead but the microscope begins to create
vacuum. The monitor worked just fine the last time that the microscope
was used. It was shut down property and nobody worked with it for a very
long time (about 5 months). Does anybody has any idea how can i overcome
this problem?
Login Host: 94.66.182.158


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 28 Feb 2011 20:01:39 -0600
Subject: [Microscopy] viaWWW:OCF scheduler problem

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Email: sbarlow-at-sciences.sdsu.edu Name: Steve Barlow

Organization: SDSU EM Facility

Title-Subject: [Filtered] OCF scheduler problem

Message: Dear listers

We have been using the OCF Scheduler software developed at UofA. Upon
upgrading our PHP server from version 5.2 to 5.3, the software no longer
works properly. Has anyone else discovered the same thing? Anyone else
got a fix? There have been rumors funding was being sought to
update/upgrade this program, but so far as I know, these plans, and an
updated version, remain pie in the sky.

I really liked the potential in this software, particularly the ability
to record log on and log off of an instrument running on a windows box
to a central database.

Given the repeated requests for scheduling software on the listserve,
might this be something the Facility manager FIG, in conjunction with
MSA, might be able to develop in conjunction with the instrument
manufacturers and NSF/NIH? After all, many grant applications and
final reports ask for user hours information.

Steve Barlow

Login Host: 146.244.234.42
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From: nizets2-at-yahoo.com
Date: Tue, 1 Mar 2011 02:59:10 -0600
Subject: [Microscopy] for university facility

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I too agree with Debby and Lee. I would add that during the training you can
usually "feel" how your to-be-user is functionning and what is his risk
management strategy. Does he listen carefully at your instructions? Does he
hesitate before performing an action (which is actually a good sign: he thinks
before doing)?
I would add something else: my strategy is to give the impression that the
instrument is extremely complex and delicate (which is not far from the truth)
and also that access to this sort of instrument is an extraordinary privilege.
The user should not take his work easy. Thinking is not an option, it is an
obligation!
During the training I deliberately emphasize that the user must follow very
precise instructions. I think that the worst would be to say "well just sit down
and try it yourself, it is the best way to learn".
In brief: I do my best to impress and I deliberately show a strict and severe
profile. I am not cool at all at the electron microscope! I think this gives the
user a sense of responsability for this instrument and they are more careful
with it.

Stephane



----- Original Message ----
X-from: "lcgould-at-med.cornell.edu" {lcgould-at-med.cornell.edu}
To: nizets2-at-yahoo.com
Sent: Sun, February 27, 2011 9:14:31 PM


I heartily agree with Debby-
I too have run a Core Facility for } 20 years, and was a primary user of a Core
at another institution before that. I modeled my rules after the ones at that
institution.  They are, like Debby's few but strict:
EVERYONE who wishes to use an instrument, must be trained by Facility staff.  NO
second-hand training is allowed for the reasons Debby mentioned.
ALL problems should be reported to me immediately so that I can address them.
Use of the Facility is a privilege, and privileges can be suspended if a user is
repeatedly guilty of not following rules & instructions or is found to have
mistreated an instrument.

I have, on occasion, informed at PI that person X in his/her lab would not be
given independent access to a particular instrument because, after training, I
did not have confidence that the person would be able to work independently.

I have been fortunate.  In 23 years, I have experienced only minor use-generated
problems with any of the instruments in my 2 facilities (EM and Optical
Microscopy).  I did have to send the motorized stage on my LM out for repair
because users had repeatedly tried to drive it past its limit because they were
not attentive to what they were doing.  I was able to narrow it down to a very
small handful of possible miscreants....all of whom denied doing anything wrong
(of course).  I told all my users how much the repair cost, and that if I had to
send the part out again for the same repair, I would divide the cost evenly
among the labs who used that particular microscope.  This did seem to put them
on notice and there have been no new signs of abuse.

Strict training (I give my confocal users a minimum of 4 hours...usually 6)and
clearly written instructions go a long way to insuring long-life for your
instrument.
Good luck,
Lee

On 02/26/11, dsherman-at-purdue.edu wrote:

} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
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}
} Robin,
}  
} I have been teaching microscopy and managing/directing a good sized
} service/multi-user EM facility for over 20 years (additional time as a user
} or service provider in smaller facilities). I am very happy to say that in
} that period we have had extremely few user accidents.  I attribute that to
} three major reasons:
} 1) good training for all users before they are given their flying license.
} 2) support by facility staff to assist, answer questions, continue to
} train/educate on a routine basis.
} 3) A certain amount of fear that users can loose access privileges if they
} misuse instruments/break rules/do not respect other users.
}
} (1) requires offering (and requiring) courses where students learn basic
} theory and hands-on use of major instrumentation....during which they are
} instructed in both what to do and what not to do. If you are not willing to
} put in the time required to train/educate users than you and the instruments
} will run into problems at some point. It all starts from learning correctly
} in the beginning with the emphasis on good habits, sufficient understanding
} to make good choices, and thus get good results.  Users training users is
} problematic in my experience, as bad habits get passed on and magnified over
} time.
}
} 2) A good relationship between facility staff and users results in users who
} are not hesitant to ask for help.  This means knowing your users, showing an
} interest in them and their projects and offering assistance when asked. You
} will quickly learn who needs some additional help along the way and who can
} work truly independently.
}
} 3) I don't apologize for this one. Facility rules are there for a reason.
} Down instruments due to user error affect many and that is unfair. The
} primary rule I have always enforces is that users to do not attempt to fix
} anything at any time. What seems simple often is a sign of much more
} significant problems that can be averted if the staff knows about them and
} responds accordingly. Failure to follow this rule results in much closer
} scrutiny and potential loss of privileges (rarely necessary).
}
} All users may not perform at the same level but that does not mean that all
} cannot learn to use instruments with respect for the instrument and their
} fellow users. Part of our jobs as facility staff is to teach, train, and
} support to insure that this happens. We may not be 100% successful, but the
} number and severity of incidents will decrease significantly as a result.
}
} Debby
}
} ---
} Debby Sherman, Director               Phone: 765-494-6666
} Life Science Microscopy Facility      FAX:  765-494-5896
} Purdue University                     E-mail: dsherman-at-purdue.edu
} S-052 Whistler Building
} 170 S. University Street
} West Lafayette, IN 47907
} http://www.ag.purdue.edu/facilities/microscopy
} (http://www.ag.purdue.edu/facilities/microscopy)
}
}
}
}
} On 2/26/11 11:33 AM, "microscopylistserver-noreply-at-microscopy.com"
} {microscopylistserver-noreply-at-microscopy.com} wrote:
}
} }
} }
} }
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} } Email: rfoley-at-uab.edu Name: Robin D Foley
} }
} } Organization: UAB
} }
} } Title-Subject: [Filtered] Hall of Shame - Student Users
} }
} } Message: Question for university facility managers -
} }
} } Yesterday, on my very old SEM, a student user accidentally engaged the
} } lock on the tilt.  When the stage would not tilt, he decided to force it
} } and snapped off the 5 mm diameter steel rod that you move to tilt the
} } stage.  He REALLY had to force it to cause this to happen.  I'm sort of
} } wondering if he beat it with a hammer - but I don't see any signs of
} } that sort of damage!
} }
} } What response do all of you take when someone screws up like this? How
} } do you prevent it?
} }
} } Also, what kind of training do you give your students prior to letting
} } them loose on an SEM?  We're about to replace our SEM with a new one
} } with lots of features.  I'm trying to get a feel for what normal
} } training practices are and what works and doesn't work in your facility.
} }    I've had two incidents similar to this in a year (steel valve bent at
} } 45 degrees on sputter coater), and it seems like too many.  I might need
} } some improvements in my training methods!
} }
} } Thanks,
} }
} } Robin Foley
} }
} }    Login Host: 138.26.80.163
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} }
} }  
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} } 2011
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} ==============================Original Headers==============================
} 15, 30 -- From dsherman-at-purdue.edu Sat Feb 26 15:31:30 2011
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} 15, 30 -- To: "message to: MSA list" {microscopy-at-microscopy.com} ,
} 15, 30 --         "rfoley-at-uab.edu"
} 15, 30 --  {rfoley-at-uab.edu}
} 15, 30 -- Date: Sat, 26 Feb 2011 16:31:27 -0500
} 15, 30 -- Subject: Re: [Microscopy]  for university facility
} 15, 30 -- Thread-Topic: [Microscopy]  for university facility
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}
--
Lee Cohen-Gould, M.S., C.E.M.T.
Sr. Staff Associate in Biochemistry and
Cell & Developmental Biology
Director, Electron Microscopy & Histology
and Optical Microscopy Core Facilities                       
 Weill Cornell Medical College

voice  (212)746-6146
fax (212)746-8175
http://www.med.cornell.edu/research/rea_sup/
http://www.cornellbiochemistry.org
http://www.cornellcelldevbiology.org





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26, 36 -- From: Stephane Nizet {nizets2-at-yahoo.com}
26, 36 -- Subject: Re: [Microscopy] for university facility
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From: nholson-at-ucsd.edu
Date: Tue, 1 Mar 2011 12:18:41 -0600
Subject: [Microscopy] Re: for university facility

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Here is the response I received from my IT specialist:

We intentionally do no not upgrade that server because of these
potential issues. It's like one of those old Bell telephones, not fancy
but it keeps going and doesn't break.

Aaron


-------- Original Message --------

This Question/Comment was submitted to the Microscopy Listserver using
the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: sbarlow-at-sciences.sdsu.edu Name: Steve Barlow

Organization: SDSU EM Facility

Title-Subject: [Filtered] OCF scheduler problem

Message: Dear listers

We have been using the OCF Scheduler software developed at UofA. Upon
upgrading our PHP server from version 5.2 to 5.3, the software no longer
works properly. Has anyone else discovered the same thing? Anyone else
got a fix? There have been rumors funding was being sought to
update/upgrade this program, but so far as I know, these plans, and an
updated version, remain pie in the sky.

I really liked the potential in this software, particularly the ability
to record log on and log off of an instrument running on a windows box
to a central database.

Given the repeated requests for scheduling software on the listserve,
might this be something the Facility manager FIG, in conjunction with
MSA, might be able to develop in conjunction with the instrument
manufacturers and NSF/NIH? After all, many grant applications and
final reports ask for user hours information.

Steve Barlow

Login Host: 146.244.234.42
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MicroscopyListServer-Forward {microscopy-at-microscopy.com} 12, 25 --

EM'ers: I have enjoyed this thread and have followed it pretty
closely. I guess human nature is human nature because much of what I
have read I also could have written since I have seen the same
instances. One of the ways I have identified those students who may
be trouble is if they take notes or not when I am showing them the
instrument. Those who fail to take notes usually are the worst
users. I tell all of my students to take notes because their notes
will be their user's manual. I feel that if they have to write
things down at least they are processing the material at least once.
On the first session with one of my recent students I told him to
take notes and I saw that he wasn't. I then showed him four times
how to put in and take out the sample holder. On his first attempt
to put in the holder he did exactly what I told him not to do and he
blew the vacuum. On his next session with me I told him three times
to take notes and he finally did. I am obviously keeping my eye on
him.

I have heard a number of you say that it is mandatory at your
facility for facility staff to do the training. I fully agree with
that but here I don't have that option. I have two assistant faculty
members who, unfortunately, are on the faculty advisory committee.
They decided that they were going to train their own people. We have
already seen problems because of that. At the very least I have had
to go behind them and fill in where their training has been lacking.
Just yesterday a student of one of the faculty messed up my carbon
evaporator enough that I had to take it apart and clean everything
and that wasn't the first time this student messed up. Luckily,
those two faculty members are not heavy users.

Norm Olson



} From: "nizets2-at-yahoo.com" {nizets2-at-yahoo.com}
} To: "Olson, Norman" {nholson-at-ucsd.edu}
} Date: Tue, 1 Mar 2011 01:00:29 -0800
} Subject: [Microscopy] Re: for university facility
} Thread-Topic: [Microscopy] Re: for university facility
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==============================Original Headers==============================
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From: syli-at-northwestern.edu
Date: Mon, 28 Feb 2011 18:07:17 -0800
Subject: [Microscopy] viaWWW:OCF scheduler problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve and other listers,

You may want to consider an alternative scheduling system FOM (Facility
Online Manager at http://www.FOMNetworks.com/ ). Numerous EM facilities have
decided to use FOM system.

The limited version costs only $100 for life time use supporting unlimited
number of instruments and users in one facility.

The limited version of FOM provides scheduling function similar to Calcium
or OCF system, plus inventory management, collaboration tracking
(upload/download exp results and pdf files), survey function and email
lists. The full version of FOM also supports hardware access control to the
instruments, billing and reporting. We also customize the system for you if
needed.

To see a comparison of popular instrument scheduling systems used, please
visit http://www.fomnetworks.com/Compare_online_scheduling_software.html

As the founder of FOM Networks, I am open to discuss any possibilities with
Facility Manager FIG and/or MSA in order for more EM facilities to benefit
from the well-established Facility Online Manager system.

DISCLAIMER: This email is sent on behalf of FOM Networks, Inc.

Best Regards,
Shuyou Li
_________________
Shuyou Li, Ph.D.
FOM Networks, Inc.
www.fomnetworks.com
224-225-9168



-------- Original Message --------

This Question/Comment was submitted to the Microscopy Listserver using the
WWW based Form at  http://www.microscopy.com/MLFormMail.html
---------------------------------------------------------------------------
Remember this posting is most likely not from a Subscriber, so when
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---------------------------------------------------------------------------

Email: sbarlow-at-sciences.sdsu.edu Name: Steve Barlow

Organization: SDSU EM Facility

Title-Subject: [Filtered] OCF scheduler problem

Message: Dear listers

We have been using the OCF Scheduler software developed at UofA.  Upon
upgrading our PHP server from version 5.2 to 5.3, the software no longer
works properly.  Has anyone else discovered the same thing?  Anyone else got
a fix? There have been rumors funding was being sought to update/upgrade
this program, but so far as I know, these plans, and an updated version,
remain pie in the sky.

I really liked the potential in this software, particularly the ability to
record log on and log off of an instrument running on a windows box to a
central database.

Given the repeated requests for scheduling software on the listserve, might
this be something the Facility manager FIG, in conjunction with MSA, might
be able to develop in conjunction with the instrument
manufacturers and NSF/NIH?   After all, many grant applications and
final reports ask for user hours information.

Steve Barlow

    Login Host: 146.244.234.42
---------------------------------------------------------------------------





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26, 23 -- To: {microscopy-at-microscopy.com}
26, 23 -- Cc: {sbarlow-at-sciences.sdsu.edu}
26, 23 -- Subject: RE: [Microscopy] viaWWW:OCF scheduler problem
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From: drg.mitchell-at-sydney.edu.au
Date: Tue, 1 Mar 2011 17:50:53 -0600
Subject: [Microscopy] TEM: User Training

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listservers

RE: Training new users

The Australian Centre for Microscopy and Microanalysis (ACMM) at the
University of Sydney, is the largest facility of its kind in Australia. We
have 7 TEMs, 6 SEMs, 2 atom probes and lots of sophisticated light and
optical and x-ray equipment. This brings in over 400 registered users
annually, approximately 1/3rd of whom are new users. Effective training is
essential to ensure users get up to speed quickly, and also to ensure that
costly mistakes don't happen. The training regime we use is as follows:

1. New users attend a meeting with relevant academic/technical staff to
determine what they are trying to do, how best to do it, and on which
instrument.

2. Training (for TEM) is usually 3 x 3hr sessions either with a technical
staff member or with one of our competent grad students. Users are taught
from a standardised manual, which shows step by step procedures with lots of
pictures. Users are encouraged to annotate their own copy of the manual.

3. After training users are given 1-3 supervised solo sessions, where tech
staff get them started and drop in frequently to assist with any queries.

4. Once the user is confident running the machine solo they are assessed.
This is two part process. The first part is a 40 question multiple choice
quiz, covering basic theory, instrument operation, safety etc which is
covered during training. Nobody fails the quiz - we use it as a safety net
to fill in gaps in users' knowledge. The second part is an assessment, where
the user goes through setting up, operating and shutting down the instrument
- it's open book so they can refer to the manual. This is supervised by
technical staff to ensure quality control. Users need to be able to do all
the basics without undue hesitation and without harming (or nearly harming)
the microscope.

5. Users who fail the test are given more training. In some cases lots more,
until they get it right.

6. Users on instruments can always get immediate help from one of our
technical staff by calling our Duty Microscopist number. This avoids having
users wander corridors in search of staff, and avoids them getting bored and
trying to fix things themselves - which is usually where things go bad.

Despite all the above, trained users stuff things up occasionally, usually
through carelessness. Such users are retrained in whatever they stuffed up
and watched carefully thereafter. We avoid tearing strips off users who do
bad things as it discourages them from asking for help or owning up to
mistakes. We strongly encourage 'if in doubt - ask'.

Regards,

Dave Mitchell



Dr David Mitchell
Senior Microscopist, TEM Manager

Contact:
PH +61 2 9036 7633
FAX +61 2 9351 7682
drg.mitchell-at-sydney.edu.au

Address:
Australian Centre for Microscopy & Microanalysis
Incorporating:
Australian Microscopy & Microanalysis Research Facility
ARC Centre of Excellence for Design in Light Metals
Madsen Building F09, Room 128A
The University of Sydney
NSW, 2006, Australia
sydney.edu.au/acmm {http://www.sydney.edu.au/acmm}
www.ammrf.org.au {http://www.ammrf.org.au/}

www.dmscripting.com




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Subject: [Microscopy] viaWWW:Job Opening: Research Assistant Professor Position in Aberration-Corrected

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Title-Subject: [Filtered] Job Opening: Research Assistant Professor
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Message: An Research Assistant Professor position is available in the
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 1 Mar 2011 20:48:27 -0600
Subject: [Microscopy] viaWWW:electron microscopy and pigments

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Email: Angel.Paredes-at-fda.hhs.gov Name: Angel Paredes

Organization: FDA/NCTR

Title-Subject: [Filtered] electron microscopy and pigments

Message: Hi,

I have a researcher interested in identifying pigments from a sample. I
cannot think of a way we can use TEM or SEM to identify these pigments.
I think that all the pigments within the sample will have similar
composition of elements and I don't think we will be able to distinguish
them. Has anyone ever looked at identifying pigments from their
specimens maybe a method we could try?

Sincerely,
Angel Paredes

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From: jsb43-at-cam.ac.uk
Date: Wed, 2 Mar 2011 03:10:05 -0600
Subject: [Microscopy] Re: Question for university facility

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Dear Robin,

Thanks for your message. It seems to have elicited a large range of
responses, so you have tapped a very rich seam of opinion.

We are fortunate to have quite a lot of equipment (7 TEMs, 5 SEMs and a
FIB/SEM) run by a few technical staff. However, I train a lot of new TEM
users so my experience is restricted to those...

Occasionally, we have problems like you've described. One student left a
TEM specimen holder with a 30 degree bend in the middle of it after taking
out. The culprit never admitted it (it is usually a man), but it wasn't
difficult to eliminate all but him. We have also found there are cultural
variations in attitudes to the equipment and this usually correlates with
the degree of note-taking (this is a very early indicator for us). For
example, I'm training one young lady who takes copious notes and treats the
machine well; I've had others who take few or no notes and then take an
extremely long time to train properly.

One useful strategy I've found when training pairs, is that I will talk one
student through (they do all the work) and then, when they have completed
microscope alignment, get them to talk the next guy/girl through. I've
found this useful because I take a lot of microscope-jargon for granted,
whereas the students often rephrase the terms to make more sense (between
themselves). I interject only if they proceed down blind alleys or if the
machine is in some danger.

TEM training usually takes about 15-20 hours all in all. After about 6
hours the students start to become confident to handle the machine, but the
bad habits start creeping in by hour ten. Fifteen is usually the minimum to
get a newbie to taking good stigmatism-free images, in focus and an ability
to use the machine profitably without too many problems. We also have a
driving test in which we observe the user, but try not to interfere if we
can. They are usually asked several questions related to safety too
vis-a-vis X-rays, liquid nitrogen handling and microscope covers/shielding.

I hope this helps.

Best, Jon Barnard

Dept of Materials Science & Metallurgy,
University of Cambridge, UK.

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From: dsherman-at-purdue.edu
Date: Wed, 2 Mar 2011 07:39:14 -0600
Subject: [Microscopy] Re: Question for university facility

Contents Retrieved from Microscopy Listserver Archives
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A few people have mentioned note-taking as an important indicator of whether people are training well. I have found that note-taking does not correlate with subsequent competence. However, providing a step-by-step checklist of how to turn on the instrument, set up specific imaging conditions, etc. is invaluable. This provides quality control from the most instrument phobic to the most expert. People used to say, "I can't get the machine to work." I would respond, "Did you use the checklist?" and then model the behavior of going through it step-by-step (of course, I never needed the checklist myself).
-Michael Cammer

-----Original Message-----
X-from: jsb43-at-cam.ac.uk [mailto:jsb43-at-cam.ac.uk]
Sent: Wednesday, March 02, 2011 4:20 AM
To: Cammer, Michael

I agree with the checklist concept and the importance of taking notes. In
our case it is a written handout for each instrument. These are
time-consuming to write initially but pay big dividends down the road.
Once the students know the names/function of the knobs or have an idea of
the software they should be able to follow the handouts to do basic
alignment and operation. Students can then personalize as necessary for
their understanding but the basics are there so the amount of required note
taking is reduced. The instructions are there for quick review for those
who have been off the instruments for a time and need a refresher.

Of course students have to remember to bring them with them when they
come....... ( keep a copy available just in case).

Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/


} From: "Michael.Cammer-at-med.nyu.edu" {Michael.Cammer-at-med.nyu.edu}
} Reply-To: "Michael.Cammer-at-med.nyu.edu" {Michael.Cammer-at-med.nyu.edu}
} Date: Wed, 2 Mar 2011 08:23:29 -0500
} To: Debby Sherman {dsherman-at-purdue.edu}
} Subject: [Microscopy] Question for university facility
}
}
}
}
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} A few people have mentioned note-taking as an important indicator of whether
} people are training well. I have found that note-taking does not correlate
} with subsequent competence. However, providing a step-by-step checklist of
} how to turn on the instrument, set up specific imaging conditions, etc. is
} invaluable. This provides quality control from the most instrument phobic to
} the most expert. People used to say, "I can't get the machine to work." I
} would respond, "Did you use the checklist?" and then model the behavior of
} going through it step-by-step (of course, I never needed the checklist
} myself).
} -Michael Cammer
}
} -----Original Message-----
} X-from: jsb43-at-cam.ac.uk [mailto:jsb43-at-cam.ac.uk]
} Sent: Wednesday, March 02, 2011 4:20 AM
} To: Cammer, Michael
} Subject: [Microscopy] Re: Question for university facility
}
} and this usually correlates with
} the degree of note-taking (this is a very early indicator for us). For
} example, I'm training one young lady who takes copious notes and treats the
} machine well; I've had others who take few or no notes and then take an
} extremely long time to train properly.
}
}
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From: eschumacher-at-mccrone.com
Date: Wed, 2 Mar 2011 07:53:22 -0600
Subject: [Microscopy] Re: Electron Microscopy and Pigments

Contents Retrieved from Microscopy Listserver Archives
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Hello Angel,

We do quite a bit of pigment analysis here using multiple techniques, starting with polarized light microscopy. This can often be definitive, but SEM is typically used for confirmation of elemental composition. Electron microscopy can be especially useful for analysis of smaller particles that might be present in the pigment, and for detection of trace elements. Transmission electron microscopy is not used as often here as SEM, but is valuable in that it provides information about particle morphology, elemental composition and crystalline phase on even the smallest particles in a sample. Even if two pigments have similar elemental compositions, higher resolution electron microscopy techniques may provide information about variations in elemental ratios, presence of trace elements or minor phases, and information about particle size and morphology or crystalline phase that will be of help in identifying the pigment or determining whether it is a natural or synthetic material, if that's of interest to your researcher. You may also want to consider the nature of the samples; are they pure pigments, or have they been sampled from an object or a substrate that might contribute other types of particulate? I would advise starting with PLM, and using SEM and/or TEM from there to confirm and expand upon the PLM results.

Best regard,

Elaine


Email: Angel.Paredes-at-fda.hhs.gov Name: Angel Paredes

Organization: FDA/NCTR

Title-Subject: [Filtered] electron microscopy and pigments

Message: Hi,

I have a researcher interested in identifying pigments from a sample. I cannot think of a way we can use TEM or SEM to identify these pigments.
I think that all the pigments within the sample will have similar composition of elements and I don't think we will be able to distinguish them. Has anyone ever looked at identifying pigments from their specimens maybe a method we could try?

Sincerely,
Angel Paredes



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From: oshel1pe-at-cmich.edu
Date: Wed, 2 Mar 2011 08:04:14 -0600
Subject: [Microscopy] Re: viaWWW:electron microscopy and pigments

Contents Retrieved from Microscopy Listserver Archives
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What kinds of pigments in what kind of sample?

} Email: Angel.Paredes-at-fda.hhs.gov Name: Angel Paredes
}
} Organization: FDA/NCTR
}
} Title-Subject: [Filtered] electron microscopy and pigments
}
} Message: Hi,
}
} I have a researcher interested in identifying pigments from a sample. I
} cannot think of a way we can use TEM or SEM to identify these pigments.
} I think that all the pigments within the sample will have similar
} composition of elements and I don't think we will be able to distinguish
} them. Has anyone ever looked at identifying pigments from their
} specimens maybe a method we could try?
}
} Sincerely,
} Angel Paredes

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
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(989) 774-3576

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From: DusevichV-at-umkc.edu
Date: Wed, 2 Mar 2011 09:33:04 -0600
Subject: [Microscopy] RE: viaWWW:electron microscopy and pigments

Contents Retrieved from Microscopy Listserver Archives
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While I do not have much experience with pigment microscopy, from using pigments for painting I know they can contain Fe, Cr, Cd, Hg, Pb, Cu, Co, Cr... Using EDS alone may not be enough for identifying pigment (Cd containing pigments could be yellow, red, green), but it can be a good starting point.
Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784


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} Title-Subject: [Filtered] electron microscopy and pigments
}
} Message: Hi,
}
} I have a researcher interested in identifying pigments from a sample.
} I
} cannot think of a way we can use TEM or SEM to identify these pigments.
} I think that all the pigments within the sample will have similar
} composition of elements and I don't think we will be able to
} distinguish
} them. Has anyone ever looked at identifying pigments from their
} specimens maybe a method we could try?
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} Sincerely,
} Angel Paredes
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From: William.F.Tivol-at-aero.org
Date: 03/01/2011 06:59 PM
Subject: [Microscopy] viaWWW:electron microscopy and pigments

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Angel,
This looks like a task for LM. The absorption spectra and/or
fluorescence spectra are characteristic of the pigments, and, if there are
several pigments in small adjacent areas, you could measure the spectra.
Of course, some pigments, like cobalt blue, could be identified from EDS,
but your post suggests that you have organic pigments to deal with.
Yours,
Bill



X-from: microscopylistserver-noreply-at-microscopy.com
To: William.F.Tivol-at-aero.org



Title-Subject: [Filtered] electron microscopy and pigments

Message: Hi,

I have a researcher interested in identifying pigments from a sample. I
cannot think of a way we can use TEM or SEM to identify these pigments.
I think that all the pigments within the sample will have similar
composition of elements and I don't think we will be able to distinguish
them. Has anyone ever looked at identifying pigments from their
specimens maybe a method we could try?

Sincerely,
Angel Paredes


==============================Original Headers==============================
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From: kristin.a.breen-at-exxonmobil.com
Date: 03/01/2011 06:59 PM
Subject: [Microscopy] viaWWW:electron microscopy and pigments

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Angel,

FTIR and possibly FTIR Microscopy can also be helpful in identifying
pigments (as long as they aren't filled with carbon black). There is an
excellent FTIR reference on this topic:
"High Resolution Spectra of Inorganic Pigments and Extenders In the
Mid-Infrared Region From 1500 cm-1 to 200 cm-1" by Leonard C. Afremow and
John T. Vandeberg. This was published in the Journal of Paint Technology
, Vol 38, No 495, April 1966.

Kristin A. Breen
Chemist, Analytical Sciences Laboratory
ExxonMobil Research and Engineering
Paulsboro Technical Center
Paulsboro, NJ 08066
(856) 224-2864





----- Forwarded by Kristin A Breen/EastCoast/Mobil-Notes on 03/02/2011
01:05 PM -----

William.F.Tivo
l-at-aero.org
To
kristin.a.breen-at-exxonmobil.com
03/02/2011 cc
12:21 PM
Subject
[Microscopy] Re: viaWWW:electron
Please respond microscopy and pigments
to
William.F.Tivo
l-at-aero.org











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Dear Angel,
This looks like a task for LM. The absorption spectra and/or
fluorescence spectra are characteristic of the pigments, and, if there are
several pigments in small adjacent areas, you could measure the spectra.
Of course, some pigments, like cobalt blue, could be identified from EDS,
but your post suggests that you have organic pigments to deal with.
Yours,
Bill



X-from: microscopylistserver-noreply-at-microscopy.com
To: William.F.Tivol-at-aero.org



Title-Subject: [Filtered] electron microscopy and pigments

Message: Hi,

I have a researcher interested in identifying pigments from a sample. I
cannot think of a way we can use TEM or SEM to identify these pigments.
I think that all the pigments within the sample will have similar
composition of elements and I don't think we will be able to distinguish
them. Has anyone ever looked at identifying pigments from their
specimens maybe a method we could try?

Sincerely,
Angel Paredes


==============================Original
Headers==============================
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From: jeff-at-metallography.com
Date: Wed, 2 Mar 2011 12:23:10 -0600
Subject: [Microscopy] viaWWW:electron microscopy and pigments

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Angel et al,

The folks at McCrone Research have done extensive studies of pigments using
polarized light and other LM techniques. Perhaps you could contact them (
http://www.mcri.org/home/ ) for additional insight.

Jeff Stewart
Metallographic Lab Manager
Cookson Precious Metals
49 Pearl Street
Attleboro, MA 02703
508-222-7400 x1329

On Wed Mar 2 12:22 , William.F.Tivol-at-aero.org sent:

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From: zaluzec-at-aaem.amc.anl.gov
Date: Wed, 2 Mar 2011 13:46:43 -0600
Subject: [Microscopy] Re: viaWWW:electron microscopy and pigments

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Angel

I note that there is also going to be a Symposium at MM2011
(http://microscopy.org/MandM/2011/program/symposia.cfm) entitled

P07 Microscopy and Microanalysis Applications in Cultural Heritage Research

Quoting from the description of the symposium

"This symposium will focus on where the application of microscopy and
microanalysis techniques can aid cultural heritage research, principally
in the areas of conservation, maintenance, provenance and restoration.
Materials of study may include: Metals; ceramics (porcelain and
pottery); building materials (stone, brick and mortar); glass; textiles;
paper; paint and pigments; mineralogy; coinage and jewelry."

This should be an excellent place to get more information about
using microscopy in the study of pigments.


Nestor
Your Friendly Neighborhood SysOp




On 3/1/11 8:48 PM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Title-Subject: [Filtered] electron microscopy and pigments
}
} Message: Hi,
}
} I have a researcher interested in identifying pigments from a sample. I
} cannot think of a way we can use TEM or SEM to identify these pigments.
} I think that all the pigments within the sample will have similar
} composition of elements and I don't think we will be able to distinguish
} them. Has anyone ever looked at identifying pigments from their
} specimens maybe a method we could try?
}
} Sincerely,
} Angel Paredes
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From: bigelow-at-umich.edu
Date: Wed, 2 Mar 2011 14:01:41 -0600
Subject: [Microscopy] RE: instrument damage

Contents Retrieved from Microscopy Listserver Archives
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I have been very interested to read all the comments about users
misusing instruments. I managed the central electron microscopy
facility here at the University of Michigan for over twenty five
years, and came to the conclusion that some people just aren't built
to work with delicate instruments, while others take to the task just
naturally. This reminds me of the following story that I recall
telling in my Presidential Address at the annual EMSA banquet back in
1969 to illustrate this problem:

It seems that two students were talking over coffee in the student lounge;
First Student: "I hear you are raising parakeets; how is the project
working out?"

Second Student: "Fine, except that one bird keeps pecking the other
birds. I'm afraid he'll end up seriously injuring one of them if I
can't stop him"

First student: "That shouldn't be a problem. My grandmother raised
parakeets, and when one of them did that she stopped it by filing
just a bit off the end of his beak."

A week later the two students meet again:

First student: "Did filing the beak on your aggressive parakeet solve
your problem?"

Second student: "No, it killed him!"

First student: "Wow, it shouldn't have done that!"

Second student: "Well, it did! He was dead when I took his head out
of the vice".



--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
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From: ph2-at-sprynet.com
Date: Wed, 2 Mar 2011 15:12:15 -0600
Subject: [Microscopy] Re: Electron microscopy and pigments

Contents Retrieved from Microscopy Listserver Archives
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I'm with Elaine on this:

Use Polarized Light Microscopy on picked out pigment particles.

See:

1. McCrone: The Microscopical ID of artists Pigments, J Int Inst
Conserv Can Group, 17, 1-2, 11-34, 1982.
(BEST - PLM, SEM-EDX)

2. Schreiner: SEM and energy dispersive (EDX) anal appl in the field
of cultural heritage, Anal Bioanal Chem, 387, 737-747, 2007.
(SEM-EDX)

3. Banik: Microchemical characterization of paintings - A case study,
Microchim acta ,76, 1-2, 93-109, 1981.
(SEM-EDX FTIR)

There are others but these provide a good start.


Tony



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 2 Mar 2011 18:52:56 -0600
Subject: [Microscopy] viaWWW:epon etching

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Email: smythen-at-musc.edu Name: Nancy Smythe

Organization: Medical University of SC

Title-Subject: [Filtered] epon etching

Message: Years ago I cut my plastic sections and etched them to do other
than toludine blue staining. I can't find the procedure in the lab now
and was wondering if anyone had a procedure they are willing to share. I
know I cut and dried the sections as usual. Then I used a strong sodium
hydroxide, but how strong and how long I can't remember.

Thank you,
Nancy

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 2 Mar 2011 18:53:27 -0600
Subject: [Microscopy] viaWWW:AFM tips

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Email: pmccurdy-at-lamar.colostate.edu Name: Patrick McCurdy

Organization: CSU

Title-Subject: [Filtered] AFM tips

Message: Recently we our facility acquired an AFM. Our stockroom has
agreed to stock a tapping mode tip and a contact tip. My question is
what is the best generic tips if we only stock one of each kind.

Thanks,
Pat McCurdy
Colorado State University

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From: jehrman-at-mta.ca
Date: Thu, 3 Mar 2011 08:32:27 -0600
Subject: [Microscopy] mag distribution of SEM images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Listers: Good Day, eh?

While fighting our current 119 cm (3.9 feet) of snow (and counting) my
mind began to wander and I became curious about the distribution of
magnification in the images we've acquired with our (tungsten-based)
SEM. Since we've logged all the images it wasn't hard to find out:

http://www.mta.ca/dmf/sem_mag_dist.html

We do SEM for a lot of different departments, but the bulk of our work
is biological, with heavy emphasis on microorganisms, particularly
diatoms. My questions to others out there who might have been in similar
circumstances are:

1. Do you feel that this sort of distribution is determined more by the
instrument capabilities, or the inherent properties of the specimens
observed?
2. If we were go for a ~5-10X $$$$ investment in a field emission scope
a) would this distribution of magnifications change significantly and b)
would the upgrade be demonstrably worthwhile?

I realize there is a big pile of ifs/ands/buts in these questions - I'm
just looking for people who are willing to share thoughts, particularly
if they have experience in taking this route.

Thanks as always,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

After twelve years of therapy my
psychiatrist said something that
brought tears to my eyes.
He said, "No hablo ingles."


==============================Original Headers==============================
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From: dsherman-at-purdue.edu
Date: Thu, 3 Mar 2011 09:27:10 -0600
Subject: [Microscopy] Re: mag distribution of SEM images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The enhanced capabilities of a FESEM, especially if it also has an in-lens
detector and perhaps EDX and/or cryo capabilities, will not only do all that
your present instruments does, but lots more. Thus the prospect of many new
users who would find less satisfactory results with your present instrument.
Larger user base means increased use and thus more revenue that hopefully
will cover significantly increased service contract cost.

However, I would encourage holding on to your other scope if at all
possible. It would make a great training scope and useful in its current
role of lower magnification imaging.

Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/


} From: "jehrman-at-mta.ca" {jehrman-at-mta.ca}
} Reply-To: "jehrman-at-mta.ca" {jehrman-at-mta.ca}
} Date: Thu, 3 Mar 2011 09:34:43 -0500
} To: Debby Sherman {dsherman-at-purdue.edu}
} Subject: [Microscopy] mag distribution of SEM images
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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}
} Listers: Good Day, eh?
}
} While fighting our current 119 cm (3.9 feet) of snow (and counting) my
} mind began to wander and I became curious about the distribution of
} magnification in the images we've acquired with our (tungsten-based)
} SEM. Since we've logged all the images it wasn't hard to find out:
}
} http://www.mta.ca/dmf/sem_mag_dist.html
}
} We do SEM for a lot of different departments, but the bulk of our work
} is biological, with heavy emphasis on microorganisms, particularly
} diatoms. My questions to others out there who might have been in similar
} circumstances are:
}
} 1. Do you feel that this sort of distribution is determined more by the
} instrument capabilities, or the inherent properties of the specimens
} observed?
} 2. If we were go for a ~5-10X $$$$ investment in a field emission scope
} a) would this distribution of magnifications change significantly and b)
} would the upgrade be demonstrably worthwhile?
}
} I realize there is a big pile of ifs/ands/buts in these questions - I'm
} just looking for people who are willing to share thoughts, particularly
} if they have experience in taking this route.
}
} Thanks as always,
}
} Jim
}
} --
}
} James M. Ehrman
} Digital Microscopy Facility
} Mount Allison University
} 63B York St.
} Sackville, NB E4L 1G7
} CANADA
}
} phone: 506-364-2519
} fax: 506-364-2505
} email: jehrman-at-mta.ca
} www: http://www.mta.ca/dmf
}
} After twelve years of therapy my
} psychiatrist said something that
} brought tears to my eyes.
} He said, "No hablo ingles."
}
}
} ==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 3 Mar 2011 09:46:31 -0600
Subject: [Microscopy] viaWWW:Summer Intern Opportunity at Abbott Labs

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Email: andrew.d.vogt-at-abbott.com Name: Andy

Organization: Abbott

Title-Subject: [Filtered] Summer Intern Opportunity

Message: Abbott is seeking a summer intern student in its Global
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understanding of single-particle interactions and phase-separated
materials. A candidate should be enthusiastic, self motivating, works
well on teams, has excellent writing and communication skills, as well
as has a strong desire to carry out an aggressive research project. This
student should have a basic knowledge of chemical principles, materials
science and will be enrolled in school in Fall 2011. Experience using
atomic force microscopy is strongly preferred. To apply, visit
www.abbott.com/careers, click student and internship program. Look for
Science Intern and apply directly.

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From: kenconverse-at-qualityimages.biz
Date: Thu, 3 Mar 2011 10:23:25 -0600
Subject: [Microscopy] mag distribution of SEM images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jim,
Thanks for the information. As I've had posted on my website for years,
"Our experience has been that many SEMs are typically operated at or below
2,500X and rarely over 10,000X. If you don't require the very high
resolution of field emission, the capabilities of an environmental SEM or
the ability to remotely operate the system, your familiar and faithful SEM
may still be your best friend."

Debbie has a point that the FESEM may open up new users, but x-ray still has
volume limitations and low kV analysis still has limitations, particularly
if you want quantitative results. My feeling is that biological, geological
and failure analysis users are probably not going to be big users of the new
capabilities. The big users will most likely be microelectronics, MEMS and
nano-tube/particle studies. If these folks are in your system, they will
love you.

If you can further parse your data, it would be interesting to see the
breakdown of users at 10kx and up. Butterfly scales are fun, but how many
micrographs of diatoms are in that range vs ICs and nanoparticles?

I'd love to hear from more people about this because generally it was only
my IC customers who pushed mag all the time.

Our local ski area is claiming over 100" (254cm) so far for the season, but
I think they get all their data from the summit. My yard is still looking
like a good winter, though. I was never fond of those brown and gray
winters that we generally had in south-central Pennsylvania. It's bright
and beautiful outside my windows today.

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
Fax 207-647-2688
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: jehrman-at-mta.ca [mailto:jehrman-at-mta.ca]
Sent: Thursday, March 03, 2011 9:35 AM
To: kenconverse-at-qualityimages.biz

Listers: Good Day, eh?

While fighting our current 119 cm (3.9 feet) of snow (and counting) my
mind began to wander and I became curious about the distribution of
magnification in the images we've acquired with our (tungsten-based)
SEM. Since we've logged all the images it wasn't hard to find out:

http://www.mta.ca/dmf/sem_mag_dist.html

We do SEM for a lot of different departments, but the bulk of our work
is biological, with heavy emphasis on microorganisms, particularly
diatoms. My questions to others out there who might have been in similar
circumstances are:

1. Do you feel that this sort of distribution is determined more by the
instrument capabilities, or the inherent properties of the specimens
observed?
2. If we were go for a ~5-10X $$$$ investment in a field emission scope
a) would this distribution of magnifications change significantly and b)
would the upgrade be demonstrably worthwhile?

I realize there is a big pile of ifs/ands/buts in these questions - I'm
just looking for people who are willing to share thoughts, particularly
if they have experience in taking this route.

Thanks as always,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

After twelve years of therapy my
psychiatrist said something that
brought tears to my eyes.
He said, "No hablo ingles."


==============================Original Headers==============================
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==============================Original Headers==============================
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From: david.knecht-at-uconn.edu
Date: Thu, 3 Mar 2011 10:50:42 -0600
Subject: [Microscopy] Single molecule imaging

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If you are doing single molecule fluorescence microscopy (TIRF for example) on a stationary specimen, how would you determine the expected image of that single molecule in the camera given the shape of the Airy disk, the magnification/NA of hte objective, camera pixel size etc. I am trying to understand whether the Airy diffraction pattern would all be present in a single pixel or whether the central maximum is more than a single pixel and whether the higher orders are visible. Thanks- Dave

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: rfklie-at-uic.edu
Date: Thu, 3 Mar 2011 11:07:15 -0600
Subject: [Microscopy] Job opening in aberration corrected STEM at UIC

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Dear fellow Listers;

could you please forward this email to anybody who might be interested
in this position?

Thanks
Robert

Research Assistant Professor Position in Aberration-Corrected Scanning
Transmission Electron Microscopy

**An Research Assistant Professor position is available in the Nanoscale
Physics Group lead by Professor Robert F. Klie at the University of
Illinois at Chicago to work on the application of atomic-resolution
Z-contrast and annular bright-field imaging, as well as electron
energy-loss spectroscopy (EELS) to functional nano-materials. The
successful candidate will working with the group’s new
aberration-corrected cold-field emission STEM (the JEOL ARM200-CF) with
sub-Å and sub-eV resolution, equipped with several in-situ holders.


Candidates should have a Ph.D. in Physics, Materials Science or a
related discipline. The position requires extensive experience in
transmission electron microscopy and electron energy-loss spectroscopy.
Experience working with aberration-corrected scanning transmission
electron microscopy is also preferred. This position is available
starting July 1, 2011, and remains open until it is filled. For fullest
consideration apply by May 15, 2011. The salary will range between
$55,000 and $75,000 depending on the level of experience and seniority.


Interested candidates can apply online at http://jobs.uic.edu. Please
submit a cover letter, CV with a complete list of publications, and
contact information of three professional references. Questions about
the position should be directed to the search committee chair (Prof.
Robert Klie; rfklie-at-uic.edu). UIC is an AA/EOE



--
Robert F. Klie, PhD
Assistant Professor
University of Illinois at Chicago
Department of Physics
Chicago, IL 60607
Tel: 312-996-6064
Fax: 312-996-9016

Editor
Journal of Undergraduate Research
Website {http://jur.phy.uic.edu}

Past President
Midwest Microscopy and Microanalysis Society (M^3 S)
Website {http://midwestmicroscopy.org}

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From: Bryan.Tracy-at-spansion.com
Date: Thu, 3 Mar 2011 11:14:15 -0600
Subject: [Microscopy] Video printer repair?

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Hi folks,

I know this sounds like I am from the Dark Ages, but does
anyone know where I can get a Seikosha VP3500 video printer repaired?

It has a pathological paper jam that is going to require open heart surgery.

thanks a lot


bryan tracy

Spansion, Sunnyvale



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From: john.oreopoulos-at-utoronto.ca
Date: Thu, 3 Mar 2011 11:22:05 -0600
Subject: [Microscopy] Re: Single molecule imaging

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David, here's a quick way to estimate this:

Use the Rayleigh criterion to calculate how large the central maximum peak of Airy disk (of a sub-diffraction sized object) will appear for a given objective numerical aperture (NA) and emission wavelength (lambda). Suppose you're imaging the single-molecule fluorescence through a bandpass filter which is say 50 nm wide. Take the central wavelength of this bandpass to represent lambda. Alternatively, you can take lambda to be the known peak wavelength in the emission spectrum of the fluorescent molecule

The Rayleigh criterion says the width of the Airy disk peak will be

r = 1.22(lambda)/2NA

For example, let's say I'm using a 60X, 1.45 NA TIRF objective, and the central wavelength of my bandpass is 500 nm. In this case, r would be ~ 210 nm.

Now, to determine how big the image of the Airy disk appears on your camera, you need to determine the back-projected size of your camera pixels on the sample image plane. This can be estimated by dividing the physical pixel size on the camera chip by the magnification of the objective. Again, as an example, suppose you're using an EMCCD camera which uses the E2V chip which I think has pixels with a physical size of 16x16 micrometers. With the same objective (60X, 1.45 NA), the back-projected size of the pixels on the sample plane is (16/60) ~ 267 nm x 267 nm.

In this example, you can see that your Airy disk pattern, at least the central peak, will only span about 1 pixel across. If the molecule happens to sit on a position between two pixels, you'll see signal in two adjacent pixels (or 4x4 if you include both dimensions). It's been my experience that the other side lobes of the Airy disk are not usually observed in single-molecule imaging because they are much weaker in intensity.

This example also points out why some researchers usually add some additional magnification into the imaging system (either by an optovar lens or a 1.5X-2.0X lens included in the microscope body). For some single-molecule techniques, such as FIONA ("fluorescence imaging with one nanometer accuracy") or PALM/STORM imaging, you need to sample the Airy disk patter just a bit more so that a proper fitting of the pattern can be done to permit highly accurate localization precision.

There might be other ways to do this calculation as well. I would add one note of caution. The NA and magnification printed out the outside barrel of your objective are not always exactly what they say they are. There is some variation from objective to objective of the same make and model. There are ways to measure both parameters. Contact me offline if you want the details. Take the method described above to give you only a ballpark idea.

John Oreopoulos
Research Assistant
Spectral Applied Research
Richmond Hill, Ontario
Canada
www.Spectral.ca



On 2011-03-03, at 11:55 AM, david.knecht-at-uconn.edu wrote:

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} If you are doing single molecule fluorescence microscopy (TIRF for example) on a stationary specimen, how would you determine the expected image of that single molecule in the camera given the shape of the Airy disk, the magnification/NA of hte objective, camera pixel size etc. I am trying to understand whether the Airy diffraction pattern would all be present in a single pixel or whether the central maximum is more than a single pixel and whether the higher orders are visible. Thanks- Dave
}
} Dr. David Knecht
} Department of Molecular and Cell Biology
} Co-head Flow Cytometry and Confocal Microscopy Facility
} U-3125
} 91 N. Eagleville Rd.
} University of Connecticut
} Storrs, CT 06269
} 860-486-2200
} 860-486-4331 (fax)
}
}
}
}
} ==============================Original Headers==============================
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From: jquinn-at-ms.cc.sunysb.edu
Date: Thu, 3 Mar 2011 12:51:23 -0600
Subject: [Microscopy] Fwd: mag distribution of SEM images

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Just my two cents-

Build it, and they will come.
If you have a SFEG-SEM, then
users will also take hi-mag
images, when applicable.

Equally important, is having
a range of detectors and high-voltages.

-JQuinn

PS: OoO counter started.

} Date: Thu, 3 Mar 2011 08:43:45 -0600
} To: jquinn-at-ms.cc.sunysb.edu
} From: jehrman-at-mta.ca
} Subject: [Microscopy] mag distribution of SEM images
}
} Listers: Good Day, eh?
}
} While fighting our current 119 cm (3.9 feet) of snow (and counting) my
} mind began to wander and I became curious about the distribution of
} magnification in the images we've acquired with our (tungsten-based)
} SEM. Since we've logged all the images it wasn't hard to find out:
}
} http://www.mta.ca/dmf/sem_mag_dist.html
}
} We do SEM for a lot of different departments, but the bulk of our work
} is biological, with heavy emphasis on microorganisms, particularly
} diatoms. My questions to others out there who might have been in similar
} circumstances are:
}
} 1. Do you feel that this sort of distribution is determined more by the
} instrument capabilities, or the inherent properties of the specimens
} observed?
} 2. If we were go for a ~5-10X $$$$ investment in a field emission scope
} a) would this distribution of magnifications change significantly and b)
} would the upgrade be demonstrably worthwhile?
}
} I realize there is a big pile of ifs/ands/buts in these questions - I'm
} just looking for people who are willing to share thoughts, particularly
} if they have experience in taking this route.
}
} Thanks as always,
}
} Jim



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From: tina-at-pbrc.hawaii.edu
Date: Thu, 3 Mar 2011 12:55:17 -0600
Subject: [Microscopy] mag distribution of SEM images

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I'm with Debby. Since we can get better than 1nm resolution and go up to
800,000x mag, we do. Our biologists are seeing things they've never seen
before (look at the detail on this image from our S-4800
http://www.sciencemag.org/content/331/6016.cover-expansion ), and we have
a lot more engineers coming in to look at thin films for photovoltaic
cells, hydrogen fuel cells, etc. Sure, the diatom folks continue to use
the lower mags, but I find them sneaking up to look at everything in
better detail and perhaps finding new connections between those diatoms
and other microorganisms. Hey, we can see bacteriophage erupting from
cells in incredible detail. What's not to love? But, try to keep the old
standby, too.

X-from Honolulu where there is absolutely no sign of snow and it's 78F,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: modla-at-dbi.udel.edu
Date: Thu, 3 Mar 2011 13:56:58 -0600
Subject: [Microscopy] EFTEM Sample Prep

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Hi,

I was wondering if anyone knew of any books or references that give
processing protocols designed to preserve specific elements (ie. Ni, Se,
etc.) in biological tissues for conducting energy filtered TEM on
ultrathin resin sections.

Thanks,

Shannon Modla
Research Associate
Delaware Biotechnology Institute
15 Innovation Way, Suite 117
Newark, DE 19711

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 3 Mar 2011 18:39:52 -0600
Subject: [Microscopy] viaWWW:Electron microscopy specialist position available, Montclair

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Email: brachfelds-at-mail.montclair.edu Name: Stefanie Brachfeld

Organization: Montclair State University

Title-Subject: [Filtered] Job announcement, Electron Microscopy Specialist

Message: Electron microscopy specialist position available, Montclair
State University

We seek an electron microscopy specialist to support research and
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Responsibilities of the position include:
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From: r-holdford-at-ti.com
Date: Thu, 3 Mar 2011 19:06:56 -0600
Subject: [Microscopy] 2nd Call for Papers for the Texas Society for Microscopy Spring 2011

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All: I invite you explore our web site at
http://www.texasmicroscopy.org/ to read the call for papers and
see the activities planned for our Spring meeting. Registration
and abstract forms are available on the site and students are
encouraged to participate.

--
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Becky Holdford (r-holdford-at-ti.com)
214-567-0360
SC Packaging FA
Texas Instruments, Inc.
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Dallas, TX 75243
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From: eikonika-at-otenet.gr
Date: Fri, 4 Mar 2011 02:52:55 -0600
Subject: [Microscopy] Ultra high resolution in biology SEM: No, thanks

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Dear Jim

I read with interest your recent posting on magnifications people use in
your SEM lab, as well as the comments of other colleagues, and I would like
to add a few words:
To your first question if magnification is determined more by the instrument
capabilities or the inherent properties of the specimens observed, I would
say frankly: It's the specimens!

I went through your site and saw your very decent micrographs that combine a
fine resolution with a nice depth of field. And saw that your Jeol
instrument has a 3-4 nm resolution limit that is not so far from Tina's
Hitachi with 1nm resolution. Do you think this can make a great difference
in your work?

We all know that to reach these low numbers we need to have a perfectly
working source of electrons, a perfectly aligned scope, a perfectly attached
and coated specimen (like the ones for resolution assessment) and a perfect
focus and stigma etc. Obviously imperfections on these parameters will stop
us well before the ultimate resolution, and usually at around 10nm.

Biology microscopists are like detectives, probably more than colleagues
from other fields of microscopy. We start from a live organism where the
cellular functions including plasma membrane morphology are changing every
little fraction of a second. We have to kill this organism as soon as
possible and fix it, then to take out the 70 or 80% of water and liquid from
around and inside it, and then coat it with metal (if we want to enjoy the
clear high resolution images of coated specimens as opposed to native state
cells viewed in low vacuum instruments). Then we take images and we try to
guess what the morphology can tell as in relation to the cell's function.

To me sounds impossible that after all these torments the morphology of the
cell will stay intact at the level of 1 or 2nm that is really the size of
big biomolecules. And I think that if I could go so small in cell specimens
I would feel really embarrassed: For I would have to describe structures
appearing at this level that could be mostly artifacts. For instance the
cover on Science magazine that Tina showed us is a microbe with its surface
having thousands of tiny grains at the size of a few nanometers. Do these
grains represent any real structures or they are artifacts? And if the
micrograph is only for decoration, that's fine. But f it is part of the
research findings, it could be a trouble for the researcher to comment on
it. Nevertheless here I have to admit that my SEM experience is limited to
eukaryotic cells.

It's amazing how we tend to get crazy with numbers and magnifications. It
happened to me several times to take a high mag picture on a biological
specimen (high for me is like 30K) only to find out afterwards that this
picture was not any better from a 5K one. For obtaining a nice clear
micrograph there are other parameters more important than the instrument's
ultimate resolution. Apart from those already mentioned it is also the
averaging and oversampling parameters -in other words. how much time the
electron beam scans the specimen. And of course the depth of field is
critical for the uneven surfaces found in biological samples. For me a real
improvement in biology SEM would be a substantial increase in the depth of
field, so that more of the specimen can be in focus. However, I have to
admit that my knowledge

While writing these lines most of you guys from America are still sleeping,
so I hope this morning message will not spoil your mood. Have a nice day
from the ever shiny Athens.

yorgos
Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
eikonika-at-otenet.gr
www.aim.cat
***********************************

The Microscopy ListServer -- CoSponsor: The Microscopy Society of America

Listers: Good Day, eh?

While fighting our current 119 cm (3.9 feet) of snow (and counting) my
mind began to wander and I became curious about the distribution of
magnification in the images we've acquired with our (tungsten-based)
SEM. Since we've logged all the images it wasn't hard to find out:

http://www.mta.ca/dmf/sem_mag_dist.html

We do SEM for a lot of different departments, but the bulk of our work
is biological, with heavy emphasis on microorganisms, particularly
diatoms. My questions to others out there who might have been in similar
circumstances are:

1. Do you feel that this sort of distribution is determined more by the
instrument capabilities, or the inherent properties of the specimens
observed?
2. If we were go for a ~5-10X $$$$ investment in a field emission scope
a) would this distribution of magnifications change significantly and b)
would the upgrade be demonstrably worthwhile?

I realize there is a big pile of ifs/ands/buts in these questions - I'm
just looking for people who are willing to share thoughts, particularly
if they have experience in taking this route.

Thanks as always,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

After twelve years of therapy my
psychiatrist said something that
brought tears to my eyes.
He said, "No hablo ingles."




The enhanced capabilities of a FESEM, especially if it also has an in-lens
detector and perhaps EDX and/or cryo capabilities, will not only do all that
your present instruments does, but lots more. Thus the prospect of many new
users who would find less satisfactory results with your present instrument.
Larger user base means increased use and thus more revenue that hopefully
will cover significantly increased service contract cost.

However, I would encourage holding on to your other scope if at all
possible. It would make a great training scope and useful in its current
role of lower magnification imaging.

Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy


Jim,
Thanks for the information. As I've had posted on my website for years,
"Our experience has been that many SEMs are typically operated at or below
2,500X and rarely over 10,000X. If you don't require the very high
resolution of field emission, the capabilities of an environmental SEM or
the ability to remotely operate the system, your familiar and faithful SEM
may still be your best friend."

Debbie has a point that the FESEM may open up new users, but x-ray still has
volume limitations and low kV analysis still has limitations, particularly
if you want quantitative results. My feeling is that biological, geological
and failure analysis users are probably not going to be big users of the new
capabilities. The big users will most likely be microelectronics, MEMS and
nano-tube/particle studies. If these folks are in your system, they will
love you.

If you can further parse your data, it would be interesting to see the
breakdown of users at 10kx and up. Butterfly scales are fun, but how many
micrographs of diatoms are in that range vs ICs and nanoparticles?

I'd love to hear from more people about this because generally it was only
my IC customers who pushed mag all the time.

Our local ski area is claiming over 100" (254cm) so far for the season, but
I think they get all their data from the summit. My yard is still looking
like a good winter, though. I was never fond of those brown and gray
winters that we generally had in south-central Pennsylvania. It's bright
and beautiful outside my windows today.

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
Fax 207-647-2688
kenconverse-at-qualityimages.biz
qualityimages.biz


Just my two cents-

Build it, and they will come.
If you have a SFEG-SEM, then
users will also take hi-mag
images, when applicable.

Equally important, is having
a range of detectors and high-voltages.

-JQuinn


I'm with Debby. Since we can get better than 1nm resolution and go up to
800,000x mag, we do. Our biologists are seeing things they've never seen
before (look at the detail on this image from our S-4800
http://www.sciencemag.org/content/331/6016.cover-expansion ), and we have
a lot more engineers coming in to look at thin films for photovoltaic
cells, hydrogen fuel cells, etc. Sure, the diatom folks continue to use
the lower mags, but I find them sneaking up to look at everything in
better detail and perhaps finding new connections between those diatoms
and other microorganisms. Hey, we can see bacteriophage erupting from
cells in incredible detail. What's not to love? But, try to keep the old
standby, too.

X-from Honolulu where there is absolutely no sign of snow and it's 78F,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************


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From: I.J.Portman-at-warwick.ac.uk
Date: Fri, 4 Mar 2011 03:45:42 -0600
Subject: [Microscopy] Semi Permeable EM support membranes

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I've a student who's trying to do what amounts to dialysis on a support
membrane. She has a protocol which requires her marine plankton samples
to be dotted onto a section of membrane floating on buffer, the sea salt
then allowed to dialyse through and the membrane floated down onto grids
for analysis ( which will include EDX as well as plain TEM ). Her
supervisor gave her a protocol using a nitrocellulose dissolved in a
mixture of acetone and dichloroethane dropped onto water to make the
membrane. With a lot of fiddling we found a solvent ratio that allows
buffer exchange to occur but the resulting membrane is fragile under the
beam and far from flat. Carbon coating strengthens it enough to be
usable but it still looks like a bad micrograph of a sick sponge.

Has anyone tried anything similar and had better luck in producing a
worthwhile coating? For various reasons they want to avoid pelleting and
resuspending as a cleanup technique.

Cheers

Ian Portman

Imaging Suite Manager
School of Life Sciences
University of Warwick
http://www2.warwick.ac.uk/fac/sci/lifesci/facilities/imaging




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From: RossLM-at-missouri.edu
Date: Fri, 4 Mar 2011 05:42:32 -0600
Subject: [Microscopy] Re: Ultra high resolution in biology SEM: No, thanks

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Very nicely stated Yorgos. My experience in BioSEM is very limited, but I
too was wondering about the "bumps" in the Science cover image, whether it
could be metallic coating, an artifact or real.


On 3/4/11 2:53 AM, "eikonika-at-otenet.gr" {eikonika-at-otenet.gr} wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Dear Jim
}
} I read with interest your recent posting on magnifications people use in
} your SEM lab, as well as the comments of other colleagues, and I would like
} to add a few words:
} To your first question if magnification is determined more by the instrument
} capabilities or the inherent properties of the specimens observed, I would
} say frankly: It's the specimens!
}
} I went through your site and saw your very decent micrographs that combine a
} fine resolution with a nice depth of field. And saw that your Jeol
} instrument has a 3-4 nm resolution limit that is not so far from Tina's
} Hitachi with 1nm resolution. Do you think this can make a great difference
} in your work?
}
} We all know that to reach these low numbers we need to have a perfectly
} working source of electrons, a perfectly aligned scope, a perfectly attached
} and coated specimen (like the ones for resolution assessment) and a perfect
} focus and stigma etc. Obviously imperfections on these parameters will stop
} us well before the ultimate resolution, and usually at around 10nm.
}
} Biology microscopists are like detectives, probably more than colleagues
} from other fields of microscopy. We start from a live organism where the
} cellular functions including plasma membrane morphology are changing every
} little fraction of a second. We have to kill this organism as soon as
} possible and fix it, then to take out the 70 or 80% of water and liquid from
} around and inside it, and then coat it with metal (if we want to enjoy the
} clear high resolution images of coated specimens as opposed to native state
} cells viewed in low vacuum instruments). Then we take images and we try to
} guess what the morphology can tell as in relation to the cell's function.
}
} To me sounds impossible that after all these torments the morphology of the
} cell will stay intact at the level of 1 or 2nm that is really the size of
} big biomolecules. And I think that if I could go so small in cell specimens
} I would feel really embarrassed: For I would have to describe structures
} appearing at this level that could be mostly artifacts. For instance the
} cover on Science magazine that Tina showed us is a microbe with its surface
} having thousands of tiny grains at the size of a few nanometers. Do these
} grains represent any real structures or they are artifacts? And if the
} micrograph is only for decoration, that's fine. But f it is part of the
} research findings, it could be a trouble for the researcher to comment on
} it. Nevertheless here I have to admit that my SEM experience is limited to
} eukaryotic cells.
}
} It's amazing how we tend to get crazy with numbers and magnifications. It
} happened to me several times to take a high mag picture on a biological
} specimen (high for me is like 30K) only to find out afterwards that this
} picture was not any better from a 5K one. For obtaining a nice clear
} micrograph there are other parameters more important than the instrument's
} ultimate resolution. Apart from those already mentioned it is also the
} averaging and oversampling parameters -in other words. how much time the
} electron beam scans the specimen. And of course the depth of field is
} critical for the uneven surfaces found in biological samples. For me a real
} improvement in biology SEM would be a substantial increase in the depth of
} field, so that more of the specimen can be in focus. However, I have to
} admit that my knowledge
}
} While writing these lines most of you guys from America are still sleeping,
} so I hope this morning message will not spoil your mood. Have a nice day
} from the ever shiny Athens.
}
} yorgos
} Dr Yorgos Nikas
} Athens Innovative Microscopy
} Skra 36 Voula 16673 GREECE
}
} Tel/fax +30 210 8957677
} mobile +30 6945 107477
} eikonika-at-otenet.gr
} www.aim.cat
} ***********************************
}
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Listers: Good Day, eh?
}
} While fighting our current 119 cm (3.9 feet) of snow (and counting) my
} mind began to wander and I became curious about the distribution of
} magnification in the images we've acquired with our (tungsten-based)
} SEM. Since we've logged all the images it wasn't hard to find out:
}
} http://www.mta.ca/dmf/sem_mag_dist.html
}
} We do SEM for a lot of different departments, but the bulk of our work
} is biological, with heavy emphasis on microorganisms, particularly
} diatoms. My questions to others out there who might have been in similar
} circumstances are:
}
} 1. Do you feel that this sort of distribution is determined more by the
} instrument capabilities, or the inherent properties of the specimens
} observed?
} 2. If we were go for a ~5-10X $$$$ investment in a field emission scope
} a) would this distribution of magnifications change significantly and b)
} would the upgrade be demonstrably worthwhile?
}
} I realize there is a big pile of ifs/ands/buts in these questions - I'm
} just looking for people who are willing to share thoughts, particularly
} if they have experience in taking this route.
}
} Thanks as always,
}
} Jim



==============================Original Headers==============================
6, 29 -- From RossLM-at-missouri.edu Fri Mar 4 05:42:31 2011
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From: jfmjfm-at-umich.edu
Date: Fri, 4 Mar 2011 06:24:02 -0600
Subject: [Microscopy] Re: mag distribution of SEM images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Also, an FESEM is MUCH easier to operate at high mag.
You can wind most up to 50,000 times plus without even breaking a sweat!

I would like to shift the discussion to displaying horizontal field width and changing mag by steps of horizontal field width.
Magnification has been meaningless for many years!


John Mansfield PhD Cphys MInstP
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
Phone: (734) 936-3352 FAX (734) 763-2282
Cell. Phone: (734) 834-3913
(Leaving a phone message at 936-3352 is preferable to 834-3913)
Email: jfmjfm-at-umich.edu
URL: http://emalwww.engin.umich.edu/people/jfmjfm/jfmjfm.html
Location: N 42 ° 17' 38.3" (42 ° 17.6391' ) W 83 ° 42' 38.6" (-83 ° 42.6439')
AIM: thejfmjfm
Yahoo: thejfmjfm
Skype: thejfmjfm

Home address:
4304 Spring Lake Boulevard
Ann Arbor MI 48108-9657
Phone (734) 994-3096
Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83 ° 45.7980')

Please note: Electronic Mail is not secure, but should be read several times every day, and should definitely be used for urgent or sensitive issues.






==============================Original Headers==============================
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From: dsherman-at-purdue.edu
Date: Fri, 4 Mar 2011 07:54:51 -0600
Subject: [Microscopy] mag distribution of SEM images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I agree with the statement referring to magnification. I find it a useful
number to remember so that images are taken at an identical horizontal Field
Width but only for that purpose. I always include in all reports the
statement:
"Note that magnifications are accurate when images are displayed at 30x26cm
size. Micron bars are accurate at any display size."

Too many times I have people coming to me saying: "I want images with a 1µm
bar." Now that is fine but that notation potentially represents a number of
different magnifications. Thus it is nice to know accurate HFW or
magnification from previous images so that future images can be captured at
similar conditions.

Debby

--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/


} From: "jfmjfm-at-umich.edu" {jfmjfm-at-umich.edu}
} Reply-To: "jfmjfm-at-umich.edu" {jfmjfm-at-umich.edu}
} Date: Fri, 4 Mar 2011 07:25:34 -0500
} To: Debby Sherman {dsherman-at-purdue.edu}
} Subject: [Microscopy] Re: mag distribution of SEM images
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Also, an FESEM is MUCH easier to operate at high mag.
} You can wind most up to 50,000 times plus without even breaking a sweat!
}
} I would like to shift the discussion to displaying horizontal field width and
} changing mag by steps of horizontal field width.
} Magnification has been meaningless for many years!
}
}
} John Mansfield PhD Cphys MInstP
} North Campus Electron Microbeam Analysis Laboratory
} 417 SRB, University of Michigan
} 2455 Hayward, Ann Arbor MI 48109-2143 USA
} Phone: (734) 936-3352 FAX (734) 763-2282
} Cell. Phone: (734) 834-3913
} (Leaving a phone message at 936-3352 is preferable to 834-3913)
} Email: jfmjfm-at-umich.edu
} URL: http://emalwww.engin.umich.edu/people/jfmjfm/jfmjfm.html
} Location: N 42 ° 17' 38.3" (42 ° 17.6391' ) W 83 ° 42' 38.6" (-83 °
} 42.6439')
} AIM: thejfmjfm
} Yahoo: thejfmjfm
} Skype: thejfmjfm
}
} Home address:
} 4304 Spring Lake Boulevard
} Ann Arbor MI 48108-9657
} Phone (734) 994-3096
} Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83 °
} 45.7980')
}
} Please note: Electronic Mail is not secure, but should be read several times
} every day, and should definitely be used for urgent or sensitive issues.
}
}
}
}
}
}
} ==============================Original Headers==============================
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8, 31 -- From dsherman-at-purdue.edu Fri Mar 4 07:54:51 2011
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8, 31 -- "message to: MSA list"
8, 31 -- {microscopy-at-microscopy.com}
8, 31 -- Date: Fri, 4 Mar 2011 08:54:46 -0500
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From: jfmjfm-at-umich.edu
Date: Fri, 4 Mar 2011 08:27:23 -0600
Subject: [Microscopy] mag distribution of SEM images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Yes, it is just a simple software tweak. You could have the option of magnifications or HFW
e.g.
200x 400x 800x etc.
or something like 200µm, 100µm, 50µm, 25µm, etc.
It's up to the manufacturers to implement it.
Please guys!

--
John Mansfield PhD Cphys MInstP
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
Phone: (734) 936-3352 FAX (734) 763-2282
Cell. Phone: (734) 834-3913
(Leaving a phone message at 936-3352 is preferable to 834-3913)
Email: jfmjfm-at-umich.edu
URL: http://emalwww.engin.umich.edu/people/jfmjfm/jfmjfm.html
Location: N 42 ° 17' 38.3" (42 ° 17.6391' ) W 83 ° 42' 38.6" (-83 ° 42.6439')
AIM: thejfmjfm
Yahoo: thejfmjfm
Skype: thejfmjfm

Home address:
4304 Spring Lake Boulevard
Ann Arbor MI 48108-9657
Phone (734) 994-3096
Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83 ° 45.7980')

Please note: Electronic Mail is not secure, but should be read several times every day, and should definitely be used for urgent or sensitive issues.




On Mar 4, 2011, at 8:54 AM, Sherman, Debra M wrote:

} I agree with the statement referring to magnification. I find it a useful
} number to remember so that images are taken at an identical horizontal Field
} Width but only for that purpose. I always include in all reports the
} statement:
} "Note that magnifications are accurate when images are displayed at 30x26cm
} size. Micron bars are accurate at any display size."
}
} Too many times I have people coming to me saying: "I want images with a 1µm
} bar." Now that is fine but that notation potentially represents a number of
} different magnifications. Thus it is nice to know accurate HFW or
} magnification from previous images so that future images can be captured at
} similar conditions.
}
} Debby
}
} --
} Debby Sherman, Director Phone: 765-494-6666
} Life Science Microscopy Facility FAX: 765-494-5896
} Purdue University E-mail: dsherman-at-purdue.edu
} S-052 Whistler Building
} 170 S. University Street
} West Lafayette, IN 47907
} http://www.ag.purdue.edu/facilities/microscopy/
}
}
} } From: "jfmjfm-at-umich.edu" {jfmjfm-at-umich.edu}
} } Reply-To: "jfmjfm-at-umich.edu" {jfmjfm-at-umich.edu}
} } Date: Fri, 4 Mar 2011 07:25:34 -0500
} } To: Debby Sherman {dsherman-at-purdue.edu}
} } Subject: [Microscopy] Re: mag distribution of SEM images
} }
} }
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Also, an FESEM is MUCH easier to operate at high mag.
} } You can wind most up to 50,000 times plus without even breaking a sweat!
} }
} } I would like to shift the discussion to displaying horizontal field width and
} } changing mag by steps of horizontal field width.
} } Magnification has been meaningless for many years!
} }
} }
} } John Mansfield PhD Cphys MInstP
} } North Campus Electron Microbeam Analysis Laboratory
} } 417 SRB, University of Michigan
} } 2455 Hayward, Ann Arbor MI 48109-2143 USA
} } Phone: (734) 936-3352 FAX (734) 763-2282
} } Cell. Phone: (734) 834-3913
} } (Leaving a phone message at 936-3352 is preferable to 834-3913)
} } Email: jfmjfm-at-umich.edu
} } URL: http://emalwww.engin.umich.edu/people/jfmjfm/jfmjfm.html
} } Location: N 42 ° 17' 38.3" (42 ° 17.6391' ) W 83 ° 42' 38.6" (-83 °
} } 42.6439')
} } AIM: thejfmjfm
} } Yahoo: thejfmjfm
} } Skype: thejfmjfm
} }
} } Home address:
} } 4304 Spring Lake Boulevard
} } Ann Arbor MI 48108-9657
} } Phone (734) 994-3096
} } Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83 °
} } 45.7980')
} }
} } Please note: Electronic Mail is not secure, but should be read several times
} } every day, and should definitely be used for urgent or sensitive issues.
} }
} }
} }
} }
} }
} }
} } ==============================Original Headers==============================
} } 11, 20 -- From jfmjfm-at-umich.edu Fri Mar 4 06:24:02 2011
} } 11, 20 -- Received: from tombraider.mr.itd.umich.edu (smtp.mail.umich.edu
} } [141.211.12.86])
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} } p24CO2PE013323
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} } 11, 20 -- Authuser jfmjfm;
} } 11, 20 -- 4 Mar 2011 07:24:00 EST
} } 11, 20 -- Subject: Re: [Microscopy] mag distribution of SEM images
} } 11, 20 -- Mime-Version: 1.0 (Apple Message framework v1082)
} } 11, 20 -- Content-Type: text/plain; charset=iso-8859-1
} } 11, 20 -- From: John Mansfield {jfmjfm-at-umich.edu}
} } 11, 20 -- In-Reply-To: {201103031902.p23J2MaQ021471-at-ns.microscopy.com}
} } 11, 20 -- Date: Fri, 4 Mar 2011 07:23:59 -0500
} } 11, 20 -- Message-Id: {1DC6548B-6CFB-4492-BE39-BCD29E6E2B49-at-umich.edu}
} } 11, 20 -- References: {201103031902.p23J2MaQ021471-at-ns.microscopy.com}
} } 11, 20 -- To: microscopy-at-microscopy.com
} } 11, 20 -- X-Mailer: Apple Mail (2.1082)
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}



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11, 21 -- Subject: Re: [Microscopy] Re: mag distribution of SEM images
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11, 21 -- From: John Mansfield {jfmjfm-at-umich.edu}
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From: protrain-at-emcourses.com
Date: Fri, 4 Mar 2011 08:48:50 -0600
Subject: [Microscopy] Re: Ultra high resolution in biology SEM: No, thanks

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Lou and Yorgos

All of your points you make and those of others who have added to this
discussion are well founded. Having spent almost 40 years with SEM and
watched them develop, there are areas that I believe are even more important
than the magnifications that we now achieve, they are the advances in
relation to accelerating voltage and signal collection!

I trust I will see Lou at the upcoming Missouri course, where two FEG in
lens detection systems will allow us to demonstrate that it is the ability
to collect high level signals at low kV, this really takes SEM forward.
Thus my answer to those buying a new SEM for other than "super light
microscope applications" is to go for a FEGSEM. This advice is not just for
"conventional" low kV abilities, little or no coating, but for the new ways
of collecting signals.

To be able to look at an uncoated biological sample in your applications,
using "in lens" backscatter, at say 1kV, is a revelation; at 100,000X if
that is your choice! Add to this the ability to play with the signals in a
FEGSEM. In these instruments you may obtain additional data through tuning
the mix of pure secondary signals and converted backscatter, or balancing
these signals to further reduce charge. All of these procedures become
standard tools that will enhance our levels of understanding of our
materials.

As a consultant I am often asked to make the clients "impossible" into
possible and I have no doubt that my tasks have been made far easier though
that magic combination of the field emission source and the through the lens
secondary and backscatter techniques. Plus one additional point, the FEG
provides a greater depth of field than the conventional tungsten hairpin or
LaB6 source!

Regards

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com

-----Original Message-----
X-from: RossLM-at-missouri.edu [mailto:RossLM-at-missouri.edu]
Sent: 04 March 2011 11:43
To: protrain-at-emcourses.com

Very nicely stated Yorgos. My experience in BioSEM is very limited, but I
too was wondering about the "bumps" in the Science cover image, whether it
could be metallic coating, an artifact or real.


On 3/4/11 2:53 AM, "eikonika-at-otenet.gr" {eikonika-at-otenet.gr} wrote:

}
}
}
}
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} Dear Jim
}
} I read with interest your recent posting on magnifications people use in
} your SEM lab, as well as the comments of other colleagues, and I would
like
} to add a few words:
} To your first question if magnification is determined more by the
instrument
} capabilities or the inherent properties of the specimens observed, I would
} say frankly: It's the specimens!
}
} I went through your site and saw your very decent micrographs that combine
a
} fine resolution with a nice depth of field. And saw that your Jeol
} instrument has a 3-4 nm resolution limit that is not so far from Tina's
} Hitachi with 1nm resolution. Do you think this can make a great difference
} in your work?
}
} We all know that to reach these low numbers we need to have a perfectly
} working source of electrons, a perfectly aligned scope, a perfectly
attached
} and coated specimen (like the ones for resolution assessment) and a
perfect
} focus and stigma etc. Obviously imperfections on these parameters will
stop
} us well before the ultimate resolution, and usually at around 10nm.
}
} Biology microscopists are like detectives, probably more than colleagues
} from other fields of microscopy. We start from a live organism where the
} cellular functions including plasma membrane morphology are changing every
} little fraction of a second. We have to kill this organism as soon as
} possible and fix it, then to take out the 70 or 80% of water and liquid
from
} around and inside it, and then coat it with metal (if we want to enjoy the
} clear high resolution images of coated specimens as opposed to native
state
} cells viewed in low vacuum instruments). Then we take images and we try to
} guess what the morphology can tell as in relation to the cell's function.
}
} To me sounds impossible that after all these torments the morphology of
the
} cell will stay intact at the level of 1 or 2nm that is really the size of
} big biomolecules. And I think that if I could go so small in cell
specimens
} I would feel really embarrassed: For I would have to describe structures
} appearing at this level that could be mostly artifacts. For instance the
} cover on Science magazine that Tina showed us is a microbe with its
surface
} having thousands of tiny grains at the size of a few nanometers. Do these
} grains represent any real structures or they are artifacts? And if the
} micrograph is only for decoration, that's fine. But f it is part of the
} research findings, it could be a trouble for the researcher to comment on
} it. Nevertheless here I have to admit that my SEM experience is limited to
} eukaryotic cells.
}
} It's amazing how we tend to get crazy with numbers and magnifications. It
} happened to me several times to take a high mag picture on a biological
} specimen (high for me is like 30K) only to find out afterwards that this
} picture was not any better from a 5K one. For obtaining a nice clear
} micrograph there are other parameters more important than the instrument's
} ultimate resolution. Apart from those already mentioned it is also the
} averaging and oversampling parameters -in other words. how much time the
} electron beam scans the specimen. And of course the depth of field is
} critical for the uneven surfaces found in biological samples. For me a
real
} improvement in biology SEM would be a substantial increase in the depth of
} field, so that more of the specimen can be in focus. However, I have to
} admit that my knowledge
}
} While writing these lines most of you guys from America are still
sleeping,
} so I hope this morning message will not spoil your mood. Have a nice day
} from the ever shiny Athens.
}
} yorgos
} Dr Yorgos Nikas
} Athens Innovative Microscopy
} Skra 36 Voula 16673 GREECE
}
} Tel/fax +30 210 8957677
} mobile +30 6945 107477
} eikonika-at-otenet.gr
} www.aim.cat
} ***********************************
}
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe --
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}
----------------------------------------------------------------------------
}
} Listers: Good Day, eh?
}
} While fighting our current 119 cm (3.9 feet) of snow (and counting) my
} mind began to wander and I became curious about the distribution of
} magnification in the images we've acquired with our (tungsten-based)
} SEM. Since we've logged all the images it wasn't hard to find out:
}
} http://www.mta.ca/dmf/sem_mag_dist.html
}
} We do SEM for a lot of different departments, but the bulk of our work
} is biological, with heavy emphasis on microorganisms, particularly
} diatoms. My questions to others out there who might have been in similar
} circumstances are:
}
} 1. Do you feel that this sort of distribution is determined more by the
} instrument capabilities, or the inherent properties of the specimens
} observed?
} 2. If we were go for a ~5-10X $$$$ investment in a field emission scope
} a) would this distribution of magnifications change significantly and b)
} would the upgrade be demonstrably worthwhile?
}
} I realize there is a big pile of ifs/ands/buts in these questions - I'm
} just looking for people who are willing to share thoughts, particularly
} if they have experience in taking this route.
}
} Thanks as always,
}
} Jim



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From: jehrman-at-mta.ca
Date: Fri, 4 Mar 2011 08:56:02 -0600
Subject: [Microscopy] Thanks: mag distribution of images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Listers,

First, thanks for all the informative replies. Their variety, though,
tells me this is what I get for asking imprecise questions! Let me
rephrase my curiosity on this subject with two more
observations/questions. Please take my numbers as assumed - I know there
is wiggle room in all the values I give, but that's not where my
questions are directed.

1. With a (vendor stated) resolution of 3.5 nm, and assuming the human
eye has a resolution of 0.1 mm (I wish I still did), the "useful"
magnification (or associated horizontal field width) of our W-based SEM
is around 30,000X. My bar chart shows that the mode of the magnification
used is 10,000X (mean is about 8,000X). So we appear to be
"underutilizing" the instrument by a factor of at least 3 quite a bit of
the time. So taking the same assumptions for a FE-based instrument with
1 nm resolution, useful magnification is 100,000X. If a similar bar
chart could be constructed for this instrument, would the mode/mean used
be in 30,000X region? Or would the distribution of mags be much more
seriously skewed toward higher magnification images?

2. Is the 5-10X increase in cost (and presumably maintenance) worth it,
considering that 30,000X images on the W-based instrument are certainly
possible (and passable)? Or will the magnification distribution be so
significantly skewed toward the higher mags that the W-based instrument
is left entirely in the dust?

I supposed my ulterior motive in asking these questions stems from the
fact that if we could actually secure the funding for a FE-SEM, we
almost certainly could not afford to keep them both. Are the current
plow-horse users going to be so enchanted with the new Lamborghini that
they'll be willing to support the instrument with more use and/or higher
fees? If they walk away, will new users step forward to take advantage
of the enhanced capability? No one can answer that for me in my
particular situation, but I'm interested in comments from others in
similar circumstances.

Thanks in advance,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

A much wittier reply came to mind
immediately after I clicked the 'Send' button.


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From: dsherman-at-purdue.edu
Date: Fri, 4 Mar 2011 09:18:04 -0600
Subject: [Microscopy] mag distribution of SEM images

Contents Retrieved from Microscopy Listserver Archives
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John,

Having HFW in the data bar on FEI SEMs is a choice you can make in
preferences. I keep magnification, micron bark and HFW in the data bar for
convenience. I do not know about TEMs.
--
Debby

} From: John Mansfield {jfmjfm-at-umich.edu}
} Date: Fri, 4 Mar 2011 09:27:20 -0500
} To: Debby Sherman {dsherman-at-purdue.edu}
} Cc: "message to: MSA list" {microscopy-at-microscopy.com}
} Subject: Re: [Microscopy] Re: mag distribution of SEM images
}
} Yes, it is just a simple software tweak. You could have the option of
} magnifications or HFW
} e.g.
} 200x 400x 800x etc.
} or something like 200µm, 100µm, 50µm, 25µm, etc.
} It's up to the manufacturers to implement it.
} Please guys!
}
} --
} John Mansfield PhD Cphys MInstP
} North Campus Electron Microbeam Analysis Laboratory
} 417 SRB, University of Michigan
} 2455 Hayward, Ann Arbor MI 48109-2143 USA
} Phone: (734) 936-3352 FAX (734) 763-2282
} Cell. Phone: (734) 834-3913
} (Leaving a phone message at 936-3352 is preferable to 834-3913)
} Email: jfmjfm-at-umich.edu
} URL: http://emalwww.engin.umich.edu/people/jfmjfm/jfmjfm.html
} Location: N 42 ° 17' 38.3" (42 ° 17.6391' ) W 83 ° 42' 38.6" (-83 °
} 42.6439')
} AIM: thejfmjfm
} Yahoo: thejfmjfm
} Skype: thejfmjfm
}
} Home address:
} 4304 Spring Lake Boulevard
} Ann Arbor MI 48108-9657
} Phone (734) 994-3096
} Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83 °
} 45.7980')
}
} Please note: Electronic Mail is not secure, but should be read several times
} every day, and should definitely be used for urgent or sensitive issues.
}
}
}
}
} On Mar 4, 2011, at 8:54 AM, Sherman, Debra M wrote:
}
} } I agree with the statement referring to magnification. I find it a useful
} } number to remember so that images are taken at an identical horizontal Field
} } Width but only for that purpose. I always include in all reports the
} } statement:
} } "Note that magnifications are accurate when images are displayed at 30x26cm
} } size. Micron bars are accurate at any display size."
} }
} } Too many times I have people coming to me saying: "I want images with a 1µm
} } bar." Now that is fine but that notation potentially represents a number of
} } different magnifications. Thus it is nice to know accurate HFW or
} } magnification from previous images so that future images can be captured at
} } similar conditions.
} }
} } Debby
} }
} } --
} } Debby Sherman, Director Phone: 765-494-6666
} } Life Science Microscopy Facility FAX: 765-494-5896
} } Purdue University E-mail: dsherman-at-purdue.edu
} } S-052 Whistler Building
} } 170 S. University Street
} } West Lafayette, IN 47907
} } http://www.ag.purdue.edu/facilities/microscopy/
} }
} }
} } } From: "jfmjfm-at-umich.edu" {jfmjfm-at-umich.edu}
} } } Reply-To: "jfmjfm-at-umich.edu" {jfmjfm-at-umich.edu}
} } } Date: Fri, 4 Mar 2011 07:25:34 -0500
} } } To: Debby Sherman {dsherman-at-purdue.edu}
} } } Subject: [Microscopy] Re: mag distribution of SEM images
} } }
} } }
} } }
} } }
} } } ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } } ----------------------------------------------------------------------------
} } }
} } } Also, an FESEM is MUCH easier to operate at high mag.
} } } You can wind most up to 50,000 times plus without even breaking a sweat!
} } }
} } } I would like to shift the discussion to displaying horizontal field width
} } } and
} } } changing mag by steps of horizontal field width.
} } } Magnification has been meaningless for many years!
} } }
} } }
} } } John Mansfield PhD Cphys MInstP
} } } North Campus Electron Microbeam Analysis Laboratory
} } } 417 SRB, University of Michigan
} } } 2455 Hayward, Ann Arbor MI 48109-2143 USA
} } } Phone: (734) 936-3352 FAX (734) 763-2282
} } } Cell. Phone: (734) 834-3913
} } } (Leaving a phone message at 936-3352 is preferable to 834-3913)
} } } Email: jfmjfm-at-umich.edu
} } } URL: http://emalwww.engin.umich.edu/people/jfmjfm/jfmjfm.html
} } } Location: N 42 ° 17' 38.3" (42 ° 17.6391' ) W 83 ° 42' 38.6" (-83 °
} } } 42.6439')
} } } AIM: thejfmjfm
} } } Yahoo: thejfmjfm
} } } Skype: thejfmjfm
} } }
} } } Home address:
} } } 4304 Spring Lake Boulevard
} } } Ann Arbor MI 48108-9657
} } } Phone (734) 994-3096
} } } Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83
} } } °
} } } 45.7980')
} } }
} } } Please note: Electronic Mail is not secure, but should be read several times
} } } every day, and should definitely be used for urgent or sensitive issues.
} } }
} } }
} } }
} } }
} } }
} } }
} } } ==============================Original Headers==============================
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From: dsherman-at-purdue.edu
Date: Fri, 4 Mar 2011 09:34:34 -0600
Subject: [Microscopy] Re: Thanks: mag distribution of images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jim,

Our use probably increased at least 10x within the first year of when we got
the first FESEM compared to the previous year using the older (but still
working to spec) W-SEM. It continues to maintain that higher usage 5 years
later. The ease of use and the possibilities opened up what had been
virtually entirely biological samples to the chemists, pharmacists, and
engineers while still satisfying the biologists. Some users disappear but
new ones take their place. The difference in a 20K image from the FESEM to
that of a W-instrument is startling even without the in-lens detector but
double so with the in-lens. Combinations of low kV and low vacuum options
on many modern instruments open up lots of new possibilities.

I totally understand your concern about higher cost-of-ownership. That has
indeed been a factor in our decisions. However, this has to be balanced
with new capabilities if the research is going to move forward. You must
make your administration aware of this and get their commitment to help out
initially if necessary. The year guarantee that manufacturers give on new
instruments is usually sufficient to build your user base. We started
charging immediately so that at the end of the first year we had the money
in the bank for the service contract. Thus we are not "in the red" at the
beginning of each fiscal year. We have timed our contracts so they are due
at the beginning of the fiscal year so can easily justify any carryover from
the previous year as it is already committed.

When looking for a new instruments (or contemplating this) always think
about the future not the present and the versatility that can be gained from
a particular instrument.

Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/


} From: "jehrman-at-mta.ca" {jehrman-at-mta.ca}
} Reply-To: "jehrman-at-mta.ca" {jehrman-at-mta.ca}
} Date: Fri, 4 Mar 2011 09:57:33 -0500
} To: Debby Sherman {dsherman-at-purdue.edu}
} Subject: [Microscopy] Thanks: mag distribution of images
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Listers,
}
} First, thanks for all the informative replies. Their variety, though,
} tells me this is what I get for asking imprecise questions! Let me
} rephrase my curiosity on this subject with two more
} observations/questions. Please take my numbers as assumed - I know there
} is wiggle room in all the values I give, but that's not where my
} questions are directed.
}
} 1. With a (vendor stated) resolution of 3.5 nm, and assuming the human
} eye has a resolution of 0.1 mm (I wish I still did), the "useful"
} magnification (or associated horizontal field width) of our W-based SEM
} is around 30,000X. My bar chart shows that the mode of the magnification
} used is 10,000X (mean is about 8,000X). So we appear to be
} "underutilizing" the instrument by a factor of at least 3 quite a bit of
} the time. So taking the same assumptions for a FE-based instrument with
} 1 nm resolution, useful magnification is 100,000X. If a similar bar
} chart could be constructed for this instrument, would the mode/mean used
} be in 30,000X region? Or would the distribution of mags be much more
} seriously skewed toward higher magnification images?
}
} 2. Is the 5-10X increase in cost (and presumably maintenance) worth it,
} considering that 30,000X images on the W-based instrument are certainly
} possible (and passable)? Or will the magnification distribution be so
} significantly skewed toward the higher mags that the W-based instrument
} is left entirely in the dust?
}
} I supposed my ulterior motive in asking these questions stems from the
} fact that if we could actually secure the funding for a FE-SEM, we
} almost certainly could not afford to keep them both. Are the current
} plow-horse users going to be so enchanted with the new Lamborghini that
} they'll be willing to support the instrument with more use and/or higher
} fees? If they walk away, will new users step forward to take advantage
} of the enhanced capability? No one can answer that for me in my
} particular situation, but I'm interested in comments from others in
} similar circumstances.
}
} Thanks in advance,
}
} Jim
}
} --
}
} James M. Ehrman
} Digital Microscopy Facility
} Mount Allison University
} 63B York St.
} Sackville, NB E4L 1G7
} CANADA
}
} phone: 506-364-2519
} fax: 506-364-2505
} email: jehrman-at-mta.ca
} www: http://www.mta.ca/dmf
}
} A much wittier reply came to mind
} immediately after I clicked the 'Send' button.
}
}
} ==============================Original Headers==============================
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From: jae5-at-lehigh.edu
Date: Fri, 4 Mar 2011 09:48:53 -0600
Subject: [Microscopy] Facility operation

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Facilities

The thread on facilities and their misuse by users has been longer than
most threads and has been full of wisdom: train all users; restrict
those who train; have users take formal courses (where available); give
check lists or have users make their own check sheets; the two-finger
rule; test users; and more. It seems to me that it would be well worth
while for someone to go through all the contributions and digest them
into a composite list: a check list for facility directors, if you will.
Of course there may be differences of opinion about what should be on
the list.

For example, despite the guidance from such a list, damage to the
instruments can and will happen. How much should the operation of the
facility be designed to create an environment in which the user who
causes damage feels free to report it, and how much should the
environment be such as to discourage damage in the first place?
Charging users for damage may discourage errors, but does not encourage
reporting them after the event.

However, when I wrote my original contribution I had something else in
mind. In speaking to facility directors over the years I have
recognized two distinct philosophies.

Philosophy 1.
The instruments belong to the facility. Users are guests. Operation of
the instruments should be limited to methods described by the
manufacturers manual, the recommendations of the maintenance engineer,
and the instructions of the facility manager.

Philosophy 2.
The instruments are a resource. During the time that they are using it,
the user should feel that they can treat the instrument as if it were
their own. Users should not be discouraged from trying to operate the
instrument in ways that have not previously been tried (though they
should be encouraged or required to talk to facility staff before doing
so).

I think that the first point of view is the majority view, but I have
always believed strongly in the second (even though it leads to a few
more occasions on which instruments get damaged). I believe that it
leads to users who develop a deeper understanding of the instruments
they use, and that it leads to better and more original research.

Alwyn

--
Alwyn Eades
Lehigh University


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From: dsherman-at-purdue.edu
Date: Fri, 4 Mar 2011 12:44:44 -0600
Subject: [Microscopy] EDX on Sulfur

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Listers,

We are trying to do quant on a multi-layer thin film on Molybdenum
substrate. In order to get the different layers we are varying the
accelerating voltage (7, 10, 20, & 25kV). EDX unit is an SDD with 80mm
window so counts are basically good at all kVs (1KC/S or greater). Spectra
were collected for up to 500sec.

Layers in order are:
Top: Indium oxide (~250nm)
middle: Zinc Oxide (~50nm)
middle 2: Cadium Sulfide (~30nm)
Bottom: Copper/Indium/Gallium/Sulfur/Selinium (~750nm)
Substrate: Mo (800 nm)

At 7kV, we get S and Se at rations of ~ 50:50. Expected was 20:80. This
ratio holds for 10 or 20kV as well. At 25kV Mo is detected.

The ratio is expected to be 20:80 in the CuInGaSSe layer based on the
lattice constants (determined by XRD) being slightly smaller than that of
the pure selenide phase. Using Vegard's Law, the S:Se ratio of 20:80 is
obtained. Previous EDX measurements using a SiLi detector, with the only
layer being the CuInGaSSe layer, also showed a S:Se ratio of roughly 20:80.

Any explanations for the ratio differences would be appreciated. Suggestions
for improving accuracy would be appreciated as would comments related to
dealing with EDX of Sulfur.

Debby

--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/



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From: tina-at-pbrc.hawaii.edu
Date: Fri, 4 Mar 2011 13:00:09 -0600
Subject: [Microscopy] Thanks: mag distribution of images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Our experience has been similar to Debby Sherman's; we have enough users
to support the instrument and we appeal to people in all kinds of fields
(although we do not have some of the enhanced capabiities Debby has, such
as cryo). I find training people on the FESEM a joy, and each user is
trained to use the instrument just about to its maximum capabilities, even
if they aren't going to go there. And most of them really get it.

Read Steve Chapman's post; it is the newer capabilities of these FESEMs
that really makes the difference. Yes, when we started seeing rough
surfaces on microbes that formerly looked smooth to us, we turned
ourselves inside out making sure this was not any kind of artifact. After
two ears with this instrument, we are *very* confident in what we are
seeing (yes, as far as you can be with chemical fixation, not ultrarapid
cryo). With low kV and high signal detection, we are seeing surface
structures that were formerly obscured by signals generated below the
surface. The difference is astounding. Also explainable and reproducible.
Trust me on this, or come and visit.

Magnification? When I train users, I do make the point that
"magnification" has become meaningless, but I still encourage them to
leave both the scale bar (which gives a false sense that you can actually
measure something) and the mag on the image data bar, because that at
least tells me something about the conditions under which that image was
taken (as well as accelerating voltage and working distance).

Aloha,
Tina

} Our use probably increased at least 10x within the first year of when we got
} the first FESEM compared to the previous year using the older (but still
} working to spec) W-SEM. It continues to maintain that higher usage 5 years
} later. The ease of use and the possibilities opened up what had been
} virtually entirely biological samples to the chemists, pharmacists, and
} engineers while still satisfying the biologists. Some users disappear but
} new ones take their place. The difference in a 20K image from the FESEM to
} that of a W-instrument is startling even without the in-lens detector but
} double so with the in-lens. Combinations of low kV and low vacuum options
} on many modern instruments open up lots of new possibilities.
}
} I totally understand your concern about higher cost-of-ownership. That has
} indeed been a factor in our decisions. However, this has to be balanced
} with new capabilities if the research is going to move forward. You must
} make your administration aware of this and get their commitment to help out
} initially if necessary. The year guarantee that manufacturers give on new
} instruments is usually sufficient to build your user base. We started
} charging immediately so that at the end of the first year we had the money
} in the bank for the service contract. Thus we are not "in the red" at the
} beginning of each fiscal year. We have timed our contracts so they are due
} at the beginning of the fiscal year so can easily justify any carryover from
} the previous year as it is already committed.
}
} When looking for a new instruments (or contemplating this) always think
} about the future not the present and the versatility that can be gained from
} a particular instrument.
}
} Debby

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: Jerzy.Gazda-at-ceriumlabs.com
Date: Fri, 4 Mar 2011 14:20:33 -0600
Subject: [Microscopy] EDX on Sulfur

Contents Retrieved from Microscopy Listserver Archives
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Debby,
Couple of things that you will have problems with using EDS on CIGS:
1) Se is volatile and moves under e-beam in the sample;
2) the additional issue is Mo-L alpa1 peak in substrate that directly overlaps with S-K in EDS; the Mo-K peaks are at 18-20KeV and need the higher acceleration voltage to be excited. But even at 7KV, you are generating Mo-Ls and your interaction volume is still well over 1um in diameter so there is plenty of Mo x-rays generated from the substrate and by fluorescence.

We find that TEM based EDS analysis is closer to what we measure in bulk concentration by chemical methods combined with mass spectroscopy and Neutron Activation Analysis. If you don't need to be using micro and nano-resolution, you would be better off using bulk techniques. The only technique that will give you accurate whole concentration of all elements in the bulk is NAA as chemical dissolution has issues with various phases in the complicated film stack.

Hope this helps,

Jerzy

***************************************************
Jerzy Gazda Ph.D.
Section Manager - TEM, FIB, SEM
Cerium Laboratories LLC
5204 E. Ben White Blvd. MS-512
Austin, TX 78741

(512) 934-5185 vm
(512) 622-6600 pgr

www.ceriumlabs.com



-----Original Message-----
X-from: dsherman-at-purdue.edu [mailto:dsherman-at-purdue.edu]
Sent: Friday, March 04, 2011 12:53 PM
To: Gazda, Jerzy

Listers,

We are trying to do quant on a multi-layer thin film on Molybdenum
substrate. In order to get the different layers we are varying the
accelerating voltage (7, 10, 20, & 25kV). EDX unit is an SDD with 80mm
window so counts are basically good at all kVs (1KC/S or greater). Spectra
were collected for up to 500sec.

Layers in order are:
Top: Indium oxide (~250nm)
middle: Zinc Oxide (~50nm)
middle 2: Cadium Sulfide (~30nm)
Bottom: Copper/Indium/Gallium/Sulfur/Selinium (~750nm)
Substrate: Mo (800 nm)

At 7kV, we get S and Se at rations of ~ 50:50. Expected was 20:80. This
ratio holds for 10 or 20kV as well. At 25kV Mo is detected.

The ratio is expected to be 20:80 in the CuInGaSSe layer based on the
lattice constants (determined by XRD) being slightly smaller than that of
the pure selenide phase. Using Vegard's Law, the S:Se ratio of 20:80 is
obtained. Previous EDX measurements using a SiLi detector, with the only
layer being the CuInGaSSe layer, also showed a S:Se ratio of roughly 20:80.

Any explanations for the ratio differences would be appreciated. Suggestions
for improving accuracy would be appreciated as would comments related to
dealing with EDX of Sulfur.

Debby

--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
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From: baskin-at-bio.umass.edu
Date: Fri, 4 Mar 2011 14:20:43 -0600
Subject: [Microscopy] Re: Thanks: mag distribution of images

Contents Retrieved from Microscopy Listserver Archives
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Jim,
As a modestly heavy user of Biological FESEM, in my opinion,
it is not about the magnification. Other features are more important.

1. Ease of use. Biological samples are really variable. It's not
finding one picture and then going away. I have to sample
extensively. With a modern FESEM, I might get 100 images in a few
hour session. The alignment, stigmation and so on are really stable
and simple to adjust, even when chaging kv or other operating
parameters.

2. Low mag - high mag. In biological samples, we often have a large
sample with dispersed small features of interest. We need good
*ultra* low mag for searching and high mag (not necessarily extreme
hi mag) for imaging, and easy switching between them. This occurs
with modern instruments.

3. Low voltage. I do my imaging at 1 to 3 kV. In that way, I am
looking at features at or near the surface, which is what I want to
see. With the typical 15 kV, the features I need to image would be
smeared out into the deep interaction volume. The low voltage regime
opens up huge possibilities. The magnifications might not change that
much but the sample diversity is likely to enlarge a lot.

Rather than the magnification parameter, I would look at productivity
(numbers of images per hour; or alternatively, numbers of samples per
hour) and sample diversity (different kinds of samples imaged). I
expect those numbers would indeed allow the FESEM to blow the old W
inst out of the water (at least for a typical university research
type of facility).

Hope this helps,
Tobias



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From: brachfelds-at-mail.montclair.edu
Date: Fri, 4 Mar 2011 15:26:12 -0600
Subject: [Microscopy] correction to mailing address: electron microscopy position

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

My apologies for the repeat post. I need to make a correction to the Box number in the mailing address for Electron Microscopy Specialist Position at Montclair State University.

Stefanie


Electron microscopy specialist position available, Montclair State University

We seek an electron microscopy specialist to support research and teaching efforts at Montclair State University. The specialist will instruct students, faculty, and visitors in the use of our Hitachi S2460N and S3400N Scanning Electron Microscopes, H7500 Transmission Electron Microscope, and supporting sample preparation equipment. The successful applicant will have expertise in the preparation, imaging, and compositional analysis of natural and synthetic materials, experience with maintenance and trouble-shooting of electron microscopes and their related equipment, and excellent communication and interpersonal skills with the ability to work in a multidisciplinary facility with a wide variety of beginning through advanced users.

Responsibilities of the position include:
- Training new users on our three electron microscopes and their supporting equipment
- Conducting basic preventative maintenance on the electron microscopes, diagnosing instrument malfunctions, and coordinating with repair personnel
- Overseeing chemical hygiene and chemical safety in the electron microscopy facility
- Working the facility directors on purchasing and billing
- Organizing and teaching workshops and short courses for internal and external users
- Participating in university outreach efforts
- Soliciting external consulting work and/or soliciting external research funding

A masters degree in a STEM discipline and at least 3 years of experience in the operation and maintenance of electron microscopes and their sample preparation equipment is required. Strong communication skills, significant experience in the preparation, imaging, and analysis of a wide array of sample types is required. Strong knowledge of computers, electronics, and troubleshooting is desirable. The successful candidate will be qualified to conduct consulting work and/or pursue external research funding. Experience with other major analytical equipment is a plus. The preferred start data is August 1, 2011.

A CV, statement of technical skills, research, laboratory management experience and relevant accomplishments, any supplementary materials (reprints, URLs, etc.) and the names and contact information for four references should be sent to brachfelds-at-mail.montclair.edu (email applications preferred). Hard copy applications should be sent to Dr. Stefanie Brachfeld, Department of Earth and Environmental Studies, Box V589, Montclair State University, Montclair, NJ 07043. Review of applications will be on March 28, 2011.

Please visit us at www.csam.montclair.edu


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From: donovan-at-uoregon.edu
Date: Fri, 4 Mar 2011 16:21:15 -0600
Subject: [Microscopy] Re: EDX on Sulfur

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Hi Debby,
I do this sort of thin film work all the time using EPMA here in
Oregon by running multiple voltage analyses and correcting for both
chemistry and geometry. In this case I would run 3 different electron
beam energies probably between 5 and 15 keV and use L lines for the
metals. With WDS the Mo-S overlap isn't bad and can be corrected
easily anyway. The EPMA is great for quantification, especially for
thin films because of its WDS sensitivity.

In my view EPMA is quite underutilized by materials people, but here
at UofO it is about 80% of my EPMA workload because of the strong
thin film research program.

I'd be happy to run it for you on our Sx50 or Sx100 at our usual
academic rates. Contact me off-line if you are interested or just
want to chat about the analysis.
john

At 10:49 AM 3/4/2011, dsherman-at-purdue.edu wrote:



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John J. Donovan donovan-at-uoregon.edu
University of Oregon (541) 346-4632 (office)
1443 E. 13th Ave (541) 346-4655 (lab)
Eugene, OR
97403-1241

Lab Web: http://epmalab.uoregon.edu
Facility Web: http://camcor.uoregon.edu
EPMA (SX100)Schedule: http://sweetwater.uoregon.edu/sx100
EPMA (SX50) Schedule: http://sweetwater.uoregon.edu/epma
SEM (Quanta) Schedule: http://sweetwater.uoregon.edu/sem
Remote Access: http://epmalab.uoregon.edu/howto.htm


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From: kraftpiano-at-gmail.com
Date: Mon, 7 Mar 2011 00:36:24 -0600
Subject: [Microscopy] Manual request

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Does anyone have a manual for a Varian 880RS gauge controller? I've scoured the 'Net, and Google has failed me. Ahh, Google, how could you have let me down so?

Thanks in advance, and may all of you who are "Out of the office" be having a good time. :)

--Justin A. Kraft

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From: cantonpa-at-unive.it
Date: Mon, 7 Mar 2011 06:02:11 -0600
Subject: [Microscopy] TEM english translation of F. Thon paper

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Is there anyone who has the english translation of this paper:
Z. Naturforschung (1966), 21a, 476-478 by F. Thon?
Thanks
Patrizia Canton


--
______________________________________________
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Dept. of Molecular Sciences and Nanosystems
Via Torino 155/b
I-30170
Venezia-Mestre Italy
Phone +39-041-2346790
Fax +39-041-2346747
e-mail cantonpa-at-unive.it
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From: baskin-at-bio.umass.edu
Date: Mon, 7 Mar 2011 06:56:18 -0600
Subject: [Microscopy] Re: TEM english translation of F. Thon paper

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Patrizia,
Years ago, I found a translation of a paper that I needed
from the "world translation index" (WTI). This is a compendium of
journal article translations from all over the world, indexed by
journal. I found this in the pre-on-line-everthing days, in the
reference section of my university library. I expect it is still
there. This is good old fashioned reference hunting -- the WTI was
published once a year, indexing the translations appearing over the
past year, and so I needed to pull down each vol starting after the
year my target came out, flip through the pages to find my source
journal, and then scan down through the various listings within that
journal to see if my volume and page numbers had a hit. Repeat with
the next volume. The hit in question provided information to a
translation held in a library (in Birmingham I think it was) the the
library was able to request for me. All delightfully old world, I
know.

I have no idea how or if this has survived or transformed
into a web presence today. I did just now look online briefly, and
found that UNESCO maintains something called "Index Translationum".
Apparently you can search this for papers after 1979 (not much help
for your quest) but they also mention that earlier papers are in the
printed version and they have some links about that. I am guessing
this is the same thing I looked at. But I just searched quickly.

Sorry if you know all about this -- it was certainly news to
me when I found it (and by the way the translation that I tracked
down from WTI turned out to be a good one).

As ever
Tobias


At 6:02 AM -0600 3/7/11, cantonpa-at-unive.it wrote:
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From: dcristofori-at-unive.it
Date: Mon, 7 Mar 2011 10:23:48 -0600
Subject: [Microscopy] SEM: venting procedure failed

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,
our Jeol JSM-5600LV has a problem with the vacuum system.
In particular, it doesn't vent the chamber. Maybe it's a problem of some
valves, but before dismantle and check them I'd prefer to vent the
system in a way safe for the EDS window.
Does anyone know a safe way to vent manually?
Thanks

Davide



~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

==============================Original Headers==============================
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From: Nicolas.Stephant-at-univ-nantes.fr
Date: Tue, 8 Mar 2011 04:10:23 -0600
Subject: [Microscopy] Re: SEM: venting procedure failed

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Davide

Is there any error message ?
Have you check securities of the microscope ? Some of them inhibit
vacuum system like water cooling.
Primary vacuum may be bad also (check oil level and quality of the
rotary pump and the Vbelt too).
There is check points on vacuum card to measure vacuum levels from
pirani gauges it could be interesting to test that. Sometime just a
small adjustment of potentiometer is enough.
Under column, there is a big valve with a switch on it axis . This
switch is also cause of security alert in vacuum sequence. Axis may be
slowed down by old grease.
In my opinion, venting the chamber is not urgent to check vacuum and not
safe for EDS window. I recommend to diagnose the problem before
open...otherwise your SEM may want to pump the chamber anyway.
If it's necessary, you can try to break vacuum from the top of the
column (gun side) to avoid a big "wind" in the chamber, but this must be
done very carefully and after swich off the SEM.
I hope this could be help for you.

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung


dcristofori-at-unive.it a écrit :
} ----------------------------------------------------------------------------
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} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Dear Listers,
} our Jeol JSM-5600LV has a problem with the vacuum system.
} In particular, it doesn't vent the chamber. Maybe it's a problem of some
} valves, but before dismantle and check them I'd prefer to vent the
} system in a way safe for the EDS window.
} Does anyone know a safe way to vent manually?
} Thanks
}
} Davide
}
}
}
} ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
} Davide Cristofori
}
} direct phone = 041.234.67.26
} e-mail = dcristofori[at]unive[dot]it
}
} Universita' Ca' Foscari Venezia
} Dipartimento di Sc. Molecolari e Nanosistemi
} Lab. di Scienza e Tecnologia dei Materiali
} Via Torino, 155b
} I-30172 Mestre (VE)
} Italy
} ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
}
} ==============================Original Headers==============================
} 7, 18 -- From dcristofori-at-unive.it Mon Mar 7 10:23:47 2011
} 7, 18 -- Received: from algol.unive.it (algol.unive.it [157.138.1.8])
} 7, 18 -- by ns.microscopy.com (8.12.11.20060308/8.12.8) with ESMTP id p27GNlNc018343
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==============================Original Headers==============================
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From: david.wilbur-at-tufts.edu
Date: Tue, 8 Mar 2011 07:19:54 -0600
Subject: [Microscopy] Re: SEM: venting procedure failed

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

On my old JEOL 840, This happens when the compressed nitrogen tank that
provides the gas to vent the system runs out. Since a cylinder lasts
for years, it is easy to forget about.

Dave

On 3/7/2011 11:26 AM, dcristofori-at-unive.it wrote:
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Dear Listers,
} our Jeol JSM-5600LV has a problem with the vacuum system.
} In particular, it doesn't vent the chamber. Maybe it's a problem of some
} valves, but before dismantle and check them I'd prefer to vent the
} system in a way safe for the EDS window.
} Does anyone know a safe way to vent manually?
} Thanks
}
} Davide
}
}
}
} ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
} Davide Cristofori
}
} direct phone = 041.234.67.26
} e-mail = dcristofori[at]unive[dot]it
}
} Universita' Ca' Foscari Venezia
} Dipartimento di Sc. Molecolari e Nanosistemi
} Lab. di Scienza e Tecnologia dei Materiali
} Via Torino, 155b
} I-30172 Mestre (VE)
} Italy
} ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
}
} ==============================Original Headers==============================
} 7, 18 -- From dcristofori-at-unive.it Mon Mar 7 10:23:47 2011
} 7, 18 -- Received: from algol.unive.it (algol.unive.it [157.138.1.8])
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} 7, 18 -- Date: Mon, 07 Mar 2011 17:24:42 +0100
} 7, 18 -- From: Davide Cristofori {dcristofori-at-unive.it}
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--
__________________________________
David J. Wilbur, Ph.D.
Instrumentation Specialist
Department of Chemistry
Tufts University
62 Talbot Ave.
Medford, MA 02155
voice: 617-627-2163
Fax: 617-627-3443
email: david.wilbur-at-tufts.edu
__________________________________


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From: mmashore-at-vapop.ucsd.edu
Date: Tue, 8 Mar 2011 15:46:12 -0600
Subject: [Microscopy] Protocol for TEM of Cultured Cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello all,

I am looking for a working protocol preparing cells for standard
morphological TEM. So far I have read many different ways of doing this but
have never actually prepared cells for TEM. I was hoping to find out peoples
preferences, whether they fix cells in a monolayer, or a suspension, or just
fix the pellet. I was also wondering if people like to pre-embed in agar,
and what cell concentrations are preferred to start with. Any help would be
great.

Thanks,

Michael






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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 8 Mar 2011 20:29:34 -0600
Subject: [Microscopy] viaWWW:yeast like cryoprotectant in HPF

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Email: csuarez000-at-gmail.com Name: Cristina

Title-Subject: [Filtered] yeast like cryoprotectant in HPF

Message: Dear colleagues,

I am working with virus infected mamamaliam cells using HPF and
cryosubstitution. I have same problems with the preservation and
cryoprotectants. Some people told me that I can use yeast like
cryoprotectant. I have no experience in this feld. Have some of you
worked with this method, and can help me?
Thanks so much

C.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 8 Mar 2011 20:30:31 -0600
Subject: [Microscopy] viaWWW:TEM Specialist Needed

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Email: andrea.greene-at-wdc.com Name: Andrea Greene

Organization: Western Digital

Title-Subject: [Filtered] TEM Specialist Needed

Message: Successful candidate will utilize their TEM expertise to
perform advanced and routine evaluation of disk drive media products for
R &D, and defect failure analysis evaluation, reporting the findings in
a clearly documented form. They will interact with magnetic research
engineers to understand and supply necessary structural information.
They will be responsible for equipment uptime, including interfacing
with equipment vendor, routine calibration and maintenance of the TEM
lab and supplies. As a Sr Engineer, they will be the lead in
developing/refining advanced TEM/STEM/EDX/EELS techniques and training
Jr members of the Materials Analysis group.

Please apply through http://www.westerndigital.apply2jobs.com
job MMO4428

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 8 Mar 2011 20:31:06 -0600
Subject: [Microscopy] viaWWW:Confocal Microscopy Workshop

Contents Retrieved from Microscopy Listserver Archives
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Email: bob.price-at-uscmed.sc.edu Name: Bob Price

Organization: University of South Carolina

Title-Subject: [Filtered] Confocal Microscopy Workshop

Message: The University of South Carolina School of Medicine
Instrumentation Resource Facility will be hosting the 7th Annual
Workshop on Basic Confocal Microscopy from June 13th through the 17th.
The workshop is directed towards beginning and intermediate users of
confocal microscopes and involves a series of lectures (specimen
preparation, labeling strategies, proper set-up of instrument operating
parameters, proper handling of 2D and 3D confocal images in programs
such as Adobe Photoshop and AMIRA), hands on specimen preparation, and
time on a number of different point scanning and spinning disk confocal
microscopes.
Companies scheduled to have instruments and applications experts on-site
include Leica, Nikon, Olympus, Perkin Elmer, Zeiss and Intelligent
Imaging Innovations (3i).
Faculty will include Dr. Jay Jerome of Vanderbilt University, Dr. Ralph
Albrecht of the University of Wisconsin Madison, Dr. John Mackenzie of
North Carolina State University, Dr. Tom Trusk of the Medical University
of Wisconsin, and Dr. Bob Price of the University of South Carolina.
For further information or to register please see:
http://dba.med.sc.edu/price/irf/irf.htm or contact Anna McNeal
(anna.mcneal-at-uscmed.sc.edu) or Bob Price (bob.price-at-uscmed.sc.edu).

Bob Price
Research Professor
USC School of Medicine
6439 Garner's Ferry Road
Columbia, SC 29209
803-216-3824 (T)
803-216-3825 (Admin Asst)
Bob.Price-at-uscmed.sc.edu


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From: jbpawley-at-wisc.edu
Date: Tue, 8 Mar 2011 20:51:55 -0600
Subject: [Microscopy] Second Notice: Sixteenth International UBC 3D Live-Cell Course next

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello all,

We had almost stopped celebrating the Superbowl success of the mighty
Packers from tiny Green Bay, Wisconsin, when (what we hope is) the
first stroke against the final stage of the rightwing takeover of the
US began right here in Madison. (Put "Madison" into the search bar at
www.guardian.co.uk or try http://www.defendwisconsin.org/ Please
excuse off topic comment.)

In all the excitement (and shovelling the snow!), I almost forgot to
get out the second announcement about the 16th UBC Live-Cell Course.

http://3dcourse.ubc.ca/2011/students.php?page=overview

There is usually a bit of a rush as the March 15 deadline approaches,
so if you are thinking about applying, now would be a good time (and
if you have already taken the Course, please tell your friends!). Go
to:

http://3dcourse.ubc.ca/2011/public.php?page=apply

Even if you are still working out the finances, it might still be
good to "get in line" by filling out an application.

Next June, in addition to the faculty listed on the brochure, we
finally arranged for Kevin Eliceri (of LOCI fame:
http://www.loci.wisc.edu/people/kevin-eliceiri) to come and talk
about image database management and other matters. With Rachel Wong
(http://wonglab.biostr.washington.edu/), this makes at least 2 new
faces this year, and there may still be more coming.

We don't yet know all the equipment that will be there but I have
just heard that Leica expects to bring a TIRF and an SP5x confocal
system this year, Zeiss will probably send an LSM-5-Live, and we
expect a Nikon TIRF system and an AI confocal. Yokogawa/Quorum
itself will bring their new CV1000, an all-in-one, bench-top confocal
imaging system for long-term, multi-point, 3D, time-lapse imaging.
We also expect Olympus to send a TIRF and an FV10 Integrated Confocal
System ("confocal in a box") and their new spectral scanner with
FRAP-uncaging kit. Quorum will bring the Yokogawa CV1000.

This is not close to a complete list, just those we have heard
details about. We also expect systems from from Applied Precision,
McBain Instruments/Visitech, Bit-Plane, PerkinElmer, and perhaps
TILL. As they come in, they will be described at

http://www.3dcourse.ubc.ca/2011/public.php?page=companies,

Overall, we expect to have access to at least thirteen 3D systems.

Remember, these systems are not just there for demos. Students will
use then for 14, 2-hour lab sessions over 5 days working with an
advisor in one of 8 small groups.

Many folks have found it a great way to really try out all the new
equipment in one convenient location before committing to a purchase.

Hope to see you there!

Jim P.
--
***************************************************************************
Prof. James B. Pawley, Ph.
608-238-3953
21. N. Prospect Ave. Madison, WI 53726 USA
JBPAWLEY-at-WISC.EDU
3D Microscopy of Living Cells Course, June 11-23, 2011, UBC, Vancouver Canada
Info: http://www.3dcourse.ubc.ca/ Applications due by March 15, 2011
"If it ain't diffraction, it must be statistics." Anon.

To sign up, click on: http://www.3dcourse.ubc.ca/2011/public.php?page=apply

==============================Original Headers==============================
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17, 28 -- June
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 9 Mar 2011 08:19:55 -0600
Subject: [Microscopy] viaWWW:Electroscan 2020

Contents Retrieved from Microscopy Listserver Archives
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Email: sc-at-nanoct.com.ar Name: Silvio Cechet

Organization: NanoCT

Title-Subject: [Filtered] Electroscan 2020

Message: Hi
We found an old Electroscan 2020 but it doesn't have the computer and
the program. Can anyone tell me where can I found it?

Thanks in advance
Silvio Cechet

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From: DusevichV-at-umkc.edu
Date: Wed, 9 Mar 2011 09:33:51 -0600
Subject: [Microscopy] RE: Second Notice: Sixteenth International UBC 3D

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I really hate to see shameless political propaganda on the list.
Disgusting.

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} -----Original Message-----
} From: jbpawley-at-wisc.edu [mailto:jbpawley-at-wisc.edu]
} Sent: Tuesday, March 08, 2011 8:52 PM
} To: Dusevich, Vladimir
} Subject: [Microscopy] Second Notice: Sixteenth International UBC 3D
} Live-Cell Course next
}
}
}
}
} -----------------------------------------------------------------------
} -----
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
} To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} -----------------------------------------------------------------------
} -----
}
} Hello all,
}
} We had almost stopped celebrating the Superbowl success of the mighty
} Packers from tiny Green Bay, Wisconsin, when (what we hope is) the
} first stroke against the final stage of the rightwing takeover of the
} US began right here in Madison. (Put "Madison" into the search bar at
} www.guardian.co.uk or try http://www.defendwisconsin.org/ Please
} excuse off topic comment.)
}
} In all the excitement (and shovelling the snow!), I almost forgot to
} get out the second announcement about the 16th UBC Live-Cell Course.
}
} http://3dcourse.ubc.ca/2011/students.php?page=overview
}
} There is usually a bit of a rush as the March 15 deadline approaches,
} so if you are thinking about applying, now would be a good time (and
} if you have already taken the Course, please tell your friends!). Go
} to:
}
} http://3dcourse.ubc.ca/2011/public.php?page=apply
}
} Even if you are still working out the finances, it might still be
} good to "get in line" by filling out an application.
}
} Next June, in addition to the faculty listed on the brochure, we
} finally arranged for Kevin Eliceri (of LOCI fame:
} http://www.loci.wisc.edu/people/kevin-eliceiri) to come and talk
} about image database management and other matters. With Rachel Wong
} (http://wonglab.biostr.washington.edu/), this makes at least 2 new
} faces this year, and there may still be more coming.
}
} We don't yet know all the equipment that will be there but I have
} just heard that Leica expects to bring a TIRF and an SP5x confocal
} system this year, Zeiss will probably send an LSM-5-Live, and we
} expect a Nikon TIRF system and an AI confocal. Yokogawa/Quorum
} itself will bring their new CV1000, an all-in-one, bench-top confocal
} imaging system for long-term, multi-point, 3D, time-lapse imaging.
} We also expect Olympus to send a TIRF and an FV10 Integrated Confocal
} System ("confocal in a box") and their new spectral scanner with
} FRAP-uncaging kit. Quorum will bring the Yokogawa CV1000.
}
} This is not close to a complete list, just those we have heard
} details about. We also expect systems from from Applied Precision,
} McBain Instruments/Visitech, Bit-Plane, PerkinElmer, and perhaps
} TILL. As they come in, they will be described at
}
} http://www.3dcourse.ubc.ca/2011/public.php?page=companies,
}
} Overall, we expect to have access to at least thirteen 3D systems.
}
} Remember, these systems are not just there for demos. Students will
} use then for 14, 2-hour lab sessions over 5 days working with an
} advisor in one of 8 small groups.
}
} Many folks have found it a great way to really try out all the new
} equipment in one convenient location before committing to a purchase.
}
} Hope to see you there!
}
} Jim P.
} --
} ***********************************************************************
} ****
} Prof. James B. Pawley, Ph.
} 608-238-3953
} 21. N. Prospect Ave. Madison, WI 53726 USA
} JBPAWLEY-at-WISC.EDU
} 3D Microscopy of Living Cells Course, June 11-23, 2011, UBC, Vancouver
} Canada
} Info: http://www.3dcourse.ubc.ca/ Applications due by March 15,
} 2011
} "If it ain't diffraction, it must be statistics." Anon.
}
} To sign up, click on:
} http://www.3dcourse.ubc.ca/2011/public.php?page=apply
}
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} Cell Course next
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From: watson-at-wi.mit.edu
Date: Wed, 9 Mar 2011 11:00:10 -0600
Subject: [Microscopy] Second Notice: Sixteenth International UBC 3D

Contents Retrieved from Microscopy Listserver Archives
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I agree 100%. Please leave the politics at home.
Nicki Watson
Whitehead Institute
W.M.Keck biological imaging facility

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From: dcristofori-at-unive.it
Date: Wed, 9 Mar 2011 11:33:21 -0600
Subject: [Microscopy] SEM: venting procedure failed - problem identified

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,
I found the problem was that the piston of a mechanical valve is slowed
down, which prevented to complete the venting sequence. I helped the
piston movement by pushing it gently, and the sequence could be
completed. Now I hope it's enough to clean the valve, though the
dismantling won't be that easy.
I'd like to thank everybody gave suggestions. I greatly appreciate your
help.

Davide

==============================Original Headers==============================
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From: delannoy-at-jhmi.edu
Date: Wed, 9 Mar 2011 12:54:28 -0600
Subject: [Microscopy] HPF

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Email: csuarez000-at-gmail.com Name: Cristina

Title-Subject: [Filtered] yeast like cryoprotectant in HPF

Message: Dear colleagues,

I am working with virus infected mamamaliam cells using HPF and
cryosubstitution. I have same problems with the preservation and
cryoprotectants. Some people told me that I can use yeast like
cryoprotectant. I have no experience in this feld. Have some of you
worked with this method, and can help me?
Thanks so much

C.

C,
I believe thats yeast paste or its supernatant as a cryoprotectant.
You can also use hexadecene,0.2M sucrose, 0.3 M Mannitol,
20-25% dextran or 20% BSA, endless choices. I do believe a 2-3%
amount of water in your FS cocktail (1% osmium 0.2% UA
in 95% acetone 5% methanol) is better.
Have you checked out Mary Morphew's manual from Boulder Co.?

http://bio3d.colorado.edu/docs/mmanual.pdf

very useful, good luck.

Mike Delannoy
JHMI Microscope Facility
Baltimore Md


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10, 29 -- From: Michael J Delannoy {delannoy-at-jhmi.edu}
10, 29 -- To: "microscopy-at-microscopy.com" {microscopy-at-microscopy.com}
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From: protrain-at-emcourses.com
Date: Wed, 9 Mar 2011 13:15:33 -0600
Subject: [Microscopy] SEM: venting procedure failed - problem identified

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

I do not know the type of valve that you are discussing but may I offer some
general advice on trying to fix it?

1. Switch off the microscope at the wall.
2. Work with the idea that someone had to build it therefore there must
be a way of taking it apart.
3. Have someone with you so that you can dictate what you did to take
the unit apart, it will help when reversing the process.
4. Expect a spring under tension to be inside the unit so take great
care when finally opening it.
5. A standard reason for such an item to jam is the "O" ring has dried
out and it is sticking to the degraded grease within the chamber.
6. Give the chamber and the plunger a good clean and use a good quality
vacuum grease on the "0" ring.

Good luck

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com

-----Original Message-----
X-from: dcristofori-at-unive.it [mailto:dcristofori-at-unive.it]
Sent: 09 March 2011 17:34
To: protrain-at-emcourses.com

Dear Listers,
I found the problem was that the piston of a mechanical valve is slowed
down, which prevented to complete the venting sequence. I helped the
piston movement by pushing it gently, and the sequence could be
completed. Now I hope it's enough to clean the valve, though the
dismantling won't be that easy.
I'd like to thank everybody gave suggestions. I greatly appreciate your
help.

Davide

==============================Original Headers==============================
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==============================Original Headers==============================
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From: paul_hazelton-at-umanitoba.ca
Date: Wed, 9 Mar 2011 17:45:11 -0600
Subject: [Microscopy] Re: Second Notice: Sixteenth International UBC 3D

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Maybe I'm just slowing down in my old age, but I thought what Jim Pawley
said was a pretty blatant spoof, or shot at the political system as
designed by columnists, not a statement of politics. Rather than get
bent out of shape, we should see it as it is and get a bit of a chuckle.
Unless, of course, you were cheering for the Steelers. But since
neither the Vikes nor Steelers play real (read Canadian) football - who
really cares?

Paul


--
Paul R. Hazelton, PhD
Viral Gastroenteritis Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
745 Bannatyne Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
paulhazelton-at-mts.net
Phone: 204-789-3313 (w);
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: hyi-at-emory.edu
Date: Wed, 9 Mar 2011 18:17:11 -0600
Subject: [Microscopy] CPD vs HMDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All:

I seem to remember this topic being discussed before. I hope you all not to mind that I am bringing it up again.

Can I get opinions from experts out there on the comparison between CPD and HMDS drying for various types of SEM samples? If there are artifact associated with each of this drying method, what do they look like? Since attachments are not allowed on this site, please feel free to email me if you have any images to share. Thank you very much in advance for your help.

Hong

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From: jmircheski-at-us.es
Date: Thu, 10 Mar 2011 03:44:58 -0600
Subject: [Microscopy] Protocol for TEM of Cultured Cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Michael,

I am working at the moment with cells for standard EM. I have monolayer of
cells (these attach to glass goverslip) and a suspension of cells (which do
not attach to glass coverslip). I prepare them through a standard protocol
(glut/PFA, OsO4, uranyl acetate, dehydration, resin infiltration, resin
polymerisation). If I work with the monolayers, I do everything (up to the
resin) in a culture dish or a petri. For the suspension, I first pellet them
and then process in the same way as the others. Just trying to be extremely
careful not to disturb the pellet. In both cases, I try to exchange the
solutions very carefully and slowly. Both cell types are from mouse.
I too would like to hear/read what other people have to say on this. It
would be nice to hear other versions of the protocol and try to compare the
results. So, if there is anyone that has successfully implemented some
modifications in the protocol, please do share your experience. Michael, how
is the pre-embedding in Agar done and for type of cells?

Regards,

Josif

(It's so nice to see that so many people on vacation at the moment! I guess
that my mailbox will be pleased to receive them all.)

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS)
Hosp.Univ. Virgen del Rocío/CSIC/Univ. de Sevilla y
Dpto. Fisiologia Médica y Biofísica
Universidad de Sevilla
Facultad de Medicina
Avda. Sánchez-Pizjuán 4
41009-Sevilla
 
Phone:+34-954556103
Fax:+34-954551769
e-mail: jmircheski-at-us.es

-----Original Message-----
X-from: mmashore-at-vapop.ucsd.edu [mailto:mmashore-at-vapop.ucsd.edu]
Sent: Tuesday, March 08, 2011 10:56 PM
To: jmircheski-at-us.es

Hello all,

I am looking for a working protocol preparing cells for standard
morphological TEM. So far I have read many different ways of doing this but
have never actually prepared cells for TEM. I was hoping to find out peoples
preferences, whether they fix cells in a monolayer, or a suspension, or just
fix the pellet. I was also wondering if people like to pre-embed in agar,
and what cell concentrations are preferred to start with. Any help would be
great.

Thanks,

Michael






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From: dsherman-at-purdue.edu
Date: Thu, 10 Mar 2011 12:50:20 -0600
Subject: [Microscopy] Protocol for TEM of Cultured Cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Josif and Michael,

Cultured cells can be challenging depending on whether the initial
orientation is important and also because they tend to have relatively low
contrast. A few suggestions are:

1) For preservation of original orientation: grow attached cells in plastic
petri dishes. Do all fix, dehydrate, infiltrate right in the dish. Use
ETOH to dehydrate but do not use propylene oxide. Just do your infiltration
using ETOH for the graded steps and then embed in a very thin layer of
resin.
Cut the end off of gelatin capsules so they are a tube. Then just place
them onto the polymerized cell/resin sheet, add 1 drop of resin, and again
polymerize to secure them onto the cell/resin sheet. Then you can fill up
the capsules and add the labels and polymerize for the third time.
Alternatively, place the capsules on the resin sheet while it is still tacky
so that the capsules will seal into the resin. Then fill with additional
resin the next day and polymerize again. Break the sheet out of the petri
dish and then cut out or break out the individual blocks with cells. Using
liquid nitrogen will help release the cell sheet from the plastic petri
dish.
We prefer using petri dishes to the multi-well culture plates as they are
easier to break.

2) If orientation is not important: Do fixation as desired. Scrape cells off
of the culture dish, pellet, and enrobe in 1% agarose (see 4 below).
Proceed with dehydration and infiltration of resulting blocks of cells and
embed as normal.

3) Using reduced osmium really helps increase contrast in cultured cells.
Reduced osmium: 1% OsO4 + 1.5% K3Fe(CN)6 [mix equal volumes of: 2% OsO4 in
H2O + 3% K3Fe(CN)6]

4) It is best to limit centrifuging of cells in suspension as this can cause
damage. We see this in bacteria when cells will have clear areas if fixed
immediately after centrifugation. We avoid this by concentrating the cells
using very gentle centrifugation or even letting them settle if this is an
option. Then remove most of the media and resuspend cells. Let them sit for
10-15min to recover from the original centrifugation. Note that this may be
a problem with some mammalian cells if they are not kept at the correct
temperature and oxygen levels. In that case do not hold them but immediately
proceed with fixation.
Add fixative in 1:1 ratio to the concentrated cells and let them fix at
appropriate temperature (usually 4oC for mammalian cells) for 5-10min. This
will fix the cells nicely and there are no problems with fix not penetrating
the pellet evenly. The you can spin, resuspend in fresh fix, and proceed. If
the cells pellet well after initial fixation and pellet is small enough than
you may not have to do any further spinning. If they do not stay together
well or if pellet is large and you eventually want to embed it in multiple
blocks then proceed as follows. Enrobe the cells with 1% low temperature
gelling agarose (Sigma Type VII works well) after fixation to facilitate
dehydration and embedding and remove need for further centrifugation.
Dehydrate, infiltrate, and embed resulting blocks.

5) Cultured cells do really well with microwave-assisted fixation. If you
have access to a scientific microwave designed for this purpose than by all
means use it. It does a great job in both speeding up the process,
minimizing extraction of soluble material from the cells, and just gives
good overall preservation.

Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/


} From: "jmircheski-at-us.es" {jmircheski-at-us.es}
} Reply-To: "jmircheski-at-us.es" {jmircheski-at-us.es}
} Date: Thu, 10 Mar 2011 04:47:07 -0500
} To: Debby Sherman {dsherman-at-purdue.edu}
} Subject: [Microscopy] RE: Protocol for TEM of Cultured Cells
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Michael,
}
} I am working at the moment with cells for standard EM. I have monolayer of
} cells (these attach to glass goverslip) and a suspension of cells (which do
} not attach to glass coverslip). I prepare them through a standard protocol
} (glut/PFA, OsO4, uranyl acetate, dehydration, resin infiltration, resin
} polymerisation). If I work with the monolayers, I do everything (up to the
} resin) in a culture dish or a petri. For the suspension, I first pellet them
} and then process in the same way as the others. Just trying to be extremely
} careful not to disturb the pellet. In both cases, I try to exchange the
} solutions very carefully and slowly. Both cell types are from mouse.
} I too would like to hear/read what other people have to say on this. It
} would be nice to hear other versions of the protocol and try to compare the
} results. So, if there is anyone that has successfully implemented some
} modifications in the protocol, please do share your experience. Michael, how
} is the pre-embedding in Agar done and for type of cells?
}
} Regards,
}
} Josif
}
} (It's so nice to see that so many people on vacation at the moment! I guess
} that my mailbox will be pleased to receive them all.)
}
} Dr. Josif Mircheski
} ____________________________________________________________________________
} ___
} Instituto de Biomedicina de Sevilla (IBIS)
} Hosp.Univ. Virgen del Rocío/CSIC/Univ. de Sevilla y
} Dpto. Fisiologia Médica y Biofísica
} Universidad de Sevilla
} Facultad de Medicina
} Avda. Sánchez-Pizjuán 4
} 41009-Sevilla
}  
} Phone:+34-954556103
} Fax:+34-954551769
} e-mail: jmircheski-at-us.es
}
} -----Original Message-----
} X-from: mmashore-at-vapop.ucsd.edu [mailto:mmashore-at-vapop.ucsd.edu]
} Sent: Tuesday, March 08, 2011 10:56 PM
} To: jmircheski-at-us.es
} Subject: [Microscopy] Protocol for TEM of Cultured Cells
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hello all,
}
} I am looking for a working protocol preparing cells for standard
} morphological TEM. So far I have read many different ways of doing this but
} have never actually prepared cells for TEM. I was hoping to find out peoples
} preferences, whether they fix cells in a monolayer, or a suspension, or just
} fix the pellet. I was also wondering if people like to pre-embed in agar,
} and what cell concentrations are preferred to start with. Any help would be
} great.
}
} Thanks,
}
} Michael
}
}
}
}
}
}
} ==============================Original Headers==============================
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Subject: [Microscopy] viaWWW: Research Technician Position Opening

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From: xyang-at-SMU.CA
Date: Fri, 11 Mar 2011 07:00:03 -0600
Subject: [Microscopy] how to diagnose e-beam disappearing problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

While I was working on the SEM, the HV was tripped at the beginning.  When I
turned the HV and filament current back on, the program I used indicated the
HV and the filament were working properly.  However, I could not see the
beam anymore.

I am not sure if the HV tripping would actually cause any damage to the
system.  Any inputs on how to bring the beam back will be greatly
appreciated.

Regards,

Sean
EMC -at- SMU





==============================Original Headers==============================
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9, 21 -- Date: Fri, 11 Mar 2011 09:00:02 -0400
9, 21 -- From: Xiang Yang {xyang-at-SMU.CA}
9, 21 -- Subject: how to diagnose e-beam disappearing problem
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From: protrain-at-emcourses.com
Date: Fri, 11 Mar 2011 08:53:05 -0600
Subject: [Microscopy] how to diagnose e-beam disappearing problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Sean,

I think you're talking about a Zeiss sem with SmartSEM (or even LEO32) software, right?

If that is the case, the software is somewhat buggy and can get screwed up, especially when something like a HV trip happens. It could be as easy as the screen image is frozen (right click on your image display, choose 'commands' and 'normal' and that often unfreezes things). Sometimes it's more stuck than that and we sometimes need to reboot the PC. Occasionally it's even more stuck than that and rebooting the SEM does the trick (going to shutdown.. first to Yellow and then to Red, then bringing it all back up).

Chris Pawlowicz, B.Eng
Manager, Lab Development
UBM TechInsights
3000 Solandt Rd Ottawa ON Canada K2K 2X2
T: +1 613 576 0150
F: +1 613 599 6501
E: cpawlowicz-at-ubmtechinsights.com


-----Original Message-----
X-from: xyang-at-SMU.CA [mailto:xyang-at-SMU.CA]
Sent: Friday, March 11, 2011 8:10 AM

Hi

First of all take a look at the scan system control to see if the beam has
been blanked or frozen?

Then as you are using a computer driven instrument the next act that you
must always carry out is to close down completely and reboot the system.
You know what happens on your desk top PC if a program boots up wrong or
crashes, well exactly the same happens with a PC driven microscope. Do not
be satisfied with doing this once as I know a number of systems that need
two or three reboots to get back to normality!


Does the system have a gun airlock which has closed and remained closed? It
is no good taking it back to air and looking in the gun chamber because most
systems with a gun airlock close it when air is admitted to any part of the
system.

After that you may need the assistance of a service technician?

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: xyang-at-SMU.CA [mailto:xyang-at-SMU.CA]
Sent: 11 March 2011 13:01
To: protrain-at-emcourses.com

Hello everyone,

While I was working on the SEM, the HV was tripped at the beginning.  When I
turned the HV and filament current back on, the program I used indicated the
HV and the filament were working properly.  However, I could not see the
beam anymore.

I am not sure if the HV tripping would actually cause any damage to the
system.  Any inputs on how to bring the beam back will be greatly
appreciated.

Regards,

Sean
EMC -at- SMU





==============================Original Headers==============================
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9, 21 -- Date: Fri, 11 Mar 2011 09:00:02 -0400
9, 21 -- From: Xiang Yang {xyang-at-SMU.CA}
9, 21 -- Subject: how to diagnose e-beam disappearing problem
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From: mmashore-at-vapop.ucsd.edu
Date: Fri, 11 Mar 2011 11:55:28 -0600
Subject: [Microscopy] RE: Protocol for TEM of Cultured Cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I would like to thank everybody for sharing so much information with me.
Everyone really helped me out. It was great to read everyone's process.

Thanks,

Michael




==============================Original Headers==============================
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From: xyang-at-SMU.CA
Date: Fri, 11 Mar 2011 12:06:07 -0600
Subject: [Microscopy] how to diagnose e-beam disappearing problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thank you everyone for the inputs.

Indeed it is a Leo 1450VP SEM. The computer and the SEM system has been
reboot many times and the EDS system has also been turned off to eliminate
any possibilities.

We have also double checked that the HV and filament were just fine.

Does it look like a lens problem or a gun tilt/shift problem?

Sean

-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: Friday, March 11, 2011 10:56 AM
To: xyang-at-SMU.CA

Hi

First of all take a look at the scan system control to see if the beam has
been blanked or frozen?

Then as you are using a computer driven instrument the next act that you
must always carry out is to close down completely and reboot the system.
You know what happens on your desk top PC if a program boots up wrong or
crashes, well exactly the same happens with a PC driven microscope. Do not
be satisfied with doing this once as I know a number of systems that need
two or three reboots to get back to normality!


Does the system have a gun airlock which has closed and remained closed? It
is no good taking it back to air and looking in the gun chamber because most
systems with a gun airlock close it when air is admitted to any part of the
system.

After that you may need the assistance of a service technician?

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: xyang-at-SMU.CA [mailto:xyang-at-SMU.CA]
Sent: 11 March 2011 13:01
To: protrain-at-emcourses.com

Hello everyone,

While I was working on the SEM, the HV was tripped at the beginning.  When I
turned the HV and filament current back on, the program I used indicated the
HV and the filament were working properly.  However, I could not see the
beam anymore.

I am not sure if the HV tripping would actually cause any damage to the
system.  Any inputs on how to bring the beam back will be greatly
appreciated.

Regards,

Sean
EMC -at- SMU





==============================Original Headers==============================
9, 21 -- From xyang-at-SMU.CA Fri Mar 11 07:00:03 2011
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9, 21 -- Date: Fri, 11 Mar 2011 09:00:02 -0400
9, 21 -- From: Xiang Yang {xyang-at-SMU.CA}
9, 21 -- Subject: how to diagnose e-beam disappearing problem
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From: heckman-at-bgsu.edu
Date: Fri, 11 Mar 2011 16:51:11 -0600
Subject: [Microscopy] FW: troubleshooting Zeiss EM 10

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Hi, microscopists,
We are trying to figure out what is wrong with our Zeiss TEM. The vacuum reads 5 x 10-3 milliBar and goes no further down on the gauge on
the console.

We have checked the seals on the gun chamber and camera chamber and they seem to be o.k.
We checked the forepumps by disconnecting the vacuum lines from the column, and both are pulling over 30 lbs/sqin.
Diffusion pump heater is going on, and the cooling water is cooling the outside.
The Penning gauge was cleaned and that didn't change the reading.
We think the main valve is opening because the gauge on the console only reads the column vacuum.
We are running out of ideas. Perhaps there is something obvious that is preventing the column from pumping down.
Ideas, anyone?
Carol Heckman
Bowling Green State University

==============================Original Headers==============================
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2, 30 -- Date: Fri, 11 Mar 2011 17:51:10 -0500
2, 30 -- Subject: FW: troubleshooting Zeiss EM 10
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From: stefan.diller-at-t-online.de
Date: Fri, 11 Mar 2011 17:13:20 -0600
Subject: [Microscopy] Re: FW: troubleshooting Zeiss EM 10

Contents Retrieved from Microscopy Listserver Archives
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Carol,
I once had a leaky aperture changer, but only leaking in one of the three possible positions. Found it only by chance... ;-)
Did you check if the pressure gets down when you are changing positions on one of the three aperture changers?
Other possible points of interest:
- all movable parts (plate camera, viewing screen, specimen movements...)
- what happens when you set the plate camera to atmospheric pressure?
Fastest solution for a fix: get a leak tester

Best wishes,
Stefan

-------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D-97072 Wuerzburg Germany
Tel. +49-931-7848700
Fax +49-931-7848701
Mobile +49-175-7177051

Email: diller-at-stefan-diller.com
Websites: www.stefan-diller.com
www.elektronenmikroskopie.info
www. assisi.de
--------------------------------------------

Am 11.03.2011 um 23:57 schrieb heckman-at-bgsu.edu:

}
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} Hi, microscopists,
} We are trying to figure out what is wrong with our Zeiss TEM. The vacuum reads 5 x 10-3 milliBar and goes no further down on the gauge on
} the console.
}
} We have checked the seals on the gun chamber and camera chamber and they seem to be o.k.
} We checked the forepumps by disconnecting the vacuum lines from the column, and both are pulling over 30 lbs/sqin.
} Diffusion pump heater is going on, and the cooling water is cooling the outside.
} The Penning gauge was cleaned and that didn't change the reading.
} We think the main valve is opening because the gauge on the console only reads the column vacuum.
} We are running out of ideas. Perhaps there is something obvious that is preventing the column from pumping down.
} Ideas, anyone?
} Carol Heckman
} Bowling Green State University
}
} ==============================Original Headers==============================
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} 2, 30 -- To: "MicroscopyListserver (E-mail)" {Microscopy-at-microscopy.com}
} 2, 30 -- Date: Fri, 11 Mar 2011 17:51:10 -0500
} 2, 30 -- Subject: FW: troubleshooting Zeiss EM 10
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 12 Mar 2011 08:37:22 -0600
Subject: [Microscopy] viaWWW:BSL2 research

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Email: jwoperei-at-email.smith.edu Name: Judith Wopereis

Organization: Smith College

Title-Subject: [Filtered] BSL2 research

Message: Hi all,

I am wondering how microscope equipment housed in a non- BSL2 facility
is being cleaned after being used for BSL2 research. Both our Leica SP5
confocal microscope w/incubation chamber and OlympusBX51 light
microscope are being used for this project. Any information about what
disinfectant to use, what parts to clean and how this is done is
welcome. Maybe you have a microscope cleaning protocol in place and want
to share that with me.

Any information about this is welcome.
Best,
Judith Wopereis.

Smith College,
Center for Microscopy and Imaging.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 12 Mar 2011 08:38:27 -0600
Subject: [Microscopy] viaWWW:GLP Certification of EM facility

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Email: Angel.Paredes-at-fda.hhs.gov Name: Angel Paredes

Organization: FDA/NCTR

Title-Subject: [Filtered] GLP Certification of EM facility

Message: Hi,

I was asked if it were possible to GLP certify our EM operations. Is
there anyone out there that has GLP certified their EM facility or that
works in a GLP certified facility that could help me?


Thank you,
Angel Paredes
Director EM services
NCTR
Jefferson, Arkansas


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From: svmcphie-at-utmb.edu
Date: Mon, 14 Mar 2011 00:07:08 -0500
Subject: [Microscopy] Postdoctoral Position in Cryo-EM and structure determination

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A postdoctoral position in Cryo-EM and structure analysis is available at the University of Texas Medical Branch at Galveston to study the structure and active conformation of membrane-associated protein and complexes involved in blood coagulation: http://www.utmb.edu/ncb/faculty/Stoilova-McPhieSvetla.asp.
Highly motivated candidates with expertise in macromolecular structure analysis, modeling and biophysics are encouraged to apply. Additional experience with Linux computing systems will be an advantage.
The Sealy Center for Structural Biology and Molecular Biophysics at UTMB, as well as the PI’s lab are fully equipped for state of the art structure determination of macromolecular complexes: http://www.scsb.utmb.edu/. UTMB is part of the Gulf Coast Consortium: http://cohesion.rice.edu/centersandinst/gcc/ and the Texas Medical Center, which houses the NIH funded National center for Macromolecular Imaging: http://ncmi.bcm.edu/ncmi/.
Interested candidates should send a CV including areas of expertise and interest, publications list, and names and contact information for three references to svmcphie-at-utmb.edu.

Svetla Stoilova-McPhie, PhD
Assistant Professor,
Department of Neuroscience and Cell Biology
Scientist, Sealy Centre for Structural Biology
and Molecular Biophysics
University of Texas Medical Branch at Galveston
301 University Boulevard, Galveston, Texas 77555-0620
Lab: (+1) 409-747-2159
Cell: (+1) 979-319-1348
Fax: (1+) 409-747-2200
Email: svmcphie-at-utmb.edu
http://www.utmb.edu/ncb/faculty/Stoilova-McPhieSvetla.asp



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From: Frank_Karl-at-lincolnelectric.com
Date: Mon, 14 Mar 2011 05:56:28 -0500
Subject: [Microscopy] cross polar images with your cell phone

Contents Retrieved from Microscopy Listserver Archives
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I'm sure most of you have seen the articles and images, but still, not bad
images for a cell phone. Maybe cell was the right adjective for these
radio phones...

http://www.wired.com/wiredscience/2011/03/diy-cellphone-microscope/

stay safe......
Frank Karl

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From: dsherman-at-purdue.edu
Date: Mon, 14 Mar 2011 19:55:27 -0500
Subject: [Microscopy] Microtome salt crystals

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

We have been asked to microtome salt crystals. The crystals will be on the
order of 120nm and sections need to be under 5µm. I assume that we will
have to embed the crystals and then try to make ~2µm sections using glass
knives. I am concerned that the crystals might damage diamond knives.

I thought to use Spurrs resin but do not know if we will actually get
infiltration sufficient to keep the crystals from falling out. Sections
will have to be cut dry since water would dissolve the crystal.

Any suggestions as to type of embedding resin would be appreciated or
experience in microtoming similar samples.

Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy




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9, 28 -- To: "message to: MSA list" {microscopy-at-microscopy.com}
9, 28 -- Date: Mon, 14 Mar 2011 20:55:24 -0400
9, 28 -- Subject: Microtome salt crystals
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From: colijn.1-at-osu.edu
Date: Mon, 14 Mar 2011 20:21:52 -0500
Subject: [Microscopy] Re: Microtome salt crystals

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Debby,

Is there a typo in your message? I assume you mean the crystals are
~120um and you want 2um thick particles. A 2um thick crystal is too
thick for EM, so I assume this is for LM.

Why do you need to microtome? Could you possibly crush the salt
crystals and dust the dry powder on a thin carbon or lacy film? A
mortar and pestle should break up most stuff into the size range you
want. You may be able to get even finer by crushing/grinding between
between glass microscope slides.

I would be surprised if rock salt damaged a diamond knife. It isn't
very hard.

Cheers,
Henk


At 3/14/2011 8:56 PM, dsherman-at-purdue.edu wrote:
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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}
} Hi all,
}
} We have been asked to microtome salt crystals. The crystals will be on the
} order of 120nm and sections need to be under 5µm. I assume that we will
} have to embed the crystals and then try to make ~2µm sections using glass
} knives. I am concerned that the crystals might damage diamond knives.
}
} I thought to use Spurrs resin but do not know if we will actually get
} infiltration sufficient to keep the crystals from falling out. Sections
} will have to be cut dry since water would dissolve the crystal.
}
} Any suggestions as to type of embedding resin would be appreciated or
} experience in microtoming similar samples.
}
} Debby
}
} ---
} Debby Sherman, Director Phone: 765-494-6666
} Life Science Microscopy Facility FAX: 765-494-5896
} Purdue University E-mail:dsherman-at-purdue.edu
} S-052 Whistler Building
} 170 S. University Street
} West Lafayette, IN 47907
} http://www.ag.purdue.edu/facilities/microscopy
}
}
}
}
} ==============================Original Headers==============================
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} 9, 28 -- To: "message to: MSA list" {microscopy-at-microscopy.com}
} 9, 28 -- Date: Mon, 14 Mar 2011 20:55:24 -0400
} 9, 28 -- Subject: Microtome salt crystals
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--
Hendrik O. Colijn www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

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From: dsherman-at-purdue.edu
Date: Mon, 14 Mar 2011 20:33:03 -0500
Subject: [Microscopy] Re: Microtome salt crystals

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

No the original was correct. These are microcrystals. This is for a
chemistry lab that works on methods to determine crystallinity in proteins
and other materials. They are doing this using second harmonic generation
(SHG) properties in microcrystals. I do not know the details but the hope is
that SHG microscopy can be used to speed up crystal detection in protein
crystal structure determination.

Crushing the crystals would damage the symmetry they hope to retain.

Debby


On 3/14/11 9:15 PM, "Hendrik Colijn" {colijn.1-at-OSU.edu} wrote:

} Hi Debby,
}
} Is there a typo in your message? I assume you mean the crystals are ~120um
} and you want 2um thick particles. A 2um thick crystal is too thick for EM, so
} I assume this is for LM.
}
} Why do you need to microtome? Could you possibly crush the salt crystals and
} dust the dry powder on a thin carbon or lacy film? A mortar and pestle should
} break up most stuff into the size range you want. You may be able to get even
} finer by crushing/grinding between between glass microscope slides.
}
} I would be surprised if rock salt damaged a diamond knife. It isn't very
} hard.
}
} Cheers,
} Henk



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From: nizets2-at-yahoo.com
Date: Tue, 15 Mar 2011 05:38:30 -0500
Subject: [Microscopy] viaWWW:BSL2 research

Contents Retrieved from Microscopy Listserver Archives
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Hi Judith,

Actually your question is strange because BSL2 research should be performed in a
BSL2 facility!!
I don't think that a standard procedure would be the best.
The procedure certainly depends on the kind of BSL2 you are facing.
Are these bacteria, viruses, human cells, parasites?

Best regards,

Stephane

 


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Email: jwoperei-at-email.smith.edu Name: Judith Wopereis

Organization: Smith College

Title-Subject: [Filtered] BSL2 research

Message: Hi all,

I am wondering how microscope equipment housed in a non- BSL2 facility
is being cleaned after being used for BSL2 research.  Both our Leica SP5
confocal microscope w/incubation chamber and OlympusBX51 light
microscope are being used for this project. Any information about what
disinfectant to use, what parts to clean and how this is done is
welcome. Maybe you have a microscope cleaning protocol in place and want
to share that with me.

Any information about this is welcome.
Best,
    Judith Wopereis.

Smith College,
Center for Microscopy and Imaging.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 16 Mar 2011 09:05:03 -0500
Subject: [Microscopy] viaWWW:EM technician/staff scientist opening

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Any cleaning protocol should be part if the risk assessment done before starting work and it has to be tailored to the specific organism you're looking at.
If you're not in a level two area though the specimen should almost certainly be in some way deactivated before looking at it. We routinely hand class 2 and worse organisms but they're dead before we start on them - usually crosslinking with glutaraldehyde is sufficient. If you have to look at them live then a sealed slide should be the way to go making decontamination unnecessary.

Most things that could be used to decontaminate are not going to do delicate optics much good - our usual reagents are sodium hypochlorite,2m sodium hydroxide ( for very tough things ) and formalin vapour ( which requires a room that can be fumigated ), I wouldn't like to use anything other than 70% ethanol on a 'scope.
Cheers
Ian

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Email: bwilson-at-salud.unm.edu Name: Bridget Wilson

Organization: University of New Mexico

Title-Subject: [Filtered] EM technician/staff scientist opening

Message: A full-time position is available for an electron microscopy
technician/staff scientist to join a busy, multi-faculty laboratory
group at the University of New Mexico in scenic New Mexico. Funding
for the group comes from multiple institutes at the NIH, as well as NSF
and the Human Frontiers Science Program. This interdisciplinary group
integrates electron and fluorescence imaging with biochemistry and with
mathematical modeling to obtain a more complete understanding of the
spatiotemporal events that initiate signaling across cell membranes.
The group has developed novel “rip-flip” technologies to study the
topography of receptors and associated signaling molecules on the
landscape of the plasma membrane. The applicant will be trained in this
innovative technique. The applicant will also be trained in image
analysis procedures developed within the laboratory group and develop
new nanoparticle probes. Fluorescence microscopy techniques will also
be applied, to screen antibodies and perform correlative studies related
to the EM projects. We will consider both entry-level and
experienced applicants.
The successful applicant will already be familiar with conventional
electron microscopy techniques, including embedding, thin-sectioning,
staining and TEM imaging. Additional familiarity with the basics of
mammalian cell culture and fluorescence microscopy techniques
(immunofluorescence, confocal imaging) would be helpful. Good computer
skills and good record keeping, trouble shooting, self-motivation and
interpersonal skills are important criteria. This is a great
opportunity to live in the beautiful Southwest!
Contact
Bridget S. Wilson, PhD
Send CV, statement of interest and references to: bwilson-at-salud.unm.edu



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 16 Mar 2011 13:59:21 -0500
Subject: [Microscopy] viaWWW:Job Opening: Nanoscale Characterization and Fabrication Lab

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Email: reynolds-at-vt.edu Name: Bill Reynolds

Organization: Virginia Tech

Title-Subject: [Filtered] Job Opening: Nanoscale Characterization and
Fabrication Lab / Virginia Tech

Message: The Nanoscale Characterization and Fabrication Laboratory at
Virginia Tech announces an opening for a focussed-ion beam specialist.
The open position is for a Research Associate or Senior Research
Associate, "Nanoscale Instrumentation Specialist", and the required
qualifications include: working knowledge of analytical instrumentation,
scanning electron microscopy, and focused ion-beam operating principles;
experience operating and maintaining these and/or related instruments; a
willingness to help out where needed with other equipment. Experience
with nanoindentation, scanned probe microscopy, TEM, SIMS, XPS, or Auger
is a plus. Experience with instrument troubleshooting and maintenance is
desirable. The successful candidate will be in charge of an FEI Helios
Nanolab 600 Focused Ion Beam (FIB). Depending upon qualifications, the
candidate can be appointed as a research faculty. Information about the
facility is available at: http://www.ictas.vt.edu/facilities/ncfl
Applications will be accepted on-line at:
http://www.hr.vt.edu/employment/
Interested candidates should apply to Posting Number 0110095.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 16 Mar 2011 18:44:50 -0500
Subject: [Microscopy] viaWWW:protocols for TEM of cultured cells

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Email: j.janssen-at-nki.nl Name: Hans Janssen

Organization: Netherlands Cancer Institute

Title-Subject: [Filtered] protocols for TEM of cultured cells

Message: Josif and Michael,
I like to add 3 extra possibilities to the mail of Debbie. There are
commercially available plastic cover slips called Thermanox (in
different shapes and sizes). You can grow your cells on it and use the
standard embedding procedures. Also available are small petri dishes
with a foil as bottom, in here you grow your cells follow the standard
procedure iup to 100% ethanol then cut out a piece of foil and continu
the embedding with it. A drawback is that while sectioning the sections
will split on the plastic layer, so your cells will be at the edge of
the sections. The sections can have a wavy appearence.
The third is an oldfashion method. Coat a glass cover slip with a
relatively thick layer of carbon, grow your cells on the carbon, follow
the standard embedding procedure but use for the epon a flat mold that
exactly fits the glass cover slip. This to prevent epon from coming to
the bottom side. After polymerisation you can peel of the glass, it will
split on the carbon layer. Then re-embed to get epon on the carbon side.
I have no commercial interest in the mentioned products.
Good luck, Hans janssen.


Josif and Michael,

Cultured cells can be challenging depending on whether the initial
orientation is important and also because they tend to have relatively low
contrast. A few suggestions are:

1) For preservation of original orientation: grow attached cells in plastic
petri dishes. Do all fix, dehydrate, infiltrate right in the dish. Use
ETOH to dehydrate but do not use propylene oxide. Just do your infiltration
using ETOH for the graded steps and then embed in a very thin layer of
resin. Cut the end off of gelatin capsules so they are a tube. Then
just place
them onto the polymerized cell/resin sheet, add 1 drop of resin, and again
polymerize to secure them onto the cell/resin sheet. Then you can fill up
the capsules and add the labels and polymerize for the third time.
Alternatively, place the capsules on the resin sheet while it is still tacky
so that the capsules will seal into the resin. Then fill with additional
resin the next day and polymerize again. Break the sheet out of the petri
dish and then cut out or break out the individual blocks with cells. Using
liquid nitrogen will help release the cell sheet from the plastic petri
dish.
We prefer using petri dishes to the multi-well culture plates as they are
easier to break.

2) If orientation is not important: Do fixation as desired. Scrape cells off
of the culture dish, pellet, and enrobe in 1% agarose (see 4 below).
Proceed with dehydration and infiltration of resulting blocks of cells and
embed as normal.

3) Using reduced osmium really helps increase contrast in cultured cells.
Reduced osmium: 1% OsO4 + 1.5% K3Fe(CN)6 [mix equal volumes of: 2% OsO4 in
H2O + 3% K3Fe(CN)6]
4) It is best to limit centrifuging of cells in suspension as this
can cause
damage. We see this in bacteria when cells will have clear areas if fixed
immediately after centrifugation. We avoid this by concentrating the cells
using very gentle centrifugation or even letting them settle if this is an
option. Then remove most of the media and resuspend cells. Let them sit for
10-15min to recover from the original centrifugation. Note that this may be
a problem with some mammalian cells if they are not kept at the correct
temperature and oxygen levels. In that case do not hold them but immediately
proceed with fixation.
Add fixative in 1:1 ratio to the concentrated cells and let them fix at
appropriate temperature (usually 4oC for mammalian cells) for 5-10min. This
will fix the cells nicely and there are no problems with fix not penetrating
the pellet evenly. The you can spin, resuspend in fresh fix, and proceed. If
the cells pellet well after initial fixation and pellet is small enough than
you may not have to do any further spinning. If they do not stay together
well or if pellet is large and you eventually want to embed it in multiple
blocks then proceed as follows. Enrobe the cells with 1% low temperature
gelling agarose (Sigma Type VII works well) after fixation to facilitate
dehydration and embedding and remove need for further centrifugation.
Dehydrate, infiltrate, and embed resulting blocks.

5) Cultured cells do really well with microwave-assisted fixation. If you
have access to a scientific microwave designed for this purpose than by all
means use it. It does a great job in both speeding up the process,
minimizing extraction of soluble material from the cells, and just gives
good overall preservation.

Debby

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 16 Mar 2011 18:45:41 -0500
Subject: [Microscopy] viaWWW:SEM - Table Top SEM versus Research Grade SEM

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Email: james.m.hoffmann-at-usa.dupont.com Name: Jim Hoffmann

Organization: E.I. Dupont

Title-Subject: [Filtered] SEM - Table Top SEM versus Research Grade SEM

Message: Hello Listserver Folks,

I am seeking your advice and experience. I am an Optical Microscopist
working at a manufacturing site in a busy microscopy lab. The type of
samples that I see cover a wide range including: failure analysis,
customer support, small particle identification, R&D support,
manufacturing issues, materials analysis, defect identification, root
cause troubleshooting, Quality Control, polymers, organics, inorganics,
etc... Besides Optical microscopy I also use Micro FTIR spectroscopy. I
would like to add an SEM to my lab primarily so that I can get EDS
elemental information to complement the FTIR information. The increased
magnification and depth of field beyond optical microscopy would be an
added bonus but not the critical need. I usually don't need over 1000x,
but occasionally I need to go to 10,000 - 20,000x. For this I send
samples out for SEM.
I was wondering if any of you folks have insights or experience with
desk-top SEM's such as EVEX Mini-SEM, Aspex Express/Explorer, or Hitachi
TM3000 ? Since I am not a trained SEM microscopist, I am thinking that
the table-top models would be just right for me ... easier to operate
with less training ... easier maintenance ... no sputter coating
required ... What would I be giving up in terms of EDS capability and
Imaging capability? Also, since I am at a manufacturing facility, funds
are tight in my lab. I am thinking I may need to go with a "previously
owned" instrument... I am not sure how much I have to spend at this
point ....

Thank

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From: cpawlowicz-at-ubmtechinsights.com
Date: Thu, 17 Mar 2011 08:18:02 -0500
Subject: [Microscopy] RE: viaWWW:SEM - Table Top SEM versus Research Grade

Contents Retrieved from Microscopy Listserver Archives
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James,

We have a busy lab with a number of microscopes (optical, SEM, TEM etc). While most of our SEMs are full size systems (Zeiss, JEOL), some with EDS, we also have a tabletop Hitachi TM1000 SEM. I also recently had a TM3000 with EDS in as a demo unit to try out and compare. (it's handy to have a small fast SEM right in the lab area).

Most of our work is semiconductor based.

First off, we are impressed with the TM1000 (and even more impressed with the TM3000) in how quickly and easily it can be used to get great images (albeit limited in mag). It definitely has limited controls (compared to a full size system) but you can learn how to use it in about 30 seconds. It is much harder for people to screw it up also! The EDS was quick and intuitive to learn how to use and had fast mapping capabilities. EDS capability was similar to what we have on our full size SEM (by no means 'dumbed down').

Pros:
Fast, easy to use (for trained and non-trained people alike).
Excellent quality images.
Various 'high pressure' modes meaning you often don't need to coat.
No special services required (water, special power, air -plug it in to standard outlet!) and small size (really is table-top).
Easy to exchange filaments

Cons:
Limited magnification
BSE detector only (no SE)
Limited beam voltages (have choice of a few fixed steps)
Small stage

Pricing was a bit hard to pin down.. base SEM was ~$80k, add another ~$75k for EDS. Other options like motorized stage are available. We were looking at the demo unit (year end sale) and price was about 25% discount.

I have seen TM1000s on the used market for ~$10k or less with no EDS.

Definitely 'try before you buy' - and one thing I'm still not sure about is the stated 'magnification'.
We have our SEMS mostly set to use Polaroid output as the reference for mag but I'm not sure what Hitachi uses. To get the same image, 10,000x on the Hitachi = 3,000x on our Zeiss and JEOL.. confusing!

Finally, our TM1000 has been very reliable except for the turbo.. it only lasted a year or so before making bad noises. Hitachi replaced it no problems but I don't know if this is a problem area or not. The TM3000 uses a new turbo.

Chris Pawlowicz, B.Eng
Manager, Lab Development
UBM TechInsights
3000 Solandt Rd Ottawa ON Canada K2K 2X2
T: +1 613 576 0150
F: +1 613 599 6501
E: cpawlowicz-at-ubmtechinsights.com



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Email: james.m.hoffmann-at-usa.dupont.com Name: Jim Hoffmann

Organization: E.I. Dupont

Title-Subject: [Filtered] SEM - Table Top SEM versus Research Grade SEM

Message: Hello Listserver Folks,

I am seeking your advice and experience. I am an Optical Microscopist working at a manufacturing site in a busy microscopy lab. The type of samples that I see cover a wide range including: failure analysis, customer support, small particle identification, R&D support, manufacturing issues, materials analysis, defect identification, root cause troubleshooting, Quality Control, polymers, organics, inorganics, etc... Besides Optical microscopy I also use Micro FTIR spectroscopy. I would like to add an SEM to my lab primarily so that I can get EDS elemental information to complement the FTIR information. The increased magnification and depth of field beyond optical microscopy would be an added bonus but not the critical need. I usually don't need over 1000x, but occasionally I need to go to 10,000 - 20,000x. For this I send samples out for SEM.
I was wondering if any of you folks have insights or experience with desk-top SEM's such as EVEX Mini-SEM, Aspex Express/Explorer, or Hitachi TM3000 ? Since I am not a trained SEM microscopist, I am thinking that the table-top models would be just right for me ... easier to operate with less training ... easier maintenance ... no sputter coating
required ... What would I be giving up in terms of EDS capability and
Imaging capability? Also, since I am at a manufacturing facility, funds are tight in my lab. I am thinking I may need to go with a "previously owned" instrument... I am not sure how much I have to spend at this point ....

Thank

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From: fahayes-at-ucdavis.edu
Date: Thu, 17 Mar 2011 13:05:03 -0500
Subject: [Microscopy] need an owners manual for LKB NOVA

Contents Retrieved from Microscopy Listserver Archives
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Does anyone out there have an extra owners manual they can send to me for an
LKB NOVA ultramicrotme?

Fred Hayes
Manager
Interdisciplinary Center for Electron Microscopy (ICEM) / Kemper Hall
Facility, room 0108
Det of Chemical Engineering and Material Sciences
3118 Bainer Hall
Univ of CA Davis
Davis CA 95616
530-752-0284 office




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From: sckuehn-at-concord.edu
Date: Thu, 17 Mar 2011 13:39:21 -0500
Subject: [Microscopy] Standards for a new electron microprobe lab in WV

Contents Retrieved from Microscopy Listserver Archives
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Dear colleagues, (appologies to anyone also on the sx-50 or MSA list)

I am currently developing a collection of standards for a new electron
microprobe lab at Concord University in West Virginia, USA. I have
gratefully received samples from the Smithsonian and Harvard along with
several USGS, MPI-DING, and NIST glasses. I also have several more
samples generously provided by a number of people. An array of purchased
minerals, metals, and simple compounds should arrive during the coming
weeks. Even still, there remain some gaps.

For example, I am looking for synthetic Ni and Co-olivines. I am aware
of some grown in Japan decades ago, but I have been unable to locate a
current source.

Silicates with significant amounts of Sr, Rb, or V also have proven
difficult to find.

I am also aware of some synthetic Cl-apatite grown in France (Argiolas
and Baumer, Can. Min., v. 16, pp 285-290, 1978) but have been unable to
track down any material.

Suggestions of other useful materials or offers of the same also would
be much appreciated.

In exchange for any samples that may be provided, I can offer one,
although somewhat indirectly. I have been characterizing a homogeneous
rhyolitic obsidian from the collections of the Harvard Mineralogical
Museum - sample ID3506 from Lipari Is., Italy. Major/minor elements are
well-characterized by several methods including a 25-lab EPMA
intercomparison (manuscript in review). Some trace/REE data are
available as well (XRF, ICP-AES, ICP-MS, LA-ICP-MS). Harvard has the
material for distribution. I can provide compositional data on request.

The Concord University probe lab itself is a bit unusual in several
respects. It's the only probe that we're aware of in West Virginia (if
anyone knows of another, please let me know). It is also located at a
2800-student, mainly undergraduate state university. Although the lab is
new, it is largely based on older equipment. We have a refurbished
ARL-SEMQ that was previously located at the University of Kentucky. We
have modern software in the form of Probe for EPMA, and we recently
obtained funding to upgrade to a new SDD EDS system. The key focus for
the lab will be undergraduate teaching and research, but time will be
available for outside commercial and academic users. We also plan to
develop the capability for remote operation of the key analytical
functions. Next week, we will have a poster at the Southeastern Section
meeting of the Geological Society of America. If you are at the meeting,
stop by and say hello.

Thanks and best regards,

- Steve Kuehn

--

----------------
Dr. Stephen C. Kuehn
Research Scientist and Lecturer
Manager, Electron Microprobe Facility
Division of Natural Sciences
Science, room 106

Concord University, Campus Box F20
1000 Vermillion St
PO Box 1000
Athens, WV 24712-1000

http://academics.concord.edu/sckuehn/
http://academics.concord.edu/microanalysis/
sckuehn-at-concord.edu kuehnsc-at-gmail.com
304-384-6322

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 17 Mar 2011 14:04:50 -0500
Subject: [Microscopy] viaWWW:Automated EM Immunogold Labeling

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Email: hwitkiewicz-at-prism-sd.org Name: Halina Witkiewicz

Organization: PRISM

Title-Subject: [Filtered] Automated EM Immunogold Labeling

Message: Hello everybody,

I wonder if any of you have any experience with or opinion about the
Leica EM IGL, sold by Marine Reef International
http://www.marinereef.com/emigl.php.

Thank you,

Halina Witkiewicz, PhD
www.PRISM-SD.org

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 17 Mar 2011 14:05:14 -0500
Subject: [Microscopy] viaWWW:LR White ISH Troubleshooting

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Email: walter.bobrowski-at-pfizer.com Name: Walt Bobrowski

Organization: MSA

Title-Subject: [Filtered] LR White ISH Troubleshooting

Message: Intranuclear RNA ISH on formalin-fixed paraffin embedded
working fine. Attempts to perform same on paraformaldehyde-fixed, LR
White embedded samples at the light level meet with no success. Liver
samples fixed in 4% PF, dehydrated through 95% EtOH, and heat cured
(55C) in LR White. Attempting ISH on 2um thick sections. All references
indicate this should work with no problem. Have tried protease and
Triton-x pretreatments of varying concentrations and times. Any and all
trouble-shooting tips would be welcome (including section preparation
steps to avoid).

Also welcome are tips to get 1.5-2um thick sections to lay flat on glass
slides without heat application.
Thanks in advance!
Walt

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From: Frank_Karl-at-lincolnelectric.com
Date: Thu, 17 Mar 2011 14:26:05 -0500
Subject: [Microscopy] SEM: to table top or not, that is the question

Contents Retrieved from Microscopy Listserver Archives
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Hello Jim,
I don't have experience with table top SEMs, but your job sounds like what
I did at Goodyear, or at least the equipment sounds the same.
I agree you don't want a research grade SEM, but I think you will find you
need more than a table top.

I found I used both secondary electron (detailed pictures) and backscatter
electron (helps me find the areas with different average atomic number for
EDS) as well as EDS. I found some plastics charged so bad I needed to gold
or carbon coat, and I found the Pd/Pt interfered the least with the
elements I was interested in. You should consider a sputter.

An environmental SEM, with provisions for reduced vacuum (and reduced
charging) in the sample chamber, proved so useful for looking at difficult
to coat samples like carbon black pellets, glassy spheres on conductive
tape and so many other specimens, but you can only use backscatter because
problems with light caused by an interaction of low pressure gas and
electrons.

I can't tell you how many times I've used different acceleration KVs I
want 30 KV for S and Mo detection. Surface details on paint, plastic or
the insect built in to your product might call for 4kv. I like 25kv for
steel but 15kv for thinish films.

Of course not all your specimens will be orientated in the chamber for best
imaging or EDS, so the more rotation and tilt you have the better. Don't
forget the Z axis. Not all samples will be the same size and I'll forsaken
EDS data to increase the Z axis to get lower magnification images. I still
wish I could get 10x magnification on some samples. The ability to have
different apertures to change the depth of focus has proven invaluable.
It's not always about high magnification, sometime you want the peaks and
valleys of an irregular surface in focus.

Your experience will be different, but anticipate that your uses in 5 years
will not be the same as now. I would suggest a medium range SEM with mag
up to 50k and a large chamber will serve you better in the long rum.

And don't forget about the room the scope is going in: low magnetic
fields, low vibrations and constant current and voltage are a must to get
the best out of your SEM.

Keep us informed.

Frank Karl
Lincoln Electric

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From: William.F.Tivol-at-aero.org
Date: 03/14/2011 06:06 PM
Subject: [Microscopy] Microtome salt crystals

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Debby,
At one point I was trying to embed pine seeds, which also had a
tendency to come out of the resin when we tried to section them. We
adjusted the hardness of the resin to try to match the resin to the seeds,
and we got one formulation that worked fairly well to retain the seeds in
the sections. I would try this with your salt crystals. Good luck.
Yours,
Bill



X-from: dsherman-at-purdue.edu
To: William.F.Tivol-at-aero.org



We have been asked to microtome salt crystals. The crystals will be on the
order of 120nm and sections need to be under 5µm. I assume that we will
have to embed the crystals and then try to make ~2µm sections using glass
knives. I am concerned that the crystals might damage diamond knives.

I thought to use Spurrs resin but do not know if we will actually get
infiltration sufficient to keep the crystals from falling out. Sections
will have to be cut dry since water would dissolve the crystal.

Any suggestions as to type of embedding resin would be appreciated or
experience in microtoming similar samples.

Debby



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From: lkerr-at-mbl.edu
Date: Thu, 17 Mar 2011 21:22:05 -0500
Subject: [Microscopy] Re: Zeiss EM10 TEM Parts

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Hello all,

My trusty old Zeiss EM10CA TEM is having problems and I would like to know if anyone has spare parts, or a whole spare parts instrument, sitting around. Specifically I am in need of the "cascade" unit that sits on top of the high voltage tank. If you think you have a cascade and are willing to part with it I would like to hear from you.


For those curious about the symptoms or those wanting to help diagnose the problem:

The filament is good, the lenses have current, the column is under a good vacuum. With the high tension off there is no beam current. When I turn on the high tension without turning on the filament the beam current immediately goes to around 50uA and then creeps upwards to as high as 200uA. Therefore there is a leakage of current. When I turn on the filament, with or without the high tension, the current reading stays the same and a small circle of illumination shows on the phosphor screen. The circle is about 5mm in diameter and does not change with a change in Condenser 1 setting, mag setting or adjusting the beam alignments controls. It can be occluded using the retractable apertures.

The engineer has traced the problem to the cascade device.

Thanks,
Louie

--


Louis Kerr
lkerr-at-mbl.edu

Research and Education Support Coordinator
Marine Biological Laboratory
7 MBL Street
Woods Hole, MA 02543
508-289-7273
508-540-6902 (FAX)
508-292-0289 (Cell phone)

VISIT OUR WEB SITES:
www.mbl.edu
www.courses.mbl.edu

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From: stefan.diller-at-t-online.de
Date: Fri, 18 Mar 2011 01:19:07 -0500
Subject: [Microscopy] Zeiss EM10 TEM Parts

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Louie,
this sounds to me more like a problem with a shortened high voltage cable, not the cascade.
I have both the cascade and the cable. Contact me off-list, if you are interested.

Best regards,
Stefan

-------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D-97072 Wuerzburg Germany
Tel. +49-931-7848700
Fax +49-931-7848701
Mobile +49-175-7177051

Email: diller-at-stefan-diller.com
Websites: www.stefan-diller.com
www.elektronenmikroskopie.info
www. assisi.de
--------------------------------------------

Am 18.03.2011 um 03:26 schrieb lkerr-at-mbl.edu:

}
}
}
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} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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}
} Hello all,
}
} My trusty old Zeiss EM10CA TEM is having problems and I would like to know if anyone has spare parts, or a whole spare parts instrument, sitting around. Specifically I am in need of the "cascade" unit that sits on top of the high voltage tank. If you think you have a cascade and are willing to part with it I would like to hear from you.
}
}
} For those curious about the symptoms or those wanting to help diagnose the problem:
}
} The filament is good, the lenses have current, the column is under a good vacuum. With the high tension off there is no beam current. When I turn on the high tension without turning on the filament the beam current immediately goes to around 50uA and then creeps upwards to as high as 200uA. Therefore there is a leakage of current. When I turn on the filament, with or without the high tension, the current reading stays the same and a small circle of illumination shows on the phosphor screen. The circle is about 5mm in diameter and does not change with a change in Condenser 1 setting, mag setting or adjusting the beam alignments controls. It can be occluded using the retractable apertures.
}
} The engineer has traced the problem to the cascade device.
}
} Thanks,
} Louie
}
} --
}
}
} Louis Kerr
} lkerr-at-mbl.edu
}
} Research and Education Support Coordinator
} Marine Biological Laboratory
} 7 MBL Street
} Woods Hole, MA 02543
} 508-289-7273
} 508-540-6902 (FAX)
} 508-292-0289 (Cell phone)
}
} VISIT OUR WEB SITES:
} www.mbl.edu
} www.courses.mbl.edu
}
} ==============================Original Headers==============================
} 12, 32 -- From lkerr-at-mbl.edu Thu Mar 17 21:22:05 2011
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==============================Original Headers==============================
7, 25 -- From stefan.diller-at-t-online.de Fri Mar 18 01:19:06 2011
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From: protrain-at-emcourses.com
Date: Fri, 18 Mar 2011 04:48:24 -0500
Subject: [Microscopy] Re: Zeiss EM10 TEM Parts

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

I see your email with interest, particularly your "bright spot"!

Firstly the problem you outline is due to the high voltage generator or the
cable? A simple test is to disconnect the high voltage cable from the tank
and repeat your actions. If there is a change in current it suggests that
it is the cable that is the problem? If this is the case a local high
voltage company, working with x-ray sets for example, should be able to
refurbish it for you at a fraction of what the original equipment
manufacturers charge.

However back to your "bright spot"! What you are seeing is the illumination
generated by the filament being heated; you are seeing "light" from the tip
rather than electrons! This phenomenon has always been around and has
confused engineers/technicians re aligning and instrument after a strip down
for decades. Having found what they think is the beam they are loathe to
lose it and that is often what is required to find the true "electron beam".

Good luck with the high voltage problem

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: lkerr-at-mbl.edu [mailto:lkerr-at-mbl.edu]
Sent: 18 March 2011 02:23
To: protrain-at-emcourses.com

Hello all,

My trusty old Zeiss EM10CA TEM is having problems and I would like to know
if anyone has spare parts, or a whole spare parts instrument, sitting
around. Specifically I am in need of the "cascade" unit that sits on top of
the high voltage tank. If you think you have a cascade and are willing to
part with it I would like to hear from you.


For those curious about the symptoms or those wanting to help diagnose the
problem:

The filament is good, the lenses have current, the column is under a good
vacuum. With the high tension off there is no beam current. When I turn on
the high tension without turning on the filament the beam current
immediately goes to around 50uA and then creeps upwards to as high as 200uA.
Therefore there is a leakage of current. When I turn on the filament, with
or without the high tension, the current reading stays the same and a small
circle of illumination shows on the phosphor screen. The circle is about 5mm
in diameter and does not change with a change in Condenser 1 setting, mag
setting or adjusting the beam alignments controls. It can be occluded using
the retractable apertures.

The engineer has traced the problem to the cascade device.

Thanks,
Louie

--


Louis Kerr
lkerr-at-mbl.edu

Research and Education Support Coordinator
Marine Biological Laboratory
7 MBL Street
Woods Hole, MA 02543
508-289-7273
508-540-6902 (FAX)
508-292-0289 (Cell phone)

VISIT OUR WEB SITES:
www.mbl.edu
www.courses.mbl.edu

==============================Original Headers==============================
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From: protrain-at-emcourses.com
Date: Fri, 18 Mar 2011 05:18:41 -0500
Subject: [Microscopy] SEM: to table top or not, that is the question

Contents Retrieved from Microscopy Listserver Archives
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Hi

Watching the replies I think I sit in the middle between the comments
generated so far.

Only last week I was using a "table top" with clients and I am always amazed
at how good they are and with EDS they make a great tool. However I often
have difficulty with the limited range of accelerating voltages.

There is always an accelerating voltage that displays the information from a
specimen better than any other. At the same time there is often a
considerable difference in what is visualised by the table top backscattered
electron image and an Everhart-Thornley image. True, we see less charge
with backscatter as used in the table top instruments, but there are times
when a secondary image is the only one that will suffice!

Then there is another problem that moving to backscatter does not remove
charge, the effect is just minimised. However if you want EDS
quantification you cannot afford to have any charge as this will spoil the
results. The EDS computing system is unable to account for the reduction in
beam potential as the charge builds!

So provided your applications are in what I would call the "super light
microscope" area and you want basic EDS, the table top is a great asset. If
you are taking your science further you need an instrument with a wider
range of accelerating voltages and the option to use secondary electron
signals. In either case I would purchase a sputter coater and a carbon head
to stabilise difficult specimens; backscatter is not the answer to
everything.

That said I do think the "table tops" are great but in the right
environment.

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com






-----Original Message-----
X-from: Frank_Karl-at-lincolnelectric.com [mailto:Frank_Karl-at-lincolnelectric.com]

Sent: 17 March 2011 19:27
To: protrain-at-emcourses.com



Hello Jim,
I don't have experience with table top SEMs, but your job sounds like what
I did at Goodyear, or at least the equipment sounds the same.
I agree you don't want a research grade SEM, but I think you will find you
need more than a table top.

I found I used both secondary electron (detailed pictures) and backscatter
electron (helps me find the areas with different average atomic number for
EDS) as well as EDS. I found some plastics charged so bad I needed to gold
or carbon coat, and I found the Pd/Pt interfered the least with the
elements I was interested in. You should consider a sputter.

An environmental SEM, with provisions for reduced vacuum (and reduced
charging) in the sample chamber, proved so useful for looking at difficult
to coat samples like carbon black pellets, glassy spheres on conductive
tape and so many other specimens, but you can only use backscatter because
problems with light caused by an interaction of low pressure gas and
electrons.

I can't tell you how many times I've used different acceleration KVs I
want 30 KV for S and Mo detection. Surface details on paint, plastic or
the insect built in to your product might call for 4kv. I like 25kv for
steel but 15kv for thinish films.

Of course not all your specimens will be orientated in the chamber for best
imaging or EDS, so the more rotation and tilt you have the better. Don't
forget the Z axis. Not all samples will be the same size and I'll forsaken
EDS data to increase the Z axis to get lower magnification images. I still
wish I could get 10x magnification on some samples. The ability to have
different apertures to change the depth of focus has proven invaluable.
It's not always about high magnification, sometime you want the peaks and
valleys of an irregular surface in focus.

Your experience will be different, but anticipate that your uses in 5 years
will not be the same as now. I would suggest a medium range SEM with mag
up to 50k and a large chamber will serve you better in the long rum.

And don't forget about the room the scope is going in: low magnetic
fields, low vibrations and constant current and voltage are a must to get
the best out of your SEM.

Keep us informed.

Frank Karl
Lincoln Electric

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From: hyi-at-emory.edu
Date: Fri, 18 Mar 2011 08:05:01 -0500
Subject: [Microscopy] RMC Ultramicrotome

Contents Retrieved from Microscopy Listserver Archives
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Hi Steve and Stefan,

I forgot to include one test the service engineer and that was to disconnect the HV cable from the HV tank. The leakage current was the same. He did some further test to narrow it down to the cascade device but of course it there could be a cascade of issues that only come to light as each part is repaired.

Thank you for your response about the filament "light". I thought it might be something like that because nothing changes it except for a physical barrier. It indicates that there is no high voltage reaching the gun.

Thanks again,
Louie

----- Original Message -----
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To: lkerr -at- mbl . edu
Cc: "Microscopical Soc of America" {microscopy-at-microscopy.com}
Sent: Friday, March 18, 2011 5:47:52 AM

Dear All:

I would like to hear comments (on microtome itself and service) from people=
who own RMC microtomes. Please email me at hyi-at-emory.edu. Thank you all =
very much in advance.

Hong

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From: oshel1pe-at-cmich.edu
Date: Mon, 21 Mar 2011 07:08:18 -0500
Subject: [Microscopy] Bacterial flagella & pili study

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

} Date: Sat, 19 Mar 2011 01:34:03 -0700
} From: Benjamin Brezler {benjamin.brezler-at-gmail.com}
}
} Below is the result of your form, submitted on Saturday, March 19,
} 2011 at 01:33:49 AM.
}
} realname - Benjamin Brezler
} Email - benjamin.brezler-at-gmail.com
} ORGANIZATION - San Francisco State University (SFSU)
} EDUCATION - Graduate College
} LOCATION - San Francisco, CA, USA
} SUBJECT_OF_QUESTION - Staining Microbial Samples for SEM
} QUESTION - Dear MSA,
} I am a Master's student at SFSU, and my project involves working
} with flagellated Gram-negative bacteria. I am trying to compare the
} quality and number of flagella in wild-type and mutant strains of
} these bacteria. The project has been quite challenging, and I am
} hoping to get some advice that will help me stain and image flagella
} and pili. I have reviewed several books (by Hayat, Goldstein, and
} Bazzola) and several research articles. However, I can't seem to
} find a protocol to work with.
}
} Any advice, suggestions, references, or contacts would be greatly appreciated.
}
} Thank you,
} Benjamin Brezler
}
} PS: I have been fixing with glutaraldehyde in sodium cacodylate,
} dehydrating with an ethanol series, and then trying various
} different stains (phosphotungstic acid, uranyl acetate, and osmium
} tetroxide), but I'm not sure if I'm using them properly (i.e. at the
} right concentrations, pH, staining for long enough, etc.).
}
--
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From: bozzola-at-siu.edu
Date: Mon, 21 Mar 2011 08:51:16 -0500
Subject: [Microscopy] Re: Bacterial flagella & pili study

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello,

The best way to image such fragile structures as flagella and pili is
to use negative staining methods. A couple months ago, I obtained some
excellent images of flagella in Paenebacillus (grown on agar medium)
with a very simple procedure, as follows:

1. Using Formvar and carbon-coated 200 mesh grids (held with a fine
tweezers), touch the edge of the colony very lightly with the grid.

2. Float the grid on a droplet of 1% aqueous uranyl acetate for 30
sec. (Note: Keep the UA out of direct light (especially sunlight) as
much as possible.)

3. Remove grid and touch edge to a filter paper to wick away stain.

4. Place on a filter paper and allow to dry.

5. Examine in TEM.

If you have a liquid culture, mix one drop of culture with UA and
float grid on the mixture for 1 min. Then, follow steps 3-5.

UA worked best for me (versus phosphotungstate); however, it does have
some shortcomings. You must avoid phosphate (buffers, etc.) since this
will precipitate the UA. Sometimes, as was the case with my own study,
you can still use the UA prep, even with the precipitate. However, it
is an awful mess and you will spend a lot of time looking for the
rare, clean areas on the grid. If this is too messy for you, then you
should try 2% phosphotungstate (adjusted to pH 6.5 with 1 N KOH).

I can send you an image, if you like, to show you what to expect.

JB



On Mon, Mar 21, 2011 at 7:09 AM, {oshel1pe-at-cmich.edu} wrote:
}
}
}
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} ----------------------------------------------------------------------------
}
} } Date: Sat, 19 Mar 2011 01:34:03 -0700
} } From: Benjamin Brezler {benjamin.brezler-at-gmail.com}
} }
} } Below is the result of your form, submitted on Saturday, March 19,
} } 2011 at 01:33:49 AM.
} }
} } realname - Benjamin Brezler
} } Email - benjamin.brezler-at-gmail.com
} } ORGANIZATION - San Francisco State University (SFSU)
} } EDUCATION - Graduate College
} } LOCATION - San Francisco, CA, USA
} } SUBJECT_OF_QUESTION - Staining Microbial Samples for SEM
} } QUESTION - Dear MSA,
} } I am a Master's student at SFSU, and my project involves working
} } with flagellated Gram-negative bacteria. I am trying to compare the
} } quality and number of flagella in wild-type and mutant strains of
} } these bacteria. The project has been quite challenging, and I am
} } hoping to get some advice that will help me stain and image flagella
} } and pili. I have reviewed several books (by Hayat, Goldstein, and
} } Bazzola) and several research articles. However, I can't  seem to
} } find a protocol to work with.
} }
} } Any advice, suggestions, references, or contacts would be greatly appreciated.
} }
} } Thank you,
} } Benjamin Brezler
} }
} } PS: I have been fixing with glutaraldehyde in sodium cacodylate,
} } dehydrating with an ethanol series, and then trying various
} } different stains (phosphotungstic acid, uranyl acetate, and osmium
} } tetroxide), but I'm not sure if I'm using them properly (i.e. at the
} } right concentrations, pH, staining for long enough, etc.).
} }
} --
} ***************************************************************************************
} Forwarded from "Ask a Microscopist"



--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
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From: I.J.Portman-at-warwick.ac.uk
Date: Mon, 21 Mar 2011 10:38:33 -0500
Subject: [Microscopy] Bacterial flagella & pili study

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Benjamin

you mention the use of buffered glutaraldehyde and dehydration for
observing pili and flagella but the usual method is to simply negative
stain unfixed cells. Trying to carry out negative stains on fixed
bacteria is difficult and dehydration would not help.

Flagella and pili can be fragile and are best examined from a fresh
culture with a simple direct negative stain. Sometimes the medium in
the culture is so dense that it can make a good stain difficult. A
gentle spin and wash of bacteria helps but can also damage sensitive
flagella and pili.

I've found a variety of negative stains useful for pili and flagella.
Ammonium molybdate can be very useful for bacteria but potassium
phosphotungstate or uranyl acetate will work too. I usually keep the
stains as a stock solution of 2% and try dilutions of between 0.5% and
2% (ie 1/4 to neat). The more dilute stains if carefully dried seem to
be better for fine pili.

Malcolm

Malcolm Haswell
Imaging Suite
Faculty of Applied Sciences
University of Sunderland
SUNDERLAND
SR1 3SD
UK
email: malcolm.haswell-at-sunderland.ac.uk


----- Original Message -----
X-from: oshel1pe-at-cmich.edu

To reiterate what others have been saying here, pili are very easily
disrupted so the shorter the processing the better. I spent ages
working on samples for a student who was trying to remove pili to block
biofilm formation before I figured out that they'd stripped control
samples of pili by simply aspirating the cells with a pipette. 2%
uranium acetate for 30 seconds has been about the most reliable method
for me, I've got some great images just by dipping a grid into pond
water, blotting and spotting on UA.
Cheers
Ian

-----Original Message-----
X-from: oshel1pe-at-cmich.edu [mailto:oshel1pe-at-cmich.edu]
Sent: 21 March 2011 12:18
To: Portman, Ian

} Date: Sat, 19 Mar 2011 01:34:03 -0700
} From: Benjamin Brezler {benjamin.brezler-at-gmail.com}
}
} Below is the result of your form, submitted on Saturday, March 19,
} 2011 at 01:33:49 AM.
}
} realname - Benjamin Brezler
} Email - benjamin.brezler-at-gmail.com
} ORGANIZATION - San Francisco State University (SFSU)
} EDUCATION - Graduate College
} LOCATION - San Francisco, CA, USA
} SUBJECT_OF_QUESTION - Staining Microbial Samples for SEM
} QUESTION - Dear MSA,
} I am a Master's student at SFSU, and my project involves working
} with flagellated Gram-negative bacteria. I am trying to compare the
} quality and number of flagella in wild-type and mutant strains of
} these bacteria. The project has been quite challenging, and I am
} hoping to get some advice that will help me stain and image flagella
} and pili. I have reviewed several books (by Hayat, Goldstein, and
} Bazzola) and several research articles. However, I can't seem to
} find a protocol to work with.
}
} Any advice, suggestions, references, or contacts would be greatly
appreciated.
}
} Thank you,
} Benjamin Brezler
}
} PS: I have been fixing with glutaraldehyde in sodium cacodylate,
} dehydrating with an ethanol series, and then trying various
} different stains (phosphotungstic acid, uranyl acetate, and osmium
} tetroxide), but I'm not sure if I'm using them properly (i.e. at the
} right concentrations, pH, staining for long enough, etc.).
}
--
************************************************************************
***************



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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 21 Mar 2011 13:51:32 -0500
Subject: [Microscopy] viaWWW:Workshop on In-situ and remote electron microscopy

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Email: degraef-at-cmu.edu Name: Marc DeGraef

Organization: Carnegie Mellon University

Title-Subject: [Filtered] Workshop on In-situ and remote electron microscopy

Message: Dear colleague,

every two years or so an international workshop is held on the topics of
remote and in-situ microscopy (both SEM and TEM based). The third
workshop in this series will be held at Carnegie Mellon University in
Pittsburgh, USA, on June 6-8, 2011. The previous two workshops were
held at Stanford (Bob Sinclair) and at Goteborg (Eva Olsson); the size
of the workshop is anticipated to be around 80 people. Several
microscope and related equipment vendors will also be present.

On behalf of the organizers, I would like to invite you to attend this
workshop. All information can be found on the web site
http://mpg.web.cmu.edu/CMU-IWREMISS-2011.html. Registration (on a
first-come, first -serve basis) is free for academic members and
students, $400 for industrial attendees. There will be a continuous
poster session, so if you have anything you wish to contribute, let us
know and we will accommodate your poster.

For more information, please contact Marc DeGraef at degraef-at-cmu.edu.

With kind regards,
Marc De Graef.

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From: larry.ackerman-at-ucsf.edu
Date: Mon, 21 Mar 2011 15:37:15 -0500
Subject: [Microscopy] Beam Stability

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

What is a reasonable length of time to wait for a beam to stabilize? I
take a series of 256 images with a 120kV TEM and have found that I have
to wait one to two hours for the beam current to stabilize sufficiently
to provide equidense images for montaging or analysis. The beam
instability ocurrs even without apertures or specimen inserted and with
both tungsten and Lab6 filaments--the Lab6 does seem to take longer to
stabilize.

Thanks,
Larry
--
Larry Ackerman, Specialist
Electron Microscopy Lab
Manager, Diabetes & Endocrinology Research Center Microscopy Core
UCSF, Dept. of Anatomy, Rm S1355
513 Parnassus Ave., Box 0452
San Francisco, CA 94143

larry.ackerman-at-ucsf.edu

415-999-4758

==============================Original Headers==============================
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From: kenconverse-at-qualityimages.biz
Date: Mon, 21 Mar 2011 17:01:53 -0500
Subject: [Microscopy] Beam Stability

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Larry,
There are 2 areas that need to stabilize, both thermally. One is the high
voltage power supply. The components change value slightly with temperature
so the output (actual kV and filament current) may drift slightly until
everything equilibrates.

The other area is the gun. The cathode to wehnelt distance changes as the
gun changes temperature (so does the wehnelt to anode distance). That
spacing is far more critical for LaB6, hence the longer time to stabilize.

My SEM customers who do ebeam lithography generally don't even reduce their
Lab6 cathodes to the standby temperature. They leave the gun fully at
temperature and saturated. The cost is that the cathodes get replaced every
6 months. Since they often operate at 40kV (high for an SEM), I always had
them reduce the kV to 20 when they weren't using the system. Aside from
protecting the high voltage power supply and some of the gun components,
this also keeps the lenses warm. Yup, that's a third area that needs to
stabilize thermally, but it doesn't seem to be as critical as the first two
areas.

If your TEM is stabilizing in 1-2 hours from a cold start, I'm stunned! The
thermal masses involved in both the power supply and the gun are probably
far greater than most SEMs. If it takes that long from a semi-warmed up
standby situation, then there might possibly be some kind of issue, but
maybe not. 1-2 hours for high stability doesn't strike me as at all
unreasonable.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
Fax 207-647-2688
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: larry.ackerman-at-ucsf.edu [mailto:larry.ackerman-at-ucsf.edu]
Sent: Monday, March 21, 2011 4:40 PM
To: kenconverse-at-qualityimages.biz

What is a reasonable length of time to wait for a beam to stabilize? I
take a series of 256 images with a 120kV TEM and have found that I have
to wait one to two hours for the beam current to stabilize sufficiently
to provide equidense images for montaging or analysis. The beam
instability ocurrs even without apertures or specimen inserted and with
both tungsten and Lab6 filaments--the Lab6 does seem to take longer to
stabilize.

Thanks,
Larry
--
Larry Ackerman, Specialist
Electron Microscopy Lab
Manager, Diabetes & Endocrinology Research Center Microscopy Core
UCSF, Dept. of Anatomy, Rm S1355
513 Parnassus Ave., Box 0452
San Francisco, CA 94143

larry.ackerman-at-ucsf.edu

415-999-4758

==============================Original Headers==============================
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19, 28 -- Subject: RE: [Microscopy] Beam Stability
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From: larry.ackerman-at-ucsf.edu
Date: Mon, 21 Mar 2011 17:14:38 -0500
Subject: [Microscopy] Re: Beam Stability

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The time to stabilize that I mentioned starts when the filament is
heated after a sample change. The high voltage is never off--for months
and the lenses at 40,000X when not doing microscopy which is typically
1000--10,000X

Thanks,
Larry

Ken Converse wrote:
} Larry,
} There are 2 areas that need to stabilize, both thermally. One is the high
} voltage power supply. The components change value slightly with temperature
} so the output (actual kV and filament current) may drift slightly until
} everything equilibrates.
}
} The other area is the gun. The cathode to wehnelt distance changes as the
} gun changes temperature (so does the wehnelt to anode distance). That
} spacing is far more critical for LaB6, hence the longer time to stabilize.
}
} My SEM customers who do ebeam lithography generally don't even reduce their
} Lab6 cathodes to the standby temperature. They leave the gun fully at
} temperature and saturated. The cost is that the cathodes get replaced every
} 6 months. Since they often operate at 40kV (high for an SEM), I always had
} them reduce the kV to 20 when they weren't using the system. Aside from
} protecting the high voltage power supply and some of the gun components,
} this also keeps the lenses warm. Yup, that's a third area that needs to
} stabilize thermally, but it doesn't seem to be as critical as the first two
} areas.
}
} If your TEM is stabilizing in 1-2 hours from a cold start, I'm stunned! The
} thermal masses involved in both the power supply and the gun are probably
} far greater than most SEMs. If it takes that long from a semi-warmed up
} standby situation, then there might possibly be some kind of issue, but
} maybe not. 1-2 hours for high stability doesn't strike me as at all
} unreasonable.
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} Fax 207-647-2688
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} -----Original Message-----
} From: larry.ackerman-at-ucsf.edu [mailto:larry.ackerman-at-ucsf.edu]
} Sent: Monday, March 21, 2011 4:40 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] Beam Stability
}
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} What is a reasonable length of time to wait for a beam to stabilize? I
} take a series of 256 images with a 120kV TEM and have found that I have
} to wait one to two hours for the beam current to stabilize sufficiently
} to provide equidense images for montaging or analysis. The beam
} instability ocurrs even without apertures or specimen inserted and with
} both tungsten and Lab6 filaments--the Lab6 does seem to take longer to
} stabilize.
}
} Thanks,
} Larry

--
Larry Ackerman, Specialist
Electron Microscopy Lab
Manager, Diabetes & Endocrinology Research Center Microscopy Core
UCSF, Dept. of Anatomy, Rm S1355
513 Parnassus Ave., Box 0452
San Francisco, CA 94143

larry.ackerman-at-ucsf.edu

415-999-4758

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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Mon, 21 Mar 2011 17:28:14 -0500
Subject: [Microscopy] Beam Stability

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


} What is a reasonable length of time to wait for a beam to stabilize? I
} take a series of 256 images with a 120kV TEM and have found that I have
} to wait one to two hours for the beam current to stabilize sufficiently
} to provide equidense images for montaging or analysis. ....

to this point: in our faculty-EM-facility, we are using a 120 keV TEM, vintage 1990 - daily, with (regularly) 10+X different users. Standard voltage is 120 keV, always, since more than 18 years. LaB6, always; lifetime; about 3 or up to 3.5 years . Vacuum excellent and stable: Rot, ODP plus IGP, plus always LN2; cryo cycle (IGP off) every evening for 4 hrs; computer-controlled HT and filament start every morning, with wobbling the HT at 120 keV. -- LaB6 is cold for specimen change, always; re-heated for 19 x 5 sec, each time. After this, we can start recording "equidense" images almost immediately (after 3 to 5 min "searching"). -- Yes, some Master or even phD students don't see or experience a change of a filament. (I have an old one, on the bench, for demo).
We take digital micrographs on a 12bit 1k camera since 12 years, with lots of stitching, daily, and never experience problems with instability or uneven or varying density (at least not observed / observable!). We do take montages with usually 4 x 4, up to 8 x 8 (or more) frames. - If there are problems, then they are related to "too old" dark and flat fields , which are used for correcting the digital images. Dark/Flat fields are needed about once a week, but sometimes only in 2 or 3 weeks. (no cryo work at very low dose!) -- ((only problems when working with new or old filament))
kind regards - Reinhard

--
Prof. Dr. Reinhard Rachel
Universitaet Regensburg
Centre for EM / Anatomy
Faculty for Biology&Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29



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From: protrain-at-emcourses.com
Date: Tue, 22 Mar 2011 04:57:07 -0500
Subject: [Microscopy] Beam Stability

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

After many years of taking commissioning test pictures to prove the
performance of TEM and SEM it is clear there are a number of features that
need to be taken into account.

In my early days as a service technician (probably 1965 to 1970) I was
amazed how it always took me about three hours to "get in the groove" when I
was taking pictures for final commissioning. Then I noticed if I simply
switched the high voltage on, with the specimen in the instrument, and to
return about two to three hours later, I had a test picture within half an
hour. Eureka, when I then realised about high voltage stability - heat
gained must equal heat lost.

Having a very nice meal with a client one evening he suggested that we go
back to the lab and I take a test picture on the TEM that they have just
moved from one lab to another. With the same simplistic reasoning I thought
"Oh no three hours!". But I had forgot the instrument had a gas filled tank
and was thrilled to within forty five minutes have the test resolution
actually visible on the screen; no picture required! Silly me, I always
through they gave us a gas filled tank so it was less of a mess going in to
change components, not that it cut down mass!

Working with automated analytical SEM we found that the backscattered
electron results and x-ray emission did not become stable for some hours
after specimen exchange. Investigating the problem colleagues found that
when the vacuum in the gun became absolutely stable so did the results!
Outgassing the samples prior to placing them in the microscope halved the
time for stability to be reached.

Of course a cathode assembly will need to become thermally stable, but it is
the other areas that take the longest time.

So putting all the knowledge together here are the results-

Transmission Instruments

1. High voltage generator - the critical period is the time taken for
heat gained to equal heat lost once the high voltage has been switched on

Which relates to the type of high voltage tank (generator box if you
like)
a) Oil filled tanks take up to three hours to stabilise
depending on how large the tank is.
b) Gas filled tanks generally take about an hour or so to reach
stability.

2. The vacuum system in the gun also has to be absolutely stable, the
speed of pumping matching the leakage. This will relate to when the gun
chamber was last opened.

Scanning Instruments

1. The high voltage tank is very much smaller and in general stability
is reached within a hour.

2. If the electron gun is brought to atmosphere each time a specimen is
exchanged, depending how gassy the routine specimens are, it may take over
two hours for the gun vacuum to stabilise.

Both of these sets of comment assume that there are no electronic problems
with the instruments high voltage circuitry.

Hope this helps.

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: larry.ackerman-at-ucsf.edu [mailto:larry.ackerman-at-ucsf.edu]
Sent: 21 March 2011 20:38
To: protrain-at-emcourses.com

What is a reasonable length of time to wait for a beam to stabilize? I
take a series of 256 images with a 120kV TEM and have found that I have
to wait one to two hours for the beam current to stabilize sufficiently
to provide equidense images for montaging or analysis. The beam
instability ocurrs even without apertures or specimen inserted and with
both tungsten and Lab6 filaments--the Lab6 does seem to take longer to
stabilize.

Thanks,
Larry
--
Larry Ackerman, Specialist
Electron Microscopy Lab
Manager, Diabetes & Endocrinology Research Center Microscopy Core
UCSF, Dept. of Anatomy, Rm S1355
513 Parnassus Ave., Box 0452
San Francisco, CA 94143

larry.ackerman-at-ucsf.edu

415-999-4758

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From: bozzola-at-siu.edu
Date: Tue, 22 Mar 2011 08:13:09 -0500
Subject: [Microscopy] Beam Stability

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve,

Thanks for sharing this valuable information.

JB

} Hi
}
} After many years of taking commissioning test pictures to prove the
} performance of TEM and SEM it is clear there are a number of features that
} need to be taken into account.
}
} In my early days as a service technician (probably 1965 to 1970) I was
} amazed how it always took me about three hours to "get in the groove" when I
} was taking pictures for final commissioning.  Then I noticed if I simply
} switched the high voltage on, with the specimen in the instrument, and to
} return about two to three hours later, I had a test picture within half an
} hour.  Eureka, when I then realised about high voltage stability - heat
} gained must equal heat lost.
}
} Having a very nice meal with a client one evening he suggested that we go
} back to the lab and I take a test picture on the TEM that they have just
} moved from one lab to another. With the same simplistic reasoning I thought
} "Oh no three hours!".  But I had forgot the instrument had a gas filled tank
} and was thrilled to within forty five minutes have the test resolution
} actually visible on the screen; no picture required!  Silly me, I always
} through they gave us a gas filled tank so it was less of a mess going in to
} change components, not that it cut down mass!
}
} Working with automated analytical SEM we found that the backscattered
} electron results and x-ray emission did not become stable for some hours
} after specimen exchange.  Investigating the problem colleagues found that
} when the vacuum in the gun became absolutely stable so did the results!
} Outgassing the samples prior to placing them in the microscope halved the
} time for stability to be reached.
}
} Of course a cathode assembly will need to become thermally stable, but it is
} the other areas that take the longest time.
}
} So putting all the knowledge together here are the results-
}
} Transmission Instruments
}
} 1.      High voltage generator - the critical period is the time taken for
} heat gained to equal heat lost  once the high voltage has been switched on
}
}        Which relates to the type of high voltage tank (generator box if you
} like)
}        a)      Oil filled tanks take up to three hours to stabilise
} depending on how large the tank is.
}        b)      Gas filled tanks generally take about an hour or so to reach
} stability.
}
} 2.      The vacuum system in the gun also has to be absolutely stable, the
} speed of pumping matching the leakage.  This will relate to when the gun
} chamber was last opened.
}
} Scanning Instruments
}
} 1.      The high voltage tank is very much smaller and in general stability
} is reached within a hour.
}
} 2.      If the electron gun is brought to atmosphere each time a specimen is
} exchanged, depending how gassy the routine specimens are, it may take over
} two hours for the gun vacuum to stabilise.
}
} Both of these sets of comment assume that there are no electronic problems
} with the instruments high voltage circuitry.
}
} Hope this helps.
}
} Steve
}
} Steve Chapman FRMS
} Senior Consultant Protrain
} For consultancy and training in electron microscopy world wide
} Tel +44 (0)1280 816512  Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
} www.emcourses.com
}
--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: kyle.colavito-at-gmail.com
Date: Tue, 22 Mar 2011 12:58:12 -0500
Subject: [Microscopy] SEM - Need help troubleshooting a Hitachi S-650

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,

There is an old SEM (Hitachi s-650) in the lab that I work in and it has
worked fine for a number of years.  Upon turning it on a couple of months
ago the displays weren't working correctly.

In normal operation the scan line starts at the bottom of the screen, but
now there is a line across the middle of each the screen where the vertical
scan starts.  When you push the waveform button the line scan is present at
the middle of the screen rather than the bottom.  It does not react to a
increase in current.  From the gauge you can tell that the current is
increasing across the filament and upon inspection the filament is not
ruined.

Under normal scanning it scans down from the line in screen 1 to the bottom
and then from the top of screen 2 down to the line.

Screen 1
______________
|                        |
|                        |
|                        |
|------------------------|
|                        |
|                        |
|______________|

Screen 2
______________
|                        |
|                        |
|------------------------|
|                        |
|                        |
|                        |
|______________|


I believe that it is an electronics issue based on the behavior and as the
machine is not exactly new, one of the boards could have gone bad.  If
anyone has any suggestion I would greatly appreciate it.

Thanks for your time,

Kyle

Kyle Colavito
Mechanical Engineering
University of Arizona
Work (520) 626-5225
Lab (520) 621-6092
Cell (520)250-8409
kcolavit-at-u.arizona.edu
kyle.colavito-at-gmail.com


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12, 33 -- Subject: SEM - Need help troubleshooting a Hitachi S-650
12, 33 -- From: kyle colavito {kyle.colavito-at-gmail.com}
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From: cpawlowicz-at-ubmtechinsights.com
Date: Tue, 22 Mar 2011 14:50:01 -0500
Subject: [Microscopy] Scion framegrabber drivers?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


We have a microscope/RGB digital camera/PC winXP setup which uses a Scion CG7 Framegrabber (~6 years old).. the PC just went up in smoke and of course the drivers for the framegrabber are nowhere to be found.. and scioncorp.com (and their phone#s) are no longer alive..

It seems a pity to junk a framegrabber and camera for lack of a driver.. does anybody have one of these that might be able to give me a copy of the installation software?

thanks!

Chris Pawlowicz, B.Eng
Manager, Lab Development
UBM TechInsights
3000 Solandt Rd Ottawa ON Canada K2K 2X2
T: +1 613 576 0150
F: +1 613 599 6501
E: cpawlowicz-at-ubmtechinsights.com


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From: vray-at-partbeamsystech.com
Date: Tue, 22 Mar 2011 14:59:27 -0500
Subject: [Microscopy] Re: SEM - Need help troubleshooting a Hitachi S-650

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Kyle,

It looks like something went wrong with Y deflection electronics.

Considering age of the instrument, you may need to get help from one of
those old-timers who still remembers how to do component-level repair.

Good luck!

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 3/22/2011 1:59 PM, kyle.colavito-at-gmail.com wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi,
}
} There is an old SEM (Hitachi s-650) in the lab that I work in and it has
} worked fine for a number of years. Upon turning it on a couple of months
} ago the displays weren't working correctly.
}
} In normal operation the scan line starts at the bottom of the screen, but
} now there is a line across the middle of each the screen where the vertical
} scan starts. When you push the waveform button the line scan is present at
} the middle of the screen rather than the bottom. It does not react to a
} increase in current. From the gauge you can tell that the current is
} increasing across the filament and upon inspection the filament is not
} ruined.
}
} Under normal scanning it scans down from the line in screen 1 to the bottom
} and then from the top of screen 2 down to the line.
}
} Screen 1
} ______________
} | |
} | |
} | |
} |------------------------|
} | |
} | |
} |______________|
}
} Screen 2
} ______________
} | |
} | |
} |------------------------|
} | |
} | |
} | |
} |______________|
}
}
} I believe that it is an electronics issue based on the behavior and as the
} machine is not exactly new, one of the boards could have gone bad. If
} anyone has any suggestion I would greatly appreciate it.
}
} Thanks for your time,
}
} Kyle
}
} Kyle Colavito
} Mechanical Engineering
} University of Arizona
} Work (520) 626-5225
} Lab (520) 621-6092
} Cell (520)250-8409
} kcolavit-at-u.arizona.edu
} kyle.colavito-at-gmail.com
}
}
} ==============================Original Headers==============================
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} 12, 33 -- Subject: SEM - Need help troubleshooting a Hitachi S-650
} 12, 33 -- From: kyle colavito {kyle.colavito-at-gmail.com}
} 12, 33 -- To: microscopy {microscopy-at-microscopy.com}
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From: giselle.walker-at-anatomy.otago.ac.nz
Date: Tue, 22 Mar 2011 16:13:23 -0500
Subject: [Microscopy] SEM: Cambridge Instruments Stereoscan 360 - service manual

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone have a service manual for the S360, and would they be willing to relinquish it long enough for me to get a copy somehow? We already have the operator manual and circuit diagrams, but would actually like to know precisely how twiddling a knob changes what we see on the screen.

thanks

Giselle

--
Dr Giselle Walker
Microscopy Otago - Electron Microscopy
Department of Anatomy & Structural Biology
University of Otago
P.O. Box 913, Dunedin 9054
New Zealand

Phone: +64 (0)3 479 7301, +64 (0)210 403 669
Email: giselle.walker-at-anatomy.otago.ac.nz






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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 22 Mar 2011 20:41:09 -0500
Subject: [Microscopy] viaWWW:looking for a second-hand 2 photon upright microscope

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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://microscopy.com/MLFormMail.html
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Email: michael.cammer-at-med.nyu.edu Name: Michael Cammer

Organization: nyu

Title-Subject: [Filtered] looking for a second-hand 2 photon upright
microscope

Message: We have a colleague who is looking for a second-hand 2 photon
upright microscope. Any information including reputable websites that
sell used microscopes greatly appreciated; please contact offline.
Thank you!

________________________________________________________
Michael Cammer, Assistant Research Scientist Skirball Institute of
Biomolecular Medicine
Lab: (212) 263-3208 Cell: (914) 309-3270




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From: patpxs-at-gmail.com
Date: Wed, 23 Mar 2011 06:07:56 -0500
Subject: [Microscopy] Darkroom Items Free, You Pay Shipping

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Good Morning Listers,

We have closed our darkrooms and are giving these away:

Durst Laborator 138S enlarger with all the lenses. It is attached to
a drop down table.

Ted Pella Nitrogen Burst Film Developing system.

Safe Lights, we have quite a few. The big ones, with the hinged lids.

3 Stainless steel containers to store EM film under vacuum. These are
currently set up in series (all 3 attached to each other).

You must pay shipping and you must take it ASAP.

First come, first served, etc..

Contact me for more information.

Paula

--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#251M, Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.3452


==============================Original Headers==============================
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From: nizets2-at-yahoo.com
Date: Wed, 23 Mar 2011 09:34:28 -0500
Subject: [Microscopy] Bacterial flagella & pili study

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Although negative staining is definitively a valuable solution, another elegant
technique which gives very nice contrast for such thin structures is shadow
casting. Manipulation, as already stated, must be kept minimal and this is also
a reason why shadow casting works well.
Just google for "flagella/flagellum shadow casting".
Have fun as well as success.

Stephane


----- Original Message ----
X-from: "oshel1pe-at-cmich.edu" {oshel1pe-at-cmich.edu}
To: nizets2-at-yahoo.com
Sent: Mon, March 21, 2011 1:14:18 PM

} Date: Sat, 19 Mar 2011 01:34:03 -0700
} From: Benjamin Brezler {benjamin.brezler-at-gmail.com}
}
} Below is the result of your form, submitted on Saturday, March 19,
} 2011 at 01:33:49 AM.
}
} realname - Benjamin Brezler
} Email - benjamin.brezler-at-gmail.com
} ORGANIZATION - San Francisco State University (SFSU)
} EDUCATION - Graduate College
} LOCATION - San Francisco, CA, USA
} SUBJECT_OF_QUESTION - Staining Microbial Samples for SEM
} QUESTION - Dear MSA,
} I am a Master's student at SFSU, and my project involves working
} with flagellated Gram-negative bacteria. I am trying to compare the
} quality and number of flagella in wild-type and mutant strains of
} these bacteria. The project has been quite challenging, and I am
} hoping to get some advice that will help me stain and image flagella
} and pili. I have reviewed several books (by Hayat, Goldstein, and
} Bazzola) and several research articles. However, I can't  seem to
} find a protocol to work with.
}
} Any advice, suggestions, references, or contacts would be greatly appreciated.
}
} Thank you,
} Benjamin Brezler
}
} PS: I have been fixing with glutaraldehyde in sodium cacodylate,
} dehydrating with an ethanol series, and then trying various
} different stains (phosphotungstic acid, uranyl acetate, and osmium
} tetroxide), but I'm not sure if I'm using them properly (i.e. at the
} right concentrations, pH, staining for long enough, etc.).
}
--
***************************************************************************************

Forwarded from "Ask a Microscopist"
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16, 37 -- From: Stephane Nizet {nizets2-at-yahoo.com}
16, 37 -- Subject: Re: [Microscopy] Bacterial flagella & pili study
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From: dcalvert-at-eastman.com
Date: Wed, 23 Mar 2011 14:16:46 -0500
Subject: [Microscopy] AFM - Third party repair services

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Can anyone recommend an independent / third party with expertise in AFM repair / system optimization?

Dave Calvert
Eastman Chemical Co.
P.O. Box 1974
Kingsport, Tennessee 37662
Office: 423-229-4943
Cell: 423-963-8966
Fax: 423-224-7550





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From: kyle.colavito-at-gmail.com
Date: Wed, 23 Mar 2011 14:41:00 -0500
Subject: [Microscopy] SEM - Schematics needed for Hitachi s-650 or similiar model

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I've made some progress into figuring out the problem with my machine,
but am having a hard time without any schematics. If anyone has a
copy that would be greatly appreciated.

Thanks,
Kyle

Kyle Colavito
Mechanical Engineering
University of Arizona
Work (520) 626-5225
Lab (520) 621-6092
Cell (520)250-8409
kcolavit-at-u.arizona.edu
kyle.colavito-at-gmail.com

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3, 30 -- Subject: SEM - Schematics needed for Hitachi s-650 or similiar model
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From: jkrupp-at-deltacollege.edu
Date: Wed, 23 Mar 2011 16:59:16 -0500
Subject: [Microscopy] Target distance?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Got a new sputter coater. Need help determining the sample to target distance. Instructions don't have a recommendation, just a note that says the specimen height is adjustable. Any advice?

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: protrain-at-emcourses.com
Date: Wed, 23 Mar 2011 17:14:48 -0500
Subject: [Microscopy] Target distance?

Contents Retrieved from Microscopy Listserver Archives
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Hi

A generic guide to setting the specimen position in a sputter coater is 5cms
target to specimen surface. This means you are in the plasma but not too
close to the target.

Enjoy

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
Sent: 23 March 2011 22:00
To: protrain-at-emcourses.com

Got a new sputter coater. Need help determining the sample to target
distance. Instructions don't have a recommendation, just a note that says
the specimen height is adjustable. Any advice?

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: speransv-at-mail.nih.gov
Date: Wed, 23 Mar 2011 19:24:39 -0500
Subject: [Microscopy] TEM embedding: human lung biopsy?..

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Colleagues, friends,

I'm seeking response from those who's got some experience with the human lung biopsy - any tips, warnings? pitfalls?..
I am quite familiar with TEM embedding in general and also aware about Google and Pubmed... I don't send others there, please don't post just to send me there.

Need to process for standard thin section TEM a lung biopsy that has been stored in the fridge for a year and a half, yes in the original fixative - 1.5%GA+1.5%FA, presumably in PB. The lung, luckily for that person, got replaced by a transplant and is a severe case of certain fibrosis (no asbestos or other "mineral" stuff expected").
The pieces are *huge* - 2 dimensions 10 mm, the 3rd 5 mm tapering off to where the lung ends.
So - any advice before I start?
Will it be hard to infiltrate?... need more than 1% OsO4?.. things like that...

Thanks!
Vlad

________________________________________________
Vlad Speransky, Staff Scientist
Biomedical Engineering and Physical Science Shared Resource
National Institute of Biomedical Imaging and Bioengineering, NIH
13 South Dr, Rm. 3N17 MSC 5766
Bethesda, MD 20892
301 496-3989
vladislav_speransky-at-nih.gov
http://www.nibib.nih.gov/Research/Intramural/SharedResource/Speransky

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 23 Mar 2011 20:22:37 -0500
Subject: [Microscopy] viaWWW:Dualbeam FIB analyst needed

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Title-Subject: [Filtered] Dualbeam FIB analyst needed

Message: Western Digital Media, San Jose, CA: Six month contract
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From: nizets2-at-yahoo.com
Date: Thu, 24 Mar 2011 08:07:16 -0500
Subject: [Microscopy] question to geologists/mineralogists

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Hi Jon

For your information we teach the following procedure for setting up a
sputter coater. Each test, other than the first, uses a piece of normal
copy paper cut down to about 2ins X 3ins to simulate the outgassing that
would be typical of a specimen

1. Using a piece of paper that covers the stage area, run the coater
for several minutes at 20mA. Hold the paper down with a stub placed at the
centre. The coat will demonstrate the coverage of the plasma and pick out
areas that are well coated or not so well coated. The coating should be
pretty perfect with a new coater but patchy with a coater that has a
contaminated target. If there are areas with less of a coat you need to map
your stage for selecting the best position for superior coating in the
future?
2. Place a test paper on the stage held down by a stub. The next step
depends upon the voltage of the coater (a) using a low voltage coater (400v
to 600v) set the current at 10mA and coat for 30 seconds. (b) with a high
voltage coater(} 800v) set the current at 20mA and run for 30 seconds. Note
the current and time on the back of the test paper.
3. Repeat the experiment in steps of 30 seconds until the paper starts
to exhibit a very slight gold sheen. Note the information on the back of
each picture.
4. Select the condition for higher magnification work that shows the
first grey colouration.
5. Low magnification operation will probably require the procedure set
out in 3.

Sputter coating is often treated as a no brainer, but as those attending our
course in Missouri later in the year will see, we dedicate an hour to
correctly judge and set up a sputter coater for the first time. It is that
important if you wish to obtain information that is not influenced by the
coating; just as is the selection of the correct coating material.

For top class SEM results I prefer to use the full facility of the SEM,
balancing specimen position, kV and probe current rather than coating.
However sometimes you just have to fall back on that route, particularly for
novice operators where it is so much easier to slap on a coat to keep life
simple.

Enjoy your new coater!

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: Jon Krupp [mailto:jkrupp-at-deltacollege.edu]
Sent: 23 March 2011 22:48
To: protrain-at-emcourses.com

Dear all!

My question is not directly related to microscopy but it comes from the
observation of a classical methodology used for the preparation of carbon film
for EM. I also know that a significant part of the list is made of mineralogists
and I think they would be the right persons to answer this question.

Electron microscopists use freshly cleaved mica to prepare carbon films. But why
does it need to be freshly cleaved? What property of mica is modified with time?
Is it the hydration of the surface, or charging?
I would be interested in hearing your comments about the surface modications
which occur with time in freshly cleaved or freshly milled rocks.
I remember I read a paper which showed that freshly fractured quartz produces
more free radicals than aged quartz and I wonder which mechanism can be
responsible for that. How can, for example, the surface charge (or zeta
potential) be modified with time?
Many thanks in advance,

Stephane





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7, 34 -- From: Stephane Nizet {nizets2-at-yahoo.com}
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From: wzhe-at-laurentian.ca
Date: Thu, 24 Mar 2011 11:26:45 -0500
Subject: [Microscopy] EDS counts problem

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Dear Listers,

We had found EDS counts suddenly dropped almost half after a couple of
days no operations of our INCA/Jeol 6400 SEM system. Counts for standard
materials of Ni drops from ~10k to ~5k, and noise (zero) peak goes up
to about 100k compared to normal of 1-3k, we also noticed a significant
“Si peak†at 1.75 KeV in spectrum of pure Ni. Is anybody had this
sort of problem before or has idea what it could be? please advice. We
are trying to do conditioning detector, i.e. de-ice, to see if any
improvement, but still could not explain this sudden counts drop.

Any comments are highly appreciated,

Thanks,

William Zhe
Central Analytical Facility
Laurentian University


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From: cpawlowicz-at-ubmtechinsights.com
Date: Thu, 24 Mar 2011 15:17:12 -0500
Subject: [Microscopy] DIY SEM

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A colleague passed this along to me.. this guy has spent the last couple of months and built a DIY SEM

http://benkrasnow.blogspot.com/2011/03/diy-scanning-electron-microscope.html

Fascinating stuff.. including the comments from others *also* building their own SEMs.. who knew?


Chris Pawlowicz, B.Eng
Manager, Lab Development
UBM TechInsights
3000 Solandt Rd Ottawa ON Canada K2K 2X2
T: +1 613 576 0150
F: +1 613 599 6501
E: cpawlowicz-at-ubmtechinsights.com


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From: protrain-at-emcourses.com
Date: Thu, 24 Mar 2011 16:59:13 -0500
Subject: [Microscopy] EDS counts problem

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Hi

Strange actions like this should always be approached in the first case as a computer problem, reboot, then secondly by carrying out a complete recalibration. Your Oxford system may be totally revitalised through a complete recalibration so give that a try? Internal TV systems may also mess up a spectrum, always turn them off when carrying out an analysis.

Hope this helps?

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com




-----Original Message-----
X-from: wzhe-at-laurentian.ca [mailto:wzhe-at-laurentian.ca]
Sent: 24 March 2011 16:29
To: protrain-at-emcourses.com

Dear Listers,

We had found EDS counts suddenly dropped almost half after a couple of
days no operations of our INCA/Jeol 6400 SEM system. Counts for standard
materials of Ni drops from ~10k to ~5k, and noise (zero) peak goes up
to about 100k compared to normal of 1-3k, we also noticed a significant
“Si peak†at 1.75 KeV in spectrum of pure Ni. Is anybody had this
sort of problem before or has idea what it could be? please advice. We
are trying to do conditioning detector, i.e. de-ice, to see if any
improvement, but still could not explain this sudden counts drop.

Any comments are highly appreciated,

Thanks,

William Zhe
Central Analytical Facility
Laurentian University


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From: woody-at-albe24.com
Date: Thu, 24 Mar 2011 19:00:40 -0500
Subject: [Microscopy] SIGMA Users?

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Hello All,

I am looking for other users of Zeiss SIGMAs.
Anyone out there?

Regards,
Woody

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 25 Mar 2011 07:00:52 -0500
Subject: [Microscopy] viaWWW:pneumatic shutter on Link ISIS EDS detector

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This Question/Comment was submitted to the Microscopy Listserver
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Email: tomw-at-uidaho.edu Name: Tom Williams

Organization: University of Idaho

Title-Subject: [Filtered] pneumatic shutter on Link ISIS EDS detector

Message: Good day all.

Question for any user currently operating a Link ISIS EDS w/pneumatic
shutter.

I have an older Link ISIS detector (late 90s vintage) on a JEOL 2010 TEM
that we are attempting to revive (no use for 2+ yrs). Electronics box
and computer+software are apparently okay (running on a museum caliber
Windows 98 machine-gotta love it).
My problem (first of many I'm sure): the pneumatic shutter on the
detector. When I attempt to open the shutter I get a "SHUTTER FAIL"
error. I can hear the shutter move and the compressed airline is
pressurized. I can move the shutter manually by physically reversing
the airlines. I have not attempted to remove access plates as I have no
idea what part of the shutter box system is under vacuum. Manual is not
helpful. No schematics.
If anyone has experience with Link ISIS systems, and might have a
suggestion or idea, I would be grateful if you would pass it along.
Thanks,

Tom

Thomas Williams
Director,
Electron Microscopy Center
University of Idaho
Moscow, ID

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From: William.F.Tivol-at-aero.org
Date: Fri, 25 Mar 2011 14:20:02 -0500
Subject: [Microscopy] TEM of CdHgTe2

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear list,
Has anyone had experience looking at CdHgTe2 on a TEM? I expect
that using a cryo stage would be the best way to inhibit contamination of
the scope from the volatile components. Is this the case, and are there
other methods that would allow this compound to be imaged without damage
to the scope?
Yours,
Bill

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From: kenconverse-at-qualityimages.biz
Date: Fri, 25 Mar 2011 15:39:43 -0500
Subject: [Microscopy] TEM of CdHgTe2

Contents Retrieved from Microscopy Listserver Archives
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Hi Bill,
I'm not familiar with the compound, but have heard wonderful (terrible?)
stories about what can happen to a high voltage power supply when Hg becomes
Hg vapor and rather conductive. I would think that if the Hg is tightly
bound chemically, then it shouldn't be an issue, but if you have any doubts,
I think cryo might be a good bet, or at least a hedge. The biggest problem
seems to be its migration after being vaporized. If you don't get rid of
all of it, you'll blow up your HVPS again.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org]
Sent: Friday, March 25, 2011 3:24 PM
To: kenconverse-at-qualityimages.biz

Dear list,
Has anyone had experience looking at CdHgTe2 on a TEM? I expect
that using a cryo stage would be the best way to inhibit contamination of
the scope from the volatile components. Is this the case, and are there
other methods that would allow this compound to be imaged without damage
to the scope?
Yours,
Bill

==============================Original Headers==============================
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2011
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==============================Original Headers==============================
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From: John.Mardinly-at-asu.edu
Date: Fri, 25 Mar 2011 17:47:10 -0500
Subject: [Microscopy] TEM of CdHgTe2

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I would like to very sincerely thank everyone who has responded. I really got more help than I was expecting.
While not quite state-of-the-art EM, this is a really meaningful project for me, and I appreciate your input.

Have a great weekend everyone,
Vlad

________________________________________
X-from: Speransky, Vlad (NIH/NIBIB) [E]
Sent: Wednesday, March 23, 2011 8:24 PM
To: microscopy-at-microscopy.com

Bill;
Your big problem will be making specimens that do not have point
defects galore all over the surface. I believe Tony Cullis did a lot of
CdHgTe2 work back in the 80's, and that was one of the motivators to
develop iodine milling. I don't recall any problems with the compound
volatilizing.

A. John Mardinly,
ASU

-----Original Message-----
X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org]
Sent: Friday, March 25, 2011 12:33 PM
To: John Mardinly

Dear list,
Has anyone had experience looking at CdHgTe2 on a TEM? I expect

that using a cryo stage would be the best way to inhibit contamination
of
the scope from the volatile components. Is this the case, and are there

other methods that would allow this compound to be imaged without damage

to the scope?
Yours,
Bill

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From: William.F.Tivol-at-aero.org
Date: Fri, 25 Mar 2011 18:00:38 -0500
Subject: [Microscopy] Thanks for all the help

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Dear list,
Thank you to all who replied with comments on the HgCdTe imaging.
The list has once again proved its worth--not that there was any doubt.
Yours,
Bill

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 25 Mar 2011 18:58:45 -0500
Subject: [Microscopy] viaWWW:SEM/EDS - Thank you - Table Top versus Research Grade

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Message: Hello to all,

I want to thank everyone who responded to my request for insights and
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From: jbpawley-at-wisc.edu
Date: Fri, 25 Mar 2011 22:31:28 -0500
Subject: [Microscopy] RE: TEM of CdHgTe2

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Hi all,

Before we have too much panic, it might help to remember that for
many years, JEOL used a mercury diffusion pump in their tandem
pumping system for their best 100 and 200 keV TEMs. Such devices
intentionally produce massive amounts of mercury vapor.

Old guy comment.

Jim Pawley

***************************************************************************
Prof. James B. Pawley, Ph.
608-238-3953
21. N. Prospect Ave. Madison, WI 53726 USA
JBPAWLEY-at-WISC.EDU
3D Microscopy of Living Cells Course, June 11-23, 2011, UBC, Vancouver Canada
Info: http://www.3dcourse.ubc.ca/ Applications due by March 15, 2011
"If it ain't diffraction, it must be statistics." Anon.

--
***************************************************************************
Prof. James B. Pawley, Ph.
608-238-3953
21. N. Prospect Ave. Madison, WI 53726 USA
JBPAWLEY-at-WISC.EDU
3D Microscopy of Living Cells Course, June 11-23, 2011, UBC, Vancouver Canada
Info: http://www.3dcourse.ubc.ca/ Applications due by March 15, 2011
"If it ain't diffraction, it must be statistics." Anon.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 26 Mar 2011 07:55:55 -0500
Subject: [Microscopy] viaWWW:TEM JEOL 200OFX

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From: kayton-at-ohsu.edu
Date: Sat, 26 Mar 2011 18:39:08 -0500
Subject: [Microscopy] Help with Kidney Bx

Contents Retrieved from Microscopy Listserver Archives
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Hi all,

I work on primarily renal biopsies for the university hospital. I have been asked to investigate, any and all techniques, to get better definition of the immune deposits that we find in the basement membrane of the glomerulus. We use a fairly standard protocol:

Fix in a 1.5% Para and 1.5% glut in a cacodylate buffer.

Post fix in OsO4
dehydrate in Acetone
embed in LX-112, an epoxy plastic

Stain the thin sections with UA and Pb citrate.

We do still have the occasional very electron dense deposits in a few of our cases. But the majority are much less evident, although well defined in the fluorescent images.

Any suggestions, protocols or shared experience will be appreciated.

Robert Kayton

Oregon Health & Science University
Portland, Oregon



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From: nizets2-at-yahoo.com
Date: Mon, 28 Mar 2011 04:17:54 -0500
Subject: [Microscopy] RE: TEM of CdHgTe2

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Massive amount of Hg vapour in the room?



----- Original Message ----
X-from: "jbpawley-at-wisc.edu" {jbpawley-at-wisc.edu}
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Sent: Sat, March 26, 2011 4:36:26 AM

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Hi all,

Before we have too  much panic, it might help to remember that for
many years, JEOL used a mercury diffusion pump in their tandem
pumping system for their best 100 and 200 keV TEMs. Such devices
intentionally produce massive amounts of mercury vapor.

Old guy comment.

Jim Pawley

***************************************************************************
Prof. James B. Pawley,                                  Ph.
608-238-3953                           
21. N. Prospect Ave. Madison, WI 53726 USA
JBPAWLEY-at-WISC.EDU
3D Microscopy of Living Cells Course, June 11-23, 2011, UBC, Vancouver Canada
Info: http://www.3dcourse.ubc.ca/        Applications due by March 15, 2011
          "If it ain't diffraction, it must be statistics." Anon.

--
***************************************************************************
Prof. James B. Pawley,                                  Ph.
608-238-3953                           
21. N. Prospect Ave. Madison, WI 53726 USA
JBPAWLEY-at-WISC.EDU
3D Microscopy of Living Cells Course, June 11-23, 2011, UBC, Vancouver Canada
Info: http://www.3dcourse.ubc.ca/        Applications due by March 15, 2011
          "If it ain't diffraction, it must be statistics." Anon.

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From: one_twinklestar-at-yahoo.com.sg
Date: Mon, 28 Mar 2011 12:25:08 -0500
Subject: [Microscopy] Carbon Rod used in Carbon Evaporator

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All, our lab has a JEOL Vacuum Evaporator JEE-400 all a long but its not frequently used. Recently i am trying to make use of this evaporator to establish a consistent carbon coating of certain thickness. Unfortunately there are no expertise in our lab and i would to ask for some advice particularly on the sharpness of the carbon rod. Below is my question:

How sharp must the carbon rod be for the contact? The JEOL manual illustrate a needle sharp tip but the JEOL carbon sharpener seem only able to thin the rod to a diameter of about 1mm. Would that actually means that after using the JEOL carbon sharpener, i should find other ways to create a sharp tip?

I appreciate very much for your kind advice!

Best Regards,
Yee Yan, Tay
NTU, Singapore


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5, 27 -- From: Tay Yee Yan {one_twinklestar-at-yahoo.com.sg}
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From: I.J.Portman-at-warwick.ac.uk
Date: Tue, 29 Mar 2011 02:32:39 -0500
Subject: [Microscopy] RE: Carbon Rod used in Carbon Evaporator

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



My own experience with a Cressington evaporator is that too fine a tip
leads to unreliable evaporation - I spent a good deal of time getting
the tip pencil sharp only to discover that it would spark up briefly
then break before sufficient carbon had evaporated. A 1mm works well, I
get control of the thickness by donning a pair of welding goggles and
watching the arc light up, for general purpose grids I allow about a 2
second pulse from the point at which the arc reaches maximum brightness.

Cheers
Ian

Ian Portman
Imaging Suite Manager
School of Life Sciences
University of Warwick

http://www2.warwick.ac.uk/fac/sci/lifesci/facilities/imaging


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The Microscopy ListServer -- CoSponsor: The Microscopy Society of
America

Dear All, our lab has a JEOL Vacuum Evaporator JEE-400 all a long but
its not frequently used. Recently i am trying to make use of this
evaporator to establish a consistent carbon coating of certain
thickness. Unfortunately there are no expertise in our lab and i would
to ask for some advice particularly on the sharpness of the carbon rod.
Below is my question:

How sharp must the carbon rod be for the contact? The JEOL manual
illustrate a needle sharp tip but the JEOL carbon sharpener seem only
able to thin the rod to a diameter of about 1mm. Would that actually
means that after using the JEOL carbon sharpener, i should find other
ways to create a sharp tip?

I appreciate very much for your kind advice!

Best Regards,
Yee Yan, Tay
NTU, Singapore




==============================Original Headers==============================
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From: Josef.Zweck-at-physik.uni-regensburg.de
Date: Tue, 29 Mar 2011 03:21:05 -0500
Subject: [Microscopy] RE: Carbon Rod used in Carbon Evaporator

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We used to form two wedges by moving the rod across a grinding paper. The wedge angle was approx. 30-45 degrees. We also had a rotation vacuum transfer rod, which allowed us to press one wedge against the other (stationary) one.

Joe



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From: one_twinklestar-at-yahoo.com.sg
Date: Tue, 29 Mar 2011 08:11:06 -0500
Subject: [Microscopy] Carbon Rod used in Carbon Evaporator

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All, thank you so much for your valuable suggestion. Reading through your suggestions, it gives me a lot of idea what i can do with my carbon evaporator as well as refining the technique to give a fine controlled coating!!!

Thanks everyone!!

Cheers,
Yee Yan, Tay
NTU

--- On Tue, 29/3/11, Josef.Zweck-at-physik.uni-regensburg.de {Josef.Zweck-at-physik.uni-regensburg.de} wrote:

} From: Josef.Zweck-at-physik.uni-regensburg.de {Josef.Zweck-at-physik.uni-regensburg.de}
} Subject: [Microscopy] RE: Carbon Rod used in Carbon Evaporator
} To: one_twinklestar-at-yahoo.com.sg
} Date: Tuesday, 29 March, 2011, 4:22 PM
}
}
}
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} We used to form two wedges by moving the rod across a
} grinding paper. The wedge angle was approx. 30-45 degrees.
} We also had a rotation vacuum transfer rod, which allowed us
} to press one wedge against the other (stationary) one.
}
} Joe
}
}
}
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From: protrain-at-emcourses.com
Date: Tue, 29 Mar 2011 12:42:59 -0500
Subject: [Microscopy] Carbon Rod used in Carbon Evaporator

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

The ideal carbon rod combination is a spigot and a flat which is exactly
what your JEOL sharpener is providing for you. The spigot system is better
than a point system as it provides a possibility of prolonged coating due to
the constant surface area of the contact point. A point system very soon
erodes to a surface area that is too large for the evaporation to continue

Set the spigot to strike a flat surface with the sprung pressure being
applied to the spigot rod. Remember the quality of a carbon coat is
directly related to the vacuum level when setting up the system; give it
time!

Good luck!

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com


-----Original Message-----
X-from: one_twinklestar-at-yahoo.com.sg [mailto:one_twinklestar-at-yahoo.com.sg]
Sent: 28 March 2011 18:26
To: protrain-at-emcourses.com

Dear All, our lab has a JEOL Vacuum Evaporator JEE-400 all a long but its
not frequently used. Recently i am trying to make use of this evaporator to
establish a consistent carbon coating of certain thickness. Unfortunately
there are no expertise in our lab and i would to ask for some advice
particularly on the sharpness of the carbon rod. Below is my question:

How sharp must the carbon rod be for the contact? The JEOL manual illustrate
a needle sharp tip but the JEOL carbon sharpener seem only able to thin the
rod to a diameter of about 1mm. Would that actually means that after using
the JEOL carbon sharpener, i should find other ways to create a sharp tip?

I appreciate very much for your kind advice!

Best Regards,
Yee Yan, Tay
NTU, Singapore


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 29 Mar 2011 20:25:11 -0500
Subject: [Microscopy] viaWWW:Job Opening - Bio Service Engineer

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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at
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Email: iclements-at-api.com Name: Ian Clements

Organization: Applied Precision Inc

Title-Subject: [Filtered] Job Opening - Bio Service Engineer

Message: Dear Listmembers

We are currently recruiting for an experienced Bio Engineer/Service
Engineer to join our DeltaVision OMX super-resolution microscope support
team. The position of Bio Engineer is part of the Life Sciences Service
Team. Under limited supervision, provides installation, training and
advanced technical and applications support for API end customers and
distributors. For more details follow the link below.

This is the direct link to the job profile.
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If you experience problems using the link you can also access this and
other open positions through our website at
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Ian Clements
Product Manager - DeltaVision OMX Systems


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From: nizets2-at-yahoo.com
Date: Wed, 30 Mar 2011 01:56:48 -0500
Subject: [Microscopy] Advice for IF labeling

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Good day to all!

I have been trying to label the CEA factor in MCF-7 cells in culture by IF
without success.
I can measure CEA in whole cell extracts by ELISA using a kit so its presence is
certain. Unfortunately the company does not sell the antibody used in the kit so
I had to buy another primary antibody from another source (Mab H-8 from Santy
Cruz). The secondary is a brand new antibody so it is not the culprit.
My problem is that by IF I get no specific signal, just low background signal.
It may be that the primary simply doesn't work but before I resign I would like
to ask if someone may had an idea how to reveal the antigen better. I expect the
antigen to be bound to the cell membrane.

Here is my method:
- fixation for 15 min with 4% PFA in 0,1M phosphate buffer
- permeabilization for 5 min (or not, I try both in parallel) with 0,01% triton
x-100/PBS
- blocking 30 min with 1% BSA/PBS
- 1h30 at 37°C with anti-CEA Mab H-8 1/50 in 0,5% BSA/PBS
- 1h30 at 37°C with GAM-alexa 488 1/100 in 0,5% BSA/PBS

Thank you in advance

Stephane



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From: s.h.coetzee-at-gmail.com
Date: Wed, 30 Mar 2011 07:48:13 -0500
Subject: [Microscopy] viaWWW:SEM - Table Top SEM versus Research Grade

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear James
I think all the right things were mention. I love the table top idea
but from your description you will need a low end SEM with SE, BSE and
EDS to handle the samples. A Tungsten filament instrument is getting
relatively cheap and will do the trick, a Carbon coater and Au/Pd
Coater will be needed for sample preparation.

The bit missing is my petty bit, service. Before you consider a sem
just make sure the service in your area is good. The best sem is the
one that is running all the time and that often depends on the service
department of the representer in your area. We have a Philips XL30
ESEM and they do not produce them anymore but our downtime is
virtually none. A combination of a good microscope and good service
on a regular bases.

Regards
Stephan H Coetzee
EM Scientist
University of Botswana


On Thu, Mar 17, 2011 at 3:25 PM, {cpawlowicz-at-ubmtechinsights.com} wrote:
}
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}
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} James,
}
} We have a busy lab with a number of microscopes (optical, SEM, TEM etc). While most of our SEMs are full size systems (Zeiss, JEOL), some with EDS, we also have a tabletop Hitachi TM1000 SEM. I also recently had a TM3000 with EDS in as a demo unit to try out and compare. (it's handy to have a small fast SEM right in the lab area).
}
} Most of our work is semiconductor based.
}
} First off, we are impressed with the TM1000 (and even more impressed with the TM3000) in how quickly and easily it can be used to get great images (albeit limited in mag). It definitely has limited controls (compared to a full size system) but you can learn how to use it in about 30 seconds. It is much harder for people to screw it up also! The EDS was quick and intuitive to learn how to use and had fast mapping capabilities. EDS capability was similar to what we have on our full size SEM (by no means 'dumbed down').
}
} Pros:
} Fast, easy to use (for trained and non-trained people alike).
} Excellent quality images.
} Various 'high pressure' modes meaning you often don't need to coat.
} No special services required (water, special power, air -plug it in to standard outlet!) and small size (really is table-top).
} Easy to exchange filaments
}
} Cons:
} Limited magnification
} BSE detector only (no SE)
} Limited beam voltages (have choice of a few fixed steps)
} Small stage
}
} Pricing was a bit hard to pin down.. base SEM was ~$80k, add another ~$75k for EDS. Other options like motorized stage are available. We were looking at the demo unit (year end sale) and price was about 25% discount.
}
} I have seen TM1000s on the used market for ~$10k or less with no EDS.
}
} Definitely 'try before you buy' - and one thing I'm still not sure about is the stated 'magnification'.
} We have our SEMS mostly set to use Polaroid output as the reference for mag but I'm not sure what Hitachi uses. To get the same image, 10,000x on the Hitachi = 3,000x on our Zeiss and JEOL.. confusing!
}
} Finally, our TM1000 has been very reliable except for the turbo.. it only lasted a year or so before making bad noises. Hitachi replaced it no problems but I don't know if this is a problem area or not. The TM3000 uses a new turbo.
}
} Chris Pawlowicz, B.Eng
} Manager, Lab Development
} UBM TechInsights
} 3000 Solandt Rd Ottawa ON Canada K2K 2X2
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} Email: james.m.hoffmann-at-usa.dupont.com Name: Jim Hoffmann
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} Title-Subject: [Filtered] SEM -  Table Top SEM versus Research Grade SEM
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} Message: Hello Listserver Folks,
}
} I am seeking your advice and experience.  I am an Optical Microscopist working at a manufacturing site in a busy microscopy lab.  The type of samples that I see cover a wide range including: failure analysis, customer support, small particle identification, R&D support, manufacturing issues, materials analysis, defect identification, root cause troubleshooting, Quality Control, polymers, organics, inorganics, etc... Besides Optical microscopy I also use Micro FTIR spectroscopy. I would like to add an SEM to my lab primarily so that I can get EDS elemental information to complement the FTIR information. The increased magnification and depth of field beyond optical microscopy would be an added bonus but not the critical need. I usually don't need over 1000x, but occasionally I need to go to 10,000 - 20,000x. For this I send samples out for SEM.
} I was wondering if any of you folks have insights or experience with desk-top SEM's such as EVEX Mini-SEM, Aspex Express/Explorer, or Hitachi TM3000 ?  Since I am not a trained SEM microscopist, I am thinking that the table-top models would be just right for me ... easier to operate with less training ... easier maintenance ... no sputter coating
} required ...   What would I be giving up in terms of EDS capability and
} Imaging capability? Also, since I am at a manufacturing facility, funds are tight in my lab. I am thinking I may need to go with a "previously owned" instrument... I am not sure how much I have to spend at this point ....
}
} Thank
}
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} 23, 27 -- From cpawlowicz-at-ubmtechinsights.com Thu Mar 17 08:18:02 2011
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} 23, 27 -- Subject: RE: [Microscopy] viaWWW:SEM - Table Top SEM versus Research Grade
} 23, 27 --  SEM
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--
Stephan H Coetzee
EM Scientist
Electron Microscope Unit
University of Botswana


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From: PhillipsT-at-missouri.edu
Date: Wed, 30 Mar 2011 08:00:14 -0500
Subject: [Microscopy] Advice for IF labeling

Contents Retrieved from Microscopy Listserver Archives
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It you are looking for surface expressed CEA, there is no need to permeabilize. Even if you want both surface and internal CEA, try it without permeabilization one time to see if that helps. If you suspect the epitope is being masked by formaldehyde fixation, you could try an acetone fixation to see if it survives that. The morphology isn't as good but it getting to a positive starting point is a good first step. 90 min for primary incubation is short. We routinely do overnight. For some antibodies this is overkill and can increase background but our experience is that it often helps and less often hurts. Once again, getting a positive starting point is a good first step. We routinely use an antigen retrieval step with our paraffin and resin embedded sections - usually 10-20 min in 100 mM glycine (pH 9.6) at 95 C and see a dramatic increase in success rate. Having a new secondary is not a guarantee of success. If you buy a highly cross-reacted secondary (e.g., goat anti-mouse cross-absorbed against rat, rabbit, human, donkey, guinea pig), you might reduce the binding so some subclasses of mouse immunoglobulins (e.g., IgG2a). Is your monoclonal an IgG or IgM? IgM antibodies are less desirable for immunocytochemistry, especially internal epitopes, since they are so much larger. You don't list a concentration of monoclonal. 1 ug/ml is usually best but many take 10 ug/ml to give a strong signal. But obviously monoclonals are to single epitopes and therefore different ones will have different success rates so it isn't shocking the ELISA monoclonal works and this one doesn't. I strongly suspect there are polyclonals to CEA available so I would consider going that route. Good luck. Tom


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Wednesday, March 30, 2011 1:58 AM
To: Phillips, Thomas E.

Good day to all!

I have been trying to label the CEA factor in MCF-7 cells in culture by IF
without success.
I can measure CEA in whole cell extracts by ELISA using a kit so its presence is
certain. Unfortunately the company does not sell the antibody used in the kit so
I had to buy another primary antibody from another source (Mab H-8 from Santy
Cruz). The secondary is a brand new antibody so it is not the culprit.
My problem is that by IF I get no specific signal, just low background signal.
It may be that the primary simply doesn't work but before I resign I would like
to ask if someone may had an idea how to reveal the antigen better. I expect the
antigen to be bound to the cell membrane.

Here is my method:
- fixation for 15 min with 4% PFA in 0,1M phosphate buffer
- permeabilization for 5 min (or not, I try both in parallel) with 0,01% triton
x-100/PBS
- blocking 30 min with 1% BSA/PBS
- 1h30 at 37°C with anti-CEA Mab H-8 1/50 in 0,5% BSA/PBS
- 1h30 at 37°C with GAM-alexa 488 1/100 in 0,5% BSA/PBS

Thank you in advance

Stephane



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 30 Mar 2011 08:00:33 -0500
Subject: [Microscopy] viaWWW:Thanks for the help-Oxford EDS system

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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: tomw-at-uidaho.edu Name: Tom Williams

Organization: University of Idaho

Title-Subject: [Filtered] Thanks for the help.

Message: I wanted to thank all the Listserv members for their help with
my Oxford EDS system. Seems that the shutter is opening and closing but
the system is having problems recognizing this. Once in the OPEN
position, I just left it alone, checked the detector on a sample.
Detector works fine. Good count rate and good calibration. Happy times
in the TEM lab. I plan to leave the shutter open for now. As I told a
student-it may die in a week, but it will die happy.

Big thanks for the help!

Tom


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From: jarnikm-at-mail.nih.gov
Date: Wed, 30 Mar 2011 08:27:05 -0500
Subject: [Microscopy] Anti-HA and anti-myc tag antibodies for immunogold

Contents Retrieved from Microscopy Listserver Archives
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Dear list,

I need good antibodies (from different species, mouse and rabbit preferentially) against these two tags that would work for immunogold labeling on Tokuyasu cryosections. I think 6% formaldehyde, 4% formaldehyde/0.1% glutaraldehyde or 2% formaldehyde/0.2% glutaraldehyde would be the fixations I would try for the starters. Any recommendations?

Also, recommendations needed on suppliers of gold conjugates. For the last couple of years I was only using protein A from a single source that does not offer antibodies, so I do not have current information.

Thanks,

Michal

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From: Frank_Karl-at-lincolnelectric.com
Date: Wed, 30 Mar 2011 09:41:24 -0500
Subject: [Microscopy] position to fill

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Lincoln Electric has a position open for a metallographer. The microscopy
lab has the typical equipment needed for metallography in a production
setting: SEM, stereomicroscope, reflected light, microhardness, grinding
and polishing wheels. The add talks about engineers, but that because
Lincoln Electric ( the welding company) always ask for engineers but we
need a metallographer. Here's the truncated add:

The Engineer - Mechanical Lab has the following responsibilities:
Work in the Mechanical and/or Microscopy Laboratory analyzing and
characterizing chemicals, metals, and weld deposits using routine and
non-routine procedures of substantial variety and complexity.


Requirements
Minimum four-year engineering degree required. Metallurgical, Materials,
or Mechanical Engineering degree is required. Specialty in welding is
desirable.
3 – 5 years of professional experience preferred.
Experience with mechanical testing equipment and specifications is
required.
Familiarity with NDT techniques and microscopy is desirable.
Knowledge of basic statistical methods is required. Knowledge of Six Sigma
methodologies is desirable.


Contact:
Yonatan Necoechea
Manager, Specials & Testing Services
The Lincoln Electric Company
Office: 216.383.5439
22801 St. Clair Ave. | Cleveland, OH | 44117
--
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dissemination, distribution or copying of this communication
is strictly prohibited. If you have received this
communication in error, please notify us immediately by
replying to the message and deleting it from your computer.
Thank you,
The Lincoln Electric Company
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From: DOrloff-at-ascb.org
Date: Wed, 30 Mar 2011 10:01:40 -0500
Subject: [Microscopy] Position part time to full time

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The Cell: An Image Library - still looking for annotators

Are you or someone you know looking to pick up a little extra work. Help build The Cell.

See http://www.cellimagelibrary.org/pages/employment for job description and application details.


Thank you,

David

David Orloff
Manager, Image Library
The American Society for Cell Biology
8120 Woodmont Ave., Suite 750
Bethesda, MD 20814-2762, USA

301-347-9305 (tel)
301-347-9310 (fax)

www.ascb.org
The Cell: An Image Library(tm): www.cellimagelibrary.org
LinkedIn Group: http://www.linkedin.com/groupRegistration?gid=3733425



The science of life, the life of science

See you at the ASCB's 51st Annual Meeting in Denver, Colorado, December 3-7, 2011!




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From: j.janssen-at-nki.nl
Date: Wed, 30 Mar 2011 10:02:24 -0500
Subject: [Microscopy] Anti-HA and anti-myc tag antibodies for immunogold

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Hi Micheal,
We use standard 2% PFA + 0,2% GA or only 2% PFA. Antibodies for myc-tag are 9E10 (M) or NKI-C3 (available as moab and poab) both work well on material fixed with the first fixative. For HA-tag we use 12CA5 (M) but this doesn't always work that good. All the mentioned ab's are commercially available.

Groeten, Hans.
Netherlands Cancer Institute.
Amsterdam.

-----Original Message-----
X-from: jarnikm-at-mail.nih.gov [mailto:jarnikm-at-mail.nih.gov]
Sent: woensdag 30 maart 2011 15:32
To: Hans Janssen

Dear list,

I need good antibodies (from different species, mouse and rabbit preferentially) against these two tags that would work for immunogold labeling on Tokuyasu cryosections. I think 6% formaldehyde, 4% formaldehyde/0.1% glutaraldehyde or 2% formaldehyde/0.2% glutaraldehyde would be the fixations I would try for the starters. Any recommendations?

Also, recommendations needed on suppliers of gold conjugates. For the last couple of years I was only using protein A from a single source that does not offer antibodies, so I do not have current information.

Thanks,

Michal

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 30 Mar 2011 19:37:56 -0500
Subject: [Microscopy] viaWWW:EDS unexpected Si peak

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Email: z.zhou-at-lboro.ac.uk Name: Zhou

Organization: Loughborough University

Title-Subject: [Filtered] EDS unexpected Si peak
Message: Dear All,

I use a 2000FX TEM at 200kV equipped with an Oxford Inca EDS, ultra-thin
window Si-Li detector.
Sometimes I get Si K line from a sample which should have no Si at all.

Can anybody please explain where the Si peak comes from?

Zhou



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 30 Mar 2011 19:38:26 -0500
Subject: [Microscopy] viaWWW: Freeze-fracture equipment repair/vendors

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Email: zasad008-at-umn.edu Name: Joe Zasadzinski

Organization: U of Minnesota

Title-Subject: [Filtered] Freeze-fracture equipment repair/vendors

Message: Does anyone support the RMC/JEOL RFD 9010 freeze-fracture
equipment? I am trying to find someone to help set up and trouble shoot
an instrument recently moved from UC Santa Barbara. There are a few
things that need repairing or replacing, but I am at a loss as to whom
to contact.

Thank you,



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From: lets_bike-at-yahoo.com
Date: Thu, 31 Mar 2011 09:04:48 -0500
Subject: [Microscopy] TEM - looking for a more stable embedding system

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Can you recommend a new embedding system for TEM sample preparation or do you have any suggestions on how to stop my drift issue?
 
I have been using a lower viscosity system for years.  LR White (Medium or Hard) has been part of my TEM sample preparation for many different microscopes (TEM - JEOL 100cx, 2010LB6, 2010F, 2500F, etc).  The only issue I have ever seen was when the carbon coating was too thin, Pop!  I just started using a JEOL 2100-Cryo and the sections are drifting horrifically (LR White Medium).

Background, etc..
I section my samples because I need views down the major zone axis. The samples I'm looking at are beam sensitive. Thus, I setup the JEOL 2100-Cryo microscope in a lower dose condition.  I also tried using the MDS.  The viewing time before beam destruction of the structure appears to be about the same as if I were viewing the sample on my 2010LB6.  I also looked at a Pt/Ir Cal. sample and found no drift issues at 1,000,000x.

I have tried the following with my LR White sections before viewing them on the 2100-Cryo (magnification 250KX-500KX):
- Normal carbon coating - Pop!
- Heaver carbon coating one side - Drift
- Same heavy coating but on both sides - Drift
- Heavy carbon coating on one side using a cryo-sample holder - Drift was greatly minimized but at -170C there was too much ice on the sample for HRTEM
- Sections were placed on an ultra thin carbon film and then I added a heavy carbon coating - Drift

Possible other options to try:
- Change the embedding system (to what?)
- Insert the 100um or 75um OL aperture
- Try cryo at an elevated temperature -80 or -120C (I would like to run samples at room temp.)
- It's time to retire (still too early for this)

Thanks,
Tom



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From: raristau-at-ims.uconn.edu
Date: Thu, 31 Mar 2011 09:20:39 -0500
Subject: [Microscopy] re: viaWWW:EDS unexpected Si peak

Contents Retrieved from Microscopy Listserver Archives
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I can think of two reasons for seeing the Si K peak.

First is the silicon internal flourescence peak, that is, the SiLi detector
itself emits Si K x-rays from the "dead layer," which are then detected by
the "active layer" of the detector. I have experienced this in some
detectors more than in others.

Second may be contamination from Si-based vacuum grease, transferred from
o-ring to loadlock wall to sample holder tip, during sample holder insertion
and retraction. Of course, it could also be from sample contamination: We
had an associate that habitually secured the TEM sample to the ion-milling
stub with Si-grease. This got transferred to the TEM holder and appeared in
all EDX spectra on that instrument. A thorough cleaning of the TEM sample
holder eliminated the Si K peak due to this problem.

Good luck
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




Email: z.zhou-at-lboro.ac.uk Name: Zhou

Organization: Loughborough University

Title-Subject: [Filtered] EDS unexpected Si peak
Message: Dear All,

I use a 2000FX TEM at 200kV equipped with an Oxford Inca EDS, ultra-thin
window Si-Li detector.
Sometimes I get Si K line from a sample which should have no Si at all.

Can anybody please explain where the Si peak comes from?

Zhou



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From: William.F.Tivol-at-aero.org
Date: 03/31/2011 07:27 AM
Subject: [Microscopy] re: viaWWW:EDS unexpected Si peak

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Roger & Zhou,
I ran into one additional source of Si. A specimen had been
placed on a glass slide and subjected to evaporation, then embedded and
sectioned. Sure enough, there was a prominent Si peak.
Yours,
Bill



X-from: raristau-at-ims.uconn.edu
To: William.F.Tivol-at-aero.org


I can think of two reasons for seeing the Si K peak.

First is the silicon internal flourescence peak, that is, the SiLi
detector
itself emits Si K x-rays from the "dead layer," which are then detected by
the "active layer" of the detector. I have experienced this in some
detectors more than in others.

Second may be contamination from Si-based vacuum grease, transferred from
o-ring to loadlock wall to sample holder tip, during sample holder
insertion
and retraction. Of course, it could also be from sample contamination: We
had an associate that habitually secured the TEM sample to the ion-milling
stub with Si-grease. This got transferred to the TEM holder and appeared
in
all EDX spectra on that instrument. A thorough cleaning of the TEM sample
holder eliminated the Si K peak due to this problem.

Good luck
Roger

Roger A. Ristau, PhD



Email: z.zhou-at-lboro.ac.uk Name: Zhou

Organization: Loughborough University

Title-Subject: [Filtered] EDS unexpected Si peak
Message: Dear All,

I use a 2000FX TEM at 200kV equipped with an Oxford Inca EDS, ultra-thin
window Si-Li detector.
Sometimes I get Si K line from a sample which should have no Si at all.

Can anybody please explain where the Si peak comes from?


==============================Original Headers==============================
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From: eschumacher-at-mccrone.com
Date: 03/31/2011 07:27 AM
Subject: [Microscopy] re: viaWWW:EDS unexpected Si peak

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Hello All,

Some types of grid storage boxes may also be sources of silicone contamination. If your samples are supported on grids, collect a spectrum from an area of the grid film without sample present for comparison, or put an unused grid into the scope and analyze a few areas to see whether anything other than carbon is present.

Regards,

Elaine

*********************************************************************
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Senior Research Scientist
McCrone Associates, Inc.
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Westmont, IL 60559-5539 USA
630-887-7100 (tel)
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E-mail: eschumacher-at-mccrone.com
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-----Original Message-----
X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org]
Sent: Thursday, March 31, 2011 11:34 AM
To: Elaine F. Schumacher

Dear Roger & Zhou,
I ran into one additional source of Si. A specimen had been
placed on a glass slide and subjected to evaporation, then embedded and
sectioned. Sure enough, there was a prominent Si peak.
Yours,
Bill



X-from: raristau-at-ims.uconn.edu
To: William.F.Tivol-at-aero.org


I can think of two reasons for seeing the Si K peak.

First is the silicon internal flourescence peak, that is, the SiLi
detector
itself emits Si K x-rays from the "dead layer," which are then detected by
the "active layer" of the detector. I have experienced this in some
detectors more than in others.

Second may be contamination from Si-based vacuum grease, transferred from
o-ring to loadlock wall to sample holder tip, during sample holder
insertion
and retraction. Of course, it could also be from sample contamination: We
had an associate that habitually secured the TEM sample to the ion-milling
stub with Si-grease. This got transferred to the TEM holder and appeared
in
all EDX spectra on that instrument. A thorough cleaning of the TEM sample
holder eliminated the Si K peak due to this problem.

Good luck
Roger

Roger A. Ristau, PhD



Email: z.zhou-at-lboro.ac.uk Name: Zhou

Organization: Loughborough University

Title-Subject: [Filtered] EDS unexpected Si peak
Message: Dear All,

I use a 2000FX TEM at 200kV equipped with an Oxford Inca EDS, ultra-thin
window Si-Li detector.
Sometimes I get Si K line from a sample which should have no Si at all.

Can anybody please explain where the Si peak comes from?


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From: gtuser-at-comcast.net
Date: Thu, 31 Mar 2011 14:17:40 -0500
Subject: [Microscopy] viaWWW:EDS unexpected Si peak

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Most modern detectors have much better resolution that in the past, but you
may want to see if you have an overlap with a heavier element. If memory
serves me Ta or W had m lines close to the Si k line. If your Si line is
very high then this will be less likely.

Your settings on the Oxford may be such that if you are using auto ID the
software is identifying it as Si to be sure you look for it.

Tommy D
NSWC Crane

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Email: z.zhou-at-lboro.ac.uk Name: Zhou

Organization: Loughborough University

Title-Subject: [Filtered] EDS unexpected Si peak
Message: Dear All,

I use a 2000FX TEM at 200kV equipped with an Oxford Inca EDS, ultra-thin
window Si-Li detector.
Sometimes I get Si K line from a sample which should have no Si at all.

Can anybody please explain where the Si peak comes from?

Zhou



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From: marcela.redigolo-at-mail.wvu.edu
Date: Thu, 31 Mar 2011 14:23:05 -0500
Subject: [Microscopy] Diffraction w/ Gatan SC600 TEM J2100

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Dear all,

I am looking for some tips to collect a diffration pattern of nanoparticles
using a TEM JEM2100 with a high resolution camera Gatan Orius SC600, without
damaging the sensitive CCD. I appreciate any help.

Thanks,

Marcela.

------
Marcela Redigolo
Shared Research Facilities
marcela.redigolo-at-mail.wvu.edu



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From: microscopylistserver-noreply-at-microscopy.com
Date: 03/31/2011 07:27 AM
Subject: [Filtered] [Microscopy] re: viaWWW:EDS unexpected Si peak

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Email: luo-at-mic.tamu.edu Name: Zhiping Luo

Organization: Texas A&M University

Title-Subject: [Filtered] RE: EDS unexpected Si peak

Message: Hi all,

This is a good subject for discussion. A way to identify the Si source
is to collect the spectra at difference spots. If the Si is seen on the
particle (or phase A), but not on the support film background (or phase
B), then we can say the Si is from the sample itself.

In the case Si is seen everywhere even on the hole without specimen,
then it is from the TEM system - service is needed!

Considering the spurious signals in the TEM, the different spots tested
should be far away enough.

Occasionally I receive the complaints about the Si that is not supposed
to have, mostly from the chemistry users. I prove to them that it is the
sample contaminated with Si, rather than the TEM. If the TEM is well
aligned, the EDS is quite reliable.

Sincerely,

Zhiping Luo

Microscopy and Imaging Center
Texas A&M University

----------------------------------------------------------------------------

Hello All,
Some types of grid storage boxes may also be sources of silicone
contamination. If your samples are supported on grids, collect a
spectrum from an area of the grid film without sample present for
comparison, or put an unused grid into the scope and analyze a few areas
to see whether anything other than carbon is present.
Regards,
Elaine
*********************************************************************
Elaine F.Schumacher
Senior Research Scientist
McCrone Associates, Inc.
850 Pasquinelli Drive
Westmont, IL 60559-5539 USA
630-887-7100 (tel)
630-887-7417 (fax)
E-mail: eschumacher-at-mccrone.com Web Site: www.mccrone.com
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-----Original Message-----
X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org] Sent:
Thursday, March 31, 2011 11:34 AM
To: Elaine F. Schumacher
Dear Roger & Zhou,
I ran into one additional source of Si. A specimen had been
placed on a glass slide and subjected to evaporation, then embedded and
sectioned. Sure enough, there was a prominent Si peak.
Yours,
Bill
X-from: raristau-at-ims.uconn.edu
To: William.F.Tivol-at-aero.org
I can think of two reasons for seeing the Si K peak.
First is the silicon internal flourescence peak, that is, the SiLi
detector
itself emits Si K x-rays from the "dead layer," which are then detected by
the "active layer" of the detector. I have experienced this in some
detectors more than in others.
Second may be contamination from Si-based vacuum grease, transferred from
o-ring to loadlock wall to sample holder tip, during sample holder insertion
and retraction. Of course, it could also be from sample contamination: We
had an associate that habitually secured the TEM sample to the ion-milling
stub with Si-grease. This got transferred to the TEM holder and appeared in
all EDX spectra on that instrument. A thorough cleaning of the TEM sample
holder eliminated the Si K peak due to this problem.
Good luck
Roger
Roger A. Ristau, PhD
Email: z.zhou-at-lboro.ac.uk Name: Zhou
Organization: Loughborough University
Title-Subject: [Filtered] EDS unexpected Si peak
Message: Dear All,
I use a 2000FX TEM at 200kV equipped with an Oxford Inca EDS, ultra-thin
window Si-Li detector.
Sometimes I get Si K line from a sample which should have no Si at all.
Can anybody please explain where the Si peak comes from?

Login Host: 165.91.108.201
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From: Marcela.Redigolo-at-mail.wvu.edu
Date: Thu, 31 Mar 2011 21:00:27 -0500
Subject: [Microscopy] Diffraction w/ Gatan SC600 TEM J2100

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Dear Bradford Ross:


Thanks for your reply! This is the process I am used to when working with other TEMs.


This TEM we have has two cameras. The upper one used for great part of the measurements, and the SC600 that
was installed for high resolution imaging for certain interface analyses. I was wondering if, different from the
usual process, is there any other settings to use with this camera without causing damage.


I am new to this microscope and apparently in the past someone caused a damage to the camera, because of the
diffraction pattern. It's my belief that something was done wrong and the usual process would work
just fine. But I decided to check just to be sure I'm not missing anything.


Thanks for the help, I appreciate.


Marcela.







---
Dr. Marcela Redigolo
TEM Specialist
Shared Research Facilities
(214) 766-2904


} } } "Ross, Bradford" 03/31/11 7:26 PM } } }
Hi Marcela,

Your TEM needs to have a beam stop above the camera to capture diffraction patterns. Typically this is inserted and adjusted with a small knob on the side of the column just above the viewing chamber.

Normally you would get the diffraction pattern you want to record on the fluorescent viewing screen, then insert the beam stop to a point that covers the bright central incident spot of the diffraction pattern, and then reduce the brightness of the pattern as much as possible with the brightness/intensity/C2 knob to reduce the possibility of damage to the CCD. After this is done it should be ok to lift the fluorescent screen and acquire an image with the camera. Once you have acquired the image, immediately lower the fluorescent screen again to protect the CCD.

If you need to change camera lengths, do not do this while the pattern is being viewed/recorded on the camera because the pattern may change position and the central spot could move away from the beam stop and damage the CCD.

Hope this helps,

Bradford Ross

Microscopy Technician
BioImaging Facility
University of British Columbia
6270 University Blvd.
Vancouver, B.C.
Canada
V6T 1Z4

phone 604-822-6996


________________________________________
X-from: marcela.redigolo-at-mail.wvu.edu [marcela.redigolo-at-mail.wvu.edu]
Sent: Thursday, March 31, 2011 12:28 PM
To: bnross-at-interchange.ubc.ca


Dear all,

I am looking for some tips to collect a diffration pattern of nanoparticles
using a TEM JEM2100 with a high resolution camera Gatan Orius SC600, without
damaging the sensitive CCD. I appreciate any help.

Thanks,

Marcela.









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From: contact-at-integrityscientific.com
Date: Thu, 31 Mar 2011 14:27:43
Subject: [Microscopy] Diffraction w/ Gatan SC600 TEM J2100

Contents Retrieved from Microscopy Listserver Archives
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Hi Marcela,
If you have an Orius camera you are well set up for diffraction. They are almost bullet proof and have anti-blooming, so spots stay sharp.
If you are sensible and careful there is no need for a beam stop. Use small condenser apertures and parallel illumination with a selected area aperture and well-focused SADP, you can have the pattern on the screen for minutes with no obvious damage.
Our camera was damaged by a user who had a large condenser aperture, no SA aperture, and an unfocused diffraction pattern giving a very high intensity caustic - i.e. Did
-----Original Message-----
X-from: marcela.redigolo-at-mail.wvu.edu


Dear all,

I am looking for some tips to collect a diffration pattern of nanoparticles
using a TEM JEM2100 with a high resolution camera Gatan Orius SC600, without
damaging the sensitive CCD. I appreciate any help.

Thanks,

Marcela.

------
Marcela Redigolo
Shared Research Facilities
marcela.redigolo-at-mail.wvu.edu



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From: nizets2-at-yahoo.com
Date: Fri, 1 Apr 2011 02:08:16 -0500
Subject: [Microscopy] TEM - looking for a more stable embedding system

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Hi Tom,

I never did cryo but from what you wrote it seems that you already tried the
most important things. Inserting the objective aperture will certainly help, but
it brings a strong background signal in EDX. The advantage is that it is very
easy to try.
You may definitely try another resin, look in the manufacturer sites for the
most usual of them.
You may also try crazy things, sometimes it works and desperate cases are the
best occasions to try them. In your case you may want to add some conductive
powder in the embedding medium for example. There should be a critical
concentration which is transparent enough to the electron while giving enough
conductivity to avoid drift.
Once I had a big problem of drift and I coated with a fine silver layer and it
worked wonderfully. It is probably not suitable for high magnifications but at
low magnification the structure of silver deposit was not visible.
Finally, retirement is always the best solution to solve problems at work. So
sad it has such a financial drawback!

Regards,
Stephane

 


----- Original Message ----
X-from: "lets_bike-at-yahoo.com" {lets_bike-at-yahoo.com}
To: nizets2-at-yahoo.com
Sent: Thu, March 31, 2011 4:09:55 PM

Can you recommend a new embedding system for TEM sample preparation or do you
have any suggestions on how to stop my drift issue?
 
I have been using a lower viscosity system for years.  LR White (Medium or Hard)
has been part of my TEM sample preparation for many different microscopes (TEM -
JEOL 100cx, 2010LB6, 2010F, 2500F, etc).  The only issue I have ever seen was
when the carbon coating was too thin, Pop!  I just started using a JEOL
2100-Cryo and the sections are drifting horrifically (LR White Medium).

Background, etc..
I section my samples because I need views down the major zone axis. The samples
I'm looking at are beam sensitive. Thus, I setup the JEOL 2100-Cryo microscope
in a lower dose condition.  I also tried using the MDS.  The viewing time before
beam destruction of the structure appears to be about the same as if I were
viewing the sample on my 2010LB6.  I also looked at a Pt/Ir Cal. sample and
found no drift issues at 1,000,000x.

I have tried the following with my LR White sections before viewing them on the
2100-Cryo (magnification 250KX-500KX):
- Normal carbon coating - Pop!
- Heaver carbon coating one side - Drift
- Same heavy coating but on both sides - Drift
- Heavy carbon coating on one side using a cryo-sample holder - Drift was
greatly minimized but at -170C there was too much ice on the sample for HRTEM

- Sections were placed on an ultra thin carbon film and then I added a heavy
carbon coating - Drift


Possible other options to try:
- Change the embedding system (to what?)
- Insert the 100um or 75um OL aperture
- Try cryo at an elevated temperature -80 or -120C (I would like to run samples
at room temp.)
- It's time to retire (still too early for this)

Thanks,
Tom



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From: contact-at-integrityscientific.com
Date: Fri, 1 Apr 2011 02:40:22 -0500
Subject: [Microscopy] Re: Diffraction w/ Gatan SC600 TEM J2100

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Apologies for the broken email.

That user didn't really know what they were doing; before it would only
been a sheet of film but getting a digital camera fixed is expensive.
On the other hand they can probably send an email, using only their
thumbs, better than I can...

Good luck

Richard

On 31/03/2011 20:27, marcela.redigolo-at-mail.wvu.edu wrote:
} ----------------------------------------------------------------------------
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} Dear all,
}
} I am looking for some tips to collect a diffration pattern of nanoparticles
} using a TEM JEM2100 with a high resolution camera Gatan Orius SC600, without
} damaging the sensitive CCD. I appreciate any help.
}
} Thanks,
}
} Marcela.
} 
} ------
} Marcela Redigolo
} Shared Research Facilities
} marcela.redigolo-at-mail.wvu.edu
}
}
}
} ==============================Original Headers==============================
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From: jsb43-at-cam.ac.uk
Date: Fri, 1 Apr 2011 07:08:44 -0500
Subject: [Microscopy] Re: Diffraction w/ Gatan SC600 TEM J2100

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Marcela,

Occasionally we have requests for diffraction patterns on the slow scan CCD
camera on our FEGTEMs. Two tips I can offer are these:

1. Start with high spot sizes (high excitations of the first condenser
lens). This will reduce the beam current, but improves the sharpness of the
diffraction spots (all other things being equal).

2. Keep the exposure times reasonably short ( {0.1 seconds) in the first
instance. Check the maximum intensity against the dynamic range of the
camera (your 14-bit camera may have a realistic maximum intensity of 14000
counts per pixel). Find the exposure time that will give get about 10000
counts maximum and then use multiple exposures to boost the total
acquisition time. In Digital Micrograph this will be via
"Camera} Acquisition Parameters} Acquire" scroll down menus. On the "GIF CCD
Setup" tab you will see a panel labelled "Processing" and "Frame Sum(#
frames)". This is usually set to "1" for a single shot image. Set this to
10 or more for a high signal diffraction pattern.

I've used this method a number of times to get reasonably sharp diffraction
patterns with good success.

Jon

On Mar 31 2011, marcela.redigolo-at-mail.wvu.edu wrote:
}
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} http://www.microscopy.com/MicroscopyListserver On-Line Help
} http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
} Dear all,
}
} I am looking for some tips to collect a diffration pattern of
} nanoparticles using a TEM JEM2100 with a high resolution camera Gatan
} Orius SC600, without damaging the sensitive CCD. I appreciate any help.
}
} Thanks,
}
} Marcela.


==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 1 Apr 2011 07:19:38 -0500
Subject: [Microscopy] viaWWW:Particle analysis software

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This Question/Comment was submitted to the Microscopy Listserver
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Email: jzheng-at-calit2.uci.edu Name: Jian-Guo Zheng

Organization: UC irvine

Title-Subject: [Filtered] Particle analysis software

Message: Hi,
I would appreciate it if you might tell me your advice about good
software for particle size analysis. I used to use Olympus-sis software.
It seems to me that this company has reorganized. I could not contact
the engineers who used to work for the company.
Thanks,
Jian-Guo
Login Host: 68.5.37.248
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From: Marcela.Redigolo-at-mail.wvu.edu
Date: Fri, 1 Apr 2011 07:32:31 -0500
Subject: [Microscopy] Re: Diffraction w/ Gatan SC600 TEM J2100

Contents Retrieved from Microscopy Listserver Archives
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Thank you all for the replies!
I took note of the tips and I appreciate.
They will be very helpful.


Thanks,


Marcela.




---
Dr. Marcela Redigolo
Shared Research Facilities
(214) 766-2904


==============================Original Headers==============================
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From: kcarlson15-at-cvtc.edu
Date: Fri, 1 Apr 2011 12:45:52 -0500
Subject: [Microscopy] SEM: need schematics for a JEOL 6060

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Our JEOL 6060LV SEM quickly pumps to a verified 3x10 -5 Torr, but fails to indicate readiness to turn on the gun. We suspect its hardware needs adjustment somewhere on the front panel of boards. We have ordered schematics from JEOL for $150 but it may be awhile before they arrive. Could someone send us a diagram or hint so that we might be up and running again for our students?
Thanks,

Kurt Carlson, Micro/Nano Fabrication Technician
Chippewa Valley Technical College - Manufacturing Education Center
NanoRite Innovation Center
715-874-4616
715-874-4603-Fax








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From: ben.micklem-at-pharm.ox.ac.uk
Date: Fri, 1 Apr 2011 12:46:13 -0500
Subject: [Microscopy] Neuroscience imaging position available in Oxford

Contents Retrieved from Microscopy Listserver Archives
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MRC ANATOMICAL NEUROPHARMACOLOGY UNIT
DEPARTMENT OF PHARMACOLOGY
UNIVERSITY OF OXFORD, UK

Imaging Research Technician

Full time ­ 36 hours/week Band 4 ­ Salary from £26,022 - £31,758 per annum

An Imaging Research Technician is required to manage and provide user
support for the IT and associated
imaging equipment of the ANU scientific programmes relating to the basal
ganglia ­ the objective of which is to understand the principles of
operation
of the neuronal networks of the basal ganglia in health and disease.
Bolam Lab web page: {http://mrcanu.pharm.ox.ac.uk/groups/paul.html}
Magill Lab web page: {http://mrcanu.pharm.ox.ac.uk/groups/pete.html}

Evidence of previous microscopy experience and digital
imaging work is essential. The post holder will also be required to perform
histological processing and digital reconstruction of labelled neurons,
train
others in microscopic techniques and support the research programme through
laboratory maintenance, ordering supplies and preparing reagents.
Experience of
website programming would be an advantage.

This is a permanent post with an initial probationary
period. Salary range £26,022 - £31,758 per annum in the MRC band 4 range,
depending on experience. We also offer optional membership
of MRC pension scheme and 30 days annual leave.

Candidates holding an
appropriate degree and with relevant experience should apply online at
{https://ext.ssc.rcuk.ac.uk/}
using post reference IRC18712. Please ensure you include a copy of your
CV, covering
letter and contact details for three professional referees within your
application. If you do not have internet
access or experience technical difficulties, please contact 01793 867003
quoting reference number IRC18712

For further information about the MRC
please visit {http://www.mrc.ac.uk}

Closing date for applications Thursday
28th April 2011

The MRC is an Equal Opportunities Employer.
Final appointments will be subject to pre-employment screening.



} } } } } } } }


Ben Micklem

--
Imaging Technician
MRC Anatomical Neuropharmacology Unit, Mansfield Road,
Oxford, OX1 3TH, United Kingdom. Telephone: 01865 271866
{http://mrcanu.pharm.ox.ac.uk/}




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From: mike.bode-at-resaltatech.com
Date: Fri, 1 Apr 2011 19:14:16 -0500
Subject: [Microscopy] viaWWW:Particle analysis software

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Jian-Guo,

You are right, Olympus-SIS has reorganized in the US. The light microscopy
applications (software, cameras and other hardware) was transferred to
Olympus America, the Electron Microscopy Products were transferred to
ResAlta Research Technologies (http://www.ResAltaTech.com). Please feel free
to contact me at Mike.Bode-at-ResAltaTech.com, or call me for further
information.

I am sorry you could not find the information about this reorganization.

Mike


---
Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com





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Email: jzheng-at-calit2.uci.edu Name: Jian-Guo Zheng

Organization: UC irvine

Title-Subject: [Filtered] Particle analysis software

Message: Hi,
I would appreciate it if you might tell me your advice about good
software for particle size analysis. I used to use Olympus-sis software.
It seems to me that this company has reorganized. I could not contact
the engineers who used to work for the company.
Thanks,
Jian-Guo
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 2 Apr 2011 08:30:01 -0500
Subject: [Microscopy] viaWWW:LM shopping for microscopes

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Email: james.passmore-at-sealedair.com Name: Jim Passmore

Organization: Sealed Air Corporation

Title-Subject: [Filtered] LM shopping for microscopes

Message: Hello all,

I have the rare opportunity to spend some money, and am shopping for a
couple of items. My applications are generally polymer materials,
particularly packaging films. I'm asking the following--

Stereo Microscope:
Each manufacturer seems to have several bodies available with different
zoom ranges. Some claim you need electronic control to get good results
on the higher zoom range/higher magnification configurations. Others
claim great results with a manual 16X zoom. We'd like to keep things
simple, but like the flexibility of a higher zoom. Opinions? Also, are
there other disadvantages to a large zoom range?

Confocal microscope, primarily for surface metrology, with some other
miscellaneous applications (no fluorescence):
Big question here is the pros & cons of the different types of
scopes--laser vs. white light. In addition, we're wondering about
maintenance and reliability, as the parts get expensive.

General discussion can go to the list, but please keep manufacturer
specifics off the list, of course.

Jim Passmore
Research Associate
Sealed Air Corporation

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 4 Apr 2011 07:27:54 -0500
Subject: [Microscopy] viaWWW:5th UVM Practical Course on 3D Cryo EM of Single Particles

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Email: mraderma-at-uvm,edu Name: Michael Radermacher

Organization: University of Vermont

Title-Subject: [Filtered] 5th UVM Practical Course on 3D Cryo EM of
Single Particles

Message: We are happy to announce the

5th UVM Practical Course
on Three-dimensional Cryo Electron Microscopy of Single Particles
July 24-31 2011,
University of Vermont, Burlington, VT

This international course will teach the principles of three-dimensional
reconstruction of single particles from cryo electron micrographs. The
course will include in-depth teaching of the basic theoretical
principles of single particle analysis, discussions and demonstrations
of experimental procedures, and six hours per day of hands-on processing
of data sets from electron micrographs of single particles. Participants
will work in groups of two. Each group will have one instructor, who
will provide step-by-step guidance through the complete
three-dimensional reconstruction process and offer additional
explanations and support. The course aims to provide participants with a
strong practical and theoretical background that will enable them later
to use these techniques in their home laboratory.

Application deadline: April 15th For details please visit:
http://physioweb.med.uvm.edu/Cryo_Practical/

(late applications may be accepted if space is available)
_________________________________
Michael Radermacher, PhD
Teresa Ruiz, PhD
University of Vermont
College of Medicine
Dept. Mol. Physiol. and Biophysics
149 Beaumont Ave
Burlington, VT 05405

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From: Nicolas.Stephant-at-univ-nantes.fr
Date: Mon, 4 Apr 2011 07:35:29 -0500
Subject: [Microscopy] Re: SEM: need schematics for a JEOL 6060

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I'm afraid this vacuum is not good enough to obtain ready signal. It's
better to look for vacuum leak (checking O-rings for example) or pumping
problem.
If your vacuum stays like that you will change often filament and get
oil on the chamber.
As I remenber there is a potentiometer to adjust ready level on the EVAC
I/O board of the microscope but it should be ajusted only when the SEM
can reach a good vacuum (best value around 4X10 -6 mbar).

--
Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung


kcarlson15-at-cvtc.edu a écrit :
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} Our JEOL 6060LV SEM quickly pumps to a verified 3x10 -5 Torr, but fails to indicate readiness to turn on the gun. We suspect its hardware needs adjustment somewhere on the front panel of boards. We have ordered schematics from JEOL for $150 but it may be awhile before they arrive. Could someone send us a diagram or hint so that we might be up and running again for our students?
} Thanks,
}
} Kurt Carlson, Micro/Nano Fabrication Technician
} Chippewa Valley Technical College - Manufacturing Education Center
} NanoRite Innovation Center
} 715-874-4616
} 715-874-4603-Fax
}
}
}
}
}


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From: giselle.walker-at-anatomy.otago.ac.nz
Date: Mon, 4 Apr 2011 18:12:01 -0500
Subject: [Microscopy] long-term storage of resin blocks for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone have any opinions on whether resin blocks deteriorate over time (i.e. decades), and whether some storage options (airtight, low temperature...?) are more appropriate than others?

This has implications for type specimens deposited in museums, where the primary description of a species is based on TEM. Singe-celled eukaryotes often have no other useful type material. Anecdotally, preservation of ultrastructure in some blocks from the 1960s has deteriorated since they were looked at in the 1980s - but it's unclear if this is a general pattern.

thanks

Giselle

--
Dr Giselle Walker
Microscopy Otago - Electron Microscopy
Department of Anatomy & Structural Biology
University of Otago
P.O. Box 913, Dunedin 9054
New Zealand

Phone: +64 (0)3 479 7301, +64 (0)210 403 669
Email: giselle.walker-at-anatomy.otago.ac.nz






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From: Phil.Ahrenkiel-at-sdsmt.edu
Date: Mon, 4 Apr 2011 18:54:27 -0500
Subject: [Microscopy] H-7000 TEM for sale

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Looks like we have to surplus our Hitachi H-7000 FA TEM: We have a new JEOL, and someone else has claimed the lab space for the H-7000 starting in fall 2011, so I'm putting it up for sale. You can find details at: http://ahrenkiel.sdsmt.edu/H7000_TEM/. Please go to the link for "surplus" at the bottom of the page.

I'd prefer to sell the whole thing together, but am willing to discuss parting it out. A bevy of accessories are included - The EDX system (minus the detector) is practically new. Don't feel timid to make an offer.

The annual service contract on this model is relatively inexpensive. I wish I could keep both microscopes, but letting go of the things we are attached to is part of the cycle of life. Hopefully, there is a nice, new home for it out there somewhere.
------------------------------------------
Phil Ahrenkiel, Assistant Professor
Nanoscience and Nanoengineering Ph.D. Program
South Dakota School of Mines and Technology
501 E. Saint Joseph St.
Rapid City, SD 57701 U.S.A.
Office: EP 221
Phone: 605-394-5238, Fax: 605-394-2365
Email: Phil.Ahrenkiel-at-sdsmt.edu



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From: leunissen-at-aurion.nl
Date: Mon, 4 Apr 2011 19:10:44 -0500
Subject: [Microscopy] Re: long-term storage of resin blocks for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Giselle,

Are you thinking of deterioration of resin over time? Polymerization may not be completely over and done with within a day or two, but continue more and more slowly during storage. Also UV light exposure should probably be avoided. All this would make the blocks more brittle over time, by reducing chin length or breaking bonds. But there is also the risk that any of the used chemicals (e.g. OsO4) is not completely inactive or thoroughly washed out before embedding. And there is not much one can do afterwards...

I would therefore choose conditions that reduce reaction speed (Q10) in general, i.e. relatively low temperature storage away from direct light.

Cheers


Jan

Jan Leunissen
Aurion

On 5/04/2011, at 11:12 AM, giselle.walker-at-anatomy.otago.ac.nz wrote:

}
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} Does anyone have any opinions on whether resin blocks deteriorate over time (i.e. decades), and whether some storage options (airtight, low temperature...?) are more appropriate than others?
}
} This has implications for type specimens deposited in museums, where the primary description of a species is based on TEM. Singe-celled eukaryotes often have no other useful type material. Anecdotally, preservation of ultrastructure in some blocks from the 1960s has deteriorated since they were looked at in the 1980s - but it's unclear if this is a general pattern.
}
} thanks
}
} Giselle
}
} --
} Dr Giselle Walker
} Microscopy Otago - Electron Microscopy
} Department of Anatomy & Structural Biology
} University of Otago
} P.O. Box 913, Dunedin 9054
} New Zealand
}
} Phone: +64 (0)3 479 7301, +64 (0)210 403 669
} Email: giselle.walker-at-anatomy.otago.ac.nz
}
}
}
}
}
}
} ==============================Original Headers==============================
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} 11, 30 -- Subject: long-term storage of resin blocks for TEM
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 4 Apr 2011 19:21:57 -0500
Subject: [Microscopy] viaWWW:Suggestion needed for carbon coater

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Email: xiaohu.tang-at-beg.utexas.edu Name: Xiaohu Tang

Organization: Univ of Texas at Austin

Title-Subject: [Filtered] Suggestion needed for carbon coater

Message: Dear listeners,

I am looking for a carbon coater for our lab but feel difficult to
choose from such as Emitech, Ted Pella, Denton Vaccum, SPI, or
Cressington, etc. Since we are not working on very high mag so carbon
coater is enough. Most of our samples are thin-section rocks. What we
need is a stable, robust, not too expensive and with good service. You
will be highly appreciated if you could give your advice and share with
your experience on these brands carbon coater. You can also send it to
my email xiaohu.tang-at-beg.utexas.edu

Thanks!

Xiaohu

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From: ehaller-at-health.usf.edu
Date: Tue, 5 Apr 2011 07:38:42 -0500
Subject: [Microscopy] long-term storage of resin blocks for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Giselle,

I just sectioned blocks from 1976 two weeks ago. The blocks cut fine, with the exception that some areas had not been infiltrated properly when they were initially processed. The tissue was of sea slug that was rare and irreplacable. We got the information from the blocks that we needed. The plastic was epon-araldite. Tissue preservation was perfect in properly embedded areas, and the plastic was stable in the beam. If the samples are prepared properly in the first place, they are permanently archived in the plastic for a long, long time. Store the blocks in a climate-controlled area. The blocks I cut were stored in someone's attic. I was surprised that they survived the harsh heat and cold in that environment! I have sections that I cut, still on grids, from 1974, that I can put in the TEM and photograph today. If the sections are stored properly, they are archival, too. They are not on carbon or formvar films, just bare copper grids that have been kept in a low humidity environment all this time. I have re-scoped them several times before. It's been my experience that tissue deterioration in blocks comes from improper dehydration or infiltration during processing. If the samples were run up properly in the first place, the tissue is archival. It is possible, and I have seen this, to have a processing schedule that is barely usable, that just gets a person by. This produces tissue where the osmium is not fully washed out, or the tissue is not fully dehydrated, and the blocks are either soft or brittle. You may be able to cut the tissue initially, but the blocks deteriorate with time. Well processed tissue will not do this. The processing problems usually occur when trying to process tissue that is too large, or when running something up too fast, or when using old chemicals. That, at least, has been my experience. You may have come to similar conclusions. Epoxy blocks commonly used for E.M. should be archival. Lowicryls and LR White and Gold may pick up moisture with time and deteriorate. They shou!
ld also
be protected from UV light, since most of the work with these resins is for immunogold labeling, and antigenic preservation is the goal. I always remove my blocks from block molds. I don't know if the plastic from the mold will interact with the tissue or epoxy in the block with time.

Ed Haller

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: giselle.walker-at-anatomy.otago.ac.nz [giselle.walker-at-anatomy.otago.ac.nz]
Sent: Monday, April 04, 2011 7:20 PM
To: Haller, Edward

Does anyone have any opinions on whether resin blocks deteriorate over time (i.e. decades), and whether some storage options (airtight, low temperature...?) are more appropriate than others?

This has implications for type specimens deposited in museums, where the primary description of a species is based on TEM. Singe-celled eukaryotes often have no other useful type material. Anecdotally, preservation of ultrastructure in some blocks from the 1960s has deteriorated since they were looked at in the 1980s - but it's unclear if this is a general pattern.

thanks

Giselle

--
Dr Giselle Walker
Microscopy Otago - Electron Microscopy
Department of Anatomy & Structural Biology
University of Otago
P.O. Box 913, Dunedin 9054
New Zealand

Phone: +64 (0)3 479 7301, +64 (0)210 403 669
Email: giselle.walker-at-anatomy.otago.ac.nz






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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 5 Apr 2011 08:02:23 -0500
Subject: [Microscopy] viaWWW:Vacuum problems on JEOL 840

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Email: arjay007-at-gmail.com Name: Ritchie Sims

Organization: The University of Auckland

Title-Subject: [Filtered] Vacuum problems on JEOL 840

Message: Hi
I switched the 840 off while on vacation, and now I have vacuum
problems. With manual control of the valves, I can't get the RP to get
the DP pressure down to where it has been for years. I have a 100uA
meter connected to the PG3 test points down on the bottom RH corner of
the vacuum control board, usually this sits at about 10uA (where 70 or
80 is about the level for the PiG3 warning LED to come on) but now I
can't get it below 45uA. The pressure is down low enough to switch PiG3
LED off, but I really really don't want to risk cooking the DP Santovac.
Finding out what's going on is hampered by (a) the timer that switches
the whole thing off after 20minutes and (b) the fact that I don't really
know what backing pressure I am actually getting down to.

Four questions:

(a) How can I defeat the 20-minute switchoff timer so that I can at
least let the RP have a decent long suck on the (cold) DPs to see if it
will come right given enough time?

(b) What does the backing pressure have to get down to in order to avoid
not cooking the Santovac?

(c) Is it ok, after separately pumping the chamber, the gun, and the DPs
down to about 1 x 10-1 mbar, to then manually open the valves V2, V1A,
and V1B ie the valves as they are usually in the 'pumpdown' state, but
with the DPs cold? At least then I would know what backing pressure I
was getting down to, as I have 'proper' vacuum gauges on both the gun
and the chamber. Maybe it is OK to turn on the DP heaters, but I'm
reluctant to do so until I know what my backing pressure is.

(d) Anyone got any suggestions or comments as to what might be going on?

cheers
Ritchie Sims
(the listserver rejects postings from me as myself)

Login Host: 130.216.59.110
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From: delannoy-at-jhmi.edu
Date: Tue, 5 Apr 2011 08:41:39 -0500
Subject: [Microscopy] Durcupan

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello listservers,
I recently had embedding issues with Drosophila eyes where some pigment
granules were not infiltrated (resulting in holes). I had tried extended
parts of both Epon and Spurrs to propylene but some heads would not infiltrate. I came upon Durcupan through a recent Science cover,and tried a run with much success. Although I did dehydrate and transition with propylene oxide (to get maximum infiltration), I read in the product description that Component A is water miscible, and that you could avoid both ETOH and transition solvents by dehydrating with it.

My questions are has anyone tried this and gotten successful infiltration (not
only insects but all types of tissues or cells)? What does the dehydration (in Component A) schedule look like? Shouldn't this be the norm to avoid shrinkage and extraction by these solvents? Are there any drawbacks?

P.S. LR White embedding was also used but the orientation was hit or miss
as embedding must be done in gelatin capsules.

Thank you,


Michael Delannoy
Associate Director
JHMI Microscope Facility
Physiology G-04
725 N. Wolfe St.
Baltimore, MD 21205

(410) 955-1365


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From: mmashore-at-vapop.ucsd.edu
Date: Tue, 5 Apr 2011 13:27:07 -0500
Subject: [Microscopy] Job Description Help

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Giselle,

Several years ago I sectioned blocks that were about 20 years old and they
were perfect. These were ones that had not been previously used or trimmed.
They had been kept in thin cardboard pill boxes inside 8X10 inch Kodak
photographic paper boxes in a glass door cabinet. Humidity in the summer in
Philadelphia is usually very high so I¹d say that the lab ran about 80% even
with the air conditioning on. Temperature in the lab would range from near
65 most of the winter (trouble with heating system in our ancient building)
to high-70's in the summer.

To my knowledge these blocks would have been made after I had run out of
Epon 812 (original formula from Shell, for the younger members of our
Listserv) but they just may have been embedded with the ³good stuff² towards
the end of my supply. The blocks were cured at 60 C for a minimum of 48
hours if not over a weekend.

You mentioned that your blocks were from the 60's. That was still a time
when Epon 812 was still the embedding of choice for many labs but there were
also many other embeddings being used like Araldite/Epon mixtures with which
I am unfamiliar.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E ­ Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not
represent the NIH. This message is not confidential and can be freely shared
and reproduced.

===
X-from: {leunissen-at-aurion.nl}
Reply-To: {leunissen-at-aurion.nl}

Dear all,

I was hoping to get some expert advice about a job description. I have
included the job description below. I would like receive feedback as to what
a person who fulfills these responsibilities would be hired at (i.e. Core
Director, Core Manager, Research Associate 1, etc.). I would also like to
know what you would consider the highest level of education you think would
be needed for this position. I realize the job description is quite long,
but I appreciate any feedback.

Thank You.

Essential Duties and Responsibilities

1. Preparation of specimens such as paraffin, EM, hard tissue embedding
and embedding frozen tissue in OCT compound.
2. EM, hard tissue, paraffin and frozen (cryosectioning) tissue
sectioning.
3. Operate a Zeiss 10 Transmission Electron Microscope and Gatan 785
Digital Imaging system.
4. Operate a Zeiss LSM 510 and Pascal Confocal Microscope.
5. Operate a Zeiss Axio Observer, 21 Inverted Microscope with FRET,
transmitted brightfield, DTC and Epi-fluorescence capabilities.
6. Requisitioning and Ordering supplies.
7. Maintains Equipment/supplies/Facilities: Maintains the laboratory
facilities and equipment and controls supplies. Ensures that a sufficient
supply of reagents, standards and controls are available at all times by
ordering an adequate supply from commercial sources or preparing variety of
specialized solutions or reagents. Using established procedures, calibrates,
controls, and maintains a variety of instrumentation and laboratory
equipment. When calibrations fall outside the acceptable limits, incumbent
uses independent judgment in adjusting either the procedure or the
mechanical device used in the determination to bring the procedures into
good quality control. Plus general lab cleaning.
8. Customer Services: In accordance with Service procedures, answers
the phone promptly in a courteous manner, identifying self and service.
Similarly, outgoing calls are handled appropriately and politely. Valid
complaints about failure to do so are not normally received by his/her
supervisor. Shows positive evidence of a helpful attitude to other staff,
visitors and clients through such actions as a consistent display of
courtesy. Success in the area is measured by observation plus evaluation of
any valid complaints and or commendations received during the rating period.
Promotes attitude and procedures that foster both internal and external
customer satisfaction.
9. Security: Incumbent is responsible for maintaining security of
information in computerized systems in accordance with medial center policy:
the Privacy Act; and other applicable laws, rules, regulations, and
policies.
10. Safety: Inspect laboratory space for safe conditions and conformance
to safety procedure.
11. Prepare core facilities invoices for jobs completed.





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From: chaueter-at-bcm.edu
Date: Tue, 5 Apr 2011 15:45:24 -0500
Subject: [Microscopy] Anti-HA and anti-myc tag antibodies for immunogold

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Michal,

For anti-HA, we use HA.11 Clone16B12 Mouse Monoclonal AB Covance. It works pretty well for immunoflourescence and immunogold labelling.

For pre-embed immunogold labelling, we tried different fixative strengths and length of fixation and found overnight fixation with 4% formaldehyde (PFA) achieved adequate ultrastructure and optimal labelling. We had tried adding 0.1% or 1% glutaraldehyde but the labelling decreased and became less consistent.

For immunoflourescence labelling on thick cryosections, 3 hour 4% PFA was sufficient to get labelling and good, intact morphology under LM. I have not yet tried labelling thin cryosections for TEM on these samples but hopefully soon. But I feel we have a good headstart with our preliminary data.

Hopefully by now you have the vendor informations. Just in case, there's Aurion and Nanoprobes.


Good Luck,

Claire

Dear list,
I need good antibodies (from different species, mouse and rabbit preferentially) against these two tags that would work for immunogold labeling on Tokuyasu cryosections. I think 6% formaldehyde, 4% formaldehyde/0.1% glutaraldehyde or 2% formaldehyde/0.2% glutaraldehyde would be the fixations I would try for the starters. Any recommendations?
Also, recommendations needed on suppliers of gold conjugates. For the last couple of years I was only using protein A from a single source that does not offer antibodies, so I do not have current information.
Thanks,
Michal

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From: steven.samuelsson-at-sri.com
Date: Tue, 5 Apr 2011 17:03:44 -0500
Subject: [Microscopy] EM of Mantis Ootheca

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

May I learn tips and tricks for fixation and processing of praying
mantis egg cases for ultrastructure, both SEM and thin section TEM. A
interest are the ootheca and not the embryos.

Thanks so much,

Steve

--
Steven Samuelsson, PhD
Director
Cell and Molecular Imaging Facility
100-51
SRI International, Inc.
333 Ravenswood Ave
Menlo Park, CA 94061
(650) 859-2980


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From: nantho2-at-emory.edu
Date: Tue, 5 Apr 2011 18:55:09 -0500
Subject: [Microscopy] FLIM detectors

Contents Retrieved from Microscopy Listserver Archives
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Hi all,

I was wondering if anybody has had any experience with fast, large area
(3-10mm), photon counters for FLIM acquisition. I was hoping that
somebody might have used a B&H HPM-100-40 detector, and might be able to
give me some feedback...

Thanks for your time.

Neil



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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 5 Apr 2011 21:11:06 -0500
Subject: [Microscopy] viaWWW:some progress with 840 vacuum

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Email: arjay007-at-gmail.com Name: Ritchie Sims

Organization: The University of Auckland

Title-Subject: [Filtered] some progress with 840 vacuum

Message: Thanks to all who have replied.

I realise that my initial posting may not have been completely clear:

What I am having trouble with is getting the DPs down to a good roughing
vacuum before switching on the heaters ie all this is with the DPs cold.
In the past I have been able to get it down to 20uA (on the 100uA panel
meter that I have attached to the PG3 test points) with no problems, but
now it gets down only to 40uA, and although this is sufficient vacuum to
extinguish the PiG3 LED (and the AUTO mode would presumably take this as
good enough) I am somewhat un-nerved by the apparent change and too
suspicious to switch on the DP heaters.
Just now I have figured out, with the assistance of one of you, how to
defeat the 20-minute timer. It is the timer that shuts down the system
if the DPs have not warmed up within 20 minutes of startup, so defeating
it is just a matter of jumpering the warmup thermal switches on the two
DPs. This makes the HEATER LED turn off, and the timer (presumably IC
2A, a type 51845 about which I can find no information) no longer
switches the system off. So I can leave the RP sucking on the cold DPs
overnight, see if the vacuum improves.

And now I have had the courage to get the three system spaces down as
far as I can (still with the DPs cold) and open all the valves that are
usually open when it's in the "OK-to-use" state ie RP open to DPs, DPs
open to gun and column. The gun vacuum gauge reads about 0.03 mbar
(about 0.02 torr), so the backing pressure for the DPs must be at least
as low as this.
The question now is: Is 0.03mbar a good enough vacuum to switch on the
DP heaters without running the risk of charring the Santovac?

all the best
Ritchie



Message: Hi
I switched the 840 off while on vacation, and now I have vacuum
problems. With manual control of the valves, I can't get the RP to get
the DP pressure down to where it has been for years. I have a 100uA
meter connected to the PG3 test points down on the bottom RH corner of
the vacuum control board, usually this sits at about 10uA (where 70 or
80 is about the level for the PiG3 warning LED to come on) but now I
can't get it below 45uA. The pressure is down low enough to switch PiG3
LED off, but I really really don't want to risk cooking the DP Santovac.
Finding out what's going on is hampered by (a) the timer that switches
the whole thing off after 20minutes and (b) the fact that I don't really
know what backing pressure I am actually getting down to.

Four questions:

(a) How can I defeat the 20-minute switchoff timer so that I can at
least let the RP have a decent long suck on the (cold) DPs to see if it
will come right given enough time?

(b) What does the backing pressure have to get down to in order to avoid
not cooking the Santovac?

(c) Is it ok, after separately pumping the chamber, the gun, and the DPs
down to about 1 x 10-1 mbar, to then manually open the valves V2, V1A,
and V1B ie the valves as they are usually in the 'pumpdown' state, but
with the DPs cold? At least then I would know what backing pressure I
was getting down to, as I have 'proper' vacuum gauges on both the gun
and the chamber. Maybe it is OK to turn on the DP heaters, but I'm
reluctant to do so until I know what my backing pressure is.

(d) Anyone got any suggestions or comments as to what might be going on?


Login Host: 130.216.59.110
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From: stefan.diller-at-t-online.de
Date: Wed, 6 Apr 2011 01:33:20 -0500
Subject: [Microscopy] Re: viaWWW:some progress with 840 vacuum

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Ritchie,
going down with the roughing pumps to 0,02 torr is more than five times lower than you need for a good backing pressure of the
diffusion pumps.
Switch them on, pump down and be happy (if no other problem arises) :-)

Best wishes,
Stefan


-----------------------------------------------------
Stefan Diller - Wissenschaftliche Photographie
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 06.04.11 04:16, schrieb microscopylistserver-noreply-at-microscopy.com:
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} replying please copy both arjay007-at-gmail.com as well as the
} MIcroscopy Listserver
} ---------------------------------------------------------------------------
}
} Email: arjay007-at-gmail.com Name: Ritchie Sims
}
} Organization: The University of Auckland
}
} Title-Subject: [Filtered] some progress with 840 vacuum
}
} Message: Thanks to all who have replied.
}
} I realise that my initial posting may not have been completely clear:
}
} What I am having trouble with is getting the DPs down to a good roughing
} vacuum before switching on the heaters ie all this is with the DPs cold.
} In the past I have been able to get it down to 20uA (on the 100uA panel
} meter that I have attached to the PG3 test points) with no problems, but
} now it gets down only to 40uA, and although this is sufficient vacuum to
} extinguish the PiG3 LED (and the AUTO mode would presumably take this as
} good enough) I am somewhat un-nerved by the apparent change and too
} suspicious to switch on the DP heaters.
} Just now I have figured out, with the assistance of one of you, how to
} defeat the 20-minute timer. It is the timer that shuts down the system
} if the DPs have not warmed up within 20 minutes of startup, so defeating
} it is just a matter of jumpering the warmup thermal switches on the two
} DPs. This makes the HEATER LED turn off, and the timer (presumably IC
} 2A, a type 51845 about which I can find no information) no longer
} switches the system off. So I can leave the RP sucking on the cold DPs
} overnight, see if the vacuum improves.
}
} And now I have had the courage to get the three system spaces down as
} far as I can (still with the DPs cold) and open all the valves that are
} usually open when it's in the "OK-to-use" state ie RP open to DPs, DPs
} open to gun and column. The gun vacuum gauge reads about 0.03 mbar
} (about 0.02 torr), so the backing pressure for the DPs must be at least
} as low as this.
} The question now is: Is 0.03mbar a good enough vacuum to switch on the
} DP heaters without running the risk of charring the Santovac?
}
} all the best
} Ritchie
}
}
}
} Message: Hi
} I switched the 840 off while on vacation, and now I have vacuum
} problems. With manual control of the valves, I can't get the RP to get
} the DP pressure down to where it has been for years. I have a 100uA
} meter connected to the PG3 test points down on the bottom RH corner of
} the vacuum control board, usually this sits at about 10uA (where 70 or
} 80 is about the level for the PiG3 warning LED to come on) but now I
} can't get it below 45uA. The pressure is down low enough to switch PiG3
} LED off, but I really really don't want to risk cooking the DP Santovac.
} Finding out what's going on is hampered by (a) the timer that switches
} the whole thing off after 20minutes and (b) the fact that I don't really
} know what backing pressure I am actually getting down to.
}
} Four questions:
}
} (a) How can I defeat the 20-minute switchoff timer so that I can at
} least let the RP have a decent long suck on the (cold) DPs to see if it
} will come right given enough time?
}
} (b) What does the backing pressure have to get down to in order to avoid
} not cooking the Santovac?
}
} (c) Is it ok, after separately pumping the chamber, the gun, and the DPs
} down to about 1 x 10-1 mbar, to then manually open the valves V2, V1A,
} and V1B ie the valves as they are usually in the 'pumpdown' state, but
} with the DPs cold? At least then I would know what backing pressure I
} was getting down to, as I have 'proper' vacuum gauges on both the gun
} and the chamber. Maybe it is OK to turn on the DP heaters, but I'm
} reluctant to do so until I know what my backing pressure is.
}
} (d) Anyone got any suggestions or comments as to what might be going on?
}
}
} Login Host: 130.216.59.110
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
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From: benada-at-biomed.cas.cz
Date: Wed, 6 Apr 2011 02:23:55 -0500
Subject: [Microscopy] Re: viaWWW:some progress with 840 vacuum

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Ritchie,
I do not have any experiences with 840 vacuum, but similar problem we had to solve on our old
Balzers BAF 301. We were not able to get sufficient roughing vacuum and ODP did not start at
all. The solution was really easy. We had to clean Pirani gauge because Pirani gauge with
heavily contaminated measuring sensor gives wrong values of vacuum.

-------------------------------------------------------
There is, in the old good Balzers manual, a procedure how to clean Balzers Pirani gauge TPR 010
(in short):
- Dismount Pirani gauge and remove O-ring and porous filter.
- Fill the measuring chamber with solvent (trichlor-ethylene, gasoline) close the opening with
proper stopper and shake the gauge head thoroughly.
- Remove the stopper and fill the gauge head completely with solvent.
- Rest the gauge head for some longer time.

If this cleaning is not sufficient, there is a more rough method:
- Evacuate the gauge head to the lowest possible vacuum.
- Connect a foreign voltage of about 10 V to the pins of the measuring sensor and heat it for 10
seconds.
--------------------------------------------------------

Please, the procedures above are valid only for this specific Balzers Pirani gauge TPR 010, but
you may find something similar for your pirani gauge.

Good luck Oldrich


--
Oldrich Benada
Institute of Microbiology ASCR, v.v.i.
Vidensk8 1083
142 20 Prague 4

On Wednesday 06 of April 2011 04:13:50 you wrote:
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} Email: arjay007-at-gmail.com Name: Ritchie Sims
}
} Organization: The University of Auckland
}
} Title-Subject: [Filtered] some progress with 840 vacuum
}
} Message: Thanks to all who have replied.
}
} I realise that my initial posting may not have been completely clear:
}
} What I am having trouble with is getting the DPs down to a good roughing
} vacuum before switching on the heaters ie all this is with the DPs cold.
} In the past I have been able to get it down to 20uA (on the 100uA panel
} meter that I have attached to the PG3 test points) with no problems, but
} now it gets down only to 40uA, and although this is sufficient vacuum to
} extinguish the PiG3 LED (and the AUTO mode would presumably take this as
} good enough) I am somewhat un-nerved by the apparent change and too
} suspicious to switch on the DP heaters.
} Just now I have figured out, with the assistance of one of you, how to
} defeat the 20-minute timer. It is the timer that shuts down the system
} if the DPs have not warmed up within 20 minutes of startup, so defeating
} it is just a matter of jumpering the warmup thermal switches on the two
} DPs. This makes the HEATER LED turn off, and the timer (presumably IC
} 2A, a type 51845 about which I can find no information) no longer
} switches the system off. So I can leave the RP sucking on the cold DPs
} overnight, see if the vacuum improves.
}
} And now I have had the courage to get the three system spaces down as
} far as I can (still with the DPs cold) and open all the valves that are
} usually open when it's in the "OK-to-use" state ie RP open to DPs, DPs
} open to gun and column. The gun vacuum gauge reads about 0.03 mbar
} (about 0.02 torr), so the backing pressure for the DPs must be at least
} as low as this.
} The question now is: Is 0.03mbar a good enough vacuum to switch on the
} DP heaters without running the risk of charring the Santovac?
}
} all the best
} Ritchie
}
}
}
} Message: Hi
} I switched the 840 off while on vacation, and now I have vacuum
} problems. With manual control of the valves, I can't get the RP to get
} the DP pressure down to where it has been for years. I have a 100uA
} meter connected to the PG3 test points down on the bottom RH corner of
} the vacuum control board, usually this sits at about 10uA (where 70 or
} 80 is about the level for the PiG3 warning LED to come on) but now I
} can't get it below 45uA. The pressure is down low enough to switch PiG3
} LED off, but I really really don't want to risk cooking the DP Santovac.
} Finding out what's going on is hampered by (a) the timer that switches
} the whole thing off after 20minutes and (b) the fact that I don't really
} know what backing pressure I am actually getting down to.
}
} Four questions:
}
} (a) How can I defeat the 20-minute switchoff timer so that I can at
} least let the RP have a decent long suck on the (cold) DPs to see if it
} will come right given enough time?
}
} (b) What does the backing pressure have to get down to in order to avoid
} not cooking the Santovac?
}
} (c) Is it ok, after separately pumping the chamber, the gun, and the DPs
} down to about 1 x 10-1 mbar, to then manually open the valves V2, V1A,
} and V1B ie the valves as they are usually in the 'pumpdown' state, but
} with the DPs cold? At least then I would know what backing pressure I
} was getting down to, as I have 'proper' vacuum gauges on both the gun
} and the chamber. Maybe it is OK to turn on the DP heaters, but I'm
} reluctant to do so until I know what my backing pressure is.
}
} (d) Anyone got any suggestions or comments as to what might be going on?
}
}
} Login Host: 130.216.59.110
} ---------------------------------------------------------------------------
}
}
}
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==============================Original Headers==============================
8, 22 -- From benada-at-biomed.cas.cz Wed Apr 6 02:23:54 2011
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From: PhillipsT-at-missouri.edu
Date: Wed, 6 Apr 2011 10:44:10 -0500
Subject: [Microscopy] Clara cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I just read a fascinating article on Max Clara who is best known for his description of the bronchiolar epithelial cell commonly called a "Clara cell".  The authors point out his work was aided by this "rather extensive and perfectly fixed material" from recently executed individuals and that he went on to be  Chair of Anatomy at Leipzig University partly due to his prominence in the Nazi party. The authors argue that "club cell" might be a more fitting word to use in place of "Clara cell".   

Eur Respir J. 2010 Oct;36(4):722-7. Winkelmann A, Noack T. The Clara cell: a "Third Reich eponym"?

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/



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From: jkrupp-at-deltacollege.edu
Date: Wed, 6 Apr 2011 12:18:09 -0500
Subject: [Microscopy] To clean or not to clean bell jar

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

One nice thing about having interested students is that they do not hesitate to ask questions that I have never thought much about.


The latest one came up while demonstrating the coaters in the lab. A student asked what to use to clean them and how often. I answered that I usually use a little water, maybe some detergent or a special solution that makes it easier to clean with water. How often was less clear, I have seen labs where bell jars etc are cleaned after each use and labs where it doesn't look like the glass has ever been cleaned.

What is your advice and experience?



Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: oshel1pe-at-cmich.edu
Date: Wed, 6 Apr 2011 12:29:09 -0500
Subject: [Microscopy] Re: To clean or not to clean bell jar

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jon,

I use Bon Ami and clean when it looks like it needs it.
Nice and precise, yes?
If I know I'm going to need a Wonderful Perfect Must Be High
Resolution coat, I'll clean at least the day before and pump awhile
to make sure any residual water vapor is gone.

Phil

} One nice thing about having interested students is that they do not
} hesitate to ask questions that I have never thought much about.
}
}
} The latest one came up while demonstrating the coaters in the lab. A
} student asked what to use to clean them and how often. I answered
} that I usually use a little water, maybe some detergent or a special
} solution that makes it easier to clean with water. How often was
} less clear, I have seen labs where bell jars etc are cleaned after
} each use and labs where it doesn't look like the glass has ever been
} cleaned.
}
} What is your advice and experience?
}
}
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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5, 29 -- X-Canit-Stats-ID: 02Esht8w7 - d4092663b4cc - 20110406
5, 29 -- X-Scanned-By: CanIt (www . roaringpenguin . com) on 141.209.20.25
==============================End of - Headers==============================




From: jehrman-at-mta.ca
Date: Wed, 6 Apr 2011 12:39:24 -0500
Subject: [Microscopy] To clean or not to clean bell jar

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Phil,

Bon Ami, eh? Have you had any problems with this in terms of getting
carbon films to float off mica? I recall years ago trying various things
to make bell jars easier to clean. Some really worked, but I often had
problems getting films to float off after using them, even with long
periods of time elapsed between cleaning and film preparation. Since
then I've only used a tiny bit of levigated alumina, spread onto a
coarse paper towel moistened with a bit of ethanol. But it takes a lot
of scrubbing to get the bell jar and bottom of the evaporator clean. If
Bon Ami does the job, and still lets films float off, I'd be "high
vacuum happy".

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

I doubt therefore I might be.




On 06/04/2011 2:29 PM, oshel1pe-at-cmich.edu wrote:
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Jon,
}
} I use Bon Ami and clean when it looks like it needs it.
} Nice and precise, yes?
} If I know I'm going to need a Wonderful Perfect Must Be High
} Resolution coat, I'll clean at least the day before and pump awhile
} to make sure any residual water vapor is gone.
}
} Phil
}
} } One nice thing about having interested students is that they do not
} } hesitate to ask questions that I have never thought much about.
} }
} }
} } The latest one came up while demonstrating the coaters in the lab. A
} } student asked what to use to clean them and how often. I answered
} } that I usually use a little water, maybe some detergent or a special
} } solution that makes it easier to clean with water. How often was
} } less clear, I have seen labs where bell jars etc are cleaned after
} } each use and labs where it doesn't look like the glass has ever been
} } cleaned.
} }
} } What is your advice and experience?
} }
} }
} }
} } Jonathan Krupp
} } Delta College
} } 5151Pacific Ave.
} } Stockton, CA 95207
} } 209-954-5284
} } jkrupp-at-deltacollege.edu



==============================Original Headers==============================
13, 21 -- From jehrman-at-mta.ca Wed Apr 6 12:39:23 2011
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From: DusevichV-at-umkc.edu
Date: Wed, 6 Apr 2011 13:18:09 -0500
Subject: [Microscopy] RE: To clean or not to clean bell jar

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

For sputter coater with rotary pump (which I use for magnifications not higher than 100k) I coat bell jar with a layer of soap. When jar is clean, I put some liquid soap (without moisturizer) on a wet piece of paper towel and wipe a jar. Then wipe it with a dry paper towel. For a few months (3-12) afterwards, I can easily remove a layer of metal just wiping it out with a piece of the dry paper towel; easy, fast and can be done in a few seconds.

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} -----Original Message-----
} From: jehrman-at-mta.ca [mailto:jehrman-at-mta.ca]
} Sent: Wednesday, April 06, 2011 12:40 PM
} To: Dusevich, Vladimir
} Subject: [Microscopy] To clean or not to clean bell jar
}
}
}
}
} -----------------------------------------------------------------------
} -----
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
} To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} -----------------------------------------------------------------------
} -----
}
} Phil,
}
} Bon Ami, eh? Have you had any problems with this in terms of getting
} carbon films to float off mica? I recall years ago trying various
} things
} to make bell jars easier to clean. Some really worked, but I often had
} problems getting films to float off after using them, even with long
} periods of time elapsed between cleaning and film preparation. Since
} then I've only used a tiny bit of levigated alumina, spread onto a
} coarse paper towel moistened with a bit of ethanol. But it takes a lot
} of scrubbing to get the bell jar and bottom of the evaporator clean. If
} Bon Ami does the job, and still lets films float off, I'd be "high
} vacuum happy".
}
} Jim
}
} --
}
} James M. Ehrman
} Digital Microscopy Facility
} Mount Allison University
} 63B York St.
} Sackville, NB E4L 1G7
} CANADA
}
} phone: 506-364-2519
} fax: 506-364-2505
} email: jehrman-at-mta.ca
} www: http://www.mta.ca/dmf
}
} I doubt therefore I might be.
}
}
}
}
} On 06/04/2011 2:29 PM, oshel1pe-at-cmich.edu wrote:
} }
} }
} } ---------------------------------------------------------------------
} -------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
} } To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ---------------------------------------------------------------------
} -------
} }
} } Jon,
} }
} } I use Bon Ami and clean when it looks like it needs it.
} } Nice and precise, yes?
} } If I know I'm going to need a Wonderful Perfect Must Be High
} } Resolution coat, I'll clean at least the day before and pump awhile
} } to make sure any residual water vapor is gone.
} }
} } Phil
} }
} } } One nice thing about having interested students is that they do not
} } } hesitate to ask questions that I have never thought much about.
} } }
} } }
} } } The latest one came up while demonstrating the coaters in the lab. A
} } } student asked what to use to clean them and how often. I answered
} } } that I usually use a little water, maybe some detergent or a special
} } } solution that makes it easier to clean with water. How often was
} } } less clear, I have seen labs where bell jars etc are cleaned after
} } } each use and labs where it doesn't look like the glass has ever been
} } } cleaned.
} } }
} } } What is your advice and experience?
} } }
} } }
} } }
} } } Jonathan Krupp
} } } Delta College
} } } 5151Pacific Ave.
} } } Stockton, CA 95207
} } } 209-954-5284
} } } jkrupp-at-deltacollege.edu
}
}
}
} ==============================Original
} Headers==============================
} 13, 21 -- From jehrman-at-mta.ca Wed Apr 6 12:39:23 2011
} 13, 21 -- Received: from smtpx.mta.ca (smtpx.mta.ca [138.73.1.4])
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} 0500
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} 0300
} 13, 21 -- Message-ID: {4D9CA548.3030300-at-mta.ca}
} 13, 21 -- Date: Wed, 06 Apr 2011 14:39:20 -0300
} 13, 21 -- From: James Ehrman {jehrman-at-mta.ca}
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} 13, 21 -- Subject: Re: [Microscopy] Re: To clean or not to clean bell
} jar
} 13, 21 -- References: {201104061729.p36HTSL9019086-at-ns.microscopy.com}
} 13, 21 -- In-Reply-To: {201104061729.p36HTSL9019086-at-ns.microscopy.com}
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} Headers==============================


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From: bozzola-at-siu.edu
Date: Wed, 6 Apr 2011 13:27:15 -0500
Subject: [Microscopy] Re: To clean or not to clean bell jar

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jon,

For high vacuum evaporators: A dirty bell jar slows down pumping and
potentially could contaminate specimens if you are doing high
resolution work. We shield our electrodes as much as possible, so
non-essential coating does not end up on the entire bell jar. That
way, we only have to clean the small area surrounding the electrodes.

We clean the entire bell jar maybe 4 times a year. We do coat the
inside of the jar with Bell Bright, a detergent, that makes cleaning a
simple task.

You could fashion shields from something like aluminum foil -- just be
very careful not to contact any of the electrical feeds -- and then
discard the foil.

For sputter coaters: We clean the glass containment vessel after each
use. It's quick and easy, compared to the high vac system.

JB

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


On Wed, Apr 6, 2011 at 12:18 PM, {jkrupp-at-deltacollege.edu} wrote:
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
} To  Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} One nice thing about having interested students is that they do not hesitate to ask questions that I have never thought much about.
}
}
} The latest one came up while demonstrating the coaters in the lab. A student asked what to use to clean them and how often. I answered that I usually use a little water, maybe some detergent or a special solution that makes it easier to clean with water. How often was less clear, I have seen labs where bell jars etc are cleaned after each use and labs where it doesn't look like the glass has ever been cleaned.
}
} What is your advice and experience?
}
}
}
} Jonathan Krupp
} Delta College


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From: bozhilov-at-ucr.edu
Date: Wed, 6 Apr 2011 17:32:51 -0500
Subject: [Microscopy] SCSMM meeting April 16th, 2011

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The Southern California Society for Microscopy and Microanalysis (SCSMM) will hold its annual full day meeting on Saturday, April 16th at the South Coast Winery & Spa facilities in Temecula, CA.

For further details, contact info, and full agenda please visit the SCSMM web site: http://www.scsmm.org/

Registration deadline: 5 p.m. PST, Friday, April 8th, 2011


//////////////////////////////////////////////////////////////////////////////////////////////////////////////
Krassimir Bozhilov
Central Facility for Advanced Microscopy and Microanalysis
University of California,
Riverside, CA 92521

phone 951 827 2998
fax 951 827 2489





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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 6 Apr 2011 20:22:25 -0500
Subject: [Microscopy] viaWWW:used holder for Philips CM200UT

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Email: kvit-at-wisc.edu Name: Alexander Kvit

Organization: MSC, UW-Madison

Title-Subject: [Filtered] used holder for Philips CM200UT

Message: Hi, We are going to buy used double-tilt holder for Philips
CM200UT microscope. Does somebody has it on a shelf? Do you know
somebody who has it? We appreciate you for following this message to
proper person.

Best regards,
Alex

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 6 Apr 2011 20:23:02 -0500
Subject: [Microscopy] viaWWW:Chinese microscope marked Model L-201

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Email: dchristmass-at-yahoo.com Name: David

Title-Subject: [Filtered] Microscope

Message: Can anyone assist with supplying a manual and brochures for a
Chinese microscope marked Model L-201

Details available here

http://groups.google.com/group/L-201/web/information

TQ

David

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From: nizets2-at-yahoo.com
Date: Thu, 7 Apr 2011 04:02:31 -0500
Subject: [Microscopy] IF problem: summary

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear invaluable listers,

A big thanks to all who offered their help for my IF problem.
Because it may well help someone else in the future I will make a summary of the
advices given to me.
As a reminder I was trying to label a membrane-bound protein in IF and already
tried 4% PFA +/- 0,01% triton X-100 without success.

1) Replace triton x-100 with saponin
2) Fix with methanol or methanol/acetone
3) Use antigen retrieval methods
4) Do no permeabilization (since its membrane-bound)
5) try to fix cell extracts with PFA for ELISA (since the antigen can be
detected by ELISA with cell extracts) to see if PFA has an influence on the
antigen recognition.
6) try other antibodies, consensus is to buy polyclonals.

I tried methanol/acetone fixation (-20°C) and I tried to directly label live
cells at 37°C or at 4°C (to inhibit a possible turn-over of the antigen). I
never got the faintest signal. I really think that the antibody is not able to
recognize the antigen in these conditions.
Since the labeling was just an additional method to reinforce previous results
(with ELISA) I won't spend more time, efforts and money on it except perhaps buy
applying antigen retrieval methods.

Final Score: Nature:1 Stephane:0
I lost this battle, but the struggle for knowledge goes on...

Stephane



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8, 34 -- Date: Thu, 7 Apr 2011 02:02:28 -0700 (PDT)
8, 34 -- From: Stephane Nizet {nizets2-at-yahoo.com}
8, 34 -- Subject: IF problem: summary
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From: greggps-at-umich.edu
Date: Thu, 7 Apr 2011 08:43:40 -0500
Subject: [Microscopy] Seeking vendor to supply objective lenses for 160mm tube length

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

It seems that a primary source for objective lenses to fit 160mm tube length microscopes has dried-up. Can you help me out of a tight spot?

We have need for a matched set of four, 40x objectives for some Leica DMIL microscopes used for teaching. Our current 40x objectives are corrected for 1.1mm culture plates, while modern culture dishes are down to 0.63mm thickness. Does anyone know of any sources for such objectives? Our primary need is for GFP fluorescence detection, but phase contrast would be nice.

Thanks for any advice you can offer. I need an answer about this SOON! We have budget for lenses, but not for four new microscopes.

Regards,
~Gregg

Gregg Sobocinski
Microscope Imaging Specialist
University of Michigan
Molecular, Cellular, and Developmental Biology
Ann Arbor, Michigan
USA



==============================Original Headers==============================
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7, 27 -- From: "Sobocinski, Gregg" {greggps-at-umich.edu}
7, 27 -- To: "'microscopy-at-microscopy.com'" {microscopy-at-microscopy.com}
7, 27 -- Date: Thu, 7 Apr 2011 09:43:39 -0400
7, 27 -- Subject: Seeking vendor to supply objective lenses for 160mm tube length
7, 27 -- microscopes.
7, 27 -- Thread-Topic: Seeking vendor to supply objective lenses for 160mm tube
7, 27 -- length microscopes.
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From: vray-at-partbeamsystech.com
Date: Thu, 7 Apr 2011 13:25:04 -0500
Subject: [Microscopy] Re: Seeking vendor to supply objective lenses for 160mm

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Gregg,

Try to contact LOMO USA - they sell objectives for 160mm tube
microscopes, but I am not sure either they offer objectives specifically
corrected for culture dish thickness or not.

http://www.lomoamerica.com/OEMDataPage.htm

Good luck!

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 4/7/2011 9:44 AM, greggps-at-umich.edu wrote:
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} It seems that a primary source for objective lenses to fit 160mm tube length microscopes has dried-up. Can you help me out of a tight spot?
}
} We have need for a matched set of four, 40x objectives for some Leica DMIL microscopes used for teaching. Our current 40x objectives are corrected for 1.1mm culture plates, while modern culture dishes are down to 0.63mm thickness. Does anyone know of any sources for such objectives? Our primary need is for GFP fluorescence detection, but phase contrast would be nice.
}
} Thanks for any advice you can offer. I need an answer about this SOON! We have budget for lenses, but not for four new microscopes.
}
} Regards,
} ~Gregg
}
} Gregg Sobocinski
} Microscope Imaging Specialist
} University of Michigan
} Molecular, Cellular, and Developmental Biology
} Ann Arbor, Michigan
} USA
}
}
}
} ==============================Original Headers==============================
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} 7, 27 -- Date: Thu, 7 Apr 2011 09:43:39 -0400
} 7, 27 -- Subject: Seeking vendor to supply objective lenses for 160mm tube length
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} 7, 27 -- Thread-Topic: Seeking vendor to supply objective lenses for 160mm tube
} 7, 27 -- length microscopes.
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From: William.F.Tivol-at-aero.org
Date: 04/05/2011 11:36 AM
Subject: [Microscopy] Job Description Help

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Prof Mashore,
It is possible that someone who has only completed a good
microscopy course could fill the position, but there is a great deal of
work and responsibility connected with it, and you will probably get only
what you pay for. I would advertise for a Core Director, look for someone
with a PhD in an appropriate field, and be willing to pay accordingly. You
will want someone who will stay on the job for as long a time as possible,
so make the salary, benefits, etc. as good as possible, and you might also
think about hiring an assistant for the director if the work is too much
for one person. Good luck.
Yours,
Bill



X-from: mmashore-at-vapop.ucsd.edu
To: William.F.Tivol-at-aero.org






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Dear all,

I was hoping to get some expert advice about a job description. I have
included the job description below. I would like receive feedback as to
what
a person who fulfills these responsibilities would be hired at (i.e. Core
Director, Core Manager, Research Associate 1, etc.). I would also like to
know what you would consider the highest level of education you think
would
be needed for this position. I realize the job description is quite long,
but I appreciate any feedback.

Thank You.

Essential Duties and Responsibilities

1. Preparation of specimens such as paraffin, EM, hard
tissue embedding
and embedding frozen tissue in OCT compound.
2. EM, hard tissue, paraffin and frozen (cryosectioning)
tissue
sectioning.
3. Operate a Zeiss 10 Transmission Electron Microscope and
Gatan 785
Digital Imaging system.
4. Operate a Zeiss LSM 510 and Pascal Confocal Microscope.
5. Operate a Zeiss Axio Observer, 21 Inverted Microscope
with FRET,
transmitted brightfield, DTC and Epi-fluorescence capabilities.
6. Requisitioning and Ordering supplies.
7. Maintains Equipment/supplies/Facilities: Maintains the
laboratory
facilities and equipment and controls supplies. Ensures that a sufficient
supply of reagents, standards and controls are available at all times by
ordering an adequate supply from commercial sources or preparing variety
of
specialized solutions or reagents. Using established procedures,
calibrates,
controls, and maintains a variety of instrumentation and laboratory
equipment. When calibrations fall outside the acceptable limits, incumbent
uses independent judgment in adjusting either the procedure or the
mechanical device used in the determination to bring the procedures into
good quality control. Plus general lab cleaning.
8. Customer Services: In accordance with Service procedures,
answers
the phone promptly in a courteous manner, identifying self and service.
Similarly, outgoing calls are handled appropriately and politely. Valid
complaints about failure to do so are not normally received by his/her
supervisor. Shows positive evidence of a helpful attitude to other staff,
visitors and clients through such actions as a consistent display of
courtesy. Success in the area is measured by observation plus evaluation
of
any valid complaints and or commendations received during the rating
period.
Promotes attitude and procedures that foster both internal and external
customer satisfaction.
9. Security: Incumbent is responsible for maintaining
security of
information in computerized systems in accordance with medial center
policy:
the Privacy Act; and other applicable laws, rules, regulations, and
policies.
10. Safety: Inspect laboratory space for safe conditions and
conformance
to safety procedure.
11. Prepare core facilities invoices for jobs completed.


==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 7 Apr 2011 20:40:59 -0500
Subject: [Microscopy] viaWWW:LED as alternative lightsource to halogen

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Email: michael.cammer-at-med.nyu.edu Name: Michael Cammer

Organization: Skirball/NYU

Title-Subject: [Filtered] LED as alternative lightsource to halogen

Message: We have a Olympus IX70. To fit an external filter wheel, we
had to put the 'scope up on bricks. This has bumped the top of the
pillar up against the bottom of a utility shelf above the table which
has led to the problem of not enough clearance for cooling the hot
halogen bulb. I'm thinking of replacing this bulb with one to four LEDs
(we don't need a lot of light for transmittance). Has anyone experience
rewiring the stable power supply in the microscope body, perhaps by
putting resistors in the wiring? Alternatively, by rewiring a shutter
to turn on/off an LED instead of opening/closing a physical shutter?

(I thought of using a battery for power, but for overnight experiments
we'd run though a lot of batteries unless someone wants to make an
on/off serial port controlled switch for us.)

Thanks!
________________________________________________________
Michael Cammer, Assistant Research Scientist
Skirball Institute of Biomolecular Medicine
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 7 Apr 2011 20:41:26 -0500
Subject: [Microscopy] viaWWW:Black wax

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Email: MLibbee-at-gmail.com Name: Marissa Libbee

Organization: LBNL

Title-Subject: [Filtered] Black wax

Message: Can anyone tell me about black wax and where to get it? A
microscopist suggested that this wax is cleanly removed with acetone,
even more so than Crystalbond 509?

Thanks,
Marissa
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 7 Apr 2011 20:41:53 -0500
Subject: [Microscopy] viaWWW:Philips 505 SEM, High Tension (kV)

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Email: gul417-at-mail.usask.ca Name: Guosheng Liu

Organization: U of Saskatchewan

Title-Subject: [Filtered] Philips 505 SEM, High Tension (kV)
fluctuation problem
Message: Hello,

There is an old SEM (Philips 505) in our lab that has
worked fine until recently: the 3-digit numbers on the HT (kV) display
fluctuate/jump in a range of plus/minus 3 at the setting of 20kV, more
dramatically at lower settings.
I am looking for your advice as to what likely causes this and where I
should start to check? HT generator, vacuum or electronic board?

[Plus, this morning the HT was automatically shut-down during the normal
operation (setting at 30kV--max in our SEM). Restart appears OK].

Your help is much appreciated!

Guosheng Liu
U of S
Saskatoon, Canada

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From: vray-at-partbeamsystech.com
Date: Thu, 7 Apr 2011 22:31:23 -0500
Subject: [Microscopy] Re: viaWWW:Black wax

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Marissa,

I am not aware of "black wax", but suspecting that maybe what you are
looking for is "Black Nail Polish", sold by Ted Pella, Product Number 114-8

http://www.tedpella.com/section_html/section1.htm

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 4/7/2011 9:45 PM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Email: MLibbee-at-gmail.com Name: Marissa Libbee
}
} Organization: LBNL
}
} Title-Subject: [Filtered] Black wax
}
} Message: Can anyone tell me about black wax and where to get it? A
} microscopist suggested that this wax is cleanly removed with acetone,
} even more so than Crystalbond 509?
}
} Thanks,
} Marissa
} Login Host: 131.243.3.226
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From: protrain-at-emcourses.com
Date: Fri, 8 Apr 2011 05:11:00 -0500
Subject: [Microscopy] RE: viaWWW:Philips 505 SEM, High Tension (kV)

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Hi

Whilst the fluctuating numbers may indicate a problem I would be more
interested in what is happening to the image? With such a fluctuation I
would expect the focus to change considerably during observation? Focus an
image at a around 10,000 to 20,000X and record the image; does the focus
change?

Answering that question as YES then you are rightly worried about the high
voltage generating system. If the answer is NO carry on and take no notice
of a flickering indicator.

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com

............................................................................
...................................

Email: gul417-at-mail.usask.ca Name: Guosheng Liu

Organization: U of Saskatchewan

Title-Subject: [Filtered] Philips 505 SEM, High Tension (kV)
fluctuation problem
Message: Hello,

There is an old SEM (Philips 505) in our lab that has
worked fine until recently: the 3-digit numbers on the HT (kV) display
fluctuate/jump in a range of plus/minus 3 at the setting of 20kV, more
dramatically at lower settings.
I am looking for your advice as to what likely causes this and where I
should start to check? HT generator, vacuum or electronic board?

[Plus, this morning the HT was automatically shut-down during the normal
operation (setting at 30kV--max in our SEM). Restart appears OK].

Your help is much appreciated!

Guosheng Liu
U of S
Saskatoon, Canada

Login Host: 128.233.123.49
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From: cpawlowicz-at-ubmtechinsights.com
Date: Fri, 8 Apr 2011 10:00:32 -0500
Subject: [Microscopy] RE: viaWWW:Black wax

Contents Retrieved from Microscopy Listserver Archives
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Marissa,

In 1976 I started in a lab that had some sticks of black wax in the cabinet. I never used it but thought that it was possibly used to seal vacuum leaks. I remember that they were very hard and not what I would consider wax like. It had an orange label on it and I think it may have been Apizion or something similar to that printed on it. I think it may have come from Thomas or VWR as they supplied a lot of the things that I inherited there.

If they have not contacted you in response to your posting, I'd suggest you phone or email one of the EM product suppliers like SPI, Electron Microscopy Sciences, Ted Pella to name a few for they all have a vast knowledge of products that are currently available.

You might wish to post what you want to accomplish by using the black wax so we can make suggestions or go back to the person who suggested it to you and ask for the supplier information that he may have.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.

________________________________
X-from: {vray-at-partbeamsystech.com}
Reply-To: {vray-at-partbeamsystech.com}


Marissa,

We buy black wax from SPI supplies (http://www.2spi.com) and it is indeed made by Apiezon
http://www.2spi.com/catalog/vac/apiezon/

We find it more robust in certain applications than the regular crystal bond clear wax (resistant to acids for instance).


Chris Pawlowicz, B.Eng
Manager, Lab Development
UBM TechInsights
3000 Solandt Rd Ottawa ON Canada K2K 2X2
T: +1 613 576 0150
F: +1 613 599 6501
E: cpawlowicz-at-ubmtechinsights.com


--------
Title-Subject: [Filtered] Black wax

Message: Can anyone tell me about black wax and where to get it? A microscopist suggested that this wax is cleanly removed with acetone, even more so than Crystalbond 509?

Thanks,
Marissa
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From: henriks-at-cox.net
Date: Fri, 8 Apr 2011 10:10:29 -0500
Subject: [Microscopy] viaWWW:Black wax

Contents Retrieved from Microscopy Listserver Archives
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Marissa:

South Bay Technology offers black wax which is designed for use as a masking
material in jet polishing applications. As it is chemically inert, it is
resistant to etching solutions such as hydrofluoric acid, nitric acid,
perchloric acid and acetic acid. While it is resistant to many acids, it
can be easily removed with hydrocarbon or chlorinated solvents. Black wax
softens at 85oC and flows at 100oC.

By far, the most common of our wax materials used in sample preparation is
our acetone soluble QuickStick 135. However, we do have several wax
products which enable you to select the best mix of solubility, melting
point, hardness etc. for your application. We do send out sample packages of
the various wax products so we'd be happy to send you one so you can try
them out. Be sure to specify that you want to try the black wax as well as
I don't think it is included with the normal sample pack.

I hope that helps.

Best regards-

David

David Henriks

South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673 USA

tel: +1-949-492-2600
fax: +1-949-492-1499

email: HenriksSBT-at-cox.net

www.southbaytech.com

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Email: MLibbee-at-gmail.com Name: Marissa Libbee

Organization: LBNL

Title-Subject: [Filtered] Black wax

Message: Can anyone tell me about black wax and where to get it? A
microscopist suggested that this wax is cleanly removed with acetone,
even more so than Crystalbond 509?

Thanks,
Marissa
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From: Bryan.Tracy-at-spansion.com
Date: Fri, 8 Apr 2011 17:55:45 -0500
Subject: [Microscopy] Gatan 794 CCD controller - spare

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Friends


Hoping someone may have solution to our Gatan 794 controller problem.
We can not acquire a proper gain reference image - it returns a banded image.

Our unit is in Warrendale for repair and we will be getting it back shortly.
However, the controller is now officially out of production and not for sale.
This kind of makes me nervous, because it puts down our JEOL 2010 which we use in production.

Sure would like buy a spare unit

Any leads? Thanks so much for your help!

bryan tracy
Spansion, Sunnyvale


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 8 Apr 2011 19:10:34 -0500
Subject: [Microscopy] viaWWW:Assistant or Associate Director Position Available

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Email: frohlich-at-uthscsa.edu Name: Victoria Frohlich

Organization: UTHSCSA

Title-Subject: [Filtered] Assistant or Associate Director Position Available

Message: Assistant or Associate Professor of Research

The University of Texas Health Science Center at San Antonio is seeking
applications for a faculty position at the rank of Assistant or
Associate Professor of Research in the Department of Cellular &
Structural Biology, who will serve as the Assistant / Associate Director
of the Core Optical Imaging Facility. The Core Optical Imaging Facility
houses state-of-the-art equipment and includes confocal laser scanning
microscopy, multiphoton microscopy, total internal reflection
microscopy, super-optical resolution microscopy as well as widefield and
dissecting fluorescent microscopes. This position will direct,
coordinate, supervise, and participate in all aspects of the daily
operation of the imaging core. Responsibilities include management of
technical personnel, oversight of daily core facility operations,
development, operation and maintenance of specialized optical imaging
equipment resident in the core facility, as well as develop budgets and
oversee monthly billing. The Assistant/Associate Director will be
involved in training clients to use instrumentation resident in the
imaging core as well as consulting with clients on the design and
specimen preparation techniques for experiments involving imaging core
activities. In addition, the Assistant/Associate Director will assist
in writing grants directly impacting core activities or in writing
technical portions of papers and be responsible for collecting and
compiling of data on core usage for the purpose of reporting on core
activities to university and/or government agencies.
A PhD in an appropriate scientific field with 3-5 post-degree years of
relevant and productive work experience is required. Demonstrated
excellence in the management of a light microscopy shared resource and
in continuing education in advanced light microscopy techniques are
preferred.

To apply, please forward a curriculum vitae electronically to
facsearchcsb-at-uthscsa.edu. Alternatively, applications may be mailed to:
Faculty Search Committee; Department of Cellular & Structural Biology,
The University of Texas Health Science Center at San Antonio, 7703 Floyd
Curl Drive, San Antonio, TX 78229-3900. Initial review of applications
will begin immediately and will remain open until the position is filled.
Salary and rank are commensurate with experience. All faculty
appointments are designated as security sensitive positions. The
University of Texas Health Science Center at San Antonio is an Equal
Employment Opportunity/Affirmative Action Employer.



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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 8 Apr 2011 19:11:13 -0500
Subject: [Microscopy] viaWWW:LED as an alternative lightsource to halogen

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Email: aleb-at-nhm.ac.uk Name: Alex Ball

Organization: The Natural history Museum, London

Title-Subject: [Filtered] LED as an alternative lightsource to halogen

Message: Hi Michael,

We've recently replaced the mercury vapour lamp on our Leica confocal
microscope with an LED system manufactured by CoolLED. In our
application we've fitted fluorescence LEDs, but I'm sure they could fit
white light modules as well. The system was easy to install and set up
and of course, as it says - cool! I'd check them out and see if they
offer anything that could solve your problem.
http://www.coolled.com/Life-Sciences-Analytical/

Regards,

Alex Ball

Dr Alex Ball
Electron Microscope Unit Manager
The Natural History Museum
London SW7 5BD

Tel: 0207 942 5263
Fax: 0207 942 5811
http://www.nhm.ac.uk/research-curation/science-facilities/index.html


Title-Subject: [Filtered] LED as alternative lightsource to halogen

Message: We have a Olympus IX70. To fit an external filter wheel, we
had to put the 'scope up on bricks. This has bumped the top of the
pillar up against the bottom of a utility shelf above the table which
has led to the problem of not enough clearance for cooling the hot
halogen bulb. I'm thinking of replacing this bulb with one to four LEDs
(we don't need a lot of light for transmittance). Has anyone experience
rewiring the stable power supply in the microscope body, perhaps by
putting resistors in the wiring? Alternatively, by rewiring a shutter
to turn on/off an LED instead of opening/closing a physical shutter?

(I thought of using a battery for power, but for overnight experiments
we'd run though a lot of batteries unless someone wants to make an
on/off serial port controlled switch for us.)

Thanks!
________________________________________________________
Michael Cammer, Assistant Research Scientist
Skirball Institute of Biomolecular Medicine
Lab: (212) 263-3208 Cell: (914) 309-3270

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 8 Apr 2011 19:11:47 -0500
Subject: [Microscopy] viaWWW:NESM SPRING SYMPOSIUM WOODS HOLE - MAY 6, 2011

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Email: brossetti-at-mbl.edu Name: Blair Rossetti

Organization: NESM

Title-Subject: [Filtered] NESM SPRING SYMPOSIUM WOODS HOLE - MAY 6, 2011

Message: NESM SPRING SYMPOSIUM WOODS HOLE, MA - MAY 6, 2011

Hi Microscopy ListServer-ites,

SAVE THE DATE: May 6th
For the upcoming New England Society for Microscopy's
28th Annual Woods Hole, MA Symposium.

May 6 -- NESM Symposium, 10:00AM - 5:00PM

To register by April 27th, please send your name and affiliation to
brossetti-at-mbl.edu

Registration Costs (including lunch and an afternoon coffee break):
$65 NESM Members
$90 Nonmembers (includes 2011-year membership)
$30 Students
$50 Retirees
$50 Guests

More details (speakers/titles) to follow in the upcoming April
Newsletter and at the NESM website: http://nesm.cims.harvard.edu/

Student Poster Session:
Students who present posters at a NESM meeting will be automatically
entered to win a prize. Prizes will be announced and awarded on the day
of the NESM meeting.

Bring A Colleague:
NESM members who bring two new members to join during 2011, will receive
free membership for 2012!!!

Thank you for your attention and consideration; and we look forward to
seeing you in
Woods Hole.

Microscopily yours,
Blair Rossetti, NESM Corresponding Secretary

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 9 Apr 2011 07:42:29 -0500
Subject: [Microscopy] viaWWW:TIRF-need help on MetaMorph (Hamamatsu C9100-13 EM CCD, Olympus

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Email: istvan.abraham-at-otago.ac.nz Name: Dr Istvan Abraham

Organization: University of Otago, New Zealand

Title-Subject: [Filtered] TIRF-need help on MetaMorph (Hamamatsu
C9100-13 EM CCD, Olympus BX-81)


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Message: Dear All,

We are using an Olympus TIRF system mounted on BX-81 microscope with a
new Hamamatsu C9100-13 EM CCD camera for single molecule detection. We
drive the microscope, lasers and camera with help MetaMorph software
under Windows XP. We are streaming all data directly to hard drive
during acquisition in “overlapped mode” to use the “parallel acquisition
and read out” feature of the camera. Unfortunately we cannot achieve the
maximum acq. time (32 ms at binning 1) because the MetaMorph is freezing
at around 60 ms or shorter acq.. We observed this phenomenon after
700-8000 frames. The number of acquired frames are randomly varied and
did not depend on the actual settings or experimental conditions.
Interestingly, we also received error messages sometimes saying that the
software cannot handle the images because of “insufficient memory”.
However the 4 GB RAM does not reach the 20% of its capacity during
acquisition and streaming. Furthermore, we have 1 TB SAS HDs in RAID 10
configuration with powerful frame grabber in our server PC (designed to
the TIRF measurement) that enables us huge writing speed and big space
for our images (513 KB each).

Our situation is difficult because the New Zealand distributor,
Bio-Strategy (XXXXXXXXXX-names omitted), does not seem to have an expert
on board and they also (XXXXXXXX - Word changed) (declined) to give any
onsite support for the MetaMorph. We received some support from US
(Molecular Devices (MD)) via Webinar sessions but they were mainly
ineffective in solving this “freezing” issue. Worth noting, we also
reported to MD that MetaMorph did not to handle the parallel read out
and acq. feature of Hamamatsu C9100-13 EM CCD. Based on this
observation the MD introduced the “overlapped mode” in the MetaMoprh
software to use the parallel readout feature of this camera.

As it looks now, however, MD lost its interest in working further on
MetaMorph to make it really compatible with Hamamatsu C9100-13 EM CCD
camera. However we would like to achieve the 32 ms acq. time with this
camera because it is essential for our single molecule detection
experiments.

We highly appreciate any idea or help on this subject.

Many thanks
Istvan

Istvan Abraham MD, PhD
Centre for Neuroendocrinology & Dept. of Physiology
University of Otago,
Lindo Ferguson Building, 270 Great King street, PoBOX 913 9054, Dunedin,
New Zealand
T:64 3 479 4862
F:64 3 479 7323
http://phsl.otago.ac.nz/abraham/index.html


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From: Edward.Calomeni-at-osumc.edu
Date: Mon, 11 Apr 2011 06:58:18 -0500
Subject: [Microscopy] Gatan 794 CCD controller - spare

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Bryan,

Had a similar problem with the Olympus-SIS digital camera. One problem might the operating system, have you upgraded to Windows 7? In my case it was the firewire card that went bad, replaced it and all is fine now.

Ed



-----Original Message-----
X-from: Bryan.Tracy-at-spansion.com [mailto:Bryan.Tracy-at-spansion.com]
Sent: Friday, April 08, 2011 7:03 PM
To: Calomeni, Edward

Hi Friends


Hoping someone may have solution to our Gatan 794 controller problem.
We can not acquire a proper gain reference image - it returns a banded image.

Our unit is in Warrendale for repair and we will be getting it back shortly.
However, the controller is now officially out of production and not for sale.
This kind of makes me nervous, because it puts down our JEOL 2010 which we use in production.

Sure would like buy a spare unit

Any leads? Thanks so much for your help!

bryan tracy
Spansion, Sunnyvale


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From: david.knecht-at-uconn.edu
Date: Mon, 11 Apr 2011 09:22:01 -0500
Subject: [Microscopy] Stuck Zeiss objective

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We have a 63x Plan Apo Zeiss objective that has been on an inverted microscope for years. I noticed the other day that the barrel no longer moves and I am pretty sure it was at one time spring loaded. Presumably crud has gotten inside and frozen the mechanism. I tried removing the small set screw on the side of the barrel to see if I could remove the casing and get at the mechanism and hopefully free it but the casing did not come off easily. I presume that I should not add lubricant/penetrant between the inner and outer barrel to free it. I could use my strap wrench to try to free the casing. Any suggestions?

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: Josef.Zweck-at-physik.uni-regensburg.de
Date: Mon, 11 Apr 2011 09:37:33 -0500
Subject: [Microscopy] Gatan DuoMill parts

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Hi all,

I still have a number of Gatan DuoMill spare parts in my lab, which I am about to throw out. Several specimen tables, O-rings, flanges, HV connectors etc.

If anyone is interested in it, I would just put (throw, to be precisely) everything in a box and send it to whoever wants it. I would not pay for special air freight, customs fees etc.

Please let me know within one week if you are interested - Joe Zweck



==============================Original Headers==============================
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From: david.knecht-at-uconn.edu
Date: Mon, 11 Apr 2011 09:55:24 -0500
Subject: [Microscopy] Re: Stuck Zeiss objective

Contents Retrieved from Microscopy Listserver Archives
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1.4 NA and no correction collar on this one. Dave

On Apr 11, 2011, at 10:46 AM, Mark, William wrote:

} David,
}
} You might try xylene (just a little bit) or Goofoff and a strap wrench.
} I believe that this objective has a collar for coverslip thickness, no?
}
} Bill
}
} -----Original Message-----
} From: david.knecht-at-uconn.edu [mailto:david.knecht-at-uconn.edu]
} Sent: Monday, April 11, 2011 10:30 AM
} To: Mark, William
} Subject: [Microscopy] Stuck Zeiss objective
}
}
}
}
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}
} We have a 63x Plan Apo Zeiss objective that has been on an inverted
} microscope for years. I noticed the other day that the barrel no longer
} moves and I am pretty sure it was at one time spring loaded. Presumably
} crud has gotten inside and frozen the mechanism. I tried removing the
} small set screw on the side of the barrel to see if I could remove the
} casing and get at the mechanism and hopefully free it but the casing did
} not come off easily. I presume that I should not add
} lubricant/penetrant between the inner and outer barrel to free it. I
} could use my strap wrench to try to free the casing. Any suggestions?
}
} Dr. David Knecht
} Department of Molecular and Cell Biology
} Co-head Flow Cytometry and Confocal Microscopy Facility
} U-3125
} 91 N. Eagleville Rd.
} University of Connecticut
} Storrs, CT 06269
} 860-486-2200
} 860-486-4331 (fax)
}
}
}
}
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Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)



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From: david.knecht-at-uconn.edu
Date: Mon, 11 Apr 2011 10:40:19 -0500
Subject: [Microscopy] Phase contrast again- diffraction vs. refraction

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I was rereading the section of MicroscopyU on Phase contrast microscopy, and one aspect of it confused me (again). I usually explain the contrast as a measure of refractive index differences between parts of the cell and the surrounding medium. The refractive index differences lead to differences in optical path length which leads to waves being out of phase. But changes in refractive index also deviates the light. MicrosopyU calls the deviated wave in phase the diffracted wave, but then proceeds to lay out the math in terms of refractive index. So what is the correct way to say this? Is it that the differences in the refractive index of the medium through which the diffracted light passes that changes the optical path length? Does deviation by refraction play any role? Thanks- Dave

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: rok210-at-lehigh.edu
Date: Mon, 11 Apr 2011 11:40:16 -0500
Subject: [Microscopy] Re: Phase contrast again- diffraction vs. refraction

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I'm not sure about the official or definitive answer but diffraction
from an aperture edge would happen in the absence of a refractive medium
(such as in a vacuum). Diffraction is where a secondary wave (Huygens'
secondary source) is created by scattering rather than a modification to
a primary wave , which is what I think is called refraction. Diffracted
waves have a stepwise difference in phase from the primary wave - often
90-degrees advanced.

If the refraction of the cell and the medium differ (because of
differences in refractive index and possibly thickness) then there will
be optical path differences that translate directly into phase contrast,
resulting from the recombination of the differently refracted waves.

Diffraction is better known from the X-ray and electron study of
crystals; and in the electron microscope combining diffracted with
non-diffracted beams can deliver atomic resolution (lattice) images.

Good luck with your instruction, but I am not familiar with MicroscopyU.

Rob Keyse
Lehigh University EM Facility

On 4/11/2011 11:49 AM, david.knecht-at-uconn.edu wrote:
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} I was rereading the section of MicroscopyU on Phase contrast microscopy, and one aspect of it confused me (again). I usually explain the contrast as a measure of refractive index differences between parts of the cell and the surrounding medium. The refractive index differences lead to differences in optical path length which leads to waves being out of phase. But changes in refractive index also deviates the light. MicrosopyU calls the deviated wave in phase the diffracted wave, but then proceeds to lay out the math in terms of refractive index. So what is the correct way to say this? Is it that the differences in the refractive index of the medium through which the diffracted light passes that changes the optical path length? Does deviation by refraction play any role? Thanks- Dave
}
} Dr. David Knecht
} Department of Molecular and Cell Biology
} Co-head Flow Cytometry and Confocal Microscopy Facility
} U-3125
} 91 N. Eagleville Rd.
} University of Connecticut
} Storrs, CT 06269
} 860-486-2200
} 860-486-4331 (fax)
}
}

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From: FMonson-at-wcupa.edu
Date: Mon, 11 Apr 2011 12:02:48 -0500
Subject: [Microscopy] Re: Phase contrast again- diffraction vs. refraction

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

F.Zernike, Z. Tech. Phys., 16 (1935), 848; Physica, 9(1942), 686, 97F4. (refs from Born and Wolfe, 7th ed, 'Principles of Optics')

F. Zernike - Nobel Prize Talk: http://nobelprize.org/nobel_prizes/physics/laureates/1953/zernike-lecture.html

Hope this helps,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl
=========================================================================
Abraham Lincoln was perhaps the greatest orator the United States has known since the days of the Founders. Read what he said, then, think and learn.
http://showcase.netins.net/web/creative/lincoln/speeches/lyceum.htm
And, what's a lyceum?
http://dig.lib.niu.edu/ISHS/ishs-1990spring/ishs-1990spring45.pdf
=========================================================================
History is Cyclic. Only the ism's, nouns or adjectives change, AND......, When the objective classroom turns to agenda, history repeats!
=========================================================================
"Pan-Germanism was an achievement of intellectuals and writers. The professors of history, law, economics, political science, geography, and philosophy were its most uncompromising advocates. They converted the students of the universities to their ideas. Very soon the graduates made more converts. As teachers in the field of higher education (in the famous German Gymnasium and educational institutions of the same rank), as lawyers, judges, civil servants, and diplomats they had ample opportunity to serve their cause."

""Soap capital" desires more cleanliness, "building capital" a greater demand for homes, "publishing capital" more and better education, and "armaments capital" bigger armaments. The shortrun interests of every branch of business encourage such attitudes. In the long run, however, increased demand results in an inflow of more capital into the booming branch, and the competition of the new enterprises cuts down the profits."
Ludwig von Mises (http://www.mises.org/etexts/mises/og/chap6.asp)
=========================================================================
Thus, the wise state, looking for the best result, will support research in those endeavors that promise improvements in the 'general welfare'. The 'wise state' will know that one cannot order up the solution to any problem by treating the process of innovation as little more than magic. The 'unwise state' will create chaos. (FCM, 2011)
=========================================================================





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From: William.F.Tivol-at-aero.org
Date: 04/11/2011 08:49 AM
Subject: [Microscopy] Phase contrast again- diffraction vs.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear David,
The two descriptions--refractive index and diffraction--are
equivalent, so it does not matter which description you use. Some people
find the refractive index easier to understand, and others are more
comfortable with the diffraction picture. Regarding your question about
the role of deviation, remember that a lens transfers the light (or
electrons in the EM) from one point in the specimen to one point in the
image, regardless of the direction that the light leaves the specimen (as
long as it is within the solid angle of the lens, of course). The total
path length will depend on the angle of deviation, and this will affect
the phase. In TEM the angles of deviation are very small, so the phase
differences are correspondingly small, and the small-angle approximation
is used, and the differences are ignored. In LM with a lens with high NA,
some of the angles can be large, so some of the light may be sufficiently
out of phase that the contrast is lowered.
Yours,
Bill



X-from: david.knecht-at-uconn.edu
To: William.F.Tivol-at-aero.org







I was rereading the section of MicroscopyU on Phase contrast microscopy,
and one aspect of it confused me (again). I usually explain the contrast
as a measure of refractive index differences between parts of the cell and
the surrounding medium. The refractive index differences lead to
differences in optical path length which leads to waves being out of
phase. But changes in refractive index also deviates the light.
MicrosopyU calls the deviated wave in phase the diffracted wave, but then
proceeds to lay out the math in terms of refractive index. So what is the
correct way to say this? Is it that the differences in the refractive
index of the medium through which the diffracted light passes that changes
the optical path length? Does deviation by refraction play any role?
Thanks- Dave

Dr. David Knecht


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From: germpore-at-sonic.net
Date: Mon, 11 Apr 2011 14:26:30 -0500
Subject: [Microscopy] Re: Phase contrast again- diffraction vs. refraction

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My question might be a bit basic for this list, but since we're on the
subject. I've always had difficulty understanding how phase-contrast
operates in terms of creating the two phases of light. (That way the
two work to create contrast through interference I get.) But how does
one light path for the background, and another sample/refracted light
path off by 1/4 wavelength get created? I've never figured out how the
condenser ring and the objective ring interact to do this.

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From: tina-at-pbrc.hawaii.edu
Date: Mon, 11 Apr 2011 16:41:11 -0500
Subject: [Microscopy] Detecting tissue on surgical burr with SEM/EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, All-

We have a client who is a cardiac surgeon using SEM to look at surgical
burrs. These are diamond-encrusted rotary tips that are threaded up into
the heart to drill out plaque. The current question is how much tissue is
sticking to the burrs and preventing the diamonds from cutting. He
originally wanted to see how much calcified plaque was present, and this
was easy, using EDS to detect the Ca, color it in a map, and then do image
analysis to see how much area was covered. I can't figure out how to look
at non-calcified plaque. It's carbon, as are the diamonds. The adhesive is
Ni and P, on a stainless steel base. Can anyone think of something I can
"stain" the tissue with to be able to detect it with the EDS (this being
easier and faster than identifying and hand selecting with ImageJ)?

Aloha,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

==============================Original Headers==============================
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From: kenconverse-at-qualityimages.biz
Date: Mon, 11 Apr 2011 16:59:19 -0500
Subject: [Microscopy] Detecting tissue on surgical burr with SEM/EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Tina,
I don't really know, but might Os or some of the heavy TEM stains give you
the differentiation you need?

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: tina-at-pbrc.hawaii.edu [mailto:tina-at-pbrc.hawaii.edu]
Sent: Monday, April 11, 2011 5:44 PM
To: kenconverse-at-qualityimages.biz

Hi, All-

We have a client who is a cardiac surgeon using SEM to look at surgical
burrs. These are diamond-encrusted rotary tips that are threaded up into
the heart to drill out plaque. The current question is how much tissue is
sticking to the burrs and preventing the diamonds from cutting. He
originally wanted to see how much calcified plaque was present, and this
was easy, using EDS to detect the Ca, color it in a map, and then do image
analysis to see how much area was covered. I can't figure out how to look
at non-calcified plaque. It's carbon, as are the diamonds. The adhesive is
Ni and P, on a stainless steel base. Can anyone think of something I can
"stain" the tissue with to be able to detect it with the EDS (this being
easier and faster than identifying and hand selecting with ImageJ)?

Aloha,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 11 Apr 2011 19:48:57 -0500
Subject: [Microscopy] viaWWW:Emitech transver valve/spare parts

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
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Email: dhorne-at-interchange.ubc.ca Name: Derrick Horne

Organization: UBC BioImaging Facility

Title-Subject: [Filtered] Emitech transver valve/spare parts

Message: Does anyone have an old Emitech K1250 sitting around,
mothballed and not likely to go back into service? We might be looking
for another transfer device. Feel free to contact me offline.

Derrick

Login Host: 137.82.85.211
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From: jflaci-at-ms.sapientia.ro
Date: Tue, 12 Apr 2011 06:44:24 -0500
Subject: [Microscopy] Cleaning Gatan CCD surface

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all!

We recently discovered (yesterday), that our CCD surface is
contaminated with fluid and solid particles,
the problem is that is affecting image quality.

Any of You can recommend a cleaning procedure for this surface?

Laci

--
Jakab-Farkas Laszlo
Labortechnikus

SAPIENTIA - ERDÉLYI MAGYAR TUDOMÁNYEGYETEM
MÜSZAKI ÉS HUMÁNTUDOMÁNYOK KAR MAROSVÁSÁRHELY
Campus: Segesvári út 1C., Marosvásárhely/Koronka (a város határában)
Tel.: +40-(0)265-206210,+40-(0)265-208170, fax: 0265-206211
Mobil.: +40-(0)745-873844
E-mail: jflaci-at-ms.sapientia.ro
Postacím: 540485 Tîrgu Mures,op 9 cp4.


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From: david.knecht-at-uconn.edu
Date: Tue, 12 Apr 2011 09:02:29 -0500
Subject: [Microscopy] Re: Stuck Zeiss objective

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Those discussions were about removing objectives that were stuck in the turret. That was not a problem here. What is stuck is the spring loaded barrel of the objective. I am trying to find out if putting some penetrant on the barrel will have any chance of getting to the optics. Dave

On Apr 12, 2011, at 3:37 AM, Stephane Nizet wrote:

} Hi David!
}
} This subject has already been discussed on the list in the past. If I remember
} well some suggestions involved the use of oil while others advised against it.
} Using the wrench was an option, provided you use a cloth to avoid scraping the
} surface and help distribute the pressure on the cylinder.
} There were also suggestions to use prevention. I would suggest you search the
} archives of the list.
}
} Best regards,
}
} Stephane
}
}
}
} ----- Original Message ----
} From: "david.knecht-at-uconn.edu" {david.knecht-at-uconn.edu}
} To: nizets2-at-yahoo.com
} Sent: Mon, April 11, 2011 4:26:17 PM
} Subject: [Microscopy] Stuck Zeiss objective
}
}
}
}
} ----------------------------------------------------------------------------
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}
} We have a 63x Plan Apo Zeiss objective that has been on an inverted microscope
} for years. I noticed the other day that the barrel no longer moves and I am
} pretty sure it was at one time spring loaded. Presumably crud has gotten inside
} and frozen the mechanism. I tried removing the small set screw on the side of
} the barrel to see if I could remove the casing and get at the mechanism and
} hopefully free it but the casing did not come off easily. I presume that I
} should not add lubricant/penetrant between the inner and outer barrel to free
} it. I could use my strap wrench to try to free the casing. Any suggestions?
}
}
} Dr. David Knecht
} Department of Molecular and Cell Biology
} Co-head Flow Cytometry and Confocal Microscopy Facility
} U-3125
} 91 N. Eagleville Rd.
} University of Connecticut
} Storrs, CT 06269
} 860-486-2200
} 860-486-4331 (fax)
}
}
}
}
} ==============================Original Headers==============================
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}

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: tina-at-pbrc.hawaii.edu
Date: Tue, 12 Apr 2011 13:58:20 -0500
Subject: [Microscopy] RE: Detecting tissue on surgical burr with SEM/EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I've gotten several replies, which I will summarize later, and let you all
know what worked. Most of the replies, however, suggest osmium tetroxide,
which I have avoided because it is corrosive to stainless steel, and I
already had a very bad experience with dipping these burrs in bleach. I
may try the vapors. Anyone with either experience with this? Also, I can't
look for P with EDS because there is P in the adhesive. Other suggestions
included bromine from Eosin and Si from HMDS. I'm an EDS newbie, so I'm
naive.

Aloha,
Tina

} We have a client who is a cardiac surgeon using SEM to look at surgical
} burrs. These are diamond-encrusted rotary tips that are threaded up into
} the heart to drill out plaque. The current question is how much tissue is
} sticking to the burrs and preventing the diamonds from cutting. He
} originally wanted to see how much calcified plaque was present, and this
} was easy, using EDS to detect the Ca, color it in a map, and then do image
} analysis to see how much area was covered. I can't figure out how to look
} at non-calcified plaque. It's carbon, as are the diamonds. The adhesive is
} Ni and P, on a stainless steel base. Can anyone think of something I can
} "stain" the tissue with to be able to detect it with the EDS (this being
} easier and faster than identifying and hand selecting with ImageJ)?

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: nizets2-at-yahoo.com
Date: Wed, 13 Apr 2011 04:26:57 -0500
Subject: [Microscopy] Re: Phase contrast again- diffraction vs. refraction

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear David,

With our [5 year old] Zeiss 510 confocal Plan Apochromat and Neofluar
objectives, once you have removed that little screw on the outer barrel,
you can undo the top locking collar part of the objective by unscrewing
the little top ring collar completely - this is the top bit with the blue
paint striped ring around it on the outer barrel, just below the main
objective top lens on the inner lens barrel, and it should unscrew off in
a normal fashion and then the main inner lens barrel drops completely out
from the outer casing with the large spring and washers etc... i.e. the
spring mechanism is released. Once disassembled you can carefully clean
all the bits [spring, washers and inner/outer barrel sides - only the
inner lens barrel is really delicate and thats now separate].

This is clearly what you are trying to do [as you have removed the single
outer case holding screw on the objective, that screws into a small free
running slot on the inner barrel to control the up/down bit]. So it
appears this top screw-on collar [blue striped bit] on your objective is
stuck fast [assuming you have tried to remove it and failed - it turns in
a normal unscrew thread direction I think, but can't remember if it's
anti-clockwise or clockwise, I'm not at work for a few days so I'll have
to check that out later].

Ironically I have had the same problem with my Zeiss 40x Plan Neofluar
objective [whereas the screw collar on my 60x Plan Apochromat is quite
loose and easy to remove anytime]. I've tried gripping the top collar on
my 40x but it's stuck fast and won't unscrew, and I'll obviously scratch
the nice finish on the metal if I try any harder [which I am not prepared
to do, I leave that to the users - possibly Zeiss could provide another
collar cheaply as it's only a little bit of metal, albeit nicely painted].
I could try a bit of WD-40 to see if that gets the collars screw thread
released and off, and the spring mechanism apart, but again I'm loathe to
use oil/solvents of that nature near the optics.

Washing things down the sides in between the outer barrel and inner lens
barrel does work but I'd avoid it as you have to be extremely careful of
the lens at the base [nosepiece/turret end], as liquids seem to penetrate
inside the lens barrel quite easily down there, which is really bad news.
Oil in particular can creep upwards and doesn't evaporate conveniently
away, so I wouldn't try it [as it will keep on creeping after the
objective is replaced into the nosepiece, there's a lot of space between
the inner and outer casing for oil to get stuck in] - I'd concentrate on
getting that top locking collar off first.

Our Zeiss confocal engineer is visiting us soon, and I'll ask him for
advice on releasing a stuck screw-on collar - but obviously its anything
that would be good to get a seized thread working again.

Hope this helps and makes sense [I can send a photo on thursday of our
dissambled 63x objective if it doesn't].

Regards

Keith

-------------------------------------------------

Dr Keith J Morris,
Molecular Cytogenetics and Microscopy Core,
The Wellcome Trust Centre for Human Genetics,
Roosevelt Drive,
Oxford,
OX3 7BN,
United Kingdom.

Tel: +44 ( 0 ) 1865 287568
Email: kjmorris-at-well.ox.ac.uk
HomePage: http://www.well.ox.ac.uk/molecular-cytogenetics-and-microscopy


-----Original Message-----
X-from: Keith Morris [mailto:kjmorris-at-well.ox.ac.uk]
Sent: 12 April 2011 16:57
To: 'Keith J. Morris'

Here is the theory as I see it (correct if necessary):

The phase shift is not only due to the refraction index but also to the specimen
thickness. The phase shift is much more influenced by the refraction index and
specimen thickness than by the difference in traveled distance due to different
diffraction angles.
As to the roles of the condenser annulus and phase ring:
The condenser annulus produces a ring of light, such as the uninfluenced
(background) light will arrive exactly on the phase ring (this must be precisely
adjusted). The phase ring is represented by a special coating (or the glass is
carved) in such a way that the background light is by 1/4 phase-shifted (whether
positively or negatively).
Because the diffracted light is naturally shifted by about 1/4 too (this is due
to the refraction index and thickness of cells), the phase interference can be
destructive (dark) or additive (bright) up to 180°.
But even with the phase interference occuring that way, the background light
would be too intense to obtain really a good contrast of small details, so the
trick is to reduce the background light by up to 90° (again in the phase ring).
This is an artificial (but effective way) to increase the proportion of
interference light in the image creation process.
In other words, without a phase ring the phase interference would still occur
(although up to 90° and not 180°) but would be so small in comparison to the
intense background light that it would not give a good contrast.
Because the diffracted light does not follow a ring pattern like the background
light but rather diffract in all directions, it will not be influenced by the
phase ring and will join the background light (which passed through the phase
ring) in the image plane.

In other words the phase ring (along with the condenser annulus of course)
allows the physical sorting of background and diffracted light.

PS: it is possible that I didn't use the very accurate terms but I think (and
hope) that it makes the explanations easier to understand.

Stephane


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6, 36 -- Date: Wed, 13 Apr 2011 02:26:55 -0700 (PDT)
6, 36 -- From: Stephane Nizet {nizets2-at-yahoo.com}
6, 36 -- Subject: Re: [Microscopy] Phase contrast again- diffraction vs. refraction
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From: david.knecht-at-uconn.edu
Date: Wed, 13 Apr 2011 09:37:58 -0500
Subject: [Microscopy] Phase contrast again- diffraction vs. refraction

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

You explanation sounds much like many other explanations I have read, and has the same problem that led to my posting the initial question. You start out talking about refractive index and then switch to talking about diffracted light. Diffraction and refraction are quite different phenomenon and I can't see how they can be discussed as if they were interchangeable. The non-background light is shifted in path and phase either by refraction alone, diffraction alone or refraction of diffracted light or diffraction of refracted light and I am unclear which is most accurate description. Thanks- Dave

On Apr 13, 2011, at 5:27 AM, nizets2-at-yahoo.com wrote:

}
}
}
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}
} Here is the theory as I see it (correct if necessary):
}
} The phase shift is not only due to the refraction index but also to the specimen
} thickness. The phase shift is much more influenced by the refraction index and
} specimen thickness than by the difference in traveled distance due to different
} diffraction angles.
} As to the roles of the condenser annulus and phase ring:
} The condenser annulus produces a ring of light, such as the uninfluenced
} (background) light will arrive exactly on the phase ring (this must be precisely
} adjusted). The phase ring is represented by a special coating (or the glass is
} carved) in such a way that the background light is by 1/4 phase-shifted (whether
} positively or negatively).
} Because the diffracted light is naturally shifted by about 1/4 too (this is due
} to the refraction index and thickness of cells), the phase interference can be
} destructive (dark) or additive (bright) up to 180°.
} But even with the phase interference occuring that way, the background light
} would be too intense to obtain really a good contrast of small details, so the
} trick is to reduce the background light by up to 90° (again in the phase ring).
} This is an artificial (but effective way) to increase the proportion of
} interference light in the image creation process.
} In other words, without a phase ring the phase interference would still occur
} (although up to 90° and not 180°) but would be so small in comparison to the
} intense background light that it would not give a good contrast.
} Because the diffracted light does not follow a ring pattern like the background
} light but rather diffract in all directions, it will not be influenced by the
} phase ring and will join the background light (which passed through the phase
} ring) in the image plane.
}
} In other words the phase ring (along with the condenser annulus of course)
} allows the physical sorting of background and diffracted light.
}
} PS: it is possible that I didn't use the very accurate terms but I think (and
} hope) that it makes the explanations easier to understand.
}
} Stephane
}
}
} ==============================Original Headers==============================
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} 6, 36 -- From: Stephane Nizet {nizets2-at-yahoo.com}
} 6, 36 -- Subject: Re: [Microscopy] Phase contrast again- diffraction vs. refraction
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Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: oshel1pe-at-cmich.edu
Date: Wed, 13 Apr 2011 15:06:33 -0500
Subject: [Microscopy] Fwd: Ask-A-Microscopist - what does a microscopist do?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

All,

I've been thinking on this, and the only answer is "what kind of
electron microscopist?" I may be somewhat diverse (or dispersed), but
not nearly so much as microscopy is. So, I'm throwing this to the
list and inviting any who wish to answer to respond. Please do so to
the original poster at his email address. (Not to me or the list.)

Phil

} Date: Fri, 8 Apr 2011 20:14:53 -0700
} From: Niko Bellanti {niko4758-at-yahoo.com}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Friday, April 08,
} 2011 at 08:14:39 PM.
}
} realname - Niko Bellanti
} Email - niko4758-at-yahoo.com
} EDUCATION - Undergraduate College
} SUBJECT_OF_QUESTION - Job Details
} QUESTION - What does an average day on the job entail for an
} electron microscopist? If possible, several scenarios would be
} helpful in helping me understand what I would be doing from day to
} day.
} Thank you very much.
}
--
Philip Oshel
Microscopy Society of America
Ask a Microscopist
http://www.microscopy.org/microscopy/ask.cfm


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From: nizets2-at-yahoo.com
Date: Thu, 14 Apr 2011 02:38:43 -0500
Subject: [Microscopy] Phase contrast again- diffraction vs. refraction

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Abbe defined the formation of a microscope image as the result of interferences
between diffracted wave fronts. 
But you also have refraction due to the difference in density (refractive
index).
Actually you get both phenomena if you observe cells.
Both phenomena must be taken into account for phase contrast because they are
responsible for different parts of the technique:
The phase-shift, responsible for the contrast, is due to the refraction (as I
said it is not enough to create a good contrast image though, you still need to
phase-shift and dim the background light).

The separation of background light from diffracted light is made possible by the
diffraction phenomenon taking place in the specimen and by the presence of the
phase ring at the objective (which specifically modifies the background light
without affecting the diffracted light).
In summary, both terms and definitely not interchangeable but they are
still both playing a role in the formation of a phase-contrast image.
 
Regards,
 
Stephane
 


----- Original Message ----
X-from: "david.knecht-at-uconn.edu" {david.knecht-at-uconn.edu}
To: nizets2-at-yahoo.com
Sent: Wed, April 13, 2011 4:46:12 PM

You explanation sounds much like many other explanations I have read, and has
the same problem that led to my posting the initial question.  You start out
talking about refractive index and then switch to talking about diffracted
light.  Diffraction and refraction are quite different phenomenon and I can't
see how they can be discussed as if they were interchangeable.  The
non-background light is shifted in path and phase either by refraction alone,
diffraction alone or refraction of diffracted light or diffraction of refracted
light and I am unclear which is most accurate description.  Thanks- Dave

On Apr 13, 2011, at 5:27 AM, nizets2-at-yahoo.com wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
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}
} Here is the theory as I see it (correct if necessary):
}
} The phase shift is not only due to the refraction index but also to the
} specimen
}
} thickness. The phase shift is much more influenced by the refraction index and


} specimen thickness than by the difference in traveled distance due to different
}
}
} diffraction angles.
} As to the roles of the condenser annulus and phase ring:
} The condenser annulus produces a ring of light, such as the uninfluenced
} (background) light will arrive exactly on the phase ring (this must be
} precisely
}
} adjusted). The phase ring is represented by a special coating (or the glass is


} carved) in such a way that the background light is by 1/4 phase-shifted
} (whether
}
} positively or negatively).
} Because the diffracted light is naturally shifted by about 1/4 too (this is due
}
}
} to the refraction index and thickness of cells), the phase interference can be


} destructive (dark) or additive (bright) up to 180°.
} But even with the phase interference occuring that way, the background light
} would be too intense to obtain really a good contrast of small details, so the


} trick is to reduce the background light by up to 90° (again in the phase ring).
}
}
} This is an artificial (but effective way) to increase the proportion of
} interference light in the image creation process.
} In other words, without a phase ring the phase interference would still occur
} (although up to 90° and not 180°) but would be so small in comparison to the
} intense background light that it would not give a good contrast.
} Because the diffracted light does not follow a ring pattern like the background
}
}
} light but rather diffract in all directions, it will not be influenced by the
} phase ring and will join the background light (which passed through the phase
} ring) in the image plane.
}
} In other words the phase ring (along with the condenser annulus of course)
} allows the physical sorting of background and diffracted light.
}
} PS: it is possible that I didn't use the very accurate terms but I think (and
} hope) that it makes the explanations easier to understand.
}
} Stephane
}
}
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} refraction
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Dr. David Knecht   
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)




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From: RossLM-at-missouri.edu
Date: Thu, 14 Apr 2011 11:05:35 -0500
Subject: [Microscopy] 9th Annual Image Processing and Analysis Workshop, June 7-10

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Marissa,

This has been sitting in my draft folder for a while, so I should pass it
on...

This sounds a bit like Picein wax*, often called black wax [for obvious
reasons] which is soluble in benzene/turpentine, not sure about acetone
though [alcohol didn't affect it] - there were varieties with different
melting properties. I'm not sure if its about much as most references are
20+ years ago, and I had some supplied by Edwards Vacuum Ltd - its use is
more commonly quoted the in 1930s to 1970s. Trouble is black wax is a bit of
a vague generic term, and your microscopist might well have been thinking of
a newer wax or brand name.

The only recent link I can find for Picein wax is from 1992. I expect Picein
wax has been replaced with more modern varieties or been simply been
rebranded, e.g. Edwards Apiezon wax? That sounds a bit like the name of
Pat's black wax - which apparently is "an excellent material for shielding
or blanking off sections of apparatus, and the compound is easily applied
and can be readily removed" [just like Picein wax], see:

http://www.edwardsvacuum.com/Products/List.aspx?r=154

There is also a black wax [Mounting Wax 100, MWM100 Black Wax] listed at
http://www.emsdiasum.com/microscopy/products/materials/adhesives.aspx
Which might well be the wax you are interested in [and could be Picein wax
in a new guise], so again Pats advice is sound.

Keith

*Picein wax is [or was] used as a vacuum sealer and insulator. I tried it as
a sealant for around coverslips as it was lying about in the lab [came from
Edwards the vacuum pump people, I seem to remember], and it works in a
similar, if less permanent, fashion to the engine paint Glyptal enamel for
sealing in large specimens onto glass slides [whole organisms] with the
cover-slip say resting on a raised plastic ring and the Glyptal paint/picein
wax sealing/bonding the glass and plastic ring together [Glytal paint seems
far more permanent than nail varnish, assuming its constituents haven't
changed] - I believe Glyptal enamel paint was also used to help seal vacuum
joints but I imagine it's a lot more difficult to remove than Picein wax.
Picein Black Wax was good for gluing/sealing around mica windows apparently.
These days I generally use black extra strength nail varnish as it's easier
to handle, I now rarely emtomb whole specimens, and archive life and space
is too short for permanent slide preparations.

---------------------------------------------------------------------------
Dr Keith J. Morris,
Molecular Cytogenetics and Microscopy Core,
Laboratory 00/069 and 00/070,
The Wellcome Trust Centre for Human Genetics,
Roosevelt Drive,
Oxford  OX3 7BN,
United Kingdom.

Telephone:  +44 (0)1865 287568
Email:  kjmorris-at-well.ox.ac.uk
Web-pages: http://www.well.ox.ac.uk/molecular-cytogenetics-and-microscopy



-----Original Message-----
X-from: connellyps-at-nhlbi.nih.gov [mailto:connellyps-at-nhlbi.nih.gov]
Sent: 08 April 2011 15:43
To: kjmorris-at-well.ox.ac.uk

Marissa,

In 1976 I started in a lab that had some sticks of black wax in the cabinet.
I never used it but thought that it was possibly used to seal vacuum leaks.
I remember that they were very hard and not what I would consider wax like.
It had an orange label on it and I think it may have been Apizion or
something similar to that printed on it. I think it may have come from
Thomas or VWR as they supplied a lot of the things that I inherited there.

If they have not contacted you in response to your posting, I'd suggest you
phone or email one of the EM product suppliers like SPI, Electron Microscopy
Sciences, Ted Pella to name a few for they all have a vast knowledge of
products that are currently available.

You might wish to post what you want to accomplish by using the black wax so
we can make suggestions or go back to the person who suggested it to you and
ask for the supplier information that he may have.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not
represent the NIH. This message is not confidential and can be freely shared
and reproduced.

________________________________
X-from: {vray-at-partbeamsystech.com}
Reply-To: {vray-at-partbeamsystech.com}

The Electron Microscopy Core at the University of Missouri is hosting the 9th Annual Short Course and Workshop on Computer-Assisted Image Analysis and Measurement taught by Dr. John C. Russ on June 7-10, 2011. This popular course is intended to familiarize users of image analysis hardware and software with the fundamental principles and methods available to obtain meaningful results.

Image analysis and measurement techniques are utilized in a broad range of applications usually to extract numerical values (number, size, shape, etc.) or the location of objects. In other cases, global structural parameters such as the volume and surface of features are of interest.

The course relies heavily on tightly coupled lectures and hands-on exercises covering a wide variety of methodologies, approaches and tools, through a set of practical, step-by-step instructions to minimize the learning curve. Time will also be allotted for students to develop imaging strategies while working on their own micrographs.

No specific background is assumed, although users should already be familiar with microscopy or other imaging technologies. The software platform for the examples and exercises is Adobe Photoshop utilizing a comprehensive set of plug-ins from Reindeer Graphics. The course begins with An Introduction to Adobe Photoshop for Scientific Imaging.

Dr. Russ is the internationally acclaimed author of innumerable articles and several books on image analysis techniques and digital imaging, including the The Image Processing Handbook. He is widely known for his workshops and short courses and has helped to develop software packages to make image analysis methods more accessible to non-specialists. Many of the examples used in the course involve light or electron microscope images, but students are invited to bring their own images (TIFF files) for discussion and analysis. Ample time is provided at the end of the course for individual instruction.

The registration fee is only $1400. Enrollment is limited to assure individualized instruction. More information can be found at: www.emc.missouri.edu/ or by contacting the course coordinator Lou Ross.

Lou Ross
Sr. Research Specialist
University of Missouri
Electron Microscopy Core Facility
W136 Veterinary Medicine Building
Columbia, MO 65211
573.882.4777, fax 573.884.2227
RossLM-at-missouri.edu
http://www.emc.missouri.edu/




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From: William.F.Tivol-at-aero.org
Date: 04/12/2011 04:55 AM
Subject: [Microscopy] Cleaning Gatan CCD surface

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Dear Laci,
When that happened to a CCD on a scope I previously worked at, a
service person from GATAN carefully rinsed the surface of the scintillator
with alcohol. This was a fairly risky procedure, since even this gentle
process could damage the surface of the scintillator, but it was done
successfully.
Yours,
Bill



X-from: jflaci-at-ms.sapientia.ro
To: William.F.Tivol-at-aero.org




We recently discovered (yesterday), that our CCD surface is
contaminated with fluid and solid particles,
the problem is that is affecting image quality.

Any of You can recommend a cleaning procedure for this surface?

Laci


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From: marcia_pitzenberger-at-merck.com
Date: Thu, 14 Apr 2011 11:56:57 -0500
Subject: [Microscopy] TEM Pore formation in RBC Membranes

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All -
I'm trying to use negative stain TEM to confirm pore formation in RBC
membranes treated with pore forming toxins following published methods.
I'm wondering what methods people have had the most success with. If
you have some experience with this and are available to discuss, please
contact me.

Marcia Pitzenberger
Merck & Co., Inc.
WP45-104
P.O.Box 4
West Point, PA 19486-0004
Tel 215 652-9767
Fax 215 652-7758
marcia_pitzenberger-at-merck.com
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From: shafermr-at-whitman.edu
Date: Thu, 14 Apr 2011 18:11:03 -0500
Subject: [Microscopy] microscope/camera systems for teaching labs

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We are in the need of new camera's to fit our current microscopes for our teaching labs. We currently have Nikon Coolix 4500 cameras that attach to compound scopes (Olympus CH-30) via trinocular heads. The cameras are nice because they connect to TVs (= a bigger screen for lab partners and professors to see) and the pictures are saved to a memory card (= we don't have to have computers on every bench). The Nikon Coolpix cameras are getting old and starting to fail, and they've been discontinued and are hard to find. We would like to get new camera's for these scopes but I'm having a hard time finding ones that connect to TVs and whose pictures are saved to a memory card. Any suggestions??

Thank you!!

Michelle Shafer
Whitman College
Biology & BBMB
shafermr-at-whitman.edu


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 14 Apr 2011 18:26:30 -0500
Subject: [Microscopy] viaWWW:TMV

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Email: Angel.Paredes-at-fda.hhs.gov Name: Angel Paredes

Organization: NCTR/FDA

Title-Subject: [Filtered] TMV

Message: Hi,

I would like to use TMV as a standard for microscope evaluation (look at
layer lines in cryoEM images). I may have some at my home institution
but obviously I wouldn't want to break any state or federal laws
bringing it to my new institution. Does anyone know what rules govern
the transport of this plant pathogen in the U.S.? Is there any
alternative to TMV in terms of a known standard we can use to evalute an
electron microscope with?

Thank you,
Angel Paredes
Director of EM services
NCTR
Jefferson, Arkansas 72079



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From: RossLM-at-missouri.edu
Date: Fri, 15 Apr 2011 14:00:15 -0500
Subject: [Microscopy] CSMMS Spring Meeting 4/22/11

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Hi
I can't help with the legal thing, I've been having trouble finding a
supplier of TMV in the Uk so I intend to resort to growing some tobacco
and infecting it from a pack of rolling tobacco ( apparently quite easy
) but I have a suggestion for an alternative -

Bovine catalase crystals will give you a nice 8.75 x 6.85nm lattice to
work with
Cheers
Ian

http://www2.warwick.ac.uk/fac/sci/lifesci/facilities/imaging




-----Original Message-----
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[mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: 15 April 2011 00:31
To: Portman, Ian

Central States Microscopy and Microanalysis Society Spring 2011 Meeting
Friday April 22, 2011

Location: Havener Center, Missouri University of Science and Technology, Rolla, Missouri
Campus map: http://www.mst.edu/documents/CampusMap.pdf
Travel and parking directions included, see below
No registration fee, please RSVP to Clarissa Wisner cvierret-at-mst.edu

Technical Sessions, Vendor Displays, Student Posters

Program
9:00 am Registration, Visit with Exhibitors, View Posters

9:45 am Introduction, Paul Carpenter, President, CSMMS

10:00 am Brian Strohmeier, Thermofisher Surface Characterization of Gunshot Residue (GSR) by X-ray Photoelectron Spectroscopy (XPS) and High Resolution Electron Microscopy

10:45 am Ryan Zeigler, Washington University Overview of Lunar Sample Analysis

11:15 am Paul Carpenter, Washington University Advances in EPMA: Problem Solving Methods

11:45 am Katherine Gibson, Washington University High Current Electron-probe Microanalysis of Ni and Co in Olivine in the NWA 773 Lunar Meteorite Clan

12:00 noon Lunch (on your own/small groups)

1:00 pm Visit Exhibitors, View Posters

1:30 pm Steve Seddio, Washington University Backscattered Electron Tomography of Zirconolite in Lunar Sample 12032,366-19.

1:45 pm Tiffany Lucas, University of Missouri Investigating virus assembly with scanning electron microscopy

2:00 pm Laurie Krupa, EDAX Ametek Advances in SDD Technology for TEM

2:30 pm Scott Sitzman, Oxford Instruments Enhancing user productivity and efficiency in EBSD

3:00 pm Pete Hayden, University of Missouri Transmission electron microscopy story of epidemic childhood adolescent obesity: Marked remodeling of tissues

4:30 pm CSMMS Business Meeting

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From: dsherman-at-purdue.edu
Date: Mon, 18 Apr 2011 10:15:20 -0500
Subject: [Microscopy] Salvage JEOL 800 or 6000 series SEMs

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Folks,

I would appreciate your contacting me if you plan to discard any JEOL 800 or
6000 series SEMs. We are trying to keep a couple of these older scopes
running for training instruments and really need to have a supply of parts.

If instruments are within a day's drive than we will come and dismantle and
transfer. If much further away than we will have to make arrangements for
transport.

Thanks,
Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/



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From: Ann-Fook.Yang-at-AGR.GC.CA
Date: Mon, 18 Apr 2011 13:26:09 -0500
Subject: [Microscopy] Osmium, freeze substitution, and immonogenicity

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I am posting the following for a colleague who has difficulty with his computer. Please reply to microscopy so that everyone can read it, including him.

Ann Fook

Ann-Fook Yang,
EM Unit | Unite EM
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Hello all,



New subscriber, first-time poster.



We are using high-pressure freezing along with freeze substitution to try preserving the structure of Arabidopsis pollen. One of the challenges is preserving the pollen kitt (tryphine) on the surface of the pollen which mostly comprises of lipids and sterol-esters. We have attempted to use just paraformaldehyde (2%) and glutaraldehyde (0.2%) in the freeze substitution fixative in the hopes that the proteinaceous components of the pollen kitt would be sufficiently fixed to retain its structure after embedding but this has clearly shown to not be the case.



Our final option would be to try varying concentrations of osmium (which is known to fix lipid components) but we are very concerned about loss of immunogenicity (which we will require from the protocol).



Does anyone have any experience with the use of osmium in low temperature freeze substitution protocols where immunogenicity is adequately preserved? We would like some feedback from the community concerning the range of concentrations that we could try as well as the compatibility of osmium with other fixatives (paraformaldehyde, glutaraldehyde). The last point is expecially important because one of our samples is whole anther and the last thing we need is black osmium metal ppt in an enclosed space.



Thank you kindly for any suggestions,


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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Mon, 18 Apr 2011 14:23:21 -0500
Subject: [Microscopy] Osmium, freeze substitution, and immonogenicity

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} We are using high-pressure freezing along with freeze substitution to try
} preserving the structure of Arabidopsis pollen. One of the challenges is
} preserving the pollen kitt (tryphine) on the surface of the pollen which
} mostly comprises of lipids and sterol-esters. We have attempted to use just

} paraformaldehyde (2%) and glutaraldehyde (0.2%) in the freeze substitution
} fixative in the hopes that the proteinaceous components of the pollen kitt
} would be sufficiently fixed to retain its structure after embedding but this

} has clearly shown to not be the case.

first, I do not have any experience with plant material, I have to admit.
I can imagine that bio-material with lots of lipids and sterol esters is
difficult to preserve.
Whether the material is "sufficiently fixed to retain its structure after
embedding", not only depends on the aldehydes but may also depend on the
solvent, and the resin. You do not write which solvent is used, acetone, or
ethanol, methanol, or something else?
One of the tricky tasks is to find the best solvent for substitution, along
with a good time schedule. Not easy.
In addition, you don't know which embedding medium is to be used - which is
usually infiltrated at -30, 0 C, or even room temp, but under these conditions,
the liquid, monomer embedding medium is an organic solvent, which may / will
extract some of the (hydrophobic) bio-material, although we don't like this to
happen ...

} Our final option would be to try varying concentrations of osmium (which is

} known to fix lipid components) but we are very concerned about loss of
} immunogenicity (which we will require from the protocol).

I do not trust OsO4 too much - I have seen too many cases where "solvent" +
0.5 (0.25) % Uac, plus aldehyde plus 2-5% Water (Yes!!) has been superior to
adding OsO4 in any concentration.
What I would try first: solvent + 0.5% Uranyl Acetate, aldehyde, (water).

} Does anyone have any experience with the use of osmium in low temperature
} freeze substitution protocols where immunogenicity is adequately preserved?


I recall that those who have tried, reported some 0.0x or up to 0.x % OsO4 (x
= 1 - 2), in acetone ...
See above: try to omit OsO4 completely. Only use UAc. Worth a try.
Alternatively: try to freeze-substitute with resin monomer, already present at
very low temp. in the solvent. Epoxy was seen to act as fixative during
freeze-substitution. see Matsko and Müller 2005 JSB

kind regards,
Reinhard

--
Prof. Dr. Reinhard Rachel
Universitaet Regensburg
Centre for EM / Anatomy
Faculty for Biology&Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 18 Apr 2011 18:53:39 -0500
Subject: [Microscopy] viaWWW:TEM soft coral

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Email: wadowska-at-upei.ca Name: Dorota Wadowska

Organization: Atlantic Veterinary College at UPEI

Title-Subject: [Filtered] TEM soft coral

Message: Hi,
I received samples of soft coral that I am processing for routine TEM. I
am not pleased with the results. I used 2% glut in 0.1M Na cacodylate
made in ASW, decalcified in 0.1M di Na EDTA + 2% glut in 0.1M Na cac
made in ASW and postfix in osmium. I extended dehydration steps to 30
min twice in each concentration. The ultrastructure is not satisfactory,
cells are vacuolated. I am looking for a protocol to improve preparation
of these samples. Your input from is welcome.
Thank you Dorota

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 18 Apr 2011 18:54:38 -0500
Subject: [Microscopy] viaWWW:merican Society for Microbiology in New Orleans. Looking to

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Email: rcguerrero-at-gmail.com Name: Ricardo Guerrero

Organization: Emory University School of Medicine

Title-Subject: [Filtered] ASM in New Orleans. Looking to share
accomodation costs

Message: Greetings!
I will be attending the general meeting of the American Society for
Microbiology in New Orleans, LA (May 21-24).
It's been really difficult to find accommodation at this time so I am
looking for an attendee who would be willing to share the costs of
housing with me.
If interested and to discuss specifics please contact me at
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Thanks!

Ricardo

-----------------------------------------
Ricardo C. Guerrero, PhD
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 19 Apr 2011 07:41:31 -0500
Subject: [Microscopy] viaWWW:Chamber vaccum problem

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Email: Artur.irani-at-yahoo.com Name: Kazem

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Title-Subject: [Filtered] Chamber vaccum problem

Message: Hi dear friends
We have EPMA SX100, in which there is problem in its chamber. after
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anybody have idea please help me to solve this problem.
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 19 Apr 2011 07:42:32 -0500
Subject: [Microscopy] viaWWW:Job Opening China Application Specialist

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Email: nian.qing.li-at-ametek.com.cn Name: Nianqing Li

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Title-Subject: [Filtered] China Application Specialist

Message: EDAX, a global leading supplier of material microanalysis
solutions, is looking for an experienced Application Specialist to
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University Degree (preferably Ph.D.) in materials science with a
thorough understanding of electron microscopy (SEM and TEM), chemistry,
crystallography, the analytical techniques EDS, WDS, EBSD and Micro XRF.
Should have a minimum of 3 years experience in the use of product line
equipment with good teaching skills as well as strong communication
skills, both verbally and in writing in Mandarin and English. For more
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From: delannoy-at-jhmi.edu
Date: Tue, 19 Apr 2011 09:30:52 -0500
Subject: [Microscopy] reduced osmium IEM

Contents Retrieved from Microscopy Listserver Archives
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Hello fellow microscopists,
Has anyone ever tried potassium ferrocyanide reduced osmium in a freeze substituion cocktail (after HPF) for post embded IEM labeling of LR white or gold section? If so could you post a protocol.


sincerely,
Michael Delannoy

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From: maloneyb-at-fiu.edu
Date: Tue, 19 Apr 2011 09:44:52 -0500
Subject: [Microscopy] Need Calendar system for use of our research center and its instruments

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Dear Group - we need a calendering system that needs to be linked with
our webcite here at the university. In the past, our users would submit
their event and we would approve it. At one point we were able to color
code the type of user. This would also be helpful for billing
purposes. We could view daily, weekly, monthly and annually. Our
university has changed the calendaring system so drastically that we
cannot use it any longer for the purpose of scheduling.
Appreciate any suggestions you may have.
Thanks
Barbara

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From: protrain-at-emcourses.com
Date: Tue, 19 Apr 2011 11:55:32 -0500
Subject: [Microscopy] viaWWW:Chamber vaccum problem

Contents Retrieved from Microscopy Listserver Archives
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Hi

First action is to wipe your finger all of the way round the "O" ring
surface; do not clean with a solvent. Then clean the flat plate surface in
the area where the "O" ring would sit; here you may use a solvent.

Do not grease the "O" ring

Good Luck

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



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Email: Artur.irani-at-yahoo.com Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] Chamber vaccum problem

Message: Hi dear friends
We have EPMA SX100, in which there is problem in its chamber. after
opening the chamber because of sample trapping (i opened the bottom of
chamber and toke out the samples), the vacuum isn't completed, is
anybody have idea please help me to solve this problem.
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From: Frank_Karl-at-lincolnelectric.com
Date: Wed, 20 Apr 2011 11:31:20 -0500
Subject: [Microscopy] zworykin-demonstrates-electron-microscope

Contents Retrieved from Microscopy Listserver Archives
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The listserver seems to be in sleep mode, perhaps it's the holiday and
spring break, but for microscope history buffs here's a link.

http://www.wired.com/thisdayintech/2011/04/0420zworykin-demonstrates-electron-microscope/

Wire is one of my favorite websites, i hope you enjoy the article.

Frank

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From: bozhilov-at-ucr.edu
Date: Wed, 20 Apr 2011 14:48:15 -0500
Subject: [Microscopy] Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
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A recent paper in JACS (do not want to provide citation intentionally) clams to have used EDS analysis in the TEM to determine presence of about 1% of Na in ZnO single crystals. Any comments on validity and prudence of such a claim?

Krassimir Bozhilov
Central Facility for Advanced Microscopy and Microanalysis
University of California,
Riverside, CA 92521

phone 951 827 2998
fax 951 827 2489





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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 20 Apr 2011 18:00:29 -0500
Subject: [Microscopy] viaWWW:ASYNC EMI problems for new SEM

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Email: rfoley-at-uab.edu Name: Robin Foley

Organization: UAB

Title-Subject: [Filtered] ASYNC EMI problems for new SEM

Message: All, we're getting a new FEI650FEG SEM and just had the site
survey. We've been running an ancient SEM in the room for many years.
They've informed us that our room failed the ASYNC EMI requirements. We
can go ahead and get it installed with a waiver without fixing the ASYNC
EMI issues and then try and fix them later if they are a problem. Or we
can try and get it fixed now.

Do any of you have experience with this sort of problem? Is it really a
big problem or a little one? If it is a big problem that needs fixing,
do you have recommendations on how to fix it? (Methods and before or
after installation?)

Thanks,
Robin Foley

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 21 Apr 2011 07:18:50 -0500
Subject: [Microscopy] viaWWW: Re: ASYNC EMI problems for new SEM

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Email: innap-at-savion.huji.ac.il Name: Inna Popov

Organization: the Hebrew University of Jerusalem

Title-Subject: [Filtered] ASYNC EMI problems for new SEM

Message: Robin, About a year ago we had faced the same problem before
installation of FEI Magellan in a newly prepared room. The room has
ASYNC EMI a bit higher than the pre-installation requirement states. We
made several efforts with more than one EM expert, failed to identify
the source of this EMI, but we mapped all the EMI sources neiboring the
room and found that we can decrease their effect by installing
EM-dissipating metal plates over sorrouding walls. Then we installed the
instrument and found no problem of interference at any scan condition,
and the specs were OK as well. Before the installation we asked FEI
about possible effects of this over-spec ASYNC EMI. According to FEI,
there could be flagging at specific scan condition set. Our ASYNC EMI
was about 10% higher than specs in only one direction.
We decided to proceed with installation first, becuase the EMI was not
too large and because FEI Magellan has extremely wide set of scan
conditions at which we hoped to escaped flagging even if it will occur.
Hope it will help you to make you decision. Good luck, Inna

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From: PhillipsT-at-missouri.edu
Date: Thu, 21 Apr 2011 11:54:42 -0500
Subject: [Microscopy] Bone prep - gross

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An unusual question but experience has shown that there is a lot of unusual expertise in this crowd. I collected (under federal license), some ocular tissue from raptors that had to be euthanized. I was mostly interested in the conjunctiva but they have scleral ossicles (bones in the whites of their eyes) so I couldn't resist collecting those. After hours or more in 2% paraformaldehyde, I dissected away the globe and most extraneous tissue from the ossicles. I want to ultimately get a stereoscope image of the ossicles so I put the specimens in medium concentration NaOH for weeks. Periodically I gently scrubbed tissue off of them. They are a lot cleaner but still have a gelatinous layer (collagen?) attached to them that is difficult to remove. Any thoughts on cleaning these bones up? Naturally collagenase is a possibility although after fixation and NaOH treatment I don't know how effective the enzyme would be. I would prefer something easy like dumping them into a bucket of some solvent. Thoughts?

Thanks, Tom

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/



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From: hyi-at-emory.edu
Date: Thu, 21 Apr 2011 12:12:45 -0500
Subject: [Microscopy] High vacuum coaters

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Dear Microscopists:

I posted a message a few weeks ago asking for opinions on RMC ultramicrotome. I want to thank those who replied. The information was extremely helpful.

I now need your opinion on another product. We are looking for a high vacuum coater. Two models we are looking into are Leica EM SCD500 High vacuum sputter coater (previously sold under Bal-tec with same name) and Gatan 681 High Resolution Ion Beam coater. If you own or have experience using one of these (or both) models, would you share your comments with me. Please email me at hyi-at-emory.edu. Thank you in advance.

Sincerely,

Hong

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From: DusevichV-at-umkc.edu
Date: Thu, 21 Apr 2011 12:51:16 -0500
Subject: [Microscopy] RE: Bone prep - gross

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Tom,
You can try Sodium hypochlorite. It removes pretty thick layer of collagen from etched bone/dentine in 5-20 min, but I have not tried it on fixed collagen. And you do not need to order chemicals: household bleach works fine.
Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} -----Original Message-----
} From: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
} Sent: Thursday, April 21, 2011 11:56 AM
} To: Dusevich, Vladimir
} Subject: [Microscopy] Bone prep - gross
}
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} An unusual question but experience has shown that there is a lot of
} unusual expertise in this crowd. I collected (under federal license),
} some ocular tissue from raptors that had to be euthanized. I was
} mostly interested in the conjunctiva but they have scleral ossicles
} (bones in the whites of their eyes) so I couldn't resist collecting
} those. After hours or more in 2% paraformaldehyde, I dissected away
} the globe and most extraneous tissue from the ossicles. I want to
} ultimately get a stereoscope image of the ossicles so I put the
} specimens in medium concentration NaOH for weeks. Periodically I gently
} scrubbed tissue off of them. They are a lot cleaner but still have a
} gelatinous layer (collagen?) attached to them that is difficult to
} remove. Any thoughts on cleaning these bones up? Naturally collagenase
} is a possibility although after fixation and NaOH treatment I don't
} know how effective the enzyme would be. I would prefer something easy
} like dumping them into a bucket !
} of some solvent. Thoughts?
}
} Thanks, Tom
}
} Thomas E. Phillips, Ph.D
} Professor of Biological Sciences
} Director, Molecular Cytology Core
} 2 Tucker Hall
} University of Missouri
} Columbia, MO 65211-7400
} 573-882-4712 (office)
} 573-882-0123 (fax)
} phillipst-at-missouri.edu
}
} http://www.biology.missouri.edu/faculty/phillips.html
} http://www.biotech.missouri.edu/mcc/
}
}
}
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From: William.F.Tivol-at-aero.org
Date: 04/20/2011 01:02 PM
Subject: [Microscopy] Na in ZnO

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Dear Krassimir,
1% is possible, but close to the limit of detectability. I
presume that the EDS system has an ultrathin window or no window. As to
the prudence, if the spectra show a bump at the right position, and there
is no possibility of interference from another element, (I don't have
access to a table of x-ray lines, but I know that Cu-L is somewhere near
Na-K.) I see nothing wrong with reporting it as Na. At one time I was
looking for chlorinated hydrocarbons in clay samples, and I could see a
small bump where the Cl should be in some of the grains. I also saw the
Ti-L alpha clearly and the Ti-L beta was the same size as the Cl and
obviously must be there. This gave me confidence that the Cl bump was
also real.
Yours,
Bill



X-from: bozhilov-at-ucr.edu
To: William.F.Tivol-at-aero.org



A recent paper in JACS (do not want to provide citation intentionally)
clams to have used EDS analysis in the TEM to determine presence of about
1% of Na in ZnO single crystals. Any comments on validity and prudence of
such a claim?

Krassimir Bozhilov


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From: wesaia-at-iastate.edu
Date: 04/20/2011 01:02 PM
Subject: [Microscopy] Na in ZnO

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I have been posting replies privately. I suppose I should summarize to the list.

There should be no problem detecting Na with even a Be window detector, but I would assume this is a thin-window detector.

The big problem is an overlap with the Zn-L line, and they are measuring Na in ZnO. That will be difficult. It might be possible if they are using their own profiles for the elemental peaks under their exact conditions and calibration. If they are using the factory profiles, it is probably not feasible. We collect our spectra a little faster than the factory used for their profiles, so the peaks are a bit wider. That may be fine in the case of widely separated elements. It breaks down in cases of peak overlaps.

A follow-on post indicated that this researcher had tried mapping for Na and found it uniformly distributed. It was not at all clear if the researcher considered the Zn-L overlap with Na-K. I know our system does not deconvolve peak overlaps for mapping. I don't think it even does background corrections. Maybe new systems do with their spectral imaging. I make sure to label the Na map as Na/Zn if there is any chance of the overlap.

Warren Straszheim
Materials Analysis and Research Lab
Iowa State University

-----Original Message-----
X-from: William.F.Tivol-at-aero.org [mailto:William.F.Tivol-at-aero.org]
Sent: Thursday, April 21, 2011 1:48 PM
To: wesaia-at-iastate.edu

Dear Krassimir,
1% is possible, but close to the limit of detectability. I
presume that the EDS system has an ultrathin window or no window. As to
the prudence, if the spectra show a bump at the right position, and there
is no possibility of interference from another element, (I don't have
access to a table of x-ray lines, but I know that Cu-L is somewhere near
Na-K.) I see nothing wrong with reporting it as Na. At one time I was
looking for chlorinated hydrocarbons in clay samples, and I could see a
small bump where the Cl should be in some of the grains. I also saw the
Ti-L alpha clearly and the Ti-L beta was the same size as the Cl and
obviously must be there. This gave me confidence that the Cl bump was
also real.
Yours,
Bill



X-from: bozhilov-at-ucr.edu
To: William.F.Tivol-at-aero.org



A recent paper in JACS (do not want to provide citation intentionally)
clams to have used EDS analysis in the TEM to determine presence of about
1% of Na in ZnO single crystals. Any comments on validity and prudence of
such a claim?

Krassimir Bozhilov


==============================Original Headers==============================
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From: kjmorris-at-well.ox.ac.uk
Date: Thu, 21 Apr 2011 14:26:04 -0500
Subject: [Microscopy] Re: Stuck Zeiss objective

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Dear David,

I have now had a chat with our Zeiss engineer regarding your 63x times
Plan Apochromat objective and our 40x Plan neofluar objective that have
similar problems with the lens barrel/spring assembly. Apparently the
loose top on our 63x times is a fault, and has probably been loosened by
immersion oil and it shouldn't easily unscrew apart like it does, that’s
no doubt why the tops on our other objectives seem stuck fast, i.e. they
have been factory fitted and lock-tight sealed. Obviously immersion oil
penetration or possibly solvents have released the factory locked thread
on our 63x oil plan apochromat. The locking ring can be removed, but
apparently this is best done at the factory as it can affect the alignment
of the internal barrel optics. So disregard my previous suggestion that
you may be able to take apart the objective, that’s best left to the Zeiss
service department. Looking at our 63x plan apochromat that comes apart,
I'm not quite sure what can be miss aligned when you screw it back
together (might be because the inner lens barrel with it's simple
retaining clip is exposed), but Id stick to the Zeiss advice in any case
(besides I doubt most could easily remove the screw top anyway as they are
so well screwed on).

So the only option for your stuck retractable top is to risk putting
solvents or oil down the inside of the barrel yourself, as you suggest, or
send it back to Zeiss and let them take the objective apart as described
and clean/realign it for you.

If the spring mechanism is stuck fast, that doesnt sound like immersion
oil contamination, sounds more like a hard set mountant has crept in which
might be more of a problem, as only its original solvent will easily shift
it (i.e. toluene if its Histomount, but you probably wouldn't know which
hard-set mountant). With immersion oil contamination (using inverted live
cell optics) you just take the objective out and leave it on a tissue for
24h or so to let all the oil drip/flow out (you can get 0.5ml of immersion
oil into that barrel, and occasionally our users have done just that, and
with our inverted microscope it can easily drip onto the microscope's
internal optics/mechanics).

Pouring organic solvents or oil down the inner tube to dissolve/dislodge
whatever has stuck to your internal spring is a bit more fraught as
solvents definitely do seem to creep inside the internal optics at the
base if you overdo it. However hopefully with the objective upright on
tissues, small amounts of whatever [oil or solvents] sent down the barrel
will simply drip out onto the tissue and bypass the back lens assembly
completely (as its designed to do with immersion oil excesses). I have
done it occasionally, but I find all very worrying though, and sending
your 'gummed up' £5,000 objective back to Zeiss for dismantling and
cleaning might be an easier option, as the objective might be stuck down
slightly from its correct position and whatever has stuck it down might be
tricky to remove compared to immersion oil. I guess if you can free the
spring though, the fact that there's still some hardened mountant still
glued to the spring probably won't affect its optical quality provided the
top can rise up fully.

I would try using small disposable hair bands around the tops of the
objective if your objectives are in inverted configuration [as recommended
to me by a Zeiss engineer]. They really do seem to reduce the flow of
immersion oil down into the inner tube area and it would have prevented
any hard set mountant or whatever getting inside and onto the spring
assembly in the first place. The hair band doesn't affect the retraction
of the lens, as the inner barrel just slides past it. I have a photo of a
hair band in use here on our 63x

http://www.well.ox.ac.uk/cytogenetics/objective_hair_band.jpg

I did think the hair band would look a bit naff, but it looks OK as its
all hidden below the stage anyway, and more importantly it does seem to
offer some useful oil/mountant protection for those using inverted
microscopes, as otherwise fluids flow too easily into the crevice created
by the retractable inner barrel, particularly with the stage 37oC
incubator on.

Happy Easter

Regards

Keith

---------------------------------------------------------------------------
Dr Keith J. Morris,
Molecular Cytogenetics and Microscopy Core, Laboratory 00/069 and 00/070,
The Wellcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford OX3
7BN, United Kingdom.

Telephone: +44 (0)1865 287568
Email: kjmorris-at-well.ox.ac.uk
Web-pages: http://www.well.ox.ac.uk/molecular-cytogenetics-and-microscopy

-----Original Message-----
X-from: david.knecht-at-uconn.edu [mailto:david.knecht-at-uconn.edu]
Sent: 12 April 2011 15:10
To: kjmorris-at-well.ox.ac.uk

Those discussions were about removing objectives that were stuck in the
turret. That was not a problem here. What is stuck is the spring loaded
barrel of the objective. I am trying to find out if putting some penetrant
on the barrel will have any chance of getting to the optics. Dave




-------------------------------------------------

Dr Keith J Morris
Molecular Cytogenetics and Microscopy Core
The Wellcome Trust Centre for Human Genetics
Roosevelt Drive
Oxford
OX3 7BN
United Kingdom

Tel: +44 ( 0 ) 1865 287568
Email: kjmorris-at-well.ox.ac.uk
HomePage: http://www.well.ox.ac.uk/molecular-cytogenetics-and-microscopy


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From: jquinn-at-ms.cc.sunysb.edu
Date: Thu, 21 Apr 2011 15:35:34 -0500
Subject: [Microscopy] Fwd: Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
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Folks -

It is pretty obvious from the paper's supporting documents
that the EDS/EDX spectrum is misidentified:
http://pubs.acs.org/doi/suppl/10.1021/ja908521s/suppl_file/ja908521s_si_001.pdf

NaK 1.04KeV
ZnL 1.01KeV
This is a common overlap, that like many people, I experience several times a week.

I hope the authors print a retraction.

-JQuinn



} A recent paper in JACS (do not want to provide citation intentionally)
} clams to have used EDS analysis in the TEM to determine presence of about
} 1% of Na in ZnO single crystals. Any comments on validity and prudence of
} such a claim?
}
} Krassimir Bozhilov





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From: p.ingram-at-cellbio.duke.edu
Date: Thu, 21 Apr 2011 15:43:35 -0500
Subject: [Microscopy] Re: Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
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Except of course for the possibility of the doublet of Oxygen K
(0.523 x 2 = 1.046 KeV) The sample is ZnO!

Peter I.



} ----------------------------------------------------------------------------
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--
Peter Ingram
Sr. Physicist
Adj. Professor of Pathology
Duke University Medical Center
PO Box 90319
DURHAM NC 27708-0319

Tel: 919 660-2695
Fax: 919 660-2671
Email: p.ingram-at-cellbio.duke.edu
Skype: ingramp

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From: bozzola-at-siu.edu
Date: Thu, 21 Apr 2011 15:54:40 -0500
Subject: [Microscopy] Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
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Follow-up questions to Peter and Bill:

1. Would WDS give a definitive identification?

2. Would using a variety of kV's using EDS give a better identification?

Thanks,

John Bozzola

-----------------------------------------------------
}
}
} Except  of course for the possibility of the doublet of Oxygen K
} (0.523 x 2 = 1.046 KeV)  The sample is ZnO!
}
} Peter I.
}
} } Dear Krassimir,
} }         1% is possible, but close to the limit of detectability.  I
} } presume that the EDS system has an ultrathin window or no window.  As to
} } the prudence, if the spectra show a bump at the right position, and there
} } is no possibility of interference from another element, (I don't have
} } access to a table of x-ray lines, but I know that Cu-L is somewhere near
} } Na-K.) I see nothing wrong with reporting it as Na.  At one time I was
} } looking for chlorinated hydrocarbons in clay samples, and I could see a
} } small bump where the Cl should be in some of the grains.  I also saw the
} } Ti-L alpha clearly and the Ti-L beta was the same size as the Cl and
} } obviously must be there.  This gave me confidence that the Cl bump was
} } also real.
} }                                         Yours,
} }                                             Bill
} }
} }
} }
} } X-from:   bozhilov-at-ucr.edu
} } To:     William.F.Tivol-at-aero.org
} } Date:   04/20/2011 01:02 PM
} } Subject:        [Microscopy] Na in ZnO
} }
} }
} }
} } A recent paper in JACS (do not want to provide citation intentionally)
} } clams to have used EDS analysis in the TEM to determine presence of about
} } 1% of Na in ZnO single crystals. Any comments on validity and prudence of
} } such a claim?
} }
} } Krassimir Bozhilov
} }
} }
} }
}
}
} --
} Peter Ingram
} Sr. Physicist
} Adj. Professor of Pathology
} Duke University Medical Center
} PO Box 90319
} DURHAM  NC  27708-0319


--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: voyles-at-engr.wisc.edu
Date: Thu, 21 Apr 2011 16:03:03 -0500
Subject: [Microscopy] Re: Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

On 4/21/2011 3:55 PM, bozzola-at-siu.edu wrote:
} ----------------------------------------------------------------------------
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}
} Follow-up questions to Peter and Bill:
}
} 1. Would WDS give a definitive identification?
}
} 2. Would using a variety of kV's using EDS give a better identification?

I'll add a third question: why is the Zn K to Zn L ratio so different in
the two EDS spectra in the supporting information? The ratio is much
greater than 1 for the first spectrum and much less than 1 for the
second spectrum.

Best wishes,
Paul


}
} Thanks,
}
} John Bozzola
}
} -----------------------------------------------------
} }
} }
} } Except  of course for the possibility of the doublet of Oxygen K
} } (0.523 x 2 = 1.046 KeV) Â The sample is ZnO!
} }
} } Peter I.
} }
} } } Dear Krassimir,
} } } Â Â Â Â 1% is possible, but close to the limit of detectability. Â I
} } } presume that the EDS system has an ultrathin window or no window. Â As to
} } } the prudence, if the spectra show a bump at the right position, and there
} } } is no possibility of interference from another element, (I don't have
} } } access to a table of x-ray lines, but I know that Cu-L is somewhere near
} } } Na-K.) I see nothing wrong with reporting it as Na. Â At one time I was
} } } looking for chlorinated hydrocarbons in clay samples, and I could see a
} } } small bump where the Cl should be in some of the grains. Â I also saw the
} } } Ti-L alpha clearly and the Ti-L beta was the same size as the Cl and
} } } obviously must be there. Â This gave me confidence that the Cl bump was
} } } also real.
} } } Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Yours,
} } } Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Bill
} } }
} } }
} } }
} } } X-from: Â bozhilov-at-ucr.edu
} } } To: Â Â William.F.Tivol-at-aero.org
} } } Date: Â 04/20/2011 01:02 PM
} } } Subject: Â Â Â Â [Microscopy] Na in ZnO
} } }
} } }
} } }
} } } A recent paper in JACS (do not want to provide citation intentionally)
} } } clams to have used EDS analysis in the TEM to determine presence of about
} } } 1% of Na in ZnO single crystals. Any comments on validity and prudence of
} } } such a claim?
} } }
} } } Krassimir Bozhilov
} } }
} } }
} } }
} }
} }
} } --
} } Peter Ingram
} } Sr. Physicist
} } Adj. Professor of Pathology
} } Duke University Medical Center
} } PO Box 90319
} } DURHAM Â NC Â 27708-0319
}
}


--
Paul Voyles
Materials Science and Engineering
University of Wisconsin, Madison
1509 University Ave, Rm 223
Madison, WI 53706-1595
voice: (608) 265-6740
fax: (608) 262-8353
voyles-at-engr.wisc.edu
http://tem.msae.wisc.edu

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From: nicholls-at-uic.edu
Date: Thu, 21 Apr 2011 16:14:10 -0500
Subject: [Microscopy] Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
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At 04:03 PM 4/21/2011, you wrote:



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S3c is an SEM spectrum and S5d is a TEM spectrum

Alan W Nicholls, PhD
Interim Associate Director - RRC
Director of Research Service Facility (Electron Microscopy)
Research Resources Center - East (M/C 337)
Room 110 Science and Engineering South Building
The University of Illinois at Chicago
845 West Taylor St
Chicago, IL 60607-7058

Tel: 312 996 1227
Fax: 312 996 8091
Office: Room 110

Web site www.rrc.uic.edu


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From: wesaia-at-iastate.edu
Date: Thu, 21 Apr 2011 16:59:45 -0500
Subject: [Microscopy] Re: Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I am basing my comments on the article citation provided by Jim Quinn.
http://pubs.acs.org/doi/suppl/10.1021/ja908521s/suppl_file/ja908521s_si_001.pdf

WDS should give a more definitive identification I am in the SEM lab now and don't know off the top of my head how well the WDS resolves Na-K and Zn-L. I know it does very well with Mo-L and S-K. I could check when I am back in the probe lab.

I doubt that different voltages would help much. It would alter the ratio between the lines at 9 keV and 1 keV, but it would not help to differentiate the Na and Zn portions of the peak near 1 keV.

Some of the peak at 1 keV will be due to an Oxygen sum peak, but sum peaks will be only fractions of the main peaks and the O peak at 0.53 keV is much smaller than the peak at 1 keV, so the portion due to O contribution is probably negligible.

Alan Nicholls suggested that the EDS spectrum in Fig S3-c is from an SEM while the spectrum in S5-d is from a TEM. That may be, but the images in part-a of the figures are both TEM images. The other graphics look the same. I would suppose the spectra are both from a TEM.

I can live with the mislabeling in the figures, but the fact that the peak at 1 kV is higher in the sample that was not doped with Na than in the one doped with Na would normally lead me to conclude that there is more Na in the undoped sample than in the doped one. I would normally except the Zn L and K lines to have a fixed ratio.

However, the background signal looks markedly different in the two spectra. Figure S3-c has background visible across the energy range. The O peak looks to be about 10% of the Zn-K peak. Figure S5-d shows very little background around 5 keV. The O peak is more than 50% of the Zn-K peak. Note that the ratio of O intensity to the intensity of the peak at 1 keV is roughly the same in both spectra. That tells me that the spectrum in S3-c was from an area facing more away from the EDS detector than the area used for S5-d. There is no definite difference in the peak at 1.0 keV due to the presence of Na.

The plots in S3-d prove nothing. They are predominantly from the Zn-L line.

Indeed, some serious revisions or retractions are in order.

Warren S.

-----Original Message-----
X-from: voyles-at-engr.wisc.edu [mailto:voyles-at-engr.wisc.edu]
Sent: Thursday, April 21, 2011 4:03 PM
To: wesaia-at-iastate.edu

On 4/21/2011 3:55 PM, bozzola-at-siu.edu wrote:
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} Follow-up questions to Peter and Bill:
}
} 1. Would WDS give a definitive identification?
}
} 2. Would using a variety of kV's using EDS give a better identification?

I'll add a third question: why is the Zn K to Zn L ratio so different in
the two EDS spectra in the supporting information? The ratio is much
greater than 1 for the first spectrum and much less than 1 for the
second spectrum.

Best wishes,
Paul


}
} Thanks,
}
} John Bozzola
}
} -----------------------------------------------------
} }
} }
} } Except  of course for the possibility of the doublet of Oxygen K
} } (0.523 x 2 = 1.046 KeV) Â The sample is ZnO!
} }
} } Peter I.
} }
} } } Dear Krassimir,
} } } Â Â Â Â 1% is possible, but close to the limit of detectability. Â I
} } } presume that the EDS system has an ultrathin window or no window. Â As to
} } } the prudence, if the spectra show a bump at the right position, and there
} } } is no possibility of interference from another element, (I don't have
} } } access to a table of x-ray lines, but I know that Cu-L is somewhere near
} } } Na-K.) I see nothing wrong with reporting it as Na. Â At one time I was
} } } looking for chlorinated hydrocarbons in clay samples, and I could see a
} } } small bump where the Cl should be in some of the grains. Â I also saw the
} } } Ti-L alpha clearly and the Ti-L beta was the same size as the Cl and
} } } obviously must be there. Â This gave me confidence that the Cl bump was
} } } also real.
} } } Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Yours,
} } } Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Bill
} } }
} } }
} } }
} } } X-from: Â bozhilov-at-ucr.edu
} } } To: Â Â William.F.Tivol-at-aero.org
} } } Date: Â 04/20/2011 01:02 PM
} } } Subject: Â Â Â Â [Microscopy] Na in ZnO
} } }
} } }
} } }
} } } A recent paper in JACS (do not want to provide citation intentionally)
} } } clams to have used EDS analysis in the TEM to determine presence of about
} } } 1% of Na in ZnO single crystals. Any comments on validity and prudence of
} } } such a claim?
} } }
} } } Krassimir Bozhilov
} } }
} } }
} } }
} }
} }
} } --
} } Peter Ingram
} } Sr. Physicist
} } Adj. Professor of Pathology
} } Duke University Medical Center
} } PO Box 90319
} } DURHAM Â NC Â 27708-0319
}
}


--
Paul Voyles
Materials Science and Engineering
University of Wisconsin, Madison
1509 University Ave, Rm 223
Madison, WI 53706-1595
voice: (608) 265-6740
fax: (608) 262-8353
voyles-at-engr.wisc.edu
http://tem.msae.wisc.edu

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From: William.F.Tivol-at-aero.org
Date: 04/21/2011 02:09 PM
Subject: [Microscopy] Re: Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Peter, John, Paul, and Warren,
I must admit that I haven't used WDS, but I think it has the
energy resolution (equivalently, wavelength resolution) to resolve
[almost] all overlaps. Since it works by diffraction from a bent crystal,
a sufficient camera length would resolve the smallest difference in Bragg
angles. Perhaps a WDS expert can comment on what is available in
commercial apparatus. I don't think that varying the kV would help, since
the overvoltage would be the same for the two lines to be separated, so
only the intensities of the lines would vary, not their ratio. The
occurrence of two O x-rays can be investigated by lowering the beam
current so that the x-ray flux to the detector is low enough so no two O
x-rays will enter the detector at intervals shorter than its response
time. I think Warren's discussion of the differences among the spectra is
definitive.
Yours,
Bill



X-from: voyles-at-engr.wisc.edu
To: William.F.Tivol-at-aero.org







On 4/21/2011 3:55 PM, bozzola-at-siu.edu wrote:
}
} Follow-up questions to Peter and Bill:
}
} 1. Would WDS give a definitive identification?
}
} 2. Would using a variety of kV's using EDS give a better identification?

I'll add a third question: why is the Zn K to Zn L ratio so different in
the two EDS spectra in the supporting information? The ratio is much
greater than 1 for the first spectrum and much less than 1 for the
second spectrum.

Best wishes,
Paul


}
} Thanks,
}
} John Bozzola
}
} }
} } Except  of course for the possibility of the doublet of Oxygen K
} } (0.523 x 2 = 1.046 KeV) Â The sample is ZnO!
} }
} } Peter I.
} }




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From: bozhilov-at-ucr.edu
Date: Thu, 21 Apr 2011 17:45:41 -0500
Subject: [Microscopy] Re: Na in ZnO

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I completely agree with Warren's comments below. Just I need to point out that all these considerations hold true for analysis of flat bulk specimens (SEM and microprobe).

EDS analysis of thin specimens in the TEM is strongly dependent on sample thickness, geometry of the particle and position of the point of analysis with respect to the grid bars of the supporting TEM grid.
Quantification and comparison of peak profile and intensity for low energy L lines with high energy K lines is meaningless unless proper absorption correction and thickness are taken into account.

Also when analysis is done of a particle close to the TEM grid bars secondary scattering and fluorescence from grid bar material changes the peak intensities ratios between low energy (below ~ 1.5 KeV) and higher energy peaks. Thus quantitative comparison of peak intensities among different family of lines cannot be used as a reliable factor in the TEM.


Krassimir.



On Apr 21, 2011, at 3:04 PM, wesaia-at-iastate.edu wrote:

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} I am basing my comments on the article citation provided by Jim Quinn.
} http://pubs.acs.org/doi/suppl/10.1021/ja908521s/suppl_file/ja908521s_si_001.pdf
}
} WDS should give a more definitive identification I am in the SEM lab now and don't know off the top of my head how well the WDS resolves Na-K and Zn-L. I know it does very well with Mo-L and S-K. I could check when I am back in the probe lab.
}
} I doubt that different voltages would help much. It would alter the ratio between the lines at 9 keV and 1 keV, but it would not help to differentiate the Na and Zn portions of the peak near 1 keV.
}
} Some of the peak at 1 keV will be due to an Oxygen sum peak, but sum peaks will be only fractions of the main peaks and the O peak at 0.53 keV is much smaller than the peak at 1 keV, so the portion due to O contribution is probably negligible.
}
} Alan Nicholls suggested that the EDS spectrum in Fig S3-c is from an SEM while the spectrum in S5-d is from a TEM. That may be, but the images in part-a of the figures are both TEM images. The other graphics look the same. I would suppose the spectra are both from a TEM.
}
} I can live with the mislabeling in the figures, but the fact that the peak at 1 kV is higher in the sample that was not doped with Na than in the one doped with Na would normally lead me to conclude that there is more Na in the undoped sample than in the doped one. I would normally except the Zn L and K lines to have a fixed ratio.
}
} However, the background signal looks markedly different in the two spectra. Figure S3-c has background visible across the energy range. The O peak looks to be about 10% of the Zn-K peak. Figure S5-d shows very little background around 5 keV. The O peak is more than 50% of the Zn-K peak. Note that the ratio of O intensity to the intensity of the peak at 1 keV is roughly the same in both spectra. That tells me that the spectrum in S3-c was from an area facing more away from the EDS detector than the area used for S5-d. There is no definite difference in the peak at 1.0 keV due to the presence of Na.
}
} The plots in S3-d prove nothing. They are predominantly from the Zn-L line.
}
} Indeed, some serious revisions or retractions are in order.
}
} Warren S.
}
} -----Original Message-----
} X-from: voyles-at-engr.wisc.edu [mailto:voyles-at-engr.wisc.edu]
} Sent: Thursday, April 21, 2011 4:03 PM
} To: wesaia-at-iastate.edu
} Subject: [Microscopy] Re: Na in ZnO
}
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} On 4/21/2011 3:55 PM, bozzola-at-siu.edu wrote:
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} } Follow-up questions to Peter and Bill:
} }
} } 1. Would WDS give a definitive identification?
} }
} } 2. Would using a variety of kV's using EDS give a better identification?
}
} I'll add a third question: why is the Zn K to Zn L ratio so different in
} the two EDS spectra in the supporting information? The ratio is much
} greater than 1 for the first spectrum and much less than 1 for the
} second spectrum.
}
} Best wishes,
} Paul
}
}
} }
} } Thanks,
} }
} } John Bozzola
} }
} } -----------------------------------------------------
} } }
} } }
} } } Except B of course for the possibility of the doublet of Oxygen K
} } } (0.523 x 2 = 1.046 KeV) B The sample is ZnO!
} } }
} } } Peter I.
} } }
} } } } Dear Krassimir,
} } } } B B B B 1% is possible, but close to the limit of detectability. B I
} } } } presume that the EDS system has an ultrathin window or no window. B As to
} } } } the prudence, if the spectra show a bump at the right position, and there
} } } } is no possibility of interference from another element, (I don't have
} } } } access to a table of x-ray lines, but I know that Cu-L is somewhere near
} } } } Na-K.) I see nothing wrong with reporting it as Na. B At one time I was
} } } } looking for chlorinated hydrocarbons in clay samples, and I could see a
} } } } small bump where the Cl should be in some of the grains. B I also saw the
} } } } Ti-L alpha clearly and the Ti-L beta was the same size as the Cl and
} } } } obviously must be there. B This gave me confidence that the Cl bump was
} } } } also real.
} } } } B B B B B B B B B B B B B B B B B B B B Yours,
} } } } B B B B B B B B B B B B B B B B B B B B B B Bill
} } } }
} } } }
} } } }
} } } } X-from: B bozhilov-at-ucr.edu
} } } } To: B B William.F.Tivol-at-aero.org
} } } } Date: B 04/20/2011 01:02 PM
} } } } Subject: B B B B [Microscopy] Na in ZnO
} } } }
} } } }
} } } }
} } } } A recent paper in JACS (do not want to provide citation intentionally)
} } } } clams to have used EDS analysis in the TEM to determine presence of about
} } } } 1% of Na in ZnO single crystals. Any comments on validity and prudence of
} } } } such a claim?
} } } }
} } } } Krassimir Bozhilov
} } } }
} } } }
} } } }
} } }
} } }
} } } --
} } } Peter Ingram
} } } Sr. Physicist
} } } Adj. Professor of Pathology
} } } Duke University Medical Center
} } } PO Box 90319
} } } DURHAM B NC B 27708-0319
} }
} }
}
}
} --
} Paul Voyles
} Materials Science and Engineering
} University of Wisconsin, Madison
} 1509 University Ave, Rm 223
} Madison, WI 53706-1595
} voice: (608) 265-6740
} fax: (608) 262-8353
} voyles-at-engr.wisc.edu
} http://tem.msae.wisc.edu
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11, 22 -- From bozhilov-at-ucr.edu Thu Apr 21 17:45:41 2011
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From: John.Mardinly-at-asu.edu
Date: Thu, 21 Apr 2011 18:26:42 -0500
Subject: [Microscopy] Re: Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Also, the line profiles in Figure 1.3 are clearly just the thickness
profiles of the cylindrical wire. EELS presents no easy answers either,
as the Zn L2,3 edge is a delayed edge starting at 1040 eV and ending
around 1150 eV with another little dip at 1207 eV, and although the Na K
edge is a sharp edge, it is at 1070eV, right in the middle of a huge
background presented by the Zn delayed edge. Well, students need to
learn from their mistakes, and there is a lot to learn here.

John Mardinly,
ASU

-----Original Message-----
X-from: bozhilov-at-ucr.edu [mailto:bozhilov-at-ucr.edu]
Sent: Thursday, April 21, 2011 3:53 PM
To: John Mardinly

I completely agree with Warren's comments below. Just I need to point
out that all these considerations hold true for analysis of flat bulk
specimens (SEM and microprobe).

EDS analysis of thin specimens in the TEM is strongly dependent on
sample thickness, geometry of the particle and position of the point of
analysis with respect to the grid bars of the supporting TEM grid.
Quantification and comparison of peak profile and intensity for low
energy L lines with high energy K lines is meaningless unless proper
absorption correction and thickness are taken into account.

Also when analysis is done of a particle close to the TEM grid bars
secondary scattering and fluorescence from grid bar material changes the
peak intensities ratios between low energy (below ~ 1.5 KeV) and
higher energy peaks. Thus quantitative comparison of peak intensities
among different family of lines cannot be used as a reliable factor in
the TEM.


Krassimir.



On Apr 21, 2011, at 3:04 PM, wesaia-at-iastate.edu wrote:

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} I am basing my comments on the article citation provided by Jim Quinn.
}
http://pubs.acs.org/doi/suppl/10.1021/ja908521s/suppl_file/ja908521s_si_
001.pdf
}
} WDS should give a more definitive identification I am in the SEM lab
now and don't know off the top of my head how well the WDS resolves Na-K
and Zn-L. I know it does very well with Mo-L and S-K. I could check when
I am back in the probe lab.
}
} I doubt that different voltages would help much. It would alter the
ratio between the lines at 9 keV and 1 keV, but it would not help to
differentiate the Na and Zn portions of the peak near 1 keV.
}
} Some of the peak at 1 keV will be due to an Oxygen sum peak, but sum
peaks will be only fractions of the main peaks and the O peak at 0.53
keV is much smaller than the peak at 1 keV, so the portion due to O
contribution is probably negligible.
}
} Alan Nicholls suggested that the EDS spectrum in Fig S3-c is from an
SEM while the spectrum in S5-d is from a TEM. That may be, but the
images in part-a of the figures are both TEM images. The other graphics
look the same. I would suppose the spectra are both from a TEM.
}
} I can live with the mislabeling in the figures, but the fact that the
peak at 1 kV is higher in the sample that was not doped with Na than in
the one doped with Na would normally lead me to conclude that there is
more Na in the undoped sample than in the doped one. I would normally
except the Zn L and K lines to have a fixed ratio.
}
} However, the background signal looks markedly different in the two
spectra. Figure S3-c has background visible across the energy range. The
O peak looks to be about 10% of the Zn-K peak. Figure S5-d shows very
little background around 5 keV. The O peak is more than 50% of the Zn-K
peak. Note that the ratio of O intensity to the intensity of the peak at
1 keV is roughly the same in both spectra. That tells me that the
spectrum in S3-c was from an area facing more away from the EDS detector
than the area used for S5-d. There is no definite difference in the peak
at 1.0 keV due to the presence of Na.
}
} The plots in S3-d prove nothing. They are predominantly from the Zn-L
line.
}
} Indeed, some serious revisions or retractions are in order.
}
} Warren S.
}
} -----Original Message-----
} X-from: voyles-at-engr.wisc.edu [mailto:voyles-at-engr.wisc.edu]
} Sent: Thursday, April 21, 2011 4:03 PM
} To: wesaia-at-iastate.edu
} Subject: [Microscopy] Re: Na in ZnO
}
}
}
}
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} On 4/21/2011 3:55 PM, bozzola-at-siu.edu wrote:
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} }
} } Follow-up questions to Peter and Bill:
} }
} } 1. Would WDS give a definitive identification?
} }
} } 2. Would using a variety of kV's using EDS give a better
identification?
}
} I'll add a third question: why is the Zn K to Zn L ratio so different
in
} the two EDS spectra in the supporting information? The ratio is much
} greater than 1 for the first spectrum and much less than 1 for the
} second spectrum.
}
} Best wishes,
} Paul
}
}
} }
} } Thanks,
} }
} } John Bozzola
} }
} } -----------------------------------------------------
} } }
} } }
} } } Except B of course for the possibility of the doublet of Oxygen K
} } } (0.523 x 2 = 1.046 KeV) B The sample is ZnO!
} } }
} } } Peter I.
} } }
} } } } Dear Krassimir,
} } } } B B B B 1% is possible, but close to the limit of
detectability. B I
} } } } presume that the EDS system has an ultrathin window or no window. B
As to
} } } } the prudence, if the spectra show a bump at the right position, and
there
} } } } is no possibility of interference from another element, (I don't
have
} } } } access to a table of x-ray lines, but I know that Cu-L is somewhere
near
} } } } Na-K.) I see nothing wrong with reporting it as Na. B At one time I
was
} } } } looking for chlorinated hydrocarbons in clay samples, and I could
see a
} } } } small bump where the Cl should be in some of the grains. B I also
saw the
} } } } Ti-L alpha clearly and the Ti-L beta was the same size as the Cl
and
} } } } obviously must be there. B This gave me confidence that the Cl bump
was
} } } } also real.
} } } } B B B B B B B B B B B B B B B B B B B B Yours,
} } } } B B B B B B B B B B B B B B B B B B B B B B
Bill
} } } }
} } } }
} } } }
} } } } X-from: B bozhilov-at-ucr.edu
} } } } To: B B William.F.Tivol-at-aero.org
} } } } Date: B 04/20/2011 01:02 PM
} } } } Subject: B B B B [Microscopy] Na in ZnO
} } } }
} } } }
} } } }
} } } } A recent paper in JACS (do not want to provide citation
intentionally)
} } } } clams to have used EDS analysis in the TEM to determine presence of
about
} } } } 1% of Na in ZnO single crystals. Any comments on validity and
prudence of
} } } } such a claim?
} } } }
} } } } Krassimir Bozhilov
} } } }
} } } }
} } } }
} } }
} } }
} } } --
} } } Peter Ingram
} } } Sr. Physicist
} } } Adj. Professor of Pathology
} } } Duke University Medical Center
} } } PO Box 90319
} } } DURHAM B NC B 27708-0319
} }
} }
}
}
} --
} Paul Voyles
} Materials Science and Engineering
} University of Wisconsin, Madison
} 1509 University Ave, Rm 223
} Madison, WI 53706-1595
} voice: (608) 265-6740
} fax: (608) 262-8353
} voyles-at-engr.wisc.edu
} http://tem.msae.wisc.edu
}
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From: donovan-at-uoregon.edu
Date: Thu, 21 Apr 2011 19:49:23 -0500
Subject: [Microscopy] Re: Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

All,
Even with WDS there is some overlap but it can be corrected for
quantitatively using an interference correction that includes the
matrix effects relative to the standard used for the interference
calibration since the absorption correction is large for Na Ka (see
the Na ABSCOR below) in the presence of Zn and O. Note that the main
overlap with Na Ka is with the Zn Lb1 line not the Zn La1 line.

From my CalcZAF program for Na in ZnO (assuming 50:50:1 ratio) using
FFAST MACs and the Armstrong phi-rho-z corrections (at 20 keV):

SAMPLE: 1, ITERATIONS: 0, Z-BAR: 25.59163

ELEMENT ABSCOR FLUCOR ZEDCOR ZAFCOR STP-POW
BKS-COR F(x)u Ec Eo/Ec MACs
Zn
ka .9971 1.0000 1.0512 1.0482 1.0764 .9766 .9867 9.6590
2.0706 37.1266
Na
ka 5.3842 1.0000 .9175 4.9399 .8342 1.0998 .1426 1.0730
18.6393 6769.94
O ka 3.0800 .9978 .8383 2.5762 .7567 1.1078 .1931
.5317 37.6152 4838.20

ELEMENT K-RAW K-VALUE ELEMWT% OXIDWT% ATOMIC% FORMULA KILOVOL
Zn ka .00000 .76214 79.885 ----- 49.505 .980 20.00
Na ka .00000 .00114 .562 ----- .990 .020 20.00
O ka .00000 .07590 19.553 ----- 49.505 .980 20.00
TOTAL: 100.000 ----- 100.000 1.980

Apologies for the formatting- but Nestor rules!

I do not have a measurement of Na in ZnO handy but I do for ZnTe
(relative to pure Zn metal for Zn and Nepheline for Na at 20 keV). In
ZnTe I get an apparent wt% concentration of .028 +/- 0.010 Na or 280
+/- 100 PPM but it's within 3 std devs of zero so the question is: is
it real? I have no idea what the true concentration of Na in this
ZnTe is, but it's supposed to be 5 "nines" pure material (metals
basis of course).

Without an interference correction in WDS (using a TAP crystal), one
gets an apparent wt% concentration of 1.68 +/- 0.009 Na, so an
interference correction is important even in WDS.

I might look into this further since I have a ZnO single crystal
standard in one of my mounts.
john


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From: swalck-at-southbaytech.com
Date: Thu, 21 Apr 2011 20:44:54 -0500
Subject: [Microscopy] Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The discussion that is going on is interesting and has digressed a bit to
the resolution in WDS. Of course there will be difficulties in WDS, too,
besides those of the instrument. One important one is that Na moves during
analysis. Anyone who has ever looked at a glass with Na in it can attest to
that. So there are also material issues. Especially since the samples are
nanowires and WDS analysis in a microprobe would be more than a little
tricky on one of them.

I'd like to make some comments about the original topic and a general
statement.
Paul Voyles touched on the topic of the ZnK to ZnL ratio. To do appropriate
analysis in the TEM, you have to have a sufficiently thin sample that meets
the thin film criteria. The principle concern of course is absorption. If
the L to K ratio is not a constant and is smaller than a standard, then the
sample is absorbing the lower energy X-rays and it is too thick. I
published a little article on resolving severe peak overlaps in Microscopy
Today a couple of years back that discusses the issue more fully. In one of
their two spectra, there is a great deal of absorption of the low energy
peaks. Never mentioned and never caught by reviewers!

The authors should have caught some of these points that contributors on the
Listserver have pointed out, but certainly the reviewers should have. They
should have caught the overlap issue in XEDS in the TEM as did Krassimir.
Come on, 1% of a relatively light element with a severe peak overlap? No
analysis information? No confidence value? No mention of the analysis
technique at all? That, in itself, should have been caught. My concern is:
why wasn't it caught? I'm afraid of the answer. It means people aren't
learning, people aren't teaching, and they are making deductions from the
data that they just don't understand. Is it because the instruments are too
easy to use and take data that "looks" good? Or is it people are too rushed
and pushed to publish and don't take the time to do it right and understand
the data and the data collection process? I've seen it before. There are
experts at institutions on instrumentation, but they aren't consulted or
included on papers and the result is that garbage is published.

I had a bad day today and just decided to rant. Sorry about that.

-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

eMail: SWalck-at-SouthBayTech.com
Phone: 949-492-2600
Toll Free: 1-800-728-2233 (USA)
Fax: 949-492-1499

www.SouthBayTech.com



-----Original Message-----
X-from: bozhilov-at-ucr.edu [mailto:bozhilov-at-ucr.edu]
Sent: Wednesday, April 20, 2011 1:01 PM
To: swalck-at-southbaytech.com

A recent paper in JACS (do not want to provide citation intentionally) clams
to have used EDS analysis in the TEM to determine presence of about 1% of Na
in ZnO single crystals. Any comments on validity and prudence of such a
claim?

Krassimir Bozhilov
Central Facility for Advanced Microscopy and Microanalysis
University of California,
Riverside, CA 92521

phone 951 827 2998
fax 951 827 2489





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From: donovan-at-uoregon.edu
Date: Thu, 21 Apr 2011 21:25:45 -0500
Subject: [Microscopy] Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Scott,
You are correct of course that Na intensities can change over time,
particularly in glasses. So even though the Na in Zn measurements I
mentioned previously were in materials that did not contain Na, I
still used a time dependent intensity (TDI) correction to extrapolate
back to zero time. I pretty much do a TDI measurement routinely now
because it doesn't hardly take any longer (a little software overhead
is all) and you never know when it might be handy to have the
intensity change over time well documented.

On the point about nano-wires and WDS I would just mention that one
can utilize geometric models to account for particle and rod shapes
smaller than the typical EPMA interaction volume (most of my EPMA
work nowadays is characterizing compositions of thin films around 50
- 100 nm thick on electron opaque substrates), but it is helpful to
have some knowledge of the specimen size and shape to make an
accurate correction for such particle or rod geometries.

That also brings up the issue you mention of the Zn K and L lines. I
would just add that given a choice I would probably perform WDS
analysis using Zn La and Na Ka because the differences in the various
corrections will be much smaller than the case for Zn Ka, since Zn La
and Na Ka are very similar in energy (with regard to the absorption
correction), though the presence of the Zn L edges are still
problematic for the background correction. That is, the background
intensity on the Na Ka side is significantly lower than on the Zn La side.

It's a non trivial problem for sure.
john


At 06:48 PM 4/21/2011, you wrote:



} ----------------------------------------------------------------------------
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From: wesaia-at-iastate.edu
Date: Thu, 21 Apr 2011 21:57:38 -0500
Subject: [Microscopy] Re: Na in ZnO

Contents Retrieved from Microscopy Listserver Archives
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He apparently left HTML mode on and the listserver bounced his message. ws
________________________________________
X-from: woody [woody-at-albe24.com]
Sent: Thursday, April 21, 2011 8:26 PM
To: wesaia-at-iastate.edu; MSA

I agree 100% with Warren. It is just about impossible using the
"standardless" mode commonly available from the manufacturers. I would
never trust the background subtraction and deconvolutions used to
reliably detect Na in a Zn rich compound at 1% levels with "canned"
standards.

Perhaps using the fully standardized mode with like-composition material
for the standards and a well integrated, slowly collected (high
filtering) spectrum, it may be possible but even then I would be very
cautious.

I also agree that changing the excitation voltage will have no bearing
on resolving the overlap issue.

My memory is a bit foggy, but when I had my Microspec WDS, I believe I
could resolve the Na/Zn overlap. In general, how well depends on the
how the WDS is setup (slit width, etc) and crystal quality.

Agree with all other comments Warren mad also...

Woody
Senior Electron Microscopist
AREVA NP


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From: kraftpiano-at-gmail.com
Date: Fri, 22 Apr 2011 02:02:54 -0500
Subject: [Microscopy] Technics Hummer II question.

Contents Retrieved from Microscopy Listserver Archives
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Thank you in advance for assistance- this list is definitely worth more than my entire book collection!

I have a Technics Hummer II that does both plating and etching. Recently I started having issues with the voltage going to the target "Flashing" periodically. I traced the issue to a second HV cable which was just dangling in the cabinet of the coater, and it was near a ground line and was arcing with the ground.

My question is this: There seems to be two red cables coming out of the "Etch/Plate" switch box to the right of the coating chamber. One of them reaches the top of the chamber and can therefore connect to the target, the other can not. What is the second, shorter one for? For now I've got it wrapped in electrical tape to prevent the arcing issue, but I am curious about that. I've read the manual (An original!) cover to cover and found no reference to that at all- nor did I find a schematic or anything else that might be helpful. (Although it was interesting that when the manual was printed in 1976, an Au/Pd target cost $100.00- I doubt they'd still honor that price!)

This is more of a curiosity than anything else, the coater works fine now that I've got the second lead taped off, but I still want to know what it is for...

--Justin A. Kraft

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From: nizets2-at-yahoo.com
Date: Fri, 22 Apr 2011 02:08:01 -0500
Subject: [Microscopy] problem with compressed air

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi to all!
 
We have a major problem with compressed air for our Tecnai G20 TEM. I’ll try to
be as precise as possible but in the end I think that the answer should be quite
standard.
 
I can remember that in the end of last year we had a discussion on the list
about how important it was to make sure that the compressed air arriving at the
TEM is dry to avoid wasting the valves. I took this message seriously and
reviewed our own system but I found it to be well conceived since we had (1) a
large pressure container which can collect a large volume of water between the
compressor and the pipes. (2) a kind of filter after the container, although I
admit I don’t really know its function. I guessed it was there to retain water.
 
The problem itself: about 2 weeks ago during a routine check we noticed that the
small container located in the flow meter rack, which purpose is to collect the
rest of condensed water from the pipes and which remained completely dry for 5
years was completely full with water. At that time it seemed that we came in
time and the water did not overflow in the tubing to the microscope parts. The
container was purged.
Incidentally, several days later we had a planned power cutoff because of works
on the main line and I decided to switch off the microscope completely. I was
confident that with the power off there was no risk for the microscope until the
problem of condensed water was solved by the engineers. However, several days
later, with the system still switched off, we noticed again that the container
in the flow meter rack was completely full, this time we could also see water in
the transparent tubing going to the microscope. Some tubes are blue so we can’t
see through. Now we blocked the compressed air entry to the flow meter rack with
a valve but I need advices for the cleaning steps.
The main question is: may I clean the tubes myself or is there a risk that I
make a major mistake?
And then, if I can do it myself, how should I proceed? What should I be aware
of?
I have nitrogen and SF6 tanks at my disposal to dry the tubes if it is
necessary.
 
Many thanks in advance.
I hope America can enjoy an early summer like we do in Europe.

Stephane


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From: nizets2-at-yahoo.com
Date: Fri, 22 Apr 2011 02:18:17 -0500
Subject: [Microscopy] Osmium, freeze substitution, and immonogenicity

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi!

You say that you want to label a surface antigen right?
In this case you may try to make the immuno reaction before the fixation, then
the following steps can't disturb the immuno reaction.

Incidentally I remember an interesting finding of Prof Walther, you may want to
check it out:
http://www.ncbi.nlm.nih.gov/pubmed/18445157

Regards,

Stephane

 


----- Original Message ----
X-from: "reinhard.rachel-at-biologie.uni-regensburg.de"
{reinhard.rachel-at-biologie.uni-regensburg.de}
To: nizets2-at-yahoo.com
Sent: Mon, April 18, 2011 9:25:53 PM

} We are using high-pressure freezing along with freeze substitution to try
} preserving the structure of Arabidopsis pollen.  One of the challenges is
} preserving the pollen kitt (tryphine) on the surface of the pollen which
} mostly comprises of lipids and sterol-esters.  We have attempted to use just

} paraformaldehyde (2%) and glutaraldehyde (0.2%) in the freeze substitution
} fixative in the hopes that the proteinaceous components of the pollen kitt
} would be sufficiently fixed to retain its structure after embedding but this

} has clearly shown to not be the case. 

first, I do not have any experience with plant material, I have to admit.
I can imagine that bio-material with lots of lipids and sterol esters is
difficult to preserve.
Whether the material is "sufficiently fixed to retain its structure after
embedding", not only depends on the aldehydes but may also depend on the
solvent, and the resin. You do not write which solvent is used, acetone, or
ethanol, methanol, or something else?
One of the tricky tasks is to find the best solvent for substitution, along
with a good time schedule. Not easy.
In addition, you don't know which embedding medium is to be used - which is
usually infiltrated at -30, 0 C, or even room temp, but under these conditions,
the liquid, monomer embedding medium is an organic solvent, which may / will
extract some of the (hydrophobic) bio-material, although we don't like this to
happen ...

} Our final option would be to try varying concentrations of osmium (which is

} known to fix lipid components) but we are very concerned about loss of
} immunogenicity (which we will require from the protocol). 

I do not trust OsO4 too much - I have seen too many cases where "solvent" +
0.5 (0.25) % Uac, plus aldehyde plus 2-5% Water (Yes!!) has been superior to
adding OsO4 in any concentration.
What I would try first: solvent + 0.5% Uranyl Acetate, aldehyde, (water).

} Does anyone have any experience with the use of osmium in low temperature
} freeze substitution protocols where immunogenicity is adequately preserved?


I recall that those who have tried, reported some 0.0x or up to 0.x % OsO4 (x
= 1 - 2), in acetone ...
See above: try to omit OsO4 completely. Only use UAc. Worth a try.
Alternatively: try to freeze-substitute with resin monomer, already present at
very low temp. in the solvent. Epoxy was seen to act as fixative during
freeze-substitution. see Matsko and M端ller 2005 JSB

kind regards,
Reinhard

--
Prof. Dr. Reinhard Rachel
Universitaet Regensburg
Centre for EM / Anatomy
Faculty for Biology&Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

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27, 36 -- Date: Fri, 22 Apr 2011 00:18:16 -0700 (PDT)
27, 36 -- From: Stephane Nizet {nizets2-at-yahoo.com}
27, 36 -- Subject: Re: [Microscopy] Osmium, freeze substitution, and immonogenicity
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From: protrain-at-emcourses.com
Date: Fri, 22 Apr 2011 03:30:11 -0500
Subject: [Microscopy] problem with compressed air

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Stephane

Firstly I feel there is a misunderstanding in relation to the compressed air and moisture. Moisture, anywhere in the system, is a big problem. The compressed air when generated or contained in a moist zone will carry the moisture to the control valves which usually have aluminium bases. When an aluminium control valve becomes moist it will oxidise, which ultimately damages the valve and causes an air leek; hissing!

How to minimise the damage that your problem may cause? Firstly drain ALL of the compressed air containers, there should be a tap at the base of each.

Now it is down to ideas on cleaning the lines. If it was me I would disconnect the input line to the microscope and blow through the pipes with compressed air from another "dry" source or from as gas bottle (nitrogen would be fine). Cleaning the actuation valves without taking them all apart and blowing though is I think an impossible task.

Good luck buddy!

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com




.

-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: 22 April 2011 08:09
To: protrain-at-emcourses.com

Hi to all!
Â
We have a major problem with compressed air for our Tecnai G20 TEM. I’ll try to
be as precise as possible but in the end I think that the answer should be quite
standard.
Â
I can remember that in the end of last year we had a discussion on the list
about how important it was to make sure that the compressed air arriving at the
TEM is dry to avoid wasting the valves. I took this message seriously and
reviewed our own system but I found it to be well conceived since we had (1) a
large pressure container which can collect a large volume of water between the
compressor and the pipes. (2) a kind of filter after the container, although I
admit I don’t really know its function. I guessed it was there to retain water.
Â
The problem itself: about 2 weeks ago during a routine check we noticed that the
small container located in the flow meter rack, which purpose is to collect the
rest of condensed water from the pipes and which remained completely dry for 5
years was completely full with water. At that time it seemed that we came in
time and the water did not overflow in the tubing to the microscope parts. The
container was purged.
Incidentally, several days later we had a planned power cutoff because of works
on the main line and I decided to switch off the microscope completely. I was
confident that with the power off there was no risk for the microscope until the
problem of condensed water was solved by the engineers. However, several days
later, with the system still switched off, we noticed again that the container
in the flow meter rack was completely full, this time we could also see water in
the transparent tubing going to the microscope. Some tubes are blue so we can’t
see through. Now we blocked the compressed air entry to the flow meter rack with
a valve but I need advices for the cleaning steps.
The main question is: may I clean the tubes myself or is there a risk that I
make a major mistake?
And then, if I can do it myself, how should I proceed? What should I be aware
of?
I have nitrogen and SF6 tanks at my disposal to dry the tubes if it is
necessary.
Â
Many thanks in advance.
I hope America can enjoy an early summer like we do in Europe.

Stephane


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3, 34 -- From: Stephane Nizet {nizets2-at-yahoo.com}
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From: ALawrence-at-entomology.msstate.edu
Date: Mon, 25 Apr 2011 10:49:22 -0500
Subject: [Microscopy] Microscopy and Microanalysis 2011 Nashville, TN

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings,

To all students (or those of you who might have students) attending the
2011 M&M meeting in Nashville, TN, please consider the student bursary
program offered by MSA. The purpose of these bursaries is to encourage
students to attend the annual MSA/MAS Microscopy and Microanalysis
meeting, where they can meet and interact with the established
microscopy community while defraying some meeting costs.

Students work for 20 hours (or up to 40 hours) during the meeting and
pre-meeting events and are paid $10 an hour. The jobs involve such
things as providing support in the different symposia (helping with
audio-visual needs, maintaining an attendance count, and helping
speakers set up for their presentation), staffing the volunteer office,
monitoring use of the Internet Café, and helping with vendor tutorials
and poster set-up. Payment is given as a check at the end of the
meetings or when the student leaves Nashville.

Once the task list has been finalized, each bursary will be contacted
and allowed to choose the times and activities they would like to work.
Many times they end up *working* sessions they would attend anyway.
There is an added bonus of $10 cash meal allotment for each morning
and/or afternoon worked and a meeting shirt.

If anyone would like to participate in the bursary program, please
check the *I wish to apply for a student bursary* box in section 2
of the registration form. Bursary space is limited, so sign-up early.
Applicants for the bursaries must be members of MSA or MAS, enrolled as
students at a recognized educational institution, and have paid the
registration fee.

For those *non-students* volunteers are needed to help with the
above mentioned meeting activities as well. Although not paid on an
hourly basis as the student bursaries, volunteers do receive the same
cash allotment for meals and shirt. Plus they also have the
opportunity to interact more with the microscopy community as they
assist with meeting tasks.

If anyone has any questions about the bursary/volunteer program, or
would like to participate, please contact:

Amanda Lawrence
Institute for Imaging and Analytical Technologies
Mississippi State University
662-325-3019
alawrence-at-i2at.msstate.edu




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From: lkerr-at-mbl.edu
Date: Mon, 25 Apr 2011 13:13:59 -0500
Subject: [Microscopy] Philips 300 TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A colleague has a functional Philips 300 TEM that he needs to have removed within the next two weeks. He is willing to give it away, all you have to do is remove it. It is located at Providence College in Providence, RI.

Please contact him directly as he is not on this list.
Joseph A DeGiorgis, PhD
Biology Department
Providence College
Providence, RI 02 918-0001
jdegiorg-at-providence.edu
508-292-4605 (Cell)

Thanks,
Louie

--


Louis Kerr
lkerr-at-mbl.edu

Research and Education Support Coordinator
Marine Biological Laboratory
7 MBL Street
Woods Hole, MA 02543
508-289-7273
508-540-6902 (FAX)
508-292-0289 (Cell phone)

VISIT OUR WEB SITES:
www.mbl.edu
www.courses.mbl.edu

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From: nizets2-at-yahoo.com
Date: Tue, 26 Apr 2011 03:08:52 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thanks to all who offered their advices. I have unplugged all the lines and they
all contained water, but I am quite sure that the water was lying in the bottom
because the system was off so there was no air movement. We'll probably replace
the lines because we are almost sure that the water contained some oil. It is
still a mystery why this happened but I don't want to care about it anymore. In
the future we'll connect an N2 bottle in place of compressed air for the valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct words
here, to better reflect my thoughts).

Regards,

Stephane


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From: raristau-at-ims.uconn.edu
Date: Tue, 26 Apr 2011 09:41:12 -0500
Subject: [Microscopy] TEM of magnetic particles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers

I have a request for imaging magnetic nanoparticles in TEM. The particles
are currently in dry powder form. They are easily attracted to a small
permanent magnet. My initial reaction is to refuse the request for fear of
coating the objective lens with magnetic particles.

However, perhaps someone has successfully imaged such and can advise a safe
method for introducing them into the TEM.

Cheers
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




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From: paul_hazelton-at-umanitoba.ca
Date: Tue, 26 Apr 2011 10:14:56 -0500
Subject: [Microscopy] Re: TEM of magnetic particles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Roger

You are right in a sense. The biggest problem with magnetic particles
is that they are magnetic. My biggest concern would be could you even
get an image that did not exhibit serious aberration as a result of the
magnetic field, small as it is, interacting with the electrons in the
beam. That may well be the biggest problem.

paul


--
Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: Josef.Zweck-at-physik.uni-regensburg.de
Date: Tue, 26 Apr 2011 10:16:23 -0500
Subject: [Microscopy] Antw: TEM of magnetic particles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Roger,

no problem with magnetic nanoparticles - this is one of my specialities, and I
do it all the time with no problem at all. Just take care that they are
dispersed, by creating a suspension in water, shaking all particles apart by a
supersonic bath andd then drip a droplet on a holey carbon grid, before they
re-coagulate. The smaller the individual particle, the less the magnetic force
acting on it. The force is proportional to the integral over the particle's
volume taken over its magnetization times the gradient of the magnetic field.
(You may want to check http://en.wikipedia.org/wiki/Magnetic_force_microscope).
The gradient is usually small, although the total field is around 1-2 Tesla for
a 300 kV microscope, as is the volume of the specimen. Thus the total force is
small. Care should be taken for extremely high-magnetic moment particles above
a certain size. I also recommend to switch off the lenses (objective is most
important) during specimen insertion, as the stray fields at the vacuum
transfer port may be rather large.

Good luck - Joe


Prof. Dr. Josef Zweck - Elektronenmikroskopie
Fakultät für Physik der Universität Regensburg
D - 93040 Regensburg
Fon: ++49 (0)941 943 2590
Fax: ++49 (0)941 943 4544
http://www-elektronenmikroskopie.uni-regensburg.de/
*** next upcoming EM conference: http://www.mc2011.de/ in Kiel/Germany from
Aug. 28 - Sept. 2
*** Deutsche Ges. f. Elektronenmikroskopie: www.dge-homepage.de
*** see also the European Microscopy Society's homepage
*** http://www.eurmicsoc.org/




} } } {raristau-at-ims.uconn.edu} schrieb am 26.4.2011 um 16.51 Uhr in Nachricht
{201104261451.p3QEp3YQ024669-at-ns.microscopy.com} :

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} Dear Listers
}
} I have a request for imaging magnetic nanoparticles in TEM. The particles
} are currently in dry powder form. They are easily attracted to a small
} permanent magnet. My initial reaction is to refuse the request for fear of
} coating the objective lens with magnetic particles.
}
} However, perhaps someone has successfully imaged such and can advise a safe
} method for introducing them into the TEM.
}
} Cheers
} Roger
}
} Roger A. Ristau, PhD
} Electron Microscopy Specialist
} Institute of Materials Science
} 97 North Eagleville Road
} University of Connecticut
} Storrs, CT 06269
} vox: 860-486-5453
} fax: 860-486-4745
}
}
}
}
} ==============================Original
Headers==============================
} 7, 21 -- From raristau-at-ims.uconn.edu Tue Apr 26 09:41:11 2011
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} [137.99.25.234])
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} 7, 21 -- Subject: TEM of magnetic particles
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11, 25 -- From Josef.Zweck-at-physik.uni-regensburg.de Tue Apr 26 10:16:23 2011
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From: protrain-at-emcourses.com
Date: Tue, 26 Apr 2011 10:23:33 -0500
Subject: [Microscopy] TEM of magnetic particles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Roger,

Should you find a way of mounting the particles in safety may I help on the
observation side?

With any magnetic material it is useful to reduce the level of the magnetic
field in the objective lens. This is easily done using the eucentric stage
to raise the specimen within the pole piece. With a "normal" specimen
adjust the eucentric system so that as you change the Z prime you need to
turn the objective lens anti clockwise. There are a few millimetres
available to you and this will have quite an effect upon the lens field.

Remember your magnifications will be lower and your contrast will be higher.
The magnification change due to the weaker lens and the contrast due to
increasing the specimen to aperture distance and increasing aberrations.

Whilst I rarely carry out this action in this direction but often obtain
more than the manufacturer claims in resolution by working the Z prime to
lower the specimen within the lens, increasing the lens field and reducing
its aberrations.

Good luck

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: raristau-at-ims.uconn.edu [mailto:raristau-at-ims.uconn.edu]
Sent: 26 April 2011 15:42
To: protrain-at-emcourses.com

Dear Listers

I have a request for imaging magnetic nanoparticles in TEM. The particles
are currently in dry powder form. They are easily attracted to a small
permanent magnet. My initial reaction is to refuse the request for fear of
coating the objective lens with magnetic particles.

However, perhaps someone has successfully imaged such and can advise a safe
method for introducing them into the TEM.

Cheers
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




==============================Original Headers==============================
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From: donovan-at-uoregon.edu
Date: Tue, 26 Apr 2011 10:40:50 -0500
Subject: [Microscopy] problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

All,
I didn't chime in on the original question, but I would like to add
my "2 cents" as they say on the general issue of compressed gases.

When we designed our new microscopy facility we found a large number
of instruments using a large number of compressed air cylinders for
valve control and N2 cylinders for vent gas. We then did a cost
analysis and found that we could replace all this cylinder usage by a
cheaper and easier means.

For the compressed air cylinders we designed an air drying system
which utilized already clean and compressed dry air from the
chemistry building to which we added two large capacity moisture
dryers in parallel (so one could be changed while using the other)
which happens about every three years or so and also a final
activated carbon filter to remove hydrocarbons and a particle filter
which gives us extremely dry, HC free compressed air at 110 psi. This
compressed air is supplied to each instrument's gallery section to
control instrument valves and the air moisture is monitored and
connected to an alarm system.

For N2 use this dry clean air is supplied to a analytical grade N2
generation system (from Perkin Elmer) designed for ICP-MS systems so
the purity is 99.996% or better with an N2 generation rate of 12
liters per minutes. The unit cost around $15K and uses a membrane
filter that costs about $100 every 3 years to replace. This N2 gas is
also supplied to each instrument's gallery section for use in venting.

With these two systems we can supply around 16 different analytical
instruments and never buy/rent/haul or connect an air or N2
compressed gas cylinder again. I highly recommend this type of system
for both low cost and ease of use. I have to admit- I never liked
hauling those cylinders around very much.

The only compressed gases we still buy are a few P-10 and Ar
cylinders which are used at very low rates and changed every 6 months
to one year or so. The only caveat I would add is that if you hire
contractors to plumb such a system in your lab you should specify
"medical grade" plumbing which means they don't use any fluxes which
could contaminate the system. One can also use Silphos solder while
flowing N2 gas through the copper (used in refrigeration systems)
which is also a fluxless method to prevent flux or scale formation
inside the tubing.
john



At 01:13 AM 4/26/2011, you wrote:



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From: John.Mardinly-at-asu.edu
Date: Tue, 26 Apr 2011 11:59:22 -0500
Subject: [Microscopy] TEM of magnetic particles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

When I was at Western Digital, the SEMs would periodically need to have
the final pole piece cleaned of magnetic particles, and these samples
were solid sputtered films with obvious no loose particles and sub 10nm
grain size, not powders. Be very careful with loose particles.

A. John Mardinly,
ASU

-----Original Message-----
X-from: raristau-at-ims.uconn.edu [mailto:raristau-at-ims.uconn.edu]
Sent: Tuesday, April 26, 2011 7:51 AM
To: John Mardinly

Dear Listers

I have a request for imaging magnetic nanoparticles in TEM. The
particles
are currently in dry powder form. They are easily attracted to a small
permanent magnet. My initial reaction is to refuse the request for fear
of
coating the objective lens with magnetic particles.

However, perhaps someone has successfully imaged such and can advise a
safe
method for introducing them into the TEM.

Cheers
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




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From: John.Mardinly-at-asu.edu
Date: Tue, 26 Apr 2011 12:04:33 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I had an IDE air system on a 2010F fill up with water once when we went too long without purging the compressor. The replacement system had an automatic purge and an air dryer in series. Be advised that using nitrogen cylinders for valves is ill advised: valve actuators tend to develop leaks over time, and a catastrophic leak could not only deplete your cylinder rapidly, it could fill the room with asphyxiant, which is an unexpected but lethal consequence. There were multiple fatalities from nitrogen use when I was at Intel.

A. John Mardinly,
ASU


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, April 26, 2011 1:20 AM
To: John Mardinly

Thanks to all who offered their advices. I have unplugged all the lines and they
all contained water, but I am quite sure that the water was lying in the bottom
because the system was off so there was no air movement. We'll probably replace
the lines because we are almost sure that the water contained some oil. It is
still a mystery why this happened but I don't want to care about it anymore. In
the future we'll connect an N2 bottle in place of compressed air for the valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct words
here, to better reflect my thoughts).

Regards,

Stephane


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From: John.Mardinly-at-asu.edu
Date: Tue, 26 Apr 2011 12:24:54 -0500
Subject: [Microscopy] problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

My old advisor at Michigan, Wil Bigelow, had a unique and cost effective
method of capturing ultra high purity nitrogen gas for venting
microscopes. There was an added bonus in that no regulator was required,
and it could never overpressurize the chamber and damage ultrathin
detector windows. The cost? Under $20! How? He would put a rubber
stopper in the EDX dewar with a tube in it for attaching a surgical
rubber hose that ran to an extra large beach ball. That hose was teed to
another hose that ran to the microscope vent inlet. A small slit in the
surgical rubber hose provided over-pressure protection. Boil-off from
the EDX dewar would fill the beach ball, and that nitrogen would be used
to vent the microscope. The only disadvantage, is that some EDX systems
have an alarm for sensing low LN2 levels that goes through the fill
opening, and that would be difficult to accommodate. I might add that it
made the lab look a LOT more cheery and colorful, which was a nice thing
to have during the dreary Michigan winters.

A. John Mardinly,
ASU


-----Original Message-----
X-from: donovan-at-uoregon.edu [mailto:donovan-at-uoregon.edu]
Sent: Tuesday, April 26, 2011 8:48 AM
To: John Mardinly

All,
I didn't chime in on the original question, but I would like to add
my "2 cents" as they say on the general issue of compressed gases.

When we designed our new microscopy facility we found a large number
of instruments using a large number of compressed air cylinders for
valve control and N2 cylinders for vent gas. We then did a cost
analysis and found that we could replace all this cylinder usage by a
cheaper and easier means.

For the compressed air cylinders we designed an air drying system
which utilized already clean and compressed dry air from the
chemistry building to which we added two large capacity moisture
dryers in parallel (so one could be changed while using the other)
which happens about every three years or so and also a final
activated carbon filter to remove hydrocarbons and a particle filter
which gives us extremely dry, HC free compressed air at 110 psi. This
compressed air is supplied to each instrument's gallery section to
control instrument valves and the air moisture is monitored and
connected to an alarm system.

For N2 use this dry clean air is supplied to a analytical grade N2
generation system (from Perkin Elmer) designed for ICP-MS systems so
the purity is 99.996% or better with an N2 generation rate of 12
liters per minutes. The unit cost around $15K and uses a membrane
filter that costs about $100 every 3 years to replace. This N2 gas is
also supplied to each instrument's gallery section for use in venting.

With these two systems we can supply around 16 different analytical
instruments and never buy/rent/haul or connect an air or N2
compressed gas cylinder again. I highly recommend this type of system
for both low cost and ease of use. I have to admit- I never liked
hauling those cylinders around very much.

The only compressed gases we still buy are a few P-10 and Ar
cylinders which are used at very low rates and changed every 6 months
to one year or so. The only caveat I would add is that if you hire
contractors to plumb such a system in your lab you should specify
"medical grade" plumbing which means they don't use any fluxes which
could contaminate the system. One can also use Silphos solder while
flowing N2 gas through the copper (used in refrigeration systems)
which is also a fluxless method to prevent flux or scale formation
inside the tubing.
john



At 01:13 AM 4/26/2011, you wrote:



} -----------------------------------------------------------------------
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From: PhillipsT-at-missouri.edu
Date: Tue, 26 Apr 2011 13:10:12 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I have always been cautious with my liquid N2 for the reasons John raises below but have never thought about compressed N2 tanks. In my microtome room, I run 3 N2 tanks to blow off debris from my ultramicrotome knives. It is a lot cheaper and environmentally nicer than using those old compressed Freon cans of gas. Am I really running a serious risk here? It is a relatively big room with an open door into the main lab. Comments? Tom




Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Tuesday, April 26, 2011 12:05 PM
To: Phillips, Thomas E.

I had an IDE air system on a 2010F fill up with water once when we went too long without purging the compressor. The replacement system had an automatic purge and an air dryer in series. Be advised that using nitrogen cylinders for valves is ill advised: valve actuators tend to develop leaks over time, and a catastrophic leak could not only deplete your cylinder rapidly, it could fill the room with asphyxiant, which is an unexpected but lethal consequence. There were multiple fatalities from nitrogen use when I was at Intel.

A. John Mardinly,
ASU


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, April 26, 2011 1:20 AM
To: John Mardinly

Thanks to all who offered their advices. I have unplugged all the lines and they
all contained water, but I am quite sure that the water was lying in the bottom
because the system was off so there was no air movement. We'll probably replace
the lines because we are almost sure that the water contained some oil. It is
still a mystery why this happened but I don't want to care about it anymore. In
the future we'll connect an N2 bottle in place of compressed air for the valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct words
here, to better reflect my thoughts).

Regards,

Stephane


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From: kenconverse-at-qualityimages.biz
Date: Tue, 26 Apr 2011 13:41:59 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Each tank is typically 220 cubic feet and with a large room and open door, I
wouldn't think that there is too big a risk. What I use in my shop is an
oil-based compressor that gets filtered through a coalescing filter that I
think is rated at .05 microns for oil mist. The filter has an indicator
that goes from green to red if the efficiency drops too much. It's still
green and has been in use for about 25 years and I've had no problems with
contamination. I only use the Freon for leak detecting with a Varian Smart
Gauge so I don't use much.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Tuesday, April 26, 2011 2:13 PM
To: kenconverse-at-qualityimages.biz

I have always been cautious with my liquid N2 for the reasons John raises
below but have never thought about compressed N2 tanks. In my microtome
room, I run 3 N2 tanks to blow off debris from my ultramicrotome knives. It
is a lot cheaper and environmentally nicer than using those old compressed
Freon cans of gas. Am I really running a serious risk here? It is a
relatively big room with an open door into the main lab. Comments? Tom




Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Tuesday, April 26, 2011 12:05 PM
To: Phillips, Thomas E.

I had an IDE air system on a 2010F fill up with water once when we went too
long without purging the compressor. The replacement system had an automatic
purge and an air dryer in series. Be advised that using nitrogen cylinders
for valves is ill advised: valve actuators tend to develop leaks over time,
and a catastrophic leak could not only deplete your cylinder rapidly, it
could fill the room with asphyxiant, which is an unexpected but lethal
consequence. There were multiple fatalities from nitrogen use when I was at
Intel.

A. John Mardinly,
ASU


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, April 26, 2011 1:20 AM
To: John Mardinly

Thanks to all who offered their advices. I have unplugged all the lines and
they
all contained water, but I am quite sure that the water was lying in the
bottom
because the system was off so there was no air movement. We'll probably
replace
the lines because we are almost sure that the water contained some oil. It
is
still a mystery why this happened but I don't want to care about it anymore.
In
the future we'll connect an N2 bottle in place of compressed air for the
valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct
words
here, to better reflect my thoughts).

Regards,

Stephane


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37, 28 -- From kenconverse-at-qualityimages.biz Tue Apr 26 13:41:58 2011
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From: John.Mardinly-at-asu.edu
Date: Tue, 26 Apr 2011 15:50:36 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ken;
An "A" cylinder is 1.76 cubic feet internally, which at 3,000 psi is 200 atmospheres which should be more like 352 cubic feet of nitrogen gas.

A. John Mardinly,
ASU



-----Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
Sent: Tuesday, April 26, 2011 11:49 AM
To: John Mardinly

Each tank is typically 220 cubic feet and with a large room and open door, I
wouldn't think that there is too big a risk. What I use in my shop is an
oil-based compressor that gets filtered through a coalescing filter that I
think is rated at .05 microns for oil mist. The filter has an indicator
that goes from green to red if the efficiency drops too much. It's still
green and has been in use for about 25 years and I've had no problems with
contamination. I only use the Freon for leak detecting with a Varian Smart
Gauge so I don't use much.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Tuesday, April 26, 2011 2:13 PM
To: kenconverse-at-qualityimages.biz

I have always been cautious with my liquid N2 for the reasons John raises
below but have never thought about compressed N2 tanks. In my microtome
room, I run 3 N2 tanks to blow off debris from my ultramicrotome knives. It
is a lot cheaper and environmentally nicer than using those old compressed
Freon cans of gas. Am I really running a serious risk here? It is a
relatively big room with an open door into the main lab. Comments? Tom




Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Tuesday, April 26, 2011 12:05 PM
To: Phillips, Thomas E.

I had an IDE air system on a 2010F fill up with water once when we went too
long without purging the compressor. The replacement system had an automatic
purge and an air dryer in series. Be advised that using nitrogen cylinders
for valves is ill advised: valve actuators tend to develop leaks over time,
and a catastrophic leak could not only deplete your cylinder rapidly, it
could fill the room with asphyxiant, which is an unexpected but lethal
consequence. There were multiple fatalities from nitrogen use when I was at
Intel.

A. John Mardinly,
ASU


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, April 26, 2011 1:20 AM
To: John Mardinly

Thanks to all who offered their advices. I have unplugged all the lines and
they
all contained water, but I am quite sure that the water was lying in the
bottom
because the system was off so there was no air movement. We'll probably
replace
the lines because we are almost sure that the water contained some oil. It
is
still a mystery why this happened but I don't want to care about it anymore.
In
the future we'll connect an N2 bottle in place of compressed air for the
valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct
words
here, to better reflect my thoughts).

Regards,

Stephane


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From: kenconverse-at-qualityimages.biz
Date: Tue, 26 Apr 2011 17:18:51 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi John,
In another life I often heard them referred to as 220 cubic foot cylinders.
I've never seen one with more than 2600psi, but that does come out to 305
cubic feet which is a good deal more than 220. I stand corrected.
Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Tuesday, April 26, 2011 4:53 PM
To: kenconverse-at-qualityimages.biz

Ken;
An "A" cylinder is 1.76 cubic feet internally, which at 3,000 psi is
200 atmospheres which should be more like 352 cubic feet of nitrogen gas.

A. John Mardinly,
ASU



-----Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]

Sent: Tuesday, April 26, 2011 11:49 AM
To: John Mardinly

Each tank is typically 220 cubic feet and with a large room and open door, I
wouldn't think that there is too big a risk. What I use in my shop is an
oil-based compressor that gets filtered through a coalescing filter that I
think is rated at .05 microns for oil mist. The filter has an indicator
that goes from green to red if the efficiency drops too much. It's still
green and has been in use for about 25 years and I've had no problems with
contamination. I only use the Freon for leak detecting with a Varian Smart
Gauge so I don't use much.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Tuesday, April 26, 2011 2:13 PM
To: kenconverse-at-qualityimages.biz

I have always been cautious with my liquid N2 for the reasons John raises
below but have never thought about compressed N2 tanks. In my microtome
room, I run 3 N2 tanks to blow off debris from my ultramicrotome knives. It
is a lot cheaper and environmentally nicer than using those old compressed
Freon cans of gas. Am I really running a serious risk here? It is a
relatively big room with an open door into the main lab. Comments? Tom




Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Tuesday, April 26, 2011 12:05 PM
To: Phillips, Thomas E.

I had an IDE air system on a 2010F fill up with water once when we went too
long without purging the compressor. The replacement system had an automatic
purge and an air dryer in series. Be advised that using nitrogen cylinders
for valves is ill advised: valve actuators tend to develop leaks over time,
and a catastrophic leak could not only deplete your cylinder rapidly, it
could fill the room with asphyxiant, which is an unexpected but lethal
consequence. There were multiple fatalities from nitrogen use when I was at
Intel.

A. John Mardinly,
ASU


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, April 26, 2011 1:20 AM
To: John Mardinly

Thanks to all who offered their advices. I have unplugged all the lines and
they
all contained water, but I am quite sure that the water was lying in the
bottom
because the system was off so there was no air movement. We'll probably
replace
the lines because we are almost sure that the water contained some oil. It
is
still a mystery why this happened but I don't want to care about it anymore.
In
the future we'll connect an N2 bottle in place of compressed air for the
valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct
words
here, to better reflect my thoughts).

Regards,

Stephane


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From: John.Mardinly-at-asu.edu
Date: Tue, 26 Apr 2011 17:32:44 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

In any case, a single bottle is not nearly the hazard that plumbed in nitrogen is.

A. John Mardinly,
ASU

-----Original Message-----
X-from: Ken Converse [mailto:kenconverse-at-qualityimages.biz]
Sent: Tuesday, April 26, 2011 3:19 PM
To: John Mardinly; MSA Listserver

Ken;
An "A" cylinder is 1.76 cubic feet internally, which at 3,000 psi is
200 atmospheres which should be more like 352 cubic feet of nitrogen gas.

A. John Mardinly,
ASU



-----Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]

Sent: Tuesday, April 26, 2011 11:49 AM
To: John Mardinly

Each tank is typically 220 cubic feet and with a large room and open door, I
wouldn't think that there is too big a risk. What I use in my shop is an
oil-based compressor that gets filtered through a coalescing filter that I
think is rated at .05 microns for oil mist. The filter has an indicator
that goes from green to red if the efficiency drops too much. It's still
green and has been in use for about 25 years and I've had no problems with
contamination. I only use the Freon for leak detecting with a Varian Smart
Gauge so I don't use much.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Tuesday, April 26, 2011 2:13 PM
To: kenconverse-at-qualityimages.biz

I have always been cautious with my liquid N2 for the reasons John raises
below but have never thought about compressed N2 tanks. In my microtome
room, I run 3 N2 tanks to blow off debris from my ultramicrotome knives. It
is a lot cheaper and environmentally nicer than using those old compressed
Freon cans of gas. Am I really running a serious risk here? It is a
relatively big room with an open door into the main lab. Comments? Tom




Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Tuesday, April 26, 2011 12:05 PM
To: Phillips, Thomas E.

I had an IDE air system on a 2010F fill up with water once when we went too
long without purging the compressor. The replacement system had an automatic
purge and an air dryer in series. Be advised that using nitrogen cylinders
for valves is ill advised: valve actuators tend to develop leaks over time,
and a catastrophic leak could not only deplete your cylinder rapidly, it
could fill the room with asphyxiant, which is an unexpected but lethal
consequence. There were multiple fatalities from nitrogen use when I was at
Intel.

A. John Mardinly,
ASU


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, April 26, 2011 1:20 AM
To: John Mardinly

Thanks to all who offered their advices. I have unplugged all the lines and
they
all contained water, but I am quite sure that the water was lying in the
bottom
because the system was off so there was no air movement. We'll probably
replace
the lines because we are almost sure that the water contained some oil. It
is
still a mystery why this happened but I don't want to care about it anymore.
In
the future we'll connect an N2 bottle in place of compressed air for the
valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct
words
here, to better reflect my thoughts).

Regards,

Stephane


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From: Colin.Veitch-at-csiro.au
Date: Tue, 26 Apr 2011 17:58:37 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

G'day,

Just a word of caution about using gases in cylinders. We used to use 99.999% nitrogen on our microscopes but discovered water and other contaminants in the gas lines. We asked the gas supplier and they checked a number of the "high purity" cylinders of different gases only to discover water, rust and other "crud" in them.

We now use the nitrogen gas blow off from a 3000 litre liquid nitrogen vessel with multiple fail-safes in the line and multiple oxygen level monitors (and safety lock-outs) in all the labs that utilise this source. We have a single cylinder as a back up if the main vessel has to be disconnected.

Cheers

Colin Veitch


Electron Microscopist
CSIRO Materials Science and Engineering, Geelong Laboratory
PO Box 21, BELMONT, Vic. 3216. Australia.

colin.veitch-at-csiro.au
http://www.tft.csiro.au

Tel: +61 (0) 3 5246 4000
Mobile: 0438 538 475
Fax: +61 (0) 3 5246 4811

The information contained in this e-mail message may be privileged or confidential information. If you are not an intended recipient, you may not copy, distribute or take any action in reliance on it. If you have received this message in error, please telephone CSIRO Materials Science and Engineering on +61 3 5246 4000.

-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Wednesday, 27 April 2011 08:33
To: Veitch, Colin (CMSE, Geelong Belmont)

In any case, a single bottle is not nearly the hazard that plumbed in nitrogen is.

A. John Mardinly,
ASU

-----Original Message-----
X-from: Ken Converse [mailto:kenconverse-at-qualityimages.biz]
Sent: Tuesday, April 26, 2011 3:19 PM
To: John Mardinly; MSA Listserver

Ken;
An "A" cylinder is 1.76 cubic feet internally, which at 3,000 psi is
200 atmospheres which should be more like 352 cubic feet of nitrogen gas.

A. John Mardinly,
ASU



-----Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]

Sent: Tuesday, April 26, 2011 11:49 AM
To: John Mardinly

Each tank is typically 220 cubic feet and with a large room and open door, I
wouldn't think that there is too big a risk. What I use in my shop is an
oil-based compressor that gets filtered through a coalescing filter that I
think is rated at .05 microns for oil mist. The filter has an indicator
that goes from green to red if the efficiency drops too much. It's still
green and has been in use for about 25 years and I've had no problems with
contamination. I only use the Freon for leak detecting with a Varian Smart
Gauge so I don't use much.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Tuesday, April 26, 2011 2:13 PM
To: kenconverse-at-qualityimages.biz

I have always been cautious with my liquid N2 for the reasons John raises
below but have never thought about compressed N2 tanks. In my microtome
room, I run 3 N2 tanks to blow off debris from my ultramicrotome knives. It
is a lot cheaper and environmentally nicer than using those old compressed
Freon cans of gas. Am I really running a serious risk here? It is a
relatively big room with an open door into the main lab. Comments? Tom




Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Tuesday, April 26, 2011 12:05 PM
To: Phillips, Thomas E.

I had an IDE air system on a 2010F fill up with water once when we went too
long without purging the compressor. The replacement system had an automatic
purge and an air dryer in series. Be advised that using nitrogen cylinders
for valves is ill advised: valve actuators tend to develop leaks over time,
and a catastrophic leak could not only deplete your cylinder rapidly, it
could fill the room with asphyxiant, which is an unexpected but lethal
consequence. There were multiple fatalities from nitrogen use when I was at
Intel.

A. John Mardinly,
ASU


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, April 26, 2011 1:20 AM
To: John Mardinly

Thanks to all who offered their advices. I have unplugged all the lines and
they
all contained water, but I am quite sure that the water was lying in the
bottom
because the system was off so there was no air movement. We'll probably
replace
the lines because we are almost sure that the water contained some oil. It
is
still a mystery why this happened but I don't want to care about it anymore.
In
the future we'll connect an N2 bottle in place of compressed air for the
valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct
words
here, to better reflect my thoughts).

Regards,

Stephane


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85, 38 -- From prvs=090db5830=Colin.Veitch-at-csiro.au Tue Apr 26 17:58:35 2011
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From: John.Mardinly-at-asu.edu
Date: Tue, 26 Apr 2011 19:06:06 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I just learned a few things in a compressed gas course I took recently, and that is that tanks should not ever be fully emptied because then they need to be purged and cleaned before being refilled so that they do not get contaminants in them. Trouble is 99% of gas users do not know this, and run tanks until nothing comes out. Then since they did not notify the gas vendor, they did not clean or purge the cylinder. Another thing is that the instructor said tanks are supposed to immersed in water to cool them while being refilled. Perhaps that is one way they can pick up water.

John Mardinly
ASU

On Apr 26, 2011, at 4:09 PM, "Colin.Veitch-at-csiro.au" {Colin.Veitch-at-csiro.au} wrote:

}
}
}
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} G'day,
}
} Just a word of caution about using gases in cylinders. We used to use 99.999% nitrogen on our microscopes but discovered water and other contaminants in the gas lines. We asked the gas supplier and they checked a number of the "high purity" cylinders of different gases only to discover water, rust and other "crud" in them.
}
} We now use the nitrogen gas blow off from a 3000 litre liquid nitrogen vessel with multiple fail-safes in the line and multiple oxygen level monitors (and safety lock-outs) in all the labs that utilise this source. We have a single cylinder as a back up if the main vessel has to be disconnected.
}
} Cheers
}
} Colin Veitch
}
}
} Electron Microscopist
} CSIRO Materials Science and Engineering, Geelong Laboratory
} PO Box 21, BELMONT, Vic. 3216. Australia.
}
} colin.veitch-at-csiro.au
} http://www.tft.csiro.au
}
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} The information contained in this e-mail message may be privileged or confidential information. If you are not an intended recipient, you may not copy, distribute or take any action in reliance on it. If you have received this message in error, please telephone CSIRO Materials Science and Engineering on +61 3 5246 4000.
}
} -----Original Message-----
} X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
} Sent: Wednesday, 27 April 2011 08:33
} To: Veitch, Colin (CMSE, Geelong Belmont)
} Subject: [Microscopy] problem with compressed air-thanks!
}
}
}
}
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} In any case, a single bottle is not nearly the hazard that plumbed in nitrogen is.
}
} A. John Mardinly,
} ASU
}
} -----Original Message-----
} X-from: Ken Converse [mailto:kenconverse-at-qualityimages.biz]
} Sent: Tuesday, April 26, 2011 3:19 PM
} To: John Mardinly; MSA Listserver
} Subject: RE: [Microscopy] RE: problem with compressed air-thanks!
}
} Hi John,
} In another life I often heard them referred to as 220 cubic foot cylinders.
} I've never seen one with more than 2600psi, but that does come out to 305
} cubic feet which is a good deal more than 220. I stand corrected.
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
} Sent: Tuesday, April 26, 2011 4:53 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] RE: problem with compressed air-thanks!
}
}
}
}
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} Ken;
} An "A" cylinder is 1.76 cubic feet internally, which at 3,000 psi is
} 200 atmospheres which should be more like 352 cubic feet of nitrogen gas.
}
} A. John Mardinly,
} ASU
}
}
}
} -----Original Message-----
} X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
}
} Sent: Tuesday, April 26, 2011 11:49 AM
} To: John Mardinly
} Subject: [Microscopy] problem with compressed air-thanks!
}
}
}
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}
} Each tank is typically 220 cubic feet and with a large room and open door, I
} wouldn't think that there is too big a risk. What I use in my shop is an
} oil-based compressor that gets filtered through a coalescing filter that I
} think is rated at .05 microns for oil mist. The filter has an indicator
} that goes from green to red if the efficiency drops too much. It's still
} green and has been in use for about 25 years and I've had no problems with
} contamination. I only use the Freon for leak detecting with a Varian Smart
} Gauge so I don't use much.
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
} Sent: Tuesday, April 26, 2011 2:13 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] RE: problem with compressed air-thanks!
}
}
}
}
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}
} I have always been cautious with my liquid N2 for the reasons John raises
} below but have never thought about compressed N2 tanks. In my microtome
} room, I run 3 N2 tanks to blow off debris from my ultramicrotome knives. It
} is a lot cheaper and environmentally nicer than using those old compressed
} Freon cans of gas. Am I really running a serious risk here? It is a
} relatively big room with an open door into the main lab. Comments? Tom
}
}
}
}
} Thomas E. Phillips, Ph.D
} Professor of Biological Sciences
} Director, Molecular Cytology Core
} 2 Tucker Hall
} University of Missouri
} Columbia, MO 65211-7400
} 573-882-4712 (office)
} 573-882-0123 (fax)
} phillipst-at-missouri.edu
}
} http://www.biology.missouri.edu/faculty/phillips.html
} http://www.biotech.missouri.edu/mcc/
}
}
} -----Original Message-----
} X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
} Sent: Tuesday, April 26, 2011 12:05 PM
} To: Phillips, Thomas E.
} Subject: [Microscopy] problem with compressed air-thanks!
}
}
}
}
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} I had an IDE air system on a 2010F fill up with water once when we went too
} long without purging the compressor. The replacement system had an automatic
} purge and an air dryer in series. Be advised that using nitrogen cylinders
} for valves is ill advised: valve actuators tend to develop leaks over time,
} and a catastrophic leak could not only deplete your cylinder rapidly, it
} could fill the room with asphyxiant, which is an unexpected but lethal
} consequence. There were multiple fatalities from nitrogen use when I was at
} Intel.
}
} A. John Mardinly,
} ASU
}
}
} -----Original Message-----
} X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
} Sent: Tuesday, April 26, 2011 1:20 AM
} To: John Mardinly
} Subject: [Microscopy] Re: problem with compressed air-thanks!
}
}
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} Thanks to all who offered their advices. I have unplugged all the lines and
} they
} all contained water, but I am quite sure that the water was lying in the
} bottom
} because the system was off so there was no air movement. We'll probably
} replace
} the lines because we are almost sure that the water contained some oil. It
} is
} still a mystery why this happened but I don't want to care about it anymore.
} In
} the future we'll connect an N2 bottle in place of compressed air for the
} valves.
} No way that I worry again to waste 600 000 euros worth of material for some
} stupid moisture (you may replace "stupid" by other not-politically-correct
} words
} here, to better reflect my thoughts).
}
} Regards,
}
} Stephane
}
}
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} 47, 40 -- From John.Mardinly-at-asu.edu Tue Apr 26 15:50:35 2011
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From: donovan-at-uoregon.edu
Date: Tue, 26 Apr 2011 19:29:38 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

John makes an good point about plumbed in N2 (or should we be saying
"coppered in" nowadays?).

I think this is a real hazard, which is why all our N2 lines
terminate in a separately ventilated equipment gallery that surrounds
our lab complex, not to mention that we have O2 monitors as well. All
the fume hoods and room ventilation are also on emergency power in
addition to the instruments.

Another point worth raising is that each instrument has different
requirements for psi delivery so at each instrument station in the
equipment gallery we provide a two stage regulator to take it from
110 psi to a more moderate pressure, say 10 to 60 psi and then for
those instruments that require further stepping down, an additional
precision low pressure regulator for regulating from zero to 2 or 3 psi.
john

At 03:36 PM 4/26/2011, you wrote:

} In any case, a single bottle is not nearly the hazard that plumbed
} in nitrogen is.
}
} A. John Mardinly,
} ASU
}
} -----Original Message-----
} X-from: Ken Converse [mailto:kenconverse-at-qualityimages.biz]
} Sent: Tuesday, April 26, 2011 3:19 PM
} To: John Mardinly; MSA Listserver
} Subject: RE: [Microscopy] RE: problem with compressed air-thanks!
}
} Hi John,
} In another life I often heard them referred to as 220 cubic foot cylinders.
} I've never seen one with more than 2600psi, but that does come out to 305
} cubic feet which is a good deal more than 220. I stand corrected.
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
} Sent: Tuesday, April 26, 2011 4:53 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] RE: problem with compressed air-thanks!
}
}
}
}
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From: rosemary.white-at-csiro.au
Date: Tue, 26 Apr 2011 21:55:35 -0500
Subject: [Microscopy] Re: Osmium, freeze substitution, and immonogenicity

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Ann,

For general advice on preserving lipids for TEM, the expert is Lacey Samuels
at UBC, Vancouver. She's also done quite a bit of immuno-EM.

Or your colleague could look up:

Mamun EA, Cantrill LC, Overall RL, Sutton BG 2005 Cellular organisation in
meiotic and early post-meiotic rice anthers. Cell Biology International 29:
903-913

or here's an unpublished protocol from a thesis - really spectacular images
of pollen at various stages of development in rice anthers:

The cryofixation protocol for immunolabelling was modified from
Paxson-Sowders et al. (2001). Anthers at the required stages were cut and
placed in specimen holders pre-coated with 7.5% (w/v) lecithin in chloroform
and filled with 0.2M sucrose. Then samples were frozen in a Leica EM PACT
Freezer (Leica, Germany). Following freezing, samples were
freeze-substituted in 3% paraformaldehyde and 0.5% uranyl acetate in
anhydrous acetone at -90ºC for 60 hours, -60ºC for 12 hours, -30ºC for 6
hours and then brought up to 20ºC with a temperature increase rate of +5ºC
per hour in a Leica EM AFS (automatic freeze substitution) machine (Leica,
Germany). Following this the anthers were rinsed 3 times in anhydrous
acetone and infiltrated in a graded acetone/LR gold acrylic resin mixture
and 100% LR gold resin for 5 days with two changes of fresh resin per day
and polymerised under UV at -20ºC in the Leica EM AFS for 24 hours.

Immunolabelling techniques were modified from methods for indirect
immunogold labelling of ultra-thin sections for TEM (Cole, 1996) and
immunofluorescence labelling (Harper et al., 1996). One micrometer sections
of LR-Gold embedded blocks were placed on poly-L-lysine coated slides and
were blocked with 200 μl per sample of blocking buffer containing phosphate
buffered saline (PBS) (0.8% NaCl, 0.02% KCl, 0.115% Na2HPO4, KH2PO4 and
0.02% NaN3, pH6.9) and 1% BSA at room temperature for 1 hour. Then the
sections were incubated in a 1:100 solution of primary antibodies for
callose and callose synthase in blocking buffer at 4ºC overnight at a rate
of 20μl per sample. Sections were washed 3 times with PBS for 5 minutes
each, followed by incubation of secondary antibody (1:50 dilution with the
same blocking buffer) at 37 ºC for 3 hours. Sections were washed again 3
times with PBS for 5 minutes each, followed by background staining with
propidium iodide (10μg/ml) in PBS for 10 minutes. Sections were washed twice
with deionized water for 5 minutes each and then mounted in anti-fade
solution, Citifluor (Citifluor, London, UK). Slides were covered and sealed
with nail polish, and then allowed to air-dry for 10 minutes.
Immunogold-labelling techniques at the electron microscopy level were
modified based on indirect immunogold labelling of ultra-thin sections for
TEM (Cole, 1996). Ultra-thin sections from LR gold blocks were placed on
pioloform film coated nickel grids (100 hexagonal mesh) and were blocked in
30 μl/grid of blocking buffer containing phosphate buffered saline plus
Tween 20 (PBST) (0.8 % NaCl, 0.02% KCl, 0.115% Na2HPO4, KH2PO4, 0.02% NaN3
and 0.5% Tween 20, pH6.9) and 1% BSA at room temperature for 1 hour. Then
the sections were incubated in 20μl/grid of 1:100 primary antibodies for
callose and callose synthase and 1:400 for β-1,3-glucanase in the blocking
buffer at room temperature for 2 hours. Sections were washed with PBST 3
times for 5 minutes each, followed by incubation with secondary antibody
(1:30 dilution with the blocking buffer) at room temperature for 1 hour.
Sections were washed again 3 times with PBST and then with distilled water
twice all for 5 minutes each, followed by background staining with saturated
uranyl acetate (in 50% ethanol) and Reynold’s lead citrate for 10 minutes
each. The sections were rinsed twice with distilled water for 1 minute after
staining.

cheers,
Rosemary White

On 19/04/11 4:31 AM, "Ann-Fook.Yang-at-AGR.GC.CA" {Ann-Fook.Yang-at-AGR.GC.CA}
wrote:

}
}
}
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} I am posting the following for a colleague who has difficulty with his
} computer. Please reply to microscopy so that everyone can read it, including
} him.
}
} Ann Fook
}
} Ann-Fook Yang,
} EM Unit | Unite EM
} Food Safety and Quality | Salubrité et qualité des aliments
} Agriculture and Agri-Food Canada | Agriculture et Agroalimentaire Canada
} Edifice K.W. Neatby Building,
} 960 Carling Av | 960 Boulevard Carling,
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} ============================================================================
}
}
} Hello all,
}
}
}
} New subscriber, first-time poster.
}
}
}
} We are using high-pressure freezing along with freeze substitution to try
} preserving the structure of Arabidopsis pollen. One of the challenges is
} preserving the pollen kitt (tryphine) on the surface of the pollen which
} mostly comprises of lipids and sterol-esters. We have attempted to use just
} paraformaldehyde (2%) and glutaraldehyde (0.2%) in the freeze substitution
} fixative in the hopes that the proteinaceous components of the pollen kitt
} would be sufficiently fixed to retain its structure after embedding but this
} has clearly shown to not be the case.
}
}
}
} Our final option would be to try varying concentrations of osmium (which is
} known to fix lipid components) but we are very concerned about loss of
} immunogenicity (which we will require from the protocol).
}
}
}
} Does anyone have any experience with the use of osmium in low temperature
} freeze substitution protocols where immunogenicity is adequately preserved?
} We would like some feedback from the community concerning the range of
} concentrations that we could try as well as the compatibility of osmium with
} other fixatives (paraformaldehyde, glutaraldehyde). The last point is
} expecially important because one of our samples is whole anther and the last
} thing we need is black osmium metal ppt in an enclosed space.
}
}
}
} Thank you kindly for any suggestions,
}





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From: fclaabs-at-iastate.edu
Date: Wed, 27 Apr 2011 10:57:52 -0500
Subject: [Microscopy] Re: problem with compressed air-thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Good Morning
We have two 160 liter LN DeWars for general usage in our lab. We tap off the head pressure with standard compressed air connections typical of what is used in auto repair shops connected to a 3/8” OD Dekoron tubing manifold to all our labs. The head pressure is normally about 20 PSI. We use this free, dry and very pure nitrogen gas to vent, purge and backfill all our instruments with a low pressure regulator at the instrument. It has worked well without any problems for quite some time. With two supply DeWars we can switch from one source to the other when either supply is empty resulting in a constant nitrogen source. 20PSI may not be enough for some applications but for most of our uses it is adequate.
Fran Laabs
________________________________________
X-from: kenconverse-at-qualityimages.biz [kenconverse-at-qualityimages.biz]
Sent: Tuesday, April 26, 2011 1:42 PM
To: fclaabs-at-iastate.edu

Each tank is typically 220 cubic feet and with a large room and open door, I
wouldn't think that there is too big a risk. What I use in my shop is an
oil-based compressor that gets filtered through a coalescing filter that I
think is rated at .05 microns for oil mist. The filter has an indicator
that goes from green to red if the efficiency drops too much. It's still
green and has been in use for about 25 years and I've had no problems with
contamination. I only use the Freon for leak detecting with a Varian Smart
Gauge so I don't use much.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Tuesday, April 26, 2011 2:13 PM
To: kenconverse-at-qualityimages.biz

I have always been cautious with my liquid N2 for the reasons John raises
below but have never thought about compressed N2 tanks. In my microtome
room, I run 3 N2 tanks to blow off debris from my ultramicrotome knives. It
is a lot cheaper and environmentally nicer than using those old compressed
Freon cans of gas. Am I really running a serious risk here? It is a
relatively big room with an open door into the main lab. Comments? Tom




Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: John.Mardinly-at-asu.edu [mailto:John.Mardinly-at-asu.edu]
Sent: Tuesday, April 26, 2011 12:05 PM
To: Phillips, Thomas E.

I had an IDE air system on a 2010F fill up with water once when we went too
long without purging the compressor. The replacement system had an automatic
purge and an air dryer in series. Be advised that using nitrogen cylinders
for valves is ill advised: valve actuators tend to develop leaks over time,
and a catastrophic leak could not only deplete your cylinder rapidly, it
could fill the room with asphyxiant, which is an unexpected but lethal
consequence. There were multiple fatalities from nitrogen use when I was at
Intel.

A. John Mardinly,
ASU


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, April 26, 2011 1:20 AM
To: John Mardinly

Thanks to all who offered their advices. I have unplugged all the lines and
they
all contained water, but I am quite sure that the water was lying in the
bottom
because the system was off so there was no air movement. We'll probably
replace
the lines because we are almost sure that the water contained some oil. It
is
still a mystery why this happened but I don't want to care about it anymore.
In
the future we'll connect an N2 bottle in place of compressed air for the
valves.
No way that I worry again to waste 600 000 euros worth of material for some
stupid moisture (you may replace "stupid" by other not-politically-correct
words
here, to better reflect my thoughts).

Regards,

Stephane


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From: michael-at-shaffer.net
Date: Wed, 27 Apr 2011 11:16:57 -0500
Subject: [Microscopy] making slide labels permanent

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I was wondering what others may be using to make their labels for glass
slides permanent and insoluble to ultrasonic cleaning in ETOH.  I’ve seen
some slides where someone had labeled with a Sharpie, then applied something
akin to clear nail polish (… except that I’d like to use something similar
for covering a tape label).  Whatever your method, would it be too much to
ask that it also hold up to acetone?

TIA  :o)
~~~~~~~~~~~~~~~~~~~~~~~~~
cheerios, michael shaffer  :o)
SEM-MLA Research Coordinator
Bruneau Centre for Research & Innovation
Memorial University
St. John's, Newfoundland
SEM-MLA Calendar:
  http://www.mun.ca/creait/maf/SEM-MLA/calendar.php





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From: cpawlowicz-at-ubmtechinsights.com
Date: Wed, 27 Apr 2011 11:39:59 -0500
Subject: [Microscopy] RE: making slide labels permanent

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


What works surprisingly well for us is the Brother P-Touch label makers.. the medium sized ones with a built in keyboard are great (don't need a computer) and can fit various height labels (up to 1"). Easily available from any office supply place (although you might have to order the larger sizes).

The labels are very robust and stand up quite well to a lot of abuse in our lab - heat, chemicals etc.

Chris Pawlowicz, B.Eng
Manager, Lab Development
UBM TechInsights
3000 Solandt Rd Ottawa ON Canada K2K 2X2
T: +1 613 576 0150
F: +1 613 599 6501
E: cpawlowicz-at-ubmtechinsights.com


----------------------------------------------------------------------------

I was wondering what others may be using to make their labels for glass slides permanent and insoluble to ultrasonic cleaning in ETOH. I've seen some slides where someone had labeled with a Sharpie, then applied something akin to clear nail polish (... except that I'd like to use something similar for covering a tape label). Whatever your method, would it be too much to ask that it also hold up to acetone?

TIA :o)
~~~~~~~~~~~~~~~~~~~~~~~~~
cheerios, michael shaffer :o)
SEM-MLA Research Coordinator
Bruneau Centre for Research & Innovation Memorial University St. John's, Newfoundland SEM-MLA Calendar:
http://www.mun.ca/creait/maf/SEM-MLA/calendar.php

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From: dcromey-at-email.arizona.edu
Date: Wed, 27 Apr 2011 11:45:29 -0500
Subject: [Microscopy] making slide labels permanent

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Michael,

If you have access to a hospital histology lab, ask the histotechs what they use (or borrow one to test).

My histotech uses a STATMARK PEN from StatLab Medical Products in Lewisville KY (800-442-3573) http://www.statlab.com. They are moderately expensive and need to be capped to ensure they don't dry out, but they work.

Doug

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Douglas W. Cromey, M.S. - Assistant Scientific Investigator
Dept. of Cell Biology & Anatomy, University of Arizona
1501 N. Campbell Ave, Tucson, AZ 85724-5044 USA

office: AHSC 4212 email: Cromey-at-Arizona.edu
voice: 520-626-2824 fax: 520-626-2097

http://swehsc.pharmacy.arizona.edu/exppath/
Home of: "Microscopy and Imaging Resources on the WWW"


-----Original Message-----
X-from: michael-at-shaffer.net [mailto:michael-at-shaffer.net]
Sent: Wednesday, April 27, 2011 9:17 AM
To: Cromey, Douglas W - (dcromey)

I was wondering what others may be using to make their labels for glass slides permanent and insoluble to ultrasonic cleaning in ETOH.  I've seen some slides where someone had labeled with a Sharpie, then applied something akin to clear nail polish (. except that I'd like to use something similar for covering a tape label).  Whatever your method, would it be too much to ask that it also hold up to acetone?

TIA  :o)
~~~~~~~~~~~~~~~~~~~~~~~~~
cheerios, michael shaffer  :o)
SEM-MLA Research Coordinator
Bruneau Centre for Research & Innovation Memorial University St. John's, Newfoundland SEM-MLA Calendar:
  http://www.mun.ca/creait/maf/SEM-MLA/calendar.php





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From: dcromey-at-email.arizona.edu
Date: Wed, 27 Apr 2011 11:54:18 -0500
Subject: [Microscopy] making slide labels permanent

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I should have also mentioned that we have a printer that we purchased that prints directly onto the painted end of a microscope slide. It is completely solvent resistant. The one we have is particular about the brand of slide we use, but my understanding is that when Thermo-Fisher bought the product line from the original designers, T-F re-worked it so that it was not so fussy. This works well for the 15,000+ histology slides that my University service lab does per year.

We chose this product (Accuplace PSLIM) because it was the least expensive direct slide labeling device available at the time and our tests of solvent-resistant stick-on labels left us unimpressed.

The product is now distributed exclusively by Thermo-Fisher (at least in the US).
http://www.thermoscientific.com/ecomm/servlet/productsdetail?productId=11962242&groupType=PRODUCT&searchType=0&storeId=11152

I have no commercial interest in this product.
Doug

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Douglas W. Cromey, M.S. - Assistant Scientific Investigator
Dept. of Cell Biology & Anatomy, University of Arizona
1501 N. Campbell Ave, Tucson, AZ 85724-5044 USA

office: AHSC 4212 email: Cromey-at-Arizona.edu
voice: 520-626-2824 fax: 520-626-2097

http://swehsc.pharmacy.arizona.edu/exppath/
Home of: "Microscopy and Imaging Resources on the WWW"


-----Original Message-----
X-from: michael-at-shaffer.net [mailto:michael-at-shaffer.net]
Sent: Wednesday, April 27, 2011 9:17 AM
To: Cromey, Douglas W - (dcromey)

I was wondering what others may be using to make their labels for glass slides permanent and insoluble to ultrasonic cleaning in ETOH.  I've seen some slides where someone had labeled with a Sharpie, then applied something akin to clear nail polish (. except that I'd like to use something similar for covering a tape label).  Whatever your method, would it be too much to ask that it also hold up to acetone?

TIA  :o)
~~~~~~~~~~~~~~~~~~~~~~~~~
cheerios, michael shaffer  :o)
SEM-MLA Research Coordinator
Bruneau Centre for Research & Innovation Memorial University St. John's, Newfoundland SEM-MLA Calendar:
  http://www.mun.ca/creait/maf/SEM-MLA/calendar.php





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From: michael-at-shaffer.net
Date: Wed, 27 Apr 2011 12:21:28 -0500
Subject: [Microscopy] making slide labels permanent (II)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thanks to those who have responded, but I should've also mentioned that I
don't want anyone here relying on interpreting someone else's script
(student come and they go, and I cannot read half of them), so it does need
to be a labeling system.

We have a Brother P-Touch labeler, but I wouldn't have considered the
adhesive to survive many ETOH usonic bathes (but I can put it to the test).
Also because it would be labeling thousands of polished acrylic blocks, I
can also consider a different labeler, because I am wanting to archive these
sections and hope they last.

TIAA :o)
~~~~~~~~~~~ previous query ~~~~~~~~~~~~
I was wondering what others may be using to make their labels for glass
slides permanent and insoluble to ultrasonic cleaning in ETOH.  I’ve seen
some slides where someone had labeled with a Sharpie, then applied something
akin to clear nail polish (… except that I’d like to use something similar
for covering a tape label).  Whatever your method, would it be too much to
ask that it also hold up to acetone?

TIA  :o)
~~~~~~~~~~~~~~~~~~~~~~~~~
cheerios, michael shaffer  :o)
SEM-MLA Research Coordinator
Bruneau Centre for Research & Innovation
Memorial University
St. John's, Newfoundland
SEM-MLA Calendar:
  http://www.mun.ca/creait/maf/SEM-MLA/calendar.php





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From: donovan-at-uoregon.edu
Date: Wed, 27 Apr 2011 15:40:49 -0500
Subject: [Microscopy] University of Oregon- CAMCOR Research Assistant/Lab Manager

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Research Assistant/CAMCOR Laboratory Manager
Posting: 11114
Location: Eugene
Closed: Open Until Filled

The Laboratory Manager provides professional technical management and
service to support CAMCOR shared technical laboratories and assets
and provides essential specific technical services to a number of
CAMCOR analytical laboratories. The Lab Manager provides over sight,
supervision and maintenance for CAMCOR shared semi-conductor labs,
optical/electrical characterization and sample preparation labs and
specific technical sample preparation and instrument operation for
several of the laboratories including the NanoFabrication and
MicroAnalytical facilities. The Lab Manager will provide supervision
and instruction for students using the shared laboratories, optical
microscopes, computers, scanners and other shared equipment. The Lab
Manager provides computer backup and file sharing maintenance and
support for all facilities. The Lab Manager will work closely with
the CAMCOR Office Manager and provide back-up assistance as needed to
ensure that all necessary operations of the CAMCOR lab facilities are managed.

Qualifications: Bachelor's degree in a science related field and
three years of experience in supervision or lead work of laboratory
management staff and students.

This position will be hired at a .40 FTE with the possibility of an
increase upwards to 1.0 FTE with growth of CAMCOR.
For complete application instructions, see job page at: hr.uoregon.edu/jobs.

EO/AA/ADA institution committed to cultural diversity.



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From: dsherman-at-purdue.edu
Date: Wed, 27 Apr 2011 21:34:43 -0500
Subject: [Microscopy] Question about EDS results.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

We have a question related to rations of elements in a spectrum quant.

A student was measure Cu, Zn, Sn and Se in a sample. He had vastly
different cation ratios depending on whether he included Se or did not
include Se in the quantization of a single spectrum. He expected that
adding an element to the quantization would not change the ratios of the
other elements when analyzing the same spectra.

He used an accelerating voltage of 25 kV and a piece of Cu tape (single
sided) for quant optimization. He had a high count rate (~5 kcps) and
recorded data for 120s. After recording the data, he specified only the
cations for one quantization report and then included Se in the next
quantization. He was using the Kalpha lines of Cu and Zn and the Lalpha
lines of Sn. There is no overlap in the emission peaks. See the attached
data. (He accidentally included Ge in the first data set,
even though it was not present, but assume this would not
significantly affect the results as the Kalpha of Ge also does not
overlap and its concentration was very low.)


Element Weight% Atomic%

Cu K 10.13 12.72
Zn K 6.88 8.39
Ge K 0.19 0.21
Se L 68.23 68.89
Sn L 14.56 9.78

Totals 100.00


Element Weight% Atomic%

Cu K 34.58 43.32
Zn K 23.38 28.48
Sn L 42.04 28.20

Totals 100.00

Assuming no overlap in the emission peaks, do relative amounts change
when more elements are specified to be fit? Should he expect the
accuracy of fits to be worse when specifying more elements? He is mostly
concerned with the ratios of elements (say, Zn/Sn), and it seems these
ratios are changing when he specify more elements.

Any explanation of the results would be appreciated.

Debby


---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy





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15, 28 -- Date: Wed, 27 Apr 2011 22:34:41 -0400
15, 28 -- Subject: Question about EDS results.
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From: frah0010-at-umn.edu
Date: Wed, 27 Apr 2011 22:15:50 -0500
Subject: [Microscopy] Re: Question about EDS results.

Contents Retrieved from Microscopy Listserver Archives
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Hi Debby,

For standardless, normalized EDS data with missing elements and an unnecessarily high voltage, the ratios of Cu-Zn-Sn are actually pretty good: 12.7-8.4-9.8 vs 43.3-28.5-28.2, so roughly 1.5-1-1. Given the errors involved, that is probably about as good as you're going to get. Standards aren't optional for "quantitation." Normalizing masks the errors involved. Missing elements affect the matrix corrections in unpredictable ways. High accelerating voltages make this worse by making X-ray absorption greater. Doing quicky semi-quant EDS will yield that degree of error -- it is generous to call that "quantitation." Actual quantitative EDS analysis is what your student needs to do, or better yet, greater accuracy and precision can be gained using quantitative EMPA-WDS instead.

Best,
Ellery


Ellery Frahm, Ph.D.
Research Associate, Department of Geology & Geophysics
Manager & Principal Analyst, Electron Microprobe Laboratory
University of Minnesota - Twin Cities campus
Lab website: http://probelab.geo.umn.edu/
Personal: http://web.mac.com/elleryfrahm/





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From: jsb43-at-cam.ac.uk
Date: Thu, 28 Apr 2011 03:42:19 -0500
Subject: [Microscopy] Re: Question about EDS results.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Debby,

The presence or absence of Se can have an appreciable effect on the ZAF
correction especially if it is present in the sample in significant
quantities.

Se has ionization energies at 11.2 keV (Ka), 12.5 keV (Kb) & 1.38 keV (L).
I would expect the following:

Sn K lines (25.2, 28.6 keV) to be absorbed by Se K edges.
Se K edges to fluoresce Cu K (8.0 & 8.8 keV) and Zn K (8.6 & 9.6 keV)
Se L lines to absorb Sn L lines (3.4, 3.7 keV).

Notice that Se tends to absorb Sn-related X-rays, but increase the Cu & Zn
X-ray intensities, i.e. the ZAF correction for Se has opposite effects on
the Sn relative to the Cu/Zn.

Looking at the first set of data the elemental ratio Cu:Zn:Sn is about
6:4:5. With the Se inclusion this becomes 6:4:4, which is not that
significant a change. This looks fine to me.

Yours, Jon

} Hi all,
}
} We have a question related to rations of elements in a spectrum quant.
}
} A student was measure Cu, Zn, Sn and Se in a sample. He had vastly
} different cation ratios depending on whether he included Se or did not
} include Se in the quantization of a single spectrum. He expected that
} adding an element to the quantization would not change the ratios of the
} other elements when analyzing the same spectra.
}
} He used an accelerating voltage of 25 kV and a piece of Cu tape (single
} sided) for quant optimization. He had a high count rate (~5 kcps) and
} recorded data for 120s. After recording the data, he specified only the
} cations for one quantization report and then included Se in the next
} quantization. He was using the Kalpha lines of Cu and Zn and the Lalpha
} lines of Sn. There is no overlap in the emission peaks. See the attached
} data. (He accidentally included Ge in the first data set,
} even though it was not present, but assume this would not
} significantly affect the results as the Kalpha of Ge also does not
} overlap and its concentration was very low.)
}
}
} Element Weight% Atomic%
}
} Cu K 10.13 12.72
} Zn K 6.88 8.39
} Ge K 0.19 0.21
} Se L 68.23 68.89
} Sn L 14.56 9.78
}
} Totals 100.00
}
}
} Element Weight% Atomic%
}
} Cu K 34.58 43.32
} Zn K 23.38 28.48
} Sn L 42.04 28.20
}
} Totals 100.00
}
} Assuming no overlap in the emission peaks, do relative amounts change
} when more elements are specified to be fit? Should he expect the
} accuracy of fits to be worse when specifying more elements? He is mostly
} concerned with the ratios of elements (say, Zn/Sn), and it seems these
} ratios are changing when he specify more elements.
}
} Any explanation of the results would be appreciated.
}
} Debby
}
}
} ---
} Debby Sherman, Director Phone: 765-494-6666
} Life Science Microscopy Facility FAX: 765-494-5896
} Purdue University E-mail: dsherman-at-purdue.edu
} S-052 Whistler Building
} 170 S. University Street
} West Lafayette, IN 47907
} http://www.ag.purdue.edu/facilities/microscopy
}
}
}
}
}
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From: oshel1pe-at-cmich.edu
Date: Thu, 28 Apr 2011 09:16:28 -0500
Subject: [Microscopy] Fwd: Ask-A-Microscopist bone methods for TEM

Contents Retrieved from Microscopy Listserver Archives
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} Date: Thu, 28 Apr 2011 06:37:16 -0700
} From: Georgianne Ciraolo {Georgianne.Ciraolo-at-cchmc.org}
}
} realname - Georgianne Ciraolo
} Email - Georgianne.Ciraolo-at-cchmc.org
} ORGANIZATION - Cincinnati Children's Hospital Dept. of Pathology
} EDUCATION - Graduate College
} LOCATION - Cincinnati Ohio USA
} SUBJECT_OF_QUESTION - fixation of mouse femurs for transmission
} electrom microscopy
} QUESTION - Does anyone have a protocol for fixation of bone for TEM
} ? Do I need to decal or is there some other method? Any
} suggestions would be greatly appreciated.
}
} Thanks
}
} Georgianne Ciraolo
--
***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
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From: Yankova-at-neuron.uchc.edu
Date: Thu, 28 Apr 2011 10:23:19 -0500
Subject: [Microscopy] TEM on motor end plates

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Hello everyone,

We have a researcher who wants to do TEM on motor end plates from a mouse diaphragm . Is there a good way to localize NMJ before we process the tissue for TEM?
Any advice will be greatly appreciated.

Thanks,
Maya Yankova, M.Sc.
Research Assistant 3
Central Electron Microscopy Facility
Department of Molecular, Microbial & Structural Biology
University of Connecticut Health Center
263 Farmington Avenue
Farmington, CT 06030-3305
ph: 860.679.2395
yankova-at-neuron.uchc.edu






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From: Tracy.Lawrence-at-inspection.gc.ca
Date: Thu, 28 Apr 2011 12:55:56 -0500
Subject: [Microscopy] TEM Alignment

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Hello All,
I am a relatively new user and only operator of our Hitachi-7100 TEM.
I went to use the instrument for the first time in a month and was not
able to find the beam. I have bright illumination but no focussed beam.
I have backed out the apertures and specimen holder to adjust the Gun
alignment to get the brightest illumination at the largest spot size.
There looks to be somewhat of a beam at the top of the screen but I am
unable to get it to the centre without losing it all together.

I know this problem is well below the level of discussion on this
ListServ so if you have any suggestions please feel free to contact me
off line.

Thank you Tracy

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Tracy Lawrence
(250) 363-6650 ext 304 | Tracy.Lawrence-at-inspection.gc.ca
Facsimile / Télécopieur :(250)363-6661
Virology Technician, Canadian Food Inspection Agency
Agence Canadienne d'inspection des aliments
8801 East Saanich Road | 8801 Rue Saanich Est Sidney BC V8L 1H3
Government of Canada | Gouvernement du Canada
www.inspection.gc.ca
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


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5, 16 -- From: "Tracy Lawrence" {Tracy.Lawrence-at-inspection.gc.ca}
5, 16 -- To: {Microscopy-at-microscopy.com}
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From: Tracy.Lawrence-at-inspection.gc.ca
Date: Thu, 28 Apr 2011 13:45:03 -0500
Subject: [Microscopy] TEM Alignment

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thank you all for your suggestions. I hesitate to tell you what the
problem was but I guess its a learning experience...the shutter was
closed.

Tracy


Hello All,
I am a relatively new user and only operator of our Hitachi-7100 TEM.
I went to use the instrument for the first time in a month and was not
able to find the beam. I have bright illumination but no focussed beam.
I have backed out the apertures and specimen holder to adjust the Gun
alignment to get the brightest illumination at the largest spot size.
There looks to be somewhat of a beam at the top of the screen but I am
unable to get it to the centre without losing it all together.

I know this problem is well below the level of discussion on this
ListServ so if you have any suggestions please feel free to contact me
off line.

Thank you Tracy

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Tracy Lawrence
(250) 363-6650 ext 304 | Tracy.Lawrence-at-inspection.gc.ca
Facsimile / Télécopieur :(250)363-6661
Virology Technician, Canadian Food Inspection Agency
Agence Canadienne d'inspection des aliments
8801 East Saanich Road | 8801 Rue Saanich Est Sidney BC V8L 1H3
Government of Canada | Gouvernement du Canada
www.inspection.gc.ca
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~



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From: DusevichV-at-umkc.edu
Date: Thu, 28 Apr 2011 14:30:36 -0500
Subject: [Microscopy] RE: Fwd: Ask-A-Microscopist bone methods for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Georgianne,
As usual, the best way to fix a mouse bone is by perfusion. 2.5% glut works fine. If perfusion is not possible, just go as with any other tissue: put a small piece of it in fixative as soon as possible. Splitting a bone can help for better (faster) fixation. If bone was split, then length is of no importance, it could be several mm. Main difference from other tissues: fix bone longer; 2-4 hrs at room temperature, or overnight at 4 Celsius. Only after fixation you can demineralize a bone, if you need to (if you are looking not for mineral distribution, but are interested in collagen, osteocytes, etc.)
Good luck,
Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} -----Original Message-----
} From: oshel1pe-at-cmich.edu [mailto:oshel1pe-at-cmich.edu]
} Sent: Thursday, April 28, 2011 9:17 AM
} To: Dusevich, Vladimir
} Subject: [Microscopy] Fwd: Ask-A-Microscopist bone methods for TEM
}
}
}
}
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}
} } Date: Thu, 28 Apr 2011 06:37:16 -0700
} } From: Georgianne Ciraolo {Georgianne.Ciraolo-at-cchmc.org}
} }
} } realname - Georgianne Ciraolo
} } Email - Georgianne.Ciraolo-at-cchmc.org
} } ORGANIZATION - Cincinnati Children's Hospital Dept. of Pathology
} } EDUCATION - Graduate College
} } LOCATION - Cincinnati Ohio USA
} } SUBJECT_OF_QUESTION - fixation of mouse femurs for transmission
} } electrom microscopy
} } QUESTION - Does anyone have a protocol for fixation of bone for TEM
} } ? Do I need to decal or is there some other method? Any
} } suggestions would be greatly appreciated.
} }
} } Thanks
} }
} } Georgianne Ciraolo
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From: Tracy.Lawrence-at-inspection.gc.ca
Date: Thu, 28 Apr 2011 14:57:53 -0500
Subject: [Microscopy] Re: TEM Alignment

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

What an emotional day- tears to laughter! Thank you Jan.

Tracy

} } } Jan Leunissen - Aurion {leunissen-at-aurion.nl} 4/28/2011 12:03 pm
} } }
I should tell you what it was, so you can smile as well:

I was in Vienna last year to do some tests. And you should know that I
am not actively involved with an institute, out of practice somewhat (in
my defense, weak... but still).
Had only worked with the Morgagni once or twice, trying to do all well
along the instructions I had received. So ... switched on HT, started up
the filament... nothing.
Checked if I had made a mistake ... no, didn't seem like that, HT was
on, we had a filament current as well as a beam current, but the TEM
chamber was dark as.

I thought: I'll be b...d if I have to ask for help, after all those
years being an electron microscopist.... And of course there is also
that feeling of looking silly.
After 10 minutes of trying, I gave up and was about to get help. Then I
turned the room lights on... and there was the reason for not getting
any beam: the cover was still on the glass pane of the viewing chamber!
I sat there laughing for a few minutes and felt so silly. Decided to
tell the friendly crew in Vienna anyway, but they still tease me with
it, it was so funny.

Well, hope that made you smile too.

Cheers

Jan

On 29/04/2011, at 6:45 AM, Tracy.Lawrence-at-inspection.gc.ca wrote:

}
}
}
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}
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}
} Thank you all for your suggestions. I hesitate to tell you what the
} problem was but I guess its a learning experience...the shutter was
} closed.
}
} Tracy
}
}
} Hello All,
} I am a relatively new user and only operator of our Hitachi-7100 TEM.

} I went to use the instrument for the first time in a month and was
not
} able to find the beam. I have bright illumination but no focussed
beam.
} I have backed out the apertures and specimen holder to adjust the
Gun
} alignment to get the brightest illumination at the largest spot
size.
} There looks to be somewhat of a beam at the top of the screen but I
am
} unable to get it to the centre without losing it all together.
}
} I know this problem is well below the level of discussion on this
} ListServ so if you have any suggestions please feel free to contact
me
} off line.
}
} Thank you Tracy
}
} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
} Tracy Lawrence
} (250) 363-6650 ext 304 | Tracy.Lawrence-at-inspection.gc.ca
} Facsimile / Télécopieur :(250)363-6661
} Virology Technician, Canadian Food Inspection Agency
} Agence Canadienne d'inspection des aliments
} 8801 East Saanich Road | 8801 Rue Saanich Est Sidney BC V8L 1H3
} Government of Canada | Gouvernement du Canada
} www.inspection.gc.ca
} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
}
}
}
} ==============================Original
Headers==============================
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2011
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14, 19 -- From: "Tracy Lawrence" {Tracy.Lawrence-at-inspection.gc.ca}
14, 19 -- To: {Microscopy-at-microscopy.com}
14, 19 -- Subject: Re: [Microscopy] TEM Alignment
14, 19 -- References: {201104281845.p3SIjFaH001736-at-ns.microscopy.com}
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From: tina-at-pbrc.hawaii.edu
Date: Thu, 28 Apr 2011 15:04:06 -0500
Subject: [Microscopy] TEM Alignment

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

OK, show of hands; how many of you have done this, even briefly?

Tracy, we all have stories like yours! Welcome to the club.

Aloha,
Tina

} } } } Jan Leunissen - Aurion {leunissen-at-aurion.nl} 4/28/2011 12:03 pm
} } } }
} I should tell you what it was, so you can smile as well:
}
} I was in Vienna last year to do some tests. And you should know that I
} am not actively involved with an institute, out of practice somewhat (in
} my defense, weak... but still).
} Had only worked with the Morgagni once or twice, trying to do all well
} along the instructions I had received. So ... switched on HT, started up
} the filament... nothing.
} Checked if I had made a mistake ... no, didn't seem like that, HT was
} on, we had a filament current as well as a beam current, but the TEM
} chamber was dark as.
}
} I thought: I'll be b...d if I have to ask for help, after all those
} years being an electron microscopist.... And of course there is also
} that feeling of looking silly.
} After 10 minutes of trying, I gave up and was about to get help. Then I
} turned the room lights on... and there was the reason for not getting
} any beam: the cover was still on the glass pane of the viewing chamber!
} I sat there laughing for a few minutes and felt so silly. Decided to
} tell the friendly crew in Vienna anyway, but they still tease me with
} it, it was so funny.

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: paul_hazelton-at-umanitoba.ca
Date: Thu, 28 Apr 2011 15:18:47 -0500
Subject: [Microscopy] TEM Alignment

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Tracy

As Tina says, welcome - you are now a full, initiated member of the
club. My worst happened when I was on vacation and a tech decided that
the filament was blown. Getting an enterprising group together,
including several academics, including the Unit Director .... Well,
suffice to say the Wehnalt was so badly cross threaded when they were
done that we had to replace it. While I did not laugh at the time, it
proved a very valuable teaching lesson - to me and for me to use.

Since then I prepared a (laminated) check list titled "What to do if the
screen is black." It is well used, including by me.

paul
--
Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Thu, 28 Apr 2011 15:29:11 -0500
Subject: [Microscopy] Re: TEM Alignment

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Yep.
Even better is when you do this during a demonstration for a class ...

Phil

} OK, show of hands; how many of you have done this, even briefly?
}
} Tracy, we all have stories like yours! Welcome to the club.
}
} Aloha,
} Tina
}
} } } } } Jan Leunissen - Aurion {leunissen-at-aurion.nl} 4/28/2011 12:03 pm
} } } } }
} } I should tell you what it was, so you can smile as well:
} }
} } I was in Vienna last year to do some tests. And you should know that I
} } am not actively involved with an institute, out of practice somewhat (in
} } my defense, weak... but still).
} } Had only worked with the Morgagni once or twice, trying to do all well
} } along the instructions I had received. So ... switched on HT, started up
} } the filament... nothing.
} } Checked if I had made a mistake ... no, didn't seem like that, HT was
} } on, we had a filament current as well as a beam current, but the TEM
} } chamber was dark as.
} }
} } I thought: I'll be b...d if I have to ask for help, after all those
} } years being an electron microscopist.... And of course there is also
} } that feeling of looking silly.
} } After 10 minutes of trying, I gave up and was about to get help. Then I
} } turned the room lights on... and there was the reason for not getting
} } any beam: the cover was still on the glass pane of the viewing chamber!
} } I sat there laughing for a few minutes and felt so silly. Decided to
} } tell the friendly crew in Vienna anyway, but they still tease me with
} } it, it was so funny.
}
} ****************************************************************************
} * Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
} * Biological Electron Microscope Facility * (808) 956-6251 *
} * University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
} ****************************************************************************

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: bigelow-at-umich.edu
Date: Thu, 28 Apr 2011 16:57:46 -0500
Subject: [Microscopy] RE:TEM alignment

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Yes indeed, we all do experience such events. When I first joined
the faculty of the University of Michigan the Department had just
acquired an RCA Model EML TEM. The person who had been responsible
for it's purchase had left, and I was put in charge of it. One day
I walked into the lab and tried to turn it on, but despite all my
best efforts I couldn't get the thing running. Finally, I called the
local RCA Service Engineer, Tony Boulet, for help. He showed up,
pushed the main power switch a couple of times, then walked around
behind the instrument and said, "It helps if you plug it in". It
turned out that the darned thing wasn't hard wired into the
electrical system, but simply had a power line that plugged into a
wall outlet. Somehow or other the plug had come out of the socket and
was laying peacefully on the floor. It was so embarrassing that it
was funny. I ended up taking Tony out for a steak dinner, and I
enjoyed his expert assistance and his friendship for many years
thereafter.
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

==============================Original Headers==============================
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From: William.F.Tivol-at-aero.org
Date: 04/28/2011 01:10 PM
Subject: [Microscopy] TEM Alignment

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi All,
I may have everyone beat, so my hand is definitely up. When doing
cryo-EM on a Tecnai 12 with the specimen mounted in a Gatan 626 cryostage,
one closes the gun valve to load the specimen, which has a cryoshield in
place to prevent ice contamination of the grid. After the specimen is in
place and the temperature has stabilized, the gun valve is opened, the
cryoshield is retracted, and the specimen can be observed. At one time or
another I have had the experience of not seeing the beam due to forgetting
each of the three items: opening the valve, retracting the shield, and,
of course, failing to remove the cover.
Yours,
Bill



X-from: tina-at-pbrc.hawaii.edu
To: William.F.Tivol-at-aero.org




OK, show of hands; how many of you have done this, even briefly?

Tracy, we all have stories like yours! Welcome to the club.

Aloha,
Tina

} } } } Jan Leunissen - Aurion {leunissen-at-aurion.nl} 4/28/2011 12:03 pm
} } } }
} I should tell you what it was, so you can smile as well:
}
} I was in Vienna last year to do some tests. And you should know that I
} am not actively involved with an institute, out of practice somewhat (in
} my defense, weak... but still).
} Had only worked with the Morgagni once or twice, trying to do all well
} along the instructions I had received. So ... switched on HT, started up
} the filament... nothing.
} Checked if I had made a mistake ... no, didn't seem like that, HT was
} on, we had a filament current as well as a beam current, but the TEM
} chamber was dark as.
}
} I thought: I'll be b...d if I have to ask for help, after all those
} years being an electron microscopist.... And of course there is also
} that feeling of looking silly.
} After 10 minutes of trying, I gave up and was about to get help. Then I
} turned the room lights on... and there was the reason for not getting
} any beam: the cover was still on the glass pane of the viewing chamber!
} I sat there laughing for a few minutes and felt so silly. Decided to
} tell the friendly crew in Vienna anyway, but they still tease me with
} it, it was so funny.


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From: giselle.walker-at-anatomy.otago.ac.nz
Date: Thu, 28 Apr 2011 18:20:52 -0500
Subject: [Microscopy] HPF on invertebrate embryos

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Does anyone have any experience of high pressure freezing of whole embryos of invertebrates, other than Drosophila?

I'm aware that this is a fairly wide area, and that there is a lot of Caenorhabditis literature. I'm interested in invertebrates where the embryos are at the upper size limit of being squashed into an HPF planchette.

I've found the nice McDonald and Morphew paper from 1993 on Drosophila and Strongylocentrotus, and the mention in various papers that wasps had been done in Berkeley, but as far as I can tell, all the other invertebrate embryo papers deal with bits of tissue from the embryos. I'm probably missing stuff though... any pointers greatly appreciated.

Thanks

Giselle


--
Dr Giselle Walker
Microscopy Otago - Electron Microscopy
Department of Anatomy & Structural Biology
University of Otago
P.O. Box 913, Dunedin 9054
New Zealand

Phone: +64 (0)3 479 7301, +64 (0)210 403 669
Email: giselle.walker-at-anatomy.otago.ac.nz





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From: William.F.Tivol-at-aero.org
Date: 04/28/2011 04:27 PM
Subject: [Microscopy] HPF on invertebrate embryos

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Giselle,
I have not had experience freezing embryos, but you may want to
look at Jan Leunissen's technique of constant-volume freezing, which can
work for large volumes.
Yours,
Bill



X-from: giselle.walker-at-anatomy.otago.ac.nz
To: William.F.Tivol-at-aero.org



Does anyone have any experience of high pressure freezing of whole embryos
of invertebrates, other than Drosophila?

I'm aware that this is a fairly wide area, and that there is a lot of
Caenorhabditis literature. I'm interested in invertebrates where the
embryos are at the upper size limit of being squashed into an HPF
planchette.

I've found the nice McDonald and Morphew paper from 1993 on Drosophila and
Strongylocentrotus, and the mention in various papers that wasps had been
done in Berkeley, but as far as I can tell, all the other invertebrate
embryo papers deal with bits of tissue from the embryos. I'm probably
missing stuff though... any pointers greatly appreciated.

Thanks

Giselle


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From: leunissen-at-aurion.nl
Date: Thu, 28 Apr 2011 19:12:40 -0500
Subject: [Microscopy] HPF on invertebrate embryos

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Hi Giselle, thanks Bill

We tested tube diameters up to 0.8 mm internal diameter (1.6 mm outer diameter) which worked for yeast and CE. Not sure if they would be ok for more sensitive material as at least for part of the tube diameter the freezing speed may be too low. Impossible to predict, you'd have to give it a go.

Good luck.


Jan

On 29/04/2011, at 11:34 AM, William.F.Tivol-at-aero.org wrote:

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} Dear Giselle,
} I have not had experience freezing embryos, but you may want to
} look at Jan Leunissen's technique of constant-volume freezing, which can
} work for large volumes.
} Yours,
} Bill
}
}
}
} X-from: giselle.walker-at-anatomy.otago.ac.nz
} To: William.F.Tivol-at-aero.org
} Date: 04/28/2011 04:27 PM
} Subject: [Microscopy] HPF on invertebrate embryos
}
}
}
} Does anyone have any experience of high pressure freezing of whole embryos
} of invertebrates, other than Drosophila?
}
} I'm aware that this is a fairly wide area, and that there is a lot of
} Caenorhabditis literature. I'm interested in invertebrates where the
} embryos are at the upper size limit of being squashed into an HPF
} planchette.
}
} I've found the nice McDonald and Morphew paper from 1993 on Drosophila and
} Strongylocentrotus, and the mention in various papers that wasps had been
} done in Berkeley, but as far as I can tell, all the other invertebrate
} embryo papers deal with bits of tissue from the embryos. I'm probably
} missing stuff though... any pointers greatly appreciated.
}
} Thanks
}
} Giselle
}
}
} ==============================Original Headers==============================
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==============================Original Headers==============================
9, 20 -- From leunissen-at-aurion.nl Thu Apr 28 19:12:39 2011
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From: ehaller-at-health.usf.edu
Date: Fri, 29 Apr 2011 07:19:01 -0500
Subject: [Microscopy] Re: TEM Alignment

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There's also those of us (who will go unnamed) who forget to remove the digital camera from the side port of the microscope when finished using the microscope. When we fire up the scope the next day at low mag and don't see the beam, it may take a while for the "light" to go on and remember that the camera's still blocking the beam!

Ed

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: Tracy.Lawrence-at-inspection.gc.ca [Tracy.Lawrence-at-inspection.gc.ca]
Sent: Thursday, April 28, 2011 4:03 PM
To: Haller, Edward

What an emotional day- tears to laughter! Thank you Jan.

Tracy

} } } Jan Leunissen - Aurion {leunissen-at-aurion.nl} 4/28/2011 12:03 pm
} } }
I should tell you what it was, so you can smile as well:

I was in Vienna last year to do some tests. And you should know that I
am not actively involved with an institute, out of practice somewhat (in
my defense, weak... but still).
Had only worked with the Morgagni once or twice, trying to do all well
along the instructions I had received. So ... switched on HT, started up
the filament... nothing.
Checked if I had made a mistake ... no, didn't seem like that, HT was
on, we had a filament current as well as a beam current, but the TEM
chamber was dark as.

I thought: I'll be b...d if I have to ask for help, after all those
years being an electron microscopist.... And of course there is also
that feeling of looking silly.
After 10 minutes of trying, I gave up and was about to get help. Then I
turned the room lights on... and there was the reason for not getting
any beam: the cover was still on the glass pane of the viewing chamber!
I sat there laughing for a few minutes and felt so silly. Decided to
tell the friendly crew in Vienna anyway, but they still tease me with
it, it was so funny.

Well, hope that made you smile too.

Cheers

Jan

On 29/04/2011, at 6:45 AM, Tracy.Lawrence-at-inspection.gc.ca wrote:

}
}
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}
} Thank you all for your suggestions. I hesitate to tell you what the
} problem was but I guess its a learning experience...the shutter was
} closed.
}
} Tracy
}
}
} Hello All,
} I am a relatively new user and only operator of our Hitachi-7100 TEM.

} I went to use the instrument for the first time in a month and was
not
} able to find the beam. I have bright illumination but no focussed
beam.
} I have backed out the apertures and specimen holder to adjust the
Gun
} alignment to get the brightest illumination at the largest spot
size.
} There looks to be somewhat of a beam at the top of the screen but I
am
} unable to get it to the centre without losing it all together.
}
} I know this problem is well below the level of discussion on this
} ListServ so if you have any suggestions please feel free to contact
me
} off line.
}
} Thank you Tracy
}
} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
} Tracy Lawrence
} (250) 363-6650 ext 304 | Tracy.Lawrence-at-inspection.gc.ca
} Facsimile / Télécopieur :(250)363-6661
} Virology Technician, Canadian Food Inspection Agency
} Agence Canadienne d'inspection des aliments
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} www.inspection.gc.ca
} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
}
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20, 40 -- From ehaller-at-health.usf.edu Fri Apr 29 07:19:00 2011
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From: albayrakonder-at-gmail.com
Date: Fri, 29 Apr 2011 09:25:38 -0500
Subject: [Microscopy] FESEM - variable pressure

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Dear All,

We have planned to buy the FESEM (Zeiss Supra 55) which will be served
for all the units of the university (from dept of engineering to dept
of medicine). However variable pressure (VP) mode caused indecision
since we have critical point drier and sputter coater.

In the catalog of the FESEM, it is mentioned that variable pressure
(VP) mode brings many advantages for imaging non-conducting specimens
without charging artifacts.

Would you please inform me about the effectiveness of the VP mode (up
to 133 Pa) at the FESEM (Zeiss Supra 55). Moreover, how does the VP
mode affect the performance (negatively or positively) of the FESEM?



Best regards.

==============================Original Headers==============================
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From: jmircheski-at-us.es
Date: Fri, 29 Apr 2011 10:03:34 -0500
Subject: [Microscopy] TEM on motor end plates

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Yes, Maya, do a TEM of them :)

I tried to label end plates with rhodamine labelled bungarotoxin, but I
didn't see any fluorescence after embedding in resin. I guess the
dehydration killed it. I might try to label some NMJ specific receptor with
a primary AB and then label the AB with a biotin or streptavidine secondary,
expecting to see dark spots at the sites of the NMJs (end plates). But that
is my "educated guess", I don't know if it actually works.
Right now, I take the muscle sample (not from diaphragm) where the nerve
branches to the smallest branches and try to section it there. Likewise, the
probability to cut through a NMJ increases. So far, it goes well, last week
in one day I hit NMJs from 4 different muscles. But before that I had a
single sample which I was cutting for 2 consecutive days without success.
When I re-checked it, it came out that the nerve was not branching enough
there...
After the Osmium treatment, the nerve is easy to follow and I can see it
very nice in my samples (the muscle is very thin, I don't know if it will be
the case with the diaphragm). binocular magnification of 3x was enough to
localize the sites.

Hope this helps.

Regards,

Josif

P.S. Here come the auto-replies... One reason why I don't like posting to
the list.

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS)
Hosp.Univ. Virgen del Rocío/CSIC/Univ. de Sevilla y
Dpto. Fisiologia Médica y Biofísica
Universidad de Sevilla
Facultad de Medicina
Avda. Sánchez-Pizjuán 4
41009-Sevilla
 
Phone:+34-954556103
Fax:+34-954551769
e-mail: jmircheski-at-us.es

-----Original Message-----
X-from: Yankova-at-neuron.uchc.edu [mailto:Yankova-at-neuron.uchc.edu]
Sent: Thursday, April 28, 2011 5:31 PM
To: jmircheski-at-us.es



Hello everyone,

We have a researcher who wants to do TEM on motor end plates from a mouse
diaphragm . Is there a good way to localize NMJ before we process the tissue
for TEM?
Any advice will be greatly appreciated.

Thanks,
Maya Yankova, M.Sc.
Research Assistant 3
Central Electron Microscopy Facility
Department of Molecular, Microbial & Structural Biology
University of Connecticut Health Center
263 Farmington Avenue
Farmington, CT 06030-3305
ph: 860.679.2395
yankova-at-neuron.uchc.edu






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From: FMonson-at-wcupa.edu
Date: Fri, 29 Apr 2011 13:31:22 -0500
Subject: [Microscopy] FESEM - variable pressure

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Hi Albay,

The resolution should not be greatly affected by VP, but secondary electrons are weak and are easily deflected by bigger things in the environment like heavy gas molecules. The upside is that VP (gas assisted SEM) depresses charging and for many specimens, that will be critical. There is little to lose by having the VP capability on new SEMs - unless users of the VP mode are permitted to view/study specimens with substantial volatiles which leave contaminants behind. These latter specimens should only be studied in conjunction with the use of a cryo accessory. On our ESEM, we can add a 'cold' stage to help restrain volatiles (like HOH in hydrated specimens - we can work up to 20 Torr). VP can ameliorate the effect of having a poorly regulated HV supply that can't maintain constant power delivery over long periods of time at low accelerating voltages - thus, for really good EDS, carefully spec your voltage regulation expectations. We have a 6kVA UPS, and even it doesn't overcome the weakness of poor regulation in the power supply of the scope. As low voltage is the only other non-coating method of depressing charging, the absence of VP can leave one with poor imaging for Point-and-ID or Mapping with EDS.

The biggest effect of gas in the chamber is alleged to be on X-Ray analysis. [see Home Page below, Links, and articles and other info on the subject - especially those from NIST. OR by this direct URL: http://cmirt.wcupa.edu/CMIRT_links.html#ESEM ]

I also recommend the following book: http://onlinelibrary.wiley.com/doi/10.1002/9780470758731.fmatter/pdf. It is about $65 on Amazon and will help all potential users to estimate the utility of VP as well as get a dose of its theoretical foundations (~220 pages-hardbound).

We survey cut slabs of rock up to 95 x 95 x 10mm, and almost all geologic thin sections (100um) of rock at 70 Pa in our Fei Quanta 400 ESEM with Oxford INCA EDS + Feature/GSR and Automate. Typical results can be seen on our site:

http://cmirt.wcupa.edu/CMIRT_petrographic_thin_sections.html

http://cmirt.wcupa.edu/P-07-70-22/P-07-70-22-Montage-Map-Garnet-1.htm [NOTE: scale bar on montage]

Good luck, and hope this helps!

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu

Original Message-----
X-from: albayrakonder-at-gmail.com [mailto:albayrakonder-at-gmail.com]
Sent: Friday, April 29, 2011 10:33 AM
To: Monson, Frederick

Dear All,

We have planned to buy the FESEM (Zeiss Supra 55) which will be served
for all the units of the university (from dept of engineering to dept
of medicine). However variable pressure (VP) mode caused indecision
since we have critical point drier and sputter coater.

In the catalog of the FESEM, it is mentioned that variable pressure
(VP) mode brings many advantages for imaging non-conducting specimens
without charging artifacts.

Would you please inform me about the effectiveness of the VP mode (up
to 133 Pa) at the FESEM (Zeiss Supra 55). Moreover, how does the VP
mode affect the performance (negatively or positively) of the FESEM?



Best regards.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:39:46 -0500
Subject: [Microscopy] viaWWW:Student projects

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Email: crnl_srbu-at-yahoo.com Name: Corneliu Sarbu

Organization: Natl. Inst. for Materials Physics, Bucharest, Romania

Title-Subject: [Filtered] Reply to "TEM of magnetic particles"

Message: In order to avoid any problem with deposition of nanoparticles
on OL pole piece you can adopt the extreme solution of embedding the
particles in a resin and afterwards processing the sample for TEM as if
it were a solid sample. It is time consuming, but is the safest.
I use that procedure when I do TEM on small grains of magnetic alloys.
It takes time and effort to prepare the sample, but it guarantees no
deposition of particles on OL pole piece will occur.
Corneliu Sarbu
Natl. Inst. for Materials Physics
Bucharest-Magurele
Romania
Tuesday, April 26, 2011 8:03 PM
} From:
"John.Mardinly-at-asu.edu" {John.Mardinly-at-asu.edu}
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When I was at Western Digital, the SEMs would periodically need to have
the final pole piece cleaned of magnetic particles, and these samples
were solid sputtered films with obvious no loose particles and sub 10nm
grain size, not powders. Be very careful with loose particles.

A. John Mardinly, ASU

-----Original Message-----
X-from: raristau-at-ims.uconn.edu [mailto:raristau-at-ims.uconn.edu] Sent:
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To: John Mardinly

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Email: brian.mcintyre-at-rochester.edu Name: Brian McIntyre

Organization: Univ of Rochester

Title-Subject: [Filtered] Student projects

Message: Hi Listers-

If you have time please checkout the web versions of this years projects
for the Univ of Rochester's Electron Microscopy course. Some
interesting stuff...

http://www.optics.rochester.edu/workgroups/cml/opt307/spr11/

Thanks!
Brian

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:40:12 -0500
Subject: [Microscopy] viaWWW:Electron microscopy on motor end plates

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Email: yankova-at-neuron.uchc.edu Name: maya Yankova

Title-Subject: [Filtered] Electron microscopy on motor end plates

Message: Hello everyone,

We have a researcher who wants to do EM on a motor endplate of a mouse
diaphragm. We would like to find a protocol to localize the motor
endplates on the muscle before the tissue is processed for EM.
Any advice would be greatly appreciated.

Thanks

Maya Yankova, M.Sc.
Research Assistant 3
Central Electron Microscopy Facility
Department of Molecular, Microbial & Structural Biology
University of Connecticut Health Center
263 Farmington Avenue
Farmington, CT 06030-3305
ph: 860.679.2395
yankova-at-neuron.uchc.edu




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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:40:38 -0500
Subject: [Microscopy] viaWWW:Alignment of TEM

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Email: Tracy.Lawrence-at-inspection.gc.ca Name: Tracy Lawrence

Organization: CFIA

Title-Subject: [Filtered] Alignment of TEM

Message: I am a relatively new user of our Hitachi H-7100. I have very
little experience in aligning the TEM and therefore, troubleshooting the
alignment is very challenging. After a month of not using the
microscope (it was left in Evac On) I turned the insturment on and got
only a diffuse beam of light. Focusing the beam made it only slightly
brighter but did not focus the beam. I backed out both the condenser
and objective apertures to check gun alignment and I manipulated the gun
horizontal and tilt until I got the brightest light but still unable to
focus the beam. If I move to Spot Size 7 I can see a very small sliver
of bright light off to the left of the phosphorus screen. I am not sure
if this is my beam and I am unable to move it to the phosphorus screen.
I am at a loss as to what to do.
This problem is well below the level of issues discussed on this
Listserv so if anyone can offer some guidance on alignment strategies
they are welcome to contact me personally.

Thank you
Tracy

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:41:06 -0500
Subject: [Microscopy] viaWWW:SiN TEM Windows

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Email: mlibbee-at-gmail.com Name: Marissa Libbee

Organization: LBNL

Title-Subject: [Filtered] SiN TEM Windows

Message: Hello All,

Does anyone have an idea about how to separate the SiN film from the TEM
window frame? I want to preserve the structural integrity of the film
to use as a substrate for particle analysis.
Thanks!

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:41:29 -0500
Subject: [Microscopy] viaWWW:Artifacts in aldehyde fixed cells

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Email: petereaton-at-hotmail.com Name: Peter Eaton

Organization: University of Porto, POrtugal

Title-Subject: [Filtered] Artifacts in aldehyde fixed cells

Message: Hi,
I remember seeing some discussion (many years ago?), on the server about
artifacts in microscopy of biological specimens in general. Specifically
I think I read about membrane blebbing caused by aldehyde-based fixing.
Does anyone have any actual references about this? I have seen what
might be this effect, but it's hard to be sure. Thanks,
Pete.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:41:55 -0500
Subject: [Microscopy] viaWWW:SEM of particles suspended in oil

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Email: benj-at-duke.edu Name: Ben

Organization: Duke university / CEE dpt.

Title-Subject: [Filtered] SEM of particles suspended in oil.

Message: Hello,
I was wondering if someone had a method to visualize, with SEM, fine
particles suspended in an oil phase.
Let me know
Thanks much
Best
Ben
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:42:21 -0500
Subject: [Microscopy] viaWWW:Chamberscopes

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Email: cvierret-at-mst.edu Name: Clarissa Wisner

Organization: Missouri Universityof Science and Technology

Title-Subject: [Filtered] Chamberscopes

Message: Greetings,

Does anyone have experience with a SEMtech chamber scope? If so in
specific does anyone have experience with a SEMtech chamberscope on a
Hitachi S4700? Please respond in private.

Thanks


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:43:37 -0500
Subject: [Microscopy] viaWWW:does paraformaldehye fixation inactivate potentially infective

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Email: mckee-at-helix.mgh.harvard.edu Name: Mary McKee

Organization: MGH

Title-Subject: [Filtered] does paraformaldehye fixation of human tissue
inactivate potentially infective viruses like HIV?

Message: We are going to be cutting paraformaldehyde-fixed human tissue
on our cryostats. My understanding was that paraformaldehyde does not
inactivate HIV. Does anyone know if this is true? Thanks in advance.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 Apr 2011 14:51:48 -0500
Subject: [Microscopy] viaWWW:variable pressure mode -

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Email: albayrakonder-at-gmail.com Name: Onder

Title-Subject: [Filtered] variable pressure mode - FESEM

Message: Dear All,

We have planned to buy the FESEM which will be served for all the units
of the university (from dept of engineering to dept of medicine).
However variable pressure (VP) mode caused indecision. (we have critical
point drier and sputter coater).

In the catalog of the FESEM, it is mentioned that variable pressure (VP)
mode brings many advantages for imaging non-conducting specimens without
charging artifacts.
Would you please inform me about the effectiveness of the VP mode (up to
133 Pa) at the FESEM (Zeiss Supra 55). Moreover, how does the VP mode
affect the performance (negatively or positively) of the FESEM?


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 1 May 2011 16:53:32 -0500
Subject: [Microscopy] viaWWW:Bakelite in UHV ?

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Email: jds451-at-psu.edu Name: Jen Sloppy

Organization: Drexel University

Title-Subject: [Filtered] Bakelite in UHV ?

Message: Hi all,
I have some samples mounted in Bakelite that I plan to study with XPS.
Does anybody know if Bakelite outgasses? Is it mandatory to liberate the
specimens from their mounts before loading them into the chamber?

Thanks in advance for any advice.

- Jen Sloppy

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From: vray-at-partbeamsystech.com
Date: Sun, 1 May 2011 18:10:47 -0500
Subject: [Microscopy] Re: viaWWW:Bakelite in UHV ?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

As far as I recall, Bakelite is a trade name for plastics with phenolic
resin, and if so then it would outgass like mad. I'd keep Bakelite out
of vacuum system, if at all possible...

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
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} Title-Subject: [Filtered] Bakelite in UHV ?
}
} Message: Hi all,
} I have some samples mounted in Bakelite that I plan to study with XPS.
} Does anybody know if Bakelite outgasses? Is it mandatory to liberate the
} specimens from their mounts before loading them into the chamber?
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From: bigelow-at-umich.edu
Date: Sun, 1 May 2011 19:05:37 -0500
Subject: [Microscopy] Bakelite

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Bakelite is a phenol-formaldehyde polymer. If properly compounded it
should be fully cross-linked, and therefore should have a very low
vapor pressure.

The problem with metal and ceramic specimens mounted in Bakelite,
however, is that they have usually undergone a series of polishing
and etching treatments. Often there are tiny cracks in the specimens
themselves (especially if they are ceramics), or between the specimen
and the surrounding Bakelite. Then small amounts of the liquids used
in the polishing and etching processes can get into these cracks and
remain there for a long time. If this happens these fluids can
evolve when they are put into a vacuum system, and thereby degrade
the vacuum.

It is therefore difficult to predict whether or not Specimens mounted
in Bakelite (or any other material for that matter) will give you
problems.
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: eikonika-at-otenet.gr
Date: Mon, 2 May 2011 00:26:05 -0500
Subject: [Microscopy] Artifacts in aldehyde fixed cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Pete

You raise a fundamental question for biology microsopists and here I would
like to remind you of another, a bit neglected, player in the process of
aldehyde cell fixation. This player is TIME: How much time it takes for the
fixative to diffuse and reach a cell within a piece of tissue. And more
importantly, how much time passes from the moment the first tiny toxic
concentration of the fixative reaches the cell until it rises to a lethal
concentration and fixes this cell. And even before that moment, for how much
time this cell was exposed to alarm signals emitted by neighbor cells in
response to their contact with the toxic fixative milieu, and transmitted to
this cell through cell to cell contacts and junctions.

If I was a cell I would be in a state of panic during these last moments of
my life, feeling the catastrophy caused by the aldehydes that destroy my
enviroment and my family and is going to kill me too. The countless cell
functions occurring in live cells may change at sub-seconds rate. For
instance flagellae and ciliae beat three times per second, pino- and
exocytosis of plasma membrane is fast, and large molecules may change within
microseconds. Membrane blebbing can happen very rapidly, perhaps in the
course of activation of apoptotic mechanisms during this deadly fight of the
cell with the aldehydes. I don't know well the physiochemical properties of
aldehydes to estimate their diffusion times in the various animal or plant
tissues, but I am sure that they don't act instantly.


X-from the diffusion point of view, epithelial and other mesothelial or
endothelial cells lining tissue cavities would get fixed faster and better,
because a large percentage of their surface is immediately exposed to the
fixative. Ideally cells in suspension can be fixed instantly and then they
can be observed under a microscope to provide a snapshot of live cells. Even
so, what we see is far away from life. For instance, if you observe motile
spermatozoa under light microscopy they look like snakes, but if you fix
them they look more like spaghetti. And if this is true for cells like sperm
that are prepared to come out of the body, what about a tissue we excise
from an animal or during surgery and then we fix it. The cells in this
tissue, deprived from their environment and blood supply, change rapidly and
every single moment passing until final fixation counts.


I think that all these parameters together with the entire post-fixation
preparation of the sample are of paramount importance when we make our
microscopic observations and interpret our findings. In this sense the word
"artifact" sounds a little bit like aphorism. We judge what images are
closer to the "real" and ideal state we have in our mind (aesthetics are
always involved) and we choose them to represent our findings. The rest of
the images we reject, and we like to condemn them as artifacts or artefacts.
In a way, we always choose something that we wish to see and we have to be
very careful at this point. Pythagoras the philosopher forbade to his pupils
to make wishes, on the grounds that they are too young and don't really know
what to wish.

My apologies for much philosophy -we Greeks are good in this- and not
providing references. I would love to hear yours and other colleagues' views
on this subject.



Have a nice day



yorgos



Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
eikonika-at-otenet.gr
www.aim.cat
***********************************


Email: petereaton-at-hotmail.com Name: Peter Eaton

Organization: University of Porto, POrtugal

Title-Subject: [Filtered] Artifacts in aldehyde fixed cells

Message: Hi,
I remember seeing some discussion (many years ago?), on the server about
artifacts in microscopy of biological specimens in general. Specifically
I think I read about membrane blebbing caused by aldehyde-based fixing.
Does anyone have any actual references about this? I have seen what
might be this effect, but it's hard to be sure. Thanks,
Pete.


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From: swalck-at-southbaytech.com
Date: Mon, 2 May 2011 00:46:12 -0500
Subject: [Microscopy] Re: viaWWW:Bakelite in UHV ?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Will Bigelow made some comments that are right on the money. It has to be fully cross linked and can't have the polishing compounds in the cracks. You have a marvelous tool in the SEM to determine if you are going to see a contamination layer in the UHV XPS system. Although the SEM doesn't have quite as good of a vacuum as the XPS, it is still very good and the beam is very sensitive to hydrocarbon contamination. If you don't see contamination in the SEM, then your sample should be good in the XPS.

-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

US Toll Free: 1-800-728-2233
Tel: (949) 492-2600
Fax: (949) 492-1499

www.southbaytech.com
SWalck-at-SouthBayTech.com




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} Title-Subject: [Filtered] Bakelite in UHV ?
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} Message: Hi all,
} I have some samples mounted in Bakelite that I plan to study with XPS.
} Does anybody know if Bakelite outgasses? Is it mandatory to liberate the
} specimens from their mounts before loading them into the chamber?
}
} Thanks in advance for any advice.
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} - Jen Sloppy
}
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From: rosemary.white-at-csiro.au
Date: Mon, 2 May 2011 01:33:38 -0500
Subject: [Microscopy] Re: viaWWW:Artifacts in aldehyde fixed cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Pete,

The only paper I'm readily familiar with (I'm sure there are others), is
this one:

G.J. Hyde, S. Lancelle, P.K. Hepler, A.R. Hardham (1991) Freeze substitution
reveals a new model for sporangial cleavage in Phytophthora, a result with
implications for cytokinesis in other eukaryotes. Journal of Cell Science
100, 735-746
http://jcs.biologists.org/content/100/4/735.abstract

There are a number of citing articles on a similar theme.

cheers,
Rosemary

Dr Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
E rosemary.white-at-csiro.au



On 1/05/11 5:52 AM, "microscopylistserver-noreply-at-microscopy.com"
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} Email: petereaton-at-hotmail.com Name: Peter Eaton
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} Organization: University of Porto, POrtugal
}
} Title-Subject: [Filtered] Artifacts in aldehyde fixed cells
}
} Message: Hi,
} I remember seeing some discussion (many years ago?), on the server about
} artifacts in microscopy of biological specimens in general. Specifically
} I think I read about membrane blebbing caused by aldehyde-based fixing.
} Does anyone have any actual references about this? I have seen what
} might be this effect, but it's hard to be sure. Thanks,
} Pete.
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From: nizets2-at-yahoo.com
Date: Mon, 2 May 2011 05:42:42 -0500
Subject: [Microscopy] Re: TEM Alignment

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Yes sir I did them all: forget the side camera, the gun valve and the screen
cover. I confess I did them all!
May I go in peace, now?

Think positive: the worse in the mistake, the better you remember it. I've never
forgotten the screen cover twice!

regards,

Stephane



----- Original Message ----
X-from: "ehaller-at-health.usf.edu" {ehaller-at-health.usf.edu}
To: nizets2-at-yahoo.com
Sent: Fri, April 29, 2011 2:23:29 PM

There's also those of us (who will go unnamed) who forget to remove the digital
camera from the side port of the microscope when finished using the microscope.
When we fire up the scope the next day at low mag and don't see the beam, it may
take a while for the "light" to go on and remember that the camera's still
blocking the beam!

Ed

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: Tracy.Lawrence-at-inspection.gc.ca [Tracy.Lawrence-at-inspection.gc.ca]
Sent: Thursday, April 28, 2011 4:03 PM
To: Haller, Edward

What an emotional day- tears to laughter!  Thank you Jan.

Tracy

} } } Jan Leunissen - Aurion {leunissen-at-aurion.nl} 4/28/2011 12:03 pm
} } }
I should tell you what it was, so you can smile as well:

I was in Vienna last year to do some tests. And you should know that I
am not actively involved with an institute, out of practice somewhat (in
my defense, weak... but still).
Had only worked with the Morgagni once or twice, trying to do all well
along the instructions I had received. So ... switched on HT, started up
the filament... nothing.
Checked if I had made a mistake ... no, didn't seem like that, HT was
on, we had a filament current as well as a beam current, but the TEM
chamber was dark as.

I thought: I'll be b...d if I have to ask for help, after all those
years being an electron microscopist.... And of course there is also
that feeling of looking silly.
After 10 minutes of trying, I gave up and was about to get help. Then I
turned the room lights on... and there was the reason for not getting
any beam: the cover was still on the glass pane of the viewing chamber!
I sat there laughing for a few minutes and felt so silly. Decided to
tell the friendly crew in Vienna anyway, but they still tease me with
it, it was so funny.

Well, hope that made you smile too.

Cheers

Jan

On 29/04/2011, at 6:45 AM, Tracy.Lawrence-at-inspection.gc.ca wrote:

}
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}
} Thank you all for your suggestions.  I hesitate to tell you what the
} problem was but I guess its a learning experience...the shutter was
} closed.
}
} Tracy
}
}
} Hello All,
} I am a relatively new user and only operator of our Hitachi-7100 TEM.

} I went to use the instrument for the first time in a month and was
not
} able to find the beam.  I have bright illumination but no focussed
beam.
} I have backed out the apertures and specimen holder to adjust the
Gun
} alignment to get the brightest illumination at the largest spot
size.
} There looks to be somewhat of a beam at the top of the screen but I
am
} unable to get it to the centre without losing it all together.
}
} I know this problem is well below the level of discussion on this
} ListServ so if you have any suggestions please feel free to contact
me
} off line.
}
} Thank you Tracy
}
} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
} Tracy Lawrence
} (250) 363-6650 ext 304 | Tracy.Lawrence-at-inspection.gc.ca
} Facsimile / Télécopieur :(250)363-6661
} Virology Technician, Canadian Food Inspection Agency
} Agence Canadienne d'inspection des aliments
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} Government of Canada | Gouvernement du Canada
} www.inspection.gc.ca
} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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From: nizets2-at-yahoo.com
Date: Mon, 2 May 2011 06:27:46 -0500
Subject: [Microscopy] viaWWW:Artifacts in aldehyde fixed cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Pete
Hi Yorgos,

This is a principle of science that any interaction with the specimen modifies
its nature, however we all strive to limit the modifications we introduce.
The formaldehyde/glutaraldehyde mix is used for decades now and frankly I won't
dare stand up against the huge amount of literature produced with the classical
methods and claim that they introduce systematically significant artifacts. What
you can say is that you lose some structures, that you don't see everything.
This is right (and this is confirmed by the use of cryofixation).
The facts are that formaldehyde is a fast-penetrating fixative, but its fixation
is weak and (at least partly) reversible. This is why it is often used in
association with glutaraldehyde, which is slower but stronger. Both together
generally offer a fixation of quality.
However I have a problem with the original message of Pete and specifically with
the part "artifacts...in general". There is no protocol which works "in
general". All protocols must be adapted to the specimen.

In general, with protocols well adapted for the specimen, formaldehyde fixation
does not produce membrane blebbing artifacts. However it may well be that a
general protocol is not suited for Pete's specimen. Also, generally formaldehyde
fixation is completed by an osmium post-fixation step but this was not stated.
Not knowing with which specimen Pete is working (and how) it is hard to guess
what could be wrong, but I wouldn't be surprised if it had to do with
osmoticity.

Have a nice week all. Summer just ended in Austria ;-)

Stephane





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Email: petereaton-at-hotmail.com Name: Peter Eaton

Organization: University of Porto, POrtugal

Title-Subject: [Filtered] Artifacts in aldehyde fixed cells

Message: Hi,
I remember seeing some discussion (many years ago?), on the server about
artifacts in microscopy of biological specimens in general. Specifically
I think I read about membrane blebbing caused by aldehyde-based fixing.
Does anyone have any actual references about this? I have seen what
might be this effect, but it's hard to be sure. Thanks,
Pete.

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From: PhillipsT-at-missouri.edu
Date: Mon, 2 May 2011 06:50:26 -0500
Subject: [Microscopy] Artifacts in aldehyde fixed cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

An early paper showing membrane induced artifacts resulting from aldehyde fixation: Hasty & Hay (1978) Freeze-fracture studies of the developing cell surface. II. Particle-Free Membrane Blisters on Glutaraldehyde-Fixed Corneal Fibroblasts Are Artefacts. J. Cell Biology 78:756-768.

There are other papers showing the dramatic change in morphology to mitochondria following aldehyde fixation compared to those prepared by high pressure freezing or quick-freezing using the metal mirror approach. I don't have a copy to double check but I believe that is shown in Terracio, L, Bankston, PW and McAteer, JA (1981) Ultrastructural observations on tissues processed by a quick-freezing, rapid-drying method: Comparison with conventional specimen preparation. Cryobiology 18(1):55-71

Here is a study showing aldehydes cause dramatic changes in endosomes: Murk JL, Posthuma G, Koster AJ, Geuze HJ, Verkleij AJ, Kleijmeer MJ, Humbel BM. (2003) Influence of aldehyde fixation on the morphology of endosomes and lysosomes: quantitative analysis and electron tomography. J Microsc. 212(Pt 1):81-90.



Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: eikonika-at-otenet.gr [mailto:eikonika-at-otenet.gr]
Sent: Monday, May 02, 2011 12:27 AM
To: Phillips, Thomas E.

Dear Pete

You raise a fundamental question for biology microsopists and here I would
like to remind you of another, a bit neglected, player in the process of
aldehyde cell fixation. This player is TIME: How much time it takes for the
fixative to diffuse and reach a cell within a piece of tissue. And more
importantly, how much time passes from the moment the first tiny toxic
concentration of the fixative reaches the cell until it rises to a lethal
concentration and fixes this cell. And even before that moment, for how much
time this cell was exposed to alarm signals emitted by neighbor cells in
response to their contact with the toxic fixative milieu, and transmitted to
this cell through cell to cell contacts and junctions.

If I was a cell I would be in a state of panic during these last moments of
my life, feeling the catastrophy caused by the aldehydes that destroy my
enviroment and my family and is going to kill me too. The countless cell
functions occurring in live cells may change at sub-seconds rate. For
instance flagellae and ciliae beat three times per second, pino- and
exocytosis of plasma membrane is fast, and large molecules may change within
microseconds. Membrane blebbing can happen very rapidly, perhaps in the
course of activation of apoptotic mechanisms during this deadly fight of the
cell with the aldehydes. I don't know well the physiochemical properties of
aldehydes to estimate their diffusion times in the various animal or plant
tissues, but I am sure that they don't act instantly.


X-from the diffusion point of view, epithelial and other mesothelial or
endothelial cells lining tissue cavities would get fixed faster and better,
because a large percentage of their surface is immediately exposed to the
fixative. Ideally cells in suspension can be fixed instantly and then they
can be observed under a microscope to provide a snapshot of live cells. Even
so, what we see is far away from life. For instance, if you observe motile
spermatozoa under light microscopy they look like snakes, but if you fix
them they look more like spaghetti. And if this is true for cells like sperm
that are prepared to come out of the body, what about a tissue we excise
from an animal or during surgery and then we fix it. The cells in this
tissue, deprived from their environment and blood supply, change rapidly and
every single moment passing until final fixation counts.


I think that all these parameters together with the entire post-fixation
preparation of the sample are of paramount importance when we make our
microscopic observations and interpret our findings. In this sense the word
"artifact" sounds a little bit like aphorism. We judge what images are
closer to the "real" and ideal state we have in our mind (aesthetics are
always involved) and we choose them to represent our findings. The rest of
the images we reject, and we like to condemn them as artifacts or artefacts.
In a way, we always choose something that we wish to see and we have to be
very careful at this point. Pythagoras the philosopher forbade to his pupils
to make wishes, on the grounds that they are too young and don't really know
what to wish.

My apologies for much philosophy -we Greeks are good in this- and not
providing references. I would love to hear yours and other colleagues' views
on this subject.



Have a nice day



yorgos



Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
eikonika-at-otenet.gr
www.aim.cat
***********************************


Email: petereaton-at-hotmail.com Name: Peter Eaton

Organization: University of Porto, POrtugal

Title-Subject: [Filtered] Artifacts in aldehyde fixed cells

Message: Hi,
I remember seeing some discussion (many years ago?), on the server about
artifacts in microscopy of biological specimens in general. Specifically
I think I read about membrane blebbing caused by aldehyde-based fixing.
Does anyone have any actual references about this? I have seen what
might be this effect, but it's hard to be sure. Thanks,
Pete.


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From: PhillipsT-at-missouri.edu
Date: Mon, 2 May 2011 08:49:34 -0500
Subject: [Microscopy] bone prep results

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Thanks to everyone who suggested ways to get the last bits of tissue off the scleral ossicles that I was trying to clean up.  As I mentioned, I had trimmed the aldehyde-fixed tissue off these bones and then treated for a long time in sodium hydroxide which had removed much but not all the tissue. I thought collagen was one of the main remnants. Based on suggestions from several of you, I put them in Chlorox bleach.  It certainly removed every trace of tissue. In fact, the imbricating bone plates (overlapping like roof tiles) all fell apart!  The remaining plates are very white and brittle but I don't know if their fragility comes from the prolonged sodium hydroxide or too long treatment in Chlorox. Next time I will use shorter durations of each but, as I always tell my students, that's why we call them experiments. Thanks for the suggestions - I see success just over the horizon. Tom

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/



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From: kenconverse-at-qualityimages.biz
Date: Mon, 2 May 2011 11:45:07 -0500
Subject: [Microscopy] viaWWW:SEM of particles suspended in oil

Contents Retrieved from Microscopy Listserver Archives
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Ben,
I didn't see any responses to this, so I'll give it a shot.

Basically, you've got to get rid of the oil. The beam isn't going to
penetrate it worth a darn and, unless you're using a VP or ESEM, you're
probably going to vaporize at least some of the oil and contaminate the
whole chamber.

I would suggest getting an appropriate filter for the particle size and wash
the oil away with an appropriate solvent, then put the washed (and maybe
coated) filter in the SEM.

You didn't mention what the particles are made of or their size range, so
there might possibly be some other options, but generally speaking SEMs
don't deal with suspensions very well. The liquid stops the beam.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
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Email: benj-at-duke.edu Name: Ben

Organization: Duke university / CEE dpt.

Title-Subject: [Filtered] SEM of particles suspended in oil.

Message: Hello,
I was wondering if someone had a method to visualize, with SEM, fine
particles suspended in an oil phase.
Let me know
Thanks much
Best
Ben
Login Host: 152.3.68.8
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From: Woody.White-at-areva.com
Date: Mon, 2 May 2011 13:39:27 -0500
Subject: [Microscopy] viaWWW:SEM of particles suspended in oil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ben,
An FYI about filters... In case you have not used them before, I highly
recommend "Nuclepore" type membrane filters for SEM work. You don't
have to contend with material being buried in the filter medium.
An example can be found at:
http://www.2spi.com/catalog/spec_prep/filter3.html
No interest in SPI other than a customer.

Woody


-----Original Message-----
X-from: kenconverse-at-qualityimages.biz
[mailto:kenconverse-at-qualityimages.biz]
Sent: Monday, May 02, 2011 12:52 PM
To: WHITE Norvell (RS/IB)

Ben,
I didn't see any responses to this, so I'll give it a shot.

Basically, you've got to get rid of the oil. The beam isn't going to
penetrate it worth a darn and, unless you're using a VP or ESEM, you're
probably going to vaporize at least some of the oil and contaminate the
whole chamber.

I would suggest getting an appropriate filter for the particle size and
wash the oil away with an appropriate solvent, then put the washed (and
maybe
coated) filter in the SEM.

You didn't mention what the particles are made of or their size range,
so there might possibly be some other options, but generally speaking
SEMs don't deal with suspensions very well. The liquid stops the beam.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


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Email: benj-at-duke.edu Name: Ben

Organization: Duke university / CEE dpt.

Title-Subject: [Filtered] SEM of particles suspended in oil.

Message: Hello,
I was wondering if someone had a method to visualize, with SEM, fine
particles suspended in an oil phase.
Let me know
Thanks much
Best
Ben
Login Host: 152.3.68.8
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From: allan.mitchell-at-stonebow.otago.ac.nz
Date: Mon, 2 May 2011 15:50:36 -0500
Subject: [Microscopy] Re: viaWWW:Electron microscopy on motor end plates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Both of our two SEMs are now VP-SEMs. One is a Hitachi and the other is an FEI. They are both good.

You certainly experience some loss of image resolution when operating in variable pressure mode. Some primary electrons scatter off of the residual gas, but most hit their intended target to give a good image.

As someone said, scattering can pose more of a problem with x-ray analysis. If 98% of the electrons hit their target, that means 2% still scatter. Suppose your sample is sparse particles of micron-sized chunks of pure A in a matrix of B. Those scattered electrons will mean you never find pure A. It will only ever be 98% pure with a 2% content of B. The effect will be proportional to pressure and it can be dealt with, but it will complicate analyses.

VP-SEMs can also be operated in high vacuum mode very similarly to what you are used to. However, I think you will find that the resolution lags just a little behind that of the high-vacuum SEMs. I recall that our Quanta-250 FEG was specified to have 1.2 nm resolution whereas the hivac SEM achieved a little better than 1 nm resolution. I understand that the detector choices are more limited for the VP-SEM than for the hi-vac SEM. In particular, I believe the "in-lens" detectors are not an option due to the design of a VP column. However, 1.2 nm is still pretty darn good in my opinion.

There is a bit of an extra cost for the fancier vacuum system compared to a conventional SEM with the same options. Personally, I prefer the flexibility that the VP-SEM gives and would go that way again.

Warren Straszheim
Iowa State University

________________________________________
X-from: microscopylistserver-noreply-at-microscopy.com [microscopylistserver-noreply-at-microscopy.com]
Sent: Saturday, April 30, 2011 2:52 PM
To: wesaia-at-iastate.edu

Hi Maya

I did a lot of this work many years ago. We used a copper- ferricyanide variant of the thiocholine technique (based on a Karnovsky and Roots paper 1964). Worked really well. The end plates become visible under a stereo microscope so can then be trimmed out easily for EM processing. They show up as little dark dots under the stereo microscope and in diaphragm they are really easy to find as they line up in a row across the diaphragm. Ultrastructure is fine. It was so successful we ended up doing this as a student practical for many years.

Check out chapter 4 of (including pages 223 to 228) Cytochemical Staining Methods for Electron Microscopy, PR Lewis and DP Knight, from the Audrey Glauert EM series (volume 14 I think).

My method is pre-computer but if you get stuck I can quickly type up method we used and send a copy to you.

Good luck

Allan




On 1/05/2011, at 7:57 AM, {microscopylistserver-noreply-at-microscopy.com} {microscopylistserver-noreply-at-microscopy.com} wrote:

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} We have a researcher who wants to do EM on a motor endplate of a mouse
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} Any advice would be greatly appreciated.
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} Maya Yankova, M.Sc.
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Allan Mitchell
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From: allan.mitchell-at-stonebow.otago.ac.nz
Date: Mon, 2 May 2011 16:05:39 -0500
Subject: [Microscopy] Re: viaWWW:Artifacts in aldehyde fixed cells

Contents Retrieved from Microscopy Listserver Archives
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Hi Peter

I started a report sometime ago ( but sadly never finished it) about long term storage of tissue and while doing this came across the following papers. These may help.

Shelton, E. and Mowczko, W.E (1979) Scanning electron microscopy of membrane blisters produced by glutaraldehyde fixation and stablised by postfixation in Osmium Tetroxide, in: Freeze Fracture Methods, Artifacts and Interpretations, edited by J.E. Rash and C.S. Hudson. Raven Press , pp 67 - 69 **

Hay, E.D and Hasty, D.L (1979) Extrusion of particle free membrane blisters during glutaraldehyde fixation, in: Freeze Fracture Methods, Artifacts and Interpretations, edited by J.E. Rash and C.S. Hudson. Raven Press , pp 59 - 66


Hasty, D.L and Hay, E.D ., (1978) Freeze-fracture studies of the developing cell surface. 11. Particle free membrane blisters on glutaraldehyde-fixed corneal fibroblasts are artifacts. J. Cell Biology Vol 78: pp 756 - 768

Good luck

Allan


On 1/05/2011, at 7:57 AM, {microscopylistserver-noreply-at-microscopy.com} {microscopylistserver-noreply-at-microscopy.com} wrote:

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Allan Mitchell
Microscopy Otago - Electron Microscopy
c/- Department of Anatomy and Structural Biology
Otago School of Medical Sciences
P.O. Box 913
Dunedin
New Zealand

Phone (03) 479 5642 or 479 7301
Fax (03) 479 5086 or 479 7254

EM Centre: http://ocem.otago.ac.nz/
Confocal Centre: http://occm.otago.ac.nz/
NZ Microscopy Society: http://microscopynz.co.nz/





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From: bozzola-at-siu.edu
Date: Mon, 2 May 2011 16:21:05 -0500
Subject: [Microscopy] Re: viaWWW:SEM of particles suspended in oil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

In addition to the Nucleopore filters mentioned earlier by Woody
White, you might consider using either silver or aluminum oxide
micro-filters:

http://www.2spi.com/catalog/spec_prep/silver-membrane-filtration-media.html

http://www.2spi.com/catalog/spec_prep/filter2.shtml

They do not give the more placid background of the NP filters, but
they are impervious to most (probably all) solvents. Seems like this
might be ideal to examine the particulates in oil since the particles
would remain behind on the filters and the oil could be rinsed away
with a solvent (like hexane).

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


==============================Original Headers==============================
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From: nizets2-at-yahoo.com
Date: Tue, 3 May 2011 05:38:03 -0500
Subject: [Microscopy] Re: viaWWW:SEM of particles suspended in oil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

That's right the anopore filters work really well and they are conductive as
well.
JAHU (just another happy user)

Stephane




----- Original Message ----
X-from: "bozzola-at-siu.edu" {bozzola-at-siu.edu}
To: nizets2-at-yahoo.com
Sent: Mon, May 2, 2011 11:23:53 PM

In addition to the Nucleopore filters mentioned earlier by Woody
White, you might consider using either silver or aluminum oxide
micro-filters:

http://www.2spi.com/catalog/spec_prep/silver-membrane-filtration-media.html

http://www.2spi.com/catalog/spec_prep/filter2.shtml

They do not give the more placid background of the NP filters, but
they are impervious to most (probably all) solvents. Seems like this
might be ideal to examine the particulates in oil since the particles
would remain behind on the filters and the oil could be rinsed away
with a solvent (like hexane).

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: FMonson-at-wcupa.edu
Date: Tue, 3 May 2011 11:14:40 -0500
Subject: [Microscopy] bone prep results

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Tom,

Your problem has been informative and raises some anecdotes from my long-past youth that might be, at the least, philosophically interesting in the context of the varied processes used to prepare the harder parts of anatomy from their previous residents.

Two of the following three occurred while I was a graduate student (for six happy years - almost to the hour), and the other from earlier while doing my duty, 'standing in line waiting to ____ for my country' (as we used to put the time). The third occurred during my sojourn on the rifle range at 'Pleasure Island' while undergoing the trials of marksmanship.

The First occurred while on the range and demonstrating a disappointing level of incompetence, that I mused about how much better I would 'feel' if I were equipped, as a raptor, with an eye whose spericity was supported by bony plates. My older son, his sobriquet for the identical boot camp being "the bad place", came home with an 'Expert' badge while I had achieved that which he and his other extremely qualified marksmen called a 'toilet seat'.

The second occurred while as a graduate student, I was taking care of the department timber rattlesnake. I fed the beast from our mouse colony and cleaned the cage of her/his leavings which always included perfectly cleaned mouse skulls and other parts of the skeleton. On one occasion, I was forced by circumstance to ask an undergraduate 'intern' to perform the feeding while I was away learning the initial lessons of matrimonial bliss. When I returned, all appeared to be well, and I resumed my normal intellectual and husbanding responsibilities. When it came time for the next housekeeping chores in the reptile's cage, I found the usual skeletal remains and one perfectly preserved bicornate uterus sans all signs of the pregnancy of the previous offering provided by my substitute. Thus, I earned a piece of nickel-knowledge, that has survived to this day; for, there had been, when I returned from my 'vacation', a missing pregnant female, which I had been led to believe was among a group of mice that had been found deceased. Further interrogation of the undergraduate disclosed that the mouse he had provide the snake had been 'a real fat one'. Thus, it was clear, without need for further experiments that a pregnant uterus was quite distinct from a non-pregnant one. Interestingly, the uterus was resistant of every attempt to soften it for sectioning. It appeared to have been very nicely tanned.

The third occurred during my last summer when my wife and I resided at my fraternity house. Over the course of two days, the fraternity mascot - a goat - was found dead in its pen (we HAD fed and watered it) and I was provided with the body of a feral cat which was gaunt and obviously had died as a nursing mother. I had two reasons for determining to have skeletons of both of these animals - the goat, so the fraternity would not lack for its mascot, and the cat, because I wanted to have a skeleton from a feral, and very emaciated, feline to compare with my other which was acquired from a healthy deceased animal from the local 'SPCA'. Her skeleton appeared to be from an animal with very poor nutrition. All of the bones of the body were covered with a white, chalky dust, and over the almost thirty years I had them, they never lost their dusty texture. The dermal bones of the skull were especially delicate though they never wore through. Flakes of apatite were always to be found in the box, no matter how often I cleaned it out.

Except for the factual nature of these anecdotes, they would readily be recognized as 'sea stories' by any marine.

Cheers, and that's the truth,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl

-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Monday, May 02, 2011 9:59 AM
To: Monson, Frederick


Thanks to everyone who suggested ways to get the last bits of tissue off the scleral ossicles that I was trying to clean up.  As I mentioned, I had trimmed the aldehyde-fixed tissue off these bones and then treated for a long time in sodium hydroxide which had removed much but not all the tissue. I thought collagen was one of the main remnants. Based on suggestions from several of you, I put them in Chlorox bleach.  It certainly removed every trace of tissue. In fact, the imbricating bone plates (overlapping like roof tiles) all fell apart!  The remaining plates are very white and brittle but I don't know if their fragility comes from the prolonged sodium hydroxide or too long treatment in Chlorox. Next time I will use shorter durations of each but, as I always tell my students, that's why we call them experiments. Thanks for the suggestions - I see success just over the horizon. Tom

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/



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From: stefan.diller-at-t-online.de
Date: Tue, 3 May 2011 11:52:05 -0500
Subject: [Microscopy] Re: viaWWW:SEM of particles suspended in oil

Contents Retrieved from Microscopy Listserver Archives
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Hi Ben,
I did a lot of work on soap structures in grease and that means to get rid of the oil in the structure...
See 9th image at my website: http://www.elektronenmikroskopie.info/galerie%20-%20rem-material.htm

Best (if you like to do EDS also) to use an aluminium stub, polish it down to 250nm roughness.
Add a drop of your solution of the suspended particles to the stub, dry under infrared light. It might be best to dilute the oil
in pet ether first...
Then carefully drop 40° petroleum ether from one side on the tilted stub to wash away the oil. Do this ca. 5-10 times.
Then coat as needed.
With a chromium coating I came down to a resolution of ca. 2-3 nm... :-)

Best wishes,
Stefan



-----------------------------------------------------
Stefan Diller - Wissenschaftliche Photographie
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
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Anfahrt: http://Mail.map24.com/Stefan.Diller
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Am 30.04.11 21:49, schrieb microscopylistserver-noreply-at-microscopy.com:
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} Title-Subject: [Filtered] SEM of particles suspended in oil.
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From: lkerr-at-mbl.edu
Date: Tue, 3 May 2011 14:53:49 -0500
Subject: [Microscopy] Removal of a Philips 300 TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I posted a message last week about a colleague who has a functional Philips 300 TEM. He is now looking for a outfit to remove the unit in short order. It is located at Providence College in Providence, RI.

Please contact him directly as he is not on this list.
Joseph A DeGiorgis, PhD
Biology Department
Providence College
Providence, RI 02 918-0001
jdegiorg-at-providence.edu
508-292-4605 (Cell)

Thanks,
Louie


--
Louis Kerr
lkerr-at-mbl.edu

Research and Education Support Coordinator
Marine Biological Laboratory
7 MBL Street
Woods Hole, MA 02543
508-289-7273
508-540-6902 (FAX)
508-292-0289 (Cell phone)

VISIT OUR WEB SITES:
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From: orlandi-at-iq.unesp.br
Date: Tue, 3 May 2011 15:57:40 -0500
Subject: [Microscopy] Brazilian MRS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Colleagues,
On behalf of the meeting organizers I am pleased to invite you to
attend the X Brazilian MRS Meeting
(in special Symposium M: Advances and Applications of Electron
Microscopy), which will be held in Gramado-RS-Brazil,
in September 25-29. The submission deadline is 13th, may.

More information about Symposium M can be found at:
http://www.sbpmat.org.br/10encontro/

Your attending will be very helpful to the success of the conference.
We hope see you at Brazilian MRS Conference.

Best regards,
Prof. Dr. Marcelo O. Orlandi
Symposium Organizer


---------------------------------------------------
Esta mensagem foi enviada pelo WebMail do Instituto
de Quimica de Araraquara-SP (UNESP)


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 3 May 2011 23:14:30 -0500
Subject: [Microscopy] viaWWW:EDS - Electron Beam Excitation

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
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Email: travisj25-at-gmail.com Name: Travis Johnson

Title-Subject: [Filtered] EDS - Electron Beam Excitation

Message: We are working with "Quantitative Analysis Software" (QAS) for
an EDS
detector. The software is used both for auto identification of peaks and for
quantitation. The software was apparently developed for use with an X-ray
excitation source but may be usable also for electron beam excitation. In
our case the electron beam is a cold cathode source with a nominal beam
energy of 20 kV. Because of the nature of the cold cathode electron beam
source, there is an appreciable energy spread in the exciting beam (as
contrasted with more elaborate sources on SEMs, etc.)

The samples for the most part are geological (rock thin sections and thin
slabs).

If anyone has any experience or references to work in this area, we would be
pleased to hear about them.

Thanks,
Travis Johnson

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 3 May 2011 23:15:17 -0500
Subject: [Microscopy] viaWWW:EDX

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
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Email: y.han.1-at-bham.ac.uk Name: Yisong Han

Organization: University of Birmingham

Title-Subject: [Filtered] EDX

Message: Dear All,

We planned to buy an SDD EDX for our JEOL 2100f probe corrected TEM with
UHR pole pieces. We can go with either an Oxford X-MAX or a Bruker. I am
wondering if anyone could comment on these two systems in terms of ease
of use, reliability, sensitivity, compatibility with JEOL machines, etc.
Thanks very much in advance.

Yisong

Login Host: 80.3.103.247
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==============================Original Headers==============================
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From: Woody.White-at-areva.com
Date: Wed, 4 May 2011 07:05:44 -0500
Subject: [Microscopy] RE: viaWWW:EDX

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I have been using SEMEDS for 30 years, but most of the time was spent on
(obviously) early systems. I have had the Oxford system for two years.
Having used only the X-Max SDD detector, I cannot offer a firsthand
comparison to Bruker. I can say I am quite satisfied with the X-Max
detector on my Zeiss SIGMA SEM. Sensitivity down to Boron is what one
would expect of a premium detector. Count rates are good and after some
initial (at install, fixed) problems with a spurious peak, operation has
been trouble free.

I am not quite as happy with the INCA ENERGY software. It performs very
well but it is somewhat inflexible, limiting how it is used (This is
vague, I know, but there are too many small details to describe here).
To be fair, as prefaced, it does a good job, just not the way I would
always prefer. I understand that new software is being (has been?)
released and may well address the situation. The new software is also
supposed to be Windows7/64 bit compatible.

Woody



This Question/Comment was submitted to the Microscopy Listserver using
the WWW based Form at http://www.microscopy.com/MLFormMail.html
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---

Email: y.han.1-at-bham.ac.uk Name: Yisong Han

Organization: University of Birmingham

Title-Subject: [Filtered] EDX

Message: Dear All,

We planned to buy an SDD EDX for our JEOL 2100f probe corrected TEM with
UHR pole pieces. We can go with either an Oxford X-MAX or a Bruker. I am
wondering if anyone could comment on these two systems in terms of ease
of use, reliability, sensitivity, compatibility with JEOL machines, etc.

Thanks very much in advance.

Yisong

Login Host: 80.3.103.247
------------------------------------------------------------------------
---



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From: Kahlee.Redman-at-sa.gov.au
Date: Wed, 4 May 2011 19:06:40 -0500
Subject: [Microscopy] Re: viaWWW:SEM of particles suspended in oil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,

Does anyone know why the Aluminium oxide filters are discontinued? Also is it possible to clean the Silver filters?

Thanks
Kahlee


Kahlee Redman
Senior Forensic Scientist

Note: My work days are Monday, Wednesday and Thursday. I shall respond to your request as soon as possible. If your matter requires urgent attention please contact Hayley Brown at FSSA.

Forensic Science SA
21 Divett Place, SA 5000
Phone: + 61 8 82267700
Fax: +61 8 82267777
email: kahlee.redman-at-sa.gov.au



-----Original Message-----
X-from: bozzola-at-siu.edu [mailto:bozzola-at-siu.edu]
Sent: Tuesday, 3 May 2011 6:58 AM
To: Redman, Kahlee (AGD)

In addition to the Nucleopore filters mentioned earlier by Woody
White, you might consider using either silver or aluminum oxide
micro-filters:

http://www.2spi.com/catalog/spec_prep/silver-membrane-filtration-media.html

http://www.2spi.com/catalog/spec_prep/filter2.shtml

They do not give the more placid background of the NP filters, but
they are impervious to most (probably all) solvents. Seems like this
might be ideal to examine the particulates in oil since the particles
would remain behind on the filters and the oil could be rinsed away
with a solvent (like hexane).

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


==============================Original Headers==============================
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From: dsherman-at-purdue.edu
Date: Wed, 4 May 2011 20:44:10 -0500
Subject: [Microscopy] Use of polyvinylpyrrolidone in fix

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

In doing a literature search I came across a paper recommending the use of
polyvinylpyrrolidone in glutaraldehyde fixatives to help minimize changes
due to osmotic pressure. In our case we would be using it on mouse
intestinal tissue.

J. ULTRASTRUCTORE RESEARCH 30, 195-208 (1970)
Effects on Tissue Fine Structure of Variations in Colloid
Osmotic Pressure of Glutaraldehyde Fixatives ~
SVEN-OLOF BOHMAN AND ARVID B. MAUNSBACH

We often do add sucrose to our fix for osmotic control but I have never used
PVP. I would appreciate comments from those who might have experience using
it.

Thanks in advance
Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy




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From: christian.dwyer-at-monash.edu
Date: Thu, 5 May 2011 02:13:24 -0500
Subject: [Microscopy] Postdoctoral Position Available - Aberration-Corrected STEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Research Fellow – Electron Microscopy (fixed term)

Job No: 495814
Location: Department of Materials Engineering, Monash University,
(Clayton campus, Melbourne, Australia)
Salary: The appointment level will depend upon qualifications and
experience:
$74,032 - $79,469 Level A (includes 9% superannuation)
$83,651 - $99,337 Level B (includes 9% superannuation)
Duration: Up to three years fixed-term appointment.

The Department of Materials Engineering at Monash University, in
Melbourne, is seeking to appoint an outstanding Research Fellow with
expertise in the area of aberration-corrected transmission electron
microscopy. The Research Fellow will conduct high-level research in
theoretical and/or experimental aspects of aberration-corrected STEM
EELS and associated techniques in relation to the research project
"Chemical mapping of materials at the atomic scale". The Fellow will
work closely with the research team and instruments at the Monash
Centre for Electron Microscopy. The Centre has a world-class suite
of instrumentation, including a double-aberration-corrected Titan3
80-300kV FEG-TEM.

The successful applicant will have advanced understanding and skills in
the theory and application of TEM and a PhD or equivalent qualification
and will possess sound interpersonal skills, along with excellent
written and oral communication skills.

Full details and instructions on how to apply can be found at:
http://jobs.monash.edu.au/jobDetails.asp?sJobIDs=495814

Enquiries can be made to:
Associate Professor Joanne Etheridge, Monash Centre for Electron
Microscopy, Department of Materials Engineering on,
Tel.: +61 (0) 3 9905 1836
Fax: +61 (0) 3 9905 3600
Email: joanne.etheridge-at-monash.edu





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From: george.theodossiou-at-st-annes.ox.ac.uk
Date: Thu, 5 May 2011 08:53:32 -0500
Subject: [Microscopy] Gatan PEELS 666 - Parts

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings All,

If anyone has an old Gatan PEELS 666 they don't want anymore or it has ceased to function.
I would like the rear aluminium assembly that supports the detector (post phosphor) and also supplies the cooling water.
Detector and electronics don't need to work. I just want the aluminium fitting to modify.
I'm happy to pay for shipping.

I have images of the part in question, please contact me offline and I can send them through so we are comparing apples with apples.

Thank you in advance

Regards
George

==============================Original Headers==============================
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From: mcauliff-at-umdnj.edu
Date: Thu, 5 May 2011 10:08:47 -0500
Subject: [Microscopy] Re: Use of polyvinylpyrrolidone in fix

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Debbie:

I used PVP many, many years ago when I was doing TEM on the renal
medulla, very hypertonic down there.
How much the PVP helped versus how much adding lots of NaCl to the fix
to make it hypertonic helped is open to question.
I got the recipe from Bohman's work on the kidney which had very nice
EMs. J. Ultrastruc. Res. 47:329-360, 1974.
I actually met him some years later, nice guy and a good scientist.
I have also done TEM of mouse duodenum and never had a problem getting
good fixation with 2.5% glut in buffer. I think I used 0.08M cacodylate
in those days but probably phosphate as well.
I did not perfuse but just flushed the lumen with fix from a small
syringe with a 25g needle.
Final answer, it is probably not necessary but there is enough small
intestine in a mouse to try adjacent pieces of tissue in fix with and
without PVP.

Geoff

On 5/4/2011 9:44 PM, dsherman-at-purdue.edu wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi all,
}
} In doing a literature search I came across a paper recommending the use of
} polyvinylpyrrolidone in glutaraldehyde fixatives to help minimize changes
} due to osmotic pressure. In our case we would be using it on mouse
} intestinal tissue.
}
} J. ULTRASTRUCTORE RESEARCH 30, 195-208 (1970)
} Effects on Tissue Fine Structure of Variations in Colloid
} Osmotic Pressure of Glutaraldehyde Fixatives ~
} SVEN-OLOF BOHMAN AND ARVID B. MAUNSBACH
}
} We often do add sucrose to our fix for osmotic control but I have never used
} PVP. I would appreciate comments from those who might have experience using
} it.
}
} Thanks in advance
} Debby
}
} ---
} Debby Sherman, Director Phone: 765-494-6666
} Life Science Microscopy Facility FAX: 765-494-5896
} Purdue University E-mail: dsherman-at-purdue.edu
} S-052 Whistler Building
} 170 S. University Street
} West Lafayette, IN 47907
} http://www.ag.purdue.edu/facilities/microscopy
}
}
}
}
} ==============================Original Headers==============================
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} 9, 28 -- To: "message to: MSA list" {microscopy-at-microscopy.com}
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--
--
**********************************************
Geoff McAuliffe, Ph.D.
Neuroscience and Cell Biology
Robert Wood Johnson Medical School
675 Hoes Lane, Piscataway, NJ 08854
voice: (732)-235-4583
mcauliff-at-umdnj.edu
**********************************************



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From: jkrupp-at-deltacollege.edu
Date: Thu, 5 May 2011 11:13:36 -0500
Subject: [Microscopy] Resin shelf life

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings

I think I may have asked this before. What are your ideas about the shelf life of embedding resins?

We have a bunch, some very old (a few back to 1983), and I don't know what to do with them. Are they good to use or should they just go?

I know I could mix up test sets, but I'm not sure I can spare the time. Plus some of the things on the shelf I have never used.

Some are old & open, some old and never opened. All kinds of things, DMAE, DMP-30, BDMA, Spurr's components, Epon 812 substitutes, some Araldites, DBP, NMA, DDSA, Quetol, Maraglas, and Cardolite, LR White, the list goes on. All have been stored at RT in a glass doored cabinet in the lab, most are in brown glass bottles.

I'm ready to purge the lab of old, unused things, but don't want to discard anything that would be useful for the future. Happy to share a complete list and give away what we don't need.


Jon


Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: dcromey-at-email.arizona.edu
Date: Thu, 5 May 2011 11:41:44 -0500
Subject: [Microscopy] Resin shelf life

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jon,

If you decide to discard some or all of them, let me tell you a story:

Roughly 20 years ago I worked in the clinical EM lab for our teaching hospital. As the budget got tight, my junior coworker cross-trained with the risk management people to give him some job security. One day he was helping the risk management people to clean out the "boom room", a negative pressure, continuous air-flow room where volatile solvents were stored. In a corner of this room were a number of bottles of EM resins (mostly LX-112 and Spurrs components). Now my coworker knew that the resins were hazardous, but he reasoned that they were less hazardous once they had polymerized. So, with good intentions, he mixed everything together in a 1 gal brown glass bottle.

Unfortunately, polymerization is an exothermic reaction and the mixture soon got hot and started to bubble. They quickly put the bottle in a secondary container (bucket) in case it overflowed. One problem, the hospital loading dock (where the boom room was located) was also the location for the air intake for several floors of the building [bad design choice]. If you have ever worked with DMP-30, it smells strongly like the inside of a bicycle tire. Pretty soon there were calls coming in that people in the building were getting nauseous, so they moved my coworker and his bubbling mess across the street. One small problem, he somehow managed to stand in the area where the air intake for that building was and again people started calling in complaining about the smell.

2-3hrs later they got everything under control and my coworker showed up back in the lab reeking of DMP-30. We sent him home and strongly encouraged him to take a shower and wash his clothes immediately.

In summary, I don't know the answer to your question (although if any of the components are hygroscopic, they would be suspect), but I encourage you to be careful in how you dispose of what you don't plan on keeping.

Doug

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Douglas W. Cromey, M.S. - Assistant Scientific Investigator
Dept. of Cellular & Molecular Medicine, University of Arizona
1501 N. Campbell Ave, Tucson, AZ 85724-5044 USA

office: AHSC 4212 email: Cromey-at-Arizona.edu
voice: 520-626-2824 fax: 520-626-2097

http://swehsc.pharmacy.arizona.edu/exppath/
Home of: "Microscopy and Imaging Resources on the WWW"

-----Original Message-----
X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
Sent: Thursday, May 05, 2011 9:14 AM
To: Cromey, Douglas W - (dcromey)

Greetings

I think I may have asked this before. What are your ideas about the shelf life of embedding resins?

We have a bunch, some very old (a few back to 1983), and I don't know what to do with them. Are they good to use or should they just go?

I know I could mix up test sets, but I'm not sure I can spare the time. Plus some of the things on the shelf I have never used.

Some are old & open, some old and never opened. All kinds of things, DMAE, DMP-30, BDMA, Spurr's components, Epon 812 substitutes, some Araldites, DBP, NMA, DDSA, Quetol, Maraglas, and Cardolite, LR White, the list goes on. All have been stored at RT in a glass doored cabinet in the lab, most are in brown glass bottles.

I'm ready to purge the lab of old, unused things, but don't want to discard anything that would be useful for the future. Happy to share a complete list and give away what we don't need.


Jon


Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: germpore-at-sonic.net
Date: Thu, 5 May 2011 11:59:48 -0500
Subject: [Microscopy] Permount shelf life

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

In a slightly peripheral but related question, I was wondering about
the shelf life of Permount. We have a very old bottle in our lab, and
it's been opened some time in the past. We rarely do alcohol/xylene
series embedding, in fact, never have during the time I've been there.
But if we were to, would an old bottle of Permount still be usable, or
would the xylene base evaporated off too greatly to be usable?

Peter

On May 5, 2011, at 9:22 AM, jkrupp-at-deltacollege.edu wrote:

} Greetings
}
} I think I may have asked this before. What are your ideas about the
} shelf life of embedding resins?



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From: jds451-at-psu.edu
Date: Thu, 5 May 2011 12:47:57 -0500
Subject: [Microscopy] Thanks for Bakelite in UHV responses

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thank You to those who responded to my question about putting Bakelite
mounts into a UHV chamber.  Your comments were very helpful.  I think the
mounts would have been fine, but they were too big to fit into our chamber,
so the samples had to be extricated from the mounts.  Hammer + Undergraduate
= Success.
- Jen


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From: connellyps-at-nhlbi.nih.gov
Date: Thu, 5 May 2011 13:01:46 -0500
Subject: [Microscopy] Re: Permount shelf life

Contents Retrieved from Microscopy Listserver Archives
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Peter,

Having attempted to use an old bottle of Permount, I'd suggest that you dispose of it now and get a new bottle when the time comes to coverslip again.

IF you can get the cap off you'd be lucky and the fluid is most likely at least partially dehydrated and thick to the point that it will not flow properly under the coverslip.

Pat
Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.


________________________________
X-from: {germpore-at-sonic.net}

In a slightly peripheral but related question, I was wondering about
the shelf life of Permount. We have a very old bottle in our lab, and
it's been opened some time in the past. We rarely do alcohol/xylene
series embedding, in fact, never have during the time I've been there.
But if we were to, would an old bottle of Permount still be usable, or
would the xylene base evaporated off too greatly to be usable?

Peter


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From: connellyps-at-nhlbi.nih.gov
Date: Thu, 5 May 2011 13:13:52 -0500
Subject: [Microscopy] Re: Resin shelf life

Contents Retrieved from Microscopy Listserver Archives
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John,

The DMP-30 has a very short shelf life and the LR White should have been in the refrigerator. Any old open bottles of NMA and DDSA and anything else that is supposed to be anhydrous need to be discarded. Unopened bottles of Epon 812 substitutes should be fine for years.

My best suggestion would be to make a list with the lot numbers and send it to the suppliers and ask their opinions. Saving all the things in the world is not worth a failed embedding of an important experiment.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.


________________________________
X-from: {jkrupp-at-deltacollege.edu}

Greetings

I think I may have asked this before. What are your ideas about the shelf life of embedding resins?

We have a bunch, some very old (a few back to 1983), and I don't know what to do with them. Are they good to use or should they just go?

I know I could mix up test sets, but I'm not sure I can spare the time. Plus some of the things on the shelf I have never used.

Some are old & open, some old and never opened. All kinds of things, DMAE, DMP-30, BDMA, Spurr's components, Epon 812 substitutes, some Araldites, DBP, NMA, DDSA, Quetol, Maraglas, and Cardolite, LR White, the list goes on. All have been stored at RT in a glass doored cabinet in the lab, most are in brown glass bottles.

I'm ready to purge the lab of old, unused things, but don't want to discard anything that would be useful for the future. Happy to share a complete list and give away what we don't need.


Jon


Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu




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From: FMonson-at-wcupa.edu
Date: Thu, 5 May 2011 15:24:28 -0500
Subject: [Microscopy] Permount shelf life

Contents Retrieved from Microscopy Listserver Archives
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If memory serves, toluene is the normal Permount solvent - which is not to be used lightly to mount coverslips on xylene soaked sections. Specifically, I have almost Canada Balsam (Leitz, circa 1916) that is very viscous but still crystal clear. I would never throw such material away, nor would I fail to donate the near liter of Dammar in Xylene that I prepared almost 25 years ago. These latter materials are too precious to merely discard. Thus, for any who are seriously interested, please ask, and ye shall receive a fair aliquot, at least of the latter.

Permount? I never used the stuff, but then, I never did histology in bulk. My max was ~400 specimens for each of about 5 years during the middle 1990's, and all sections were covered manually, including those on the 2 x 3" slides. Ehrlichs Acid Hematoxylin, Gomori's Aldehyde Fuchsin (striking magenta for elastin), and Eosin (HG&E). Boy, how I loved the solitude during that part of my career/life! It was just me, my Leitz, and hundreds of slides. [Very, very strange, I admit!] Now, when I look into the binoculars and turn on the illuminator, I get to see a section with 10's of floaters in the foreground.

Finally, like other mountants, for as many times that I have seen a bottle of Permount on a shelf over the years (half empty), the fluid appears to be clear and of useful viscosity. Again, however, I have never been tempted.

Cheers,

Fred Monson

P.S. I also have histologic museum pieces:
An unused, Fisher, "Tissuemat Knife" (paraffin knife), 120VAC, with original standard cord, instructions and almost complete box. AND
A home-made but carefully designed and machined (anonymous) razor blade holder (4.75") for paraffin sectioning with big wing nuts to snug the blade clamp - 1" section width limit.

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl

If one looks long enough, one may actually see something frozen in time that flashes one's mind to a new state.
1. The day that I asked myself how the hydrogen atom's mass could actually be: 1.0008.
2. The day, while looking at a slide of some tissue, I saw a leukocyte that had been caught sneaking in or out of a capillary: http://www.annualreviews.org/doi/abs/10.1146/annurev-pathol-011110-130224


-----Original Message-----
X-from: germpore-at-sonic.net [mailto:germpore-at-sonic.net]
Sent: Thursday, May 05, 2011 1:07 PM
To: Monson, Frederick

In a slightly peripheral but related question, I was wondering about
the shelf life of Permount. We have a very old bottle in our lab, and
it's been opened some time in the past. We rarely do alcohol/xylene
series embedding, in fact, never have during the time I've been there.
But if we were to, would an old bottle of Permount still be usable, or
would the xylene base evaporated off too greatly to be usable?

Peter

On May 5, 2011, at 9:22 AM, jkrupp-at-deltacollege.edu wrote:

} Greetings
}
} I think I may have asked this before. What are your ideas about the
} shelf life of embedding resins?



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 5 May 2011 18:36:20 -0500
Subject: [Microscopy] viaWWW:Stigmation Issue

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Email: cvierret-at-mst.edu Name: Clarissa Wisner

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Title-Subject: [Filtered] Stigmation Issue

Message: We have a Hitachi S4700. Last year it started to have
stigmation issues. The left stigmation would peg out and we were not
able to focus past 5000x. This was on every sample, in fact magnetic
samples tend to do a bit better with stigmation. The problem gets worse
the longer we use the scope. Todate the service persons have rebuilt
the column, installed a new source, replace the objective lens (or the
bottom unit if you don't want to consider it an objective lens). We are
waiting on the bottom cover of the pole piece, this might take some time
considering it will be coming from Japan. I was wondering if anybody
else has had this issue and if so was it every corrected.

Thanking you for your replies in advance,

Clarissa Wisner
Electron Microscope Specialist
MS&T

Login Host: 131.151.110.252
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From: kenconverse-at-qualityimages.biz
Date: Thu, 5 May 2011 19:03:28 -0500
Subject: [Microscopy] viaWWW:Stigmation Issue

Contents Retrieved from Microscopy Listserver Archives
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Clarissa,
You didn't mention whether or not the engineers have looked at the signal
going to the stigmator coils. If they haven't, have them do that. In my
experience on other brands if there is noise on the signal at under 500kHz
with an amplitude over about 10mV, you can have uncorrectable astigmatism.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


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Email: cvierret-at-mst.edu Name: Clarissa Wisner

Organization: MS&T

Title-Subject: [Filtered] Stigmation Issue

Message: We have a Hitachi S4700. Last year it started to have
stigmation issues. The left stigmation would peg out and we were not
able to focus past 5000x. This was on every sample, in fact magnetic
samples tend to do a bit better with stigmation. The problem gets worse
the longer we use the scope. Todate the service persons have rebuilt
the column, installed a new source, replace the objective lens (or the
bottom unit if you don't want to consider it an objective lens). We are
waiting on the bottom cover of the pole piece, this might take some time
considering it will be coming from Japan. I was wondering if anybody
else has had this issue and if so was it every corrected.

Thanking you for your replies in advance,

Clarissa Wisner
Electron Microscope Specialist
MS&T

Login Host: 131.151.110.252
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From: zackg-at-berkeley.edu
Date: Fri, 6 May 2011 02:43:02 -0500
Subject: [Microscopy] Re: viaWWW:EDX

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Yisong,

We recently went through a similar purchasing decision for SEM where we did some detailed tests on EDS systems. The first thing to note, is they were all good. I'm not aware of any bad EDS systems. However, Oxford's X-Max pleasantly surprised me. I will describe one of the tests that you may find useful:

I gave them a chromite microprobe standard that was embedded in epoxy and microtomed so the surface was macroscopically flat, but not polished (roughness on the micron scale). Of course, I did not tell them it was chromite. I then asked for a standardless quant. All elements were identified by auto-ID except silicon (microprobe reported abundance of Si at 0.005 Wt%). The successful auto-ID included V (microprobe=0.122 Wt%) despite the fact that the V peak was interfering with Ti Kb. It also successfully found Mn (microprobe=0.225 Wt%) despite the fact that Mn Ka was buried under a massive Cr Kb peak (microprobe Cr = 31.905 Wt%!!!)

The accuracy (remember this is standardless) was:

Element: Microprobe, X-max (All Wt%'s)

O: 33.042, 32.571
Mg: 6.290, 6.983
Al: 7.690, 8.171
Si: 0.005, ND
Ti: 0.300, 0.319
V: 0.122, 0.4
Cr: 31.905, 31.778
Mn: 0.225, 0.4
Fe: 20.692, 19.916

That was at 100,000 cps, on an unpolished surface! I was present the entire time. The whole operation was done in a few minutes -- the average of several spectra. The only catch is that they didn't catch the V or Mn at first because they were doing 10 second spectra. (I suppose they were trying to impress me with their speed?) I told them to sit on it for longer until it had enough counts and the auto-ID found the V and Mn. That was the only "hint" I gave them.

Having used mostly their older detectors Si(Li) on TEM and SEM, I find they are obviously not as good as the new ones, but still very reliable. I will often use an inferior e-beam instrument because it has the Oxford detector when I'm doing EDS because the results come out so nice.

I also share some disappointment with the Inca software -- it doesn't let you get under the hood of the computations. It also has some unpleasant quirks. For example, trying to do standards based quant in a TEM can be fussy because you only have one set of k-factors. I see the logic in this, but in a multiuser environment, that's not always a good thing.

I have found the hardware to be robust. One EDS I know of is poorly treated by grad students (room temp, cryogenic, room temp, cryo...) It still works....

I hope this helps and I didn't rattle your ears off.

Zack Gainsforth
Space Sciences Laboratory, UC Berkeley
7 Gauss Way
Berkeley, CA 94720
510-642-9733
zackg-at-ssl.berkeley.edu




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Email: y.han.1-at-bham.ac.uk Name: Yisong Han

Organization: University of Birmingham

Title-Subject: [Filtered] EDX

Message: Dear All,

We planned to buy an SDD EDX for our JEOL 2100f probe corrected TEM with
UHR pole pieces. We can go with either an Oxford X-MAX or a Bruker. I am
wondering if anyone could comment on these two systems in terms of ease
of use, reliability, sensitivity, compatibility with JEOL machines, etc.
Thanks very much in advance.

Yisong

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From: john.robson-at-boehringer-ingelheim.com
Date: Fri, 6 May 2011 08:18:44 -0500
Subject: [Microscopy] viaWWW:Stigmation Issue

Contents Retrieved from Microscopy Listserver Archives
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Hi Clarissa,

I've never experienced this problem on my SEM and don't recall ever seeing
any posts associating it with Hitachi SEM's. I've used an S-4700 for the
past 9 years so I pay pretty close attention to posts associated with
Hitachi. I recently had a stigmation issue with mine but it was related to
sample material migrating to the Bse detector. A quick cleaning and we were
back on line.

John A. Robson
Research Scientist
Boehringer Ingelheim Pharmaceuticals, Inc.
(203)798-5640

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Email: cvierret-at-mst.edu Name: Clarissa Wisner

Organization: MS&T

Title-Subject: [Filtered] Stigmation Issue

Message: We have a Hitachi S4700. Last year it started to have
stigmation issues. The left stigmation would peg out and we were not
able to focus past 5000x. This was on every sample, in fact magnetic
samples tend to do a bit better with stigmation. The problem gets worse
the longer we use the scope. Todate the service persons have rebuilt
the column, installed a new source, replace the objective lens (or the
bottom unit if you don't want to consider it an objective lens). We are
waiting on the bottom cover of the pole piece, this might take some time
considering it will be coming from Japan. I was wondering if anybody
else has had this issue and if so was it every corrected.

Thanking you for your replies in advance,

Clarissa Wisner
Electron Microscope Specialist
MS&T

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From: Fengxia.Liang-at-med.nyu.edu
Date: Fri, 6 May 2011 09:06:44 -0500
Subject: [Microscopy] Electron microscopy technician position available at NYULMC

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Microscopy Core, at Office of Collaborative Science of New York University
Langone Medical Center, provides state-of-the-art imaging and visualization
resources for the School of Medicine and local scientific community.
Currently, we¹re seeking a full time research technician with expertise in
current techniques for electron microscopy.

In this position you will coordinate operations of electron microscopes in
the Microscopy core, assist with sample preparation, proficiency in cutting
ultrathin sections and train users in microscope. Computer skills and
research experience are a plus. The ideal applicant will have basic
knowledge of transmission electron microscope, a BS/MS in biology or a
related scientific field with 2-5 years¹ electron microscopy experience. The
individual should be capable of multitasking and should enjoy working with
other people. Good communication skills are essential. Qualified applicants
should send a curriculum vitae and names of three references to Alice Liang
(Fengxia.Liang-at-med.nyu.edu). Salary is commensurate with experience. The
position is currently open and applications will be reviewed continuously
until the position is filled.
(http://cores.webdev.med.nyu.edu/list-cores/microscopy-imaging)


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From: frank.macaluso-at-einstein.yu.edu
Date: Mon, 9 May 2011 14:56:44 -0500
Subject: [Microscopy] Open Technician Position Biological EM

Contents Retrieved from Microscopy Listserver Archives
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The Analytical Imaging Facility of the Albert Einstein College of Medicine has an opening for a research technician with skills in biological electron microscopy.

Description of the facility can be found here:
http://www.einstein.yu.edu/aif/page.aspx

Details regarding the position are here:
https://einsteincareers-yeshiva.icims.com/jobs/1460/job


Frank Macaluso
Administrative Director and
Director of Electron Microscopy
Analytical Imaging Facility
Albert Einstein College of Medicine
1300 Morris Park Avenue
Bronx, NY 10461

frank.macaluso-at-einstein.yu.edu
http://www.einstein.yu.edu/aif









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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 10 May 2011 07:27:17 -0500
Subject: [Microscopy] viaWWW:Clamshell Cu TEM grids

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Title-Subject: [Filtered] Clamshell Cu TEM grids

Message: Who sells Cu clamshell TEM grids?
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From: connellyps-at-nhlbi.nih.gov
Date: Tue, 10 May 2011 09:35:48 -0500
Subject: [Microscopy] Re: via WWW:Clamshell Cu TEM grids

Contents Retrieved from Microscopy Listserver Archives
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Marissa,

All the EM Suppliers have these grids available so if you already have a favorite supplier check their web catalogue. The name may not be "Clam Shell Grids" but "Double Folding Grids" depending on the supplier.

If you do not have a current supplier just Google "Electron Microscopy Supplies" and many companies will be listed with their web sites. After choosing a company put the name (above) into the search box and you should have your answer. I have checked two catalogues that I have in my lab for the name of the grids for I have not bought any for quite some time.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.

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Title-Subject: [Filtered] Clamshell Cu TEM grids

Message: Who sells Cu clamshell TEM grids?
Login Host: 198.128.31.46


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From: Fengxia.Liang-at-med.nyu.edu
Date: Tue, 10 May 2011 10:35:22 -0500
Subject: [Microscopy] Electron microscopy technician position available at NYULMC

Contents Retrieved from Microscopy Listserver Archives
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Microscopy Core, at Office of Collaborative Science of New York University
Langone Medical Center, provides state-of-the-art imaging and visualization
resources for the School of Medicine and local scientific community.
Currently, we¹re seeking a full time research technician with expertise in
current techniques for electron microscopy.

In this position you will coordinate operations of electron microscopes in
the Microscopy core, assist with sample preparation, proficiency in cutting
ultrathin sections and train users in microscope. Computer skills and
research experience are a plus. The ideal applicant will have basic
knowledge of transmission electron microscope, a BS/MS in biology with 2-5
years¹ electron microscopy experience, or associated degree in Electron
Microscopy with basic biology knowledge. The individual should be capable of
multitasking and should enjoy working with other people. Good communication
skills are essential. Qualified applicants should send a curriculum vitae
and names of three references to Alice Liang (Fengxia.Liang-at-med.nyu.edu).
Salary is commensurate with experience. The position is currently open and
applications will be reviewed continuously until the position is filled.
(http://cores.webdev.med.nyu.edu/list-cores/microscopy-imaging)


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From: RHBerg-at-danforthcenter.org
Date: April 26, 2011 9:56:39 PM CDT
Subject: [Junk released by Policy action] [Microscopy] Re: Osmium, freeze substitution, and immonogenicity

Contents Retrieved from Microscopy Listserver Archives
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Ann,

I would avoid osmium as it likely would oxidize your antigen. We high pressure freeze arabidopsis anthers dissected out of the flowers (can freeze 6-10 per planchette) and sub them with the top hat removed. Preventing extraction of lipids is a challenge but you might be able to do this by warming only to minus 50 C after freeze substitution, and embedding in something like Lowicryl HM20 at this temperature. I have had success in immunoreactivity using this approach and subbing only in acetone.

Hope this helps!
Howard

Begin forwarded message:

X-from: "rosemary.white-at-csiro.au {mailto:rosemary.white-at-csiro.au} " {rosemary.white-at-csiro.au {mailto:rosemary.white-at-csiro.au} }

Dear Ann,

For general advice on preserving lipids for TEM, the expert is Lacey Samuels
at UBC, Vancouver. She's also done quite a bit of immuno-EM.

Or your colleague could look up:

Mamun EA, Cantrill LC, Overall RL, Sutton BG 2005 Cellular organisation in
meiotic and early post-meiotic rice anthers. Cell Biology International 29:
903-913

or here's an unpublished protocol from a thesis - really spectacular images
of pollen at various stages of development in rice anthers:

The cryofixation protocol for immunolabelling was modified from
Paxson-Sowders et al. (2001). Anthers at the required stages were cut and
placed in specimen holders pre-coated with 7.5% (w/v) lecithin in chloroform
and filled with 0.2M sucrose. Then samples were frozen in a Leica EM PACT
Freezer (Leica, Germany). Following freezing, samples were
freeze-substituted in 3% paraformaldehyde and 0.5% uranyl acetate in
anhydrous acetone at -90ºC for 60 hours, -60ºC for 12 hours, -30ºC for 6
hours and then brought up to 20ºC with a temperature increase rate of +5ºC
per hour in a Leica EM AFS (automatic freeze substitution) machine (Leica,
Germany). Following this the anthers were rinsed 3 times in anhydrous
acetone and infiltrated in a graded acetone/LR gold acrylic resin mixture
and 100% LR gold resin for 5 days with two changes of fresh resin per day
and polymerised under UV at -20ºC in the Leica EM AFS for 24 hours.

Immunolabelling techniques were modified from methods for indirect
immunogold labelling of ultra-thin sections for TEM (Cole, 1996) and
immunofluorescence labelling (Harper et al., 1996). One micrometer sections
of LR-Gold embedded blocks were placed on poly-L-lysine coated slides and
were blocked with 200 μl per sample of blocking buffer containing phosphate
buffered saline (PBS) (0.8% NaCl, 0.02% KCl, 0.115% Na2HPO4, KH2PO4 and
0.02% NaN3, pH6.9) and 1% BSA at room temperature for 1 hour. Then the
sections were incubated in a 1:100 solution of primary antibodies for
callose and callose synthase in blocking buffer at 4ºC overnight at a rate
of 20μl per sample. Sections were washed 3 times with PBS for 5 minutes
each, followed by incubation of secondary antibody (1:50 dilution with the
same blocking buffer) at 37 ºC for 3 hours. Sections were washed again 3
times with PBS for 5 minutes each, followed by background staining with
propidium iodide (10μg/ml) in PBS for 10 minutes. Sections were washed twice
with deionized water for 5 minutes each and then mounted in anti-fade
solution, Citifluor (Citifluor, London, UK). Slides were covered and sealed
with nail polish, and then allowed to air-dry for 10 minutes.
Immunogold-labelling techniques at the electron microscopy level were
modified based on indirect immunogold labelling of ultra-thin sections for
TEM (Cole, 1996). Ultra-thin sections from LR gold blocks were placed on
pioloform film coated nickel grids (100 hexagonal mesh) and were blocked in
30 μl/grid of blocking buffer containing phosphate buffered saline plus
Tween 20 (PBST) (0.8 % NaCl, 0.02% KCl, 0.115% Na2HPO4, KH2PO4, 0.02% NaN3
and 0.5% Tween 20, pH6.9) and 1% BSA at room temperature for 1 hour. Then
the sections were incubated in 20μl/grid of 1:100 primary antibodies for
callose and callose synthase and 1:400 for β-1,3-glucanase in the blocking
buffer at room temperature for 2 hours. Sections were washed with PBST 3
times for 5 minutes each, followed by incubation with secondary antibody
(1:30 dilution with the blocking buffer) at room temperature for 1 hour.
Sections were washed again 3 times with PBST and then with distilled water
twice all for 5 minutes each, followed by background staining with saturated
uranyl acetate (in 50% ethanol) and Reynold’s lead citrate for 10 minutes
each. The sections were rinsed twice with distilled water for 1 minute after
staining.

cheers,
Rosemary White

On 19/04/11 4:31 AM, "Ann-Fook.Yang-at-AGR.GC.CA {mailto:Ann-Fook.Yang-at-AGR.GC.CA} " {Ann-Fook.Yang-at-AGR.GC.CA {mailto:Ann-Fook.Yang-at-AGR.GC.CA} }
wrote:




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Ann Fook

Ann-Fook Yang,
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============================================================================


Hello all,



New subscriber, first-time poster.



We are using high-pressure freezing along with freeze substitution to try
preserving the structure of Arabidopsis pollen. One of the challenges is
preserving the pollen kitt (tryphine) on the surface of the pollen which
mostly comprises of lipids and sterol-esters. We have attempted to use just
paraformaldehyde (2%) and glutaraldehyde (0.2%) in the freeze substitution
fixative in the hopes that the proteinaceous components of the pollen kitt
would be sufficiently fixed to retain its structure after embedding but this
has clearly shown to not be the case.



Our final option would be to try varying concentrations of osmium (which is
known to fix lipid components) but we are very concerned about loss of
immunogenicity (which we will require from the protocol).



Does anyone have any experience with the use of osmium in low temperature
freeze substitution protocols where immunogenicity is adequately preserved?
We would like some feedback from the community concerning the range of
concentrations that we could try as well as the compatibility of osmium with
other fixatives (paraformaldehyde, glutaraldehyde). The last point is
expecially important because one of our samples is whole anther and the last
thing we need is black osmium metal ppt in an enclosed space.



Thank you kindly for any suggestions,




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From: mary.raven-at-lifesci.ucsb.edu
Date: Tue, 10 May 2011 16:13:26 -0500
Subject: [Microscopy] LM - Registration is now open for the Advanced Digital Imaging

Contents Retrieved from Microscopy Listserver Archives
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Registration is now open for the Advanced Digital Imaging Workshop
scheduled for June 20-23, 2011. Space is limited and the workshop may
fill prior to registration closing. This workshop is appropriate for
graduate students, research staff, post-docs and interested senior
researchers. The Microscopy Facility operated by the Neuroscience
Research Institute (NRI) and the Department of Molecular, Cellular, and
Developmental Biology at UC Santa Barbara, offers this workshop to
provide intensive training with light microscopy. This workshop includes
three and a half days of seminars and hands on instruction. Through the
course, participants will gain theoretical and practical experience with
light microscopy. Lectures will focus on microscopy principals and
applications while laboratories will focus on collecting quality images
and data for research. Fixed biological sample will be used in this
course although many topics will be relevant for non-biological samples
and live cell imaging. This seminar serves as an excellent foundation
for our live cell imaging workshop.

For more information and to register see
https://www.lifesci.ucsb.edu/mcdb/events/imaging_workshop/

--
Mary Raven
Microscopy Facility Director
Neuroscience Research Institute&
Molecular, Cellular& Developmental Biology
Biology 2 Building, room 5173
The University of California
Santa Barbara, CA 93106-5060

https://ucsb-microscopy.ucsd.edu/schedule/
http://www.lifesci.ucsb.edu/mcdb/research/facilities/microscopy/microscopy.html
Phone: (805) 893 8702
Fax: (805) 893 2005



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 11 May 2011 07:12:52 -0500
Subject: [Microscopy] viaWWW:Quality of HMDS

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Email: edith.stabentheiner-at-uni-graz.at Name: Edith Stabentheiner

Organization: University of Graz

Title-Subject: [Filtered] Quality of HMDS

Message: Dear colleagues

I wanted to test HMDS (hexamethyldisilazane) as an alternative to CPD
for SEM of plant material and insects. 100 % HMDS was not available and
we got only 98% (greater or equal). Nonetheless, I prepared a sample and
everything seemed to be fine. Drying was ok and there was no problem
with the vacuum. However, I observed a slight discolouration of the gold
target during sputter coating - the non sputtered gold surface turned
greyish. Do you have experienced a similar phenomen and can you explain
it to me? Is it a consequence of bad drying and/or the wrong quality of
HMDS?
Thank you for your help!

Edith Stabentheiner
Graz, Austria


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 11 May 2011 07:13:15 -0500
Subject: [Microscopy] viaWWW:How to fix the fluoreschence microspheres to the coverslip

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Email: mike.net.mo-at-gmail.com Name: Xiaoming Fan

Organization: Forschungszentrum Jülich

Title-Subject: [Filtered] How to fix the fluoreschence microspheres to
the coverslip

Message: We want to use the 200nm fluospheres microspheres to fix it on
the surface of the coverslip as a reference for measurement, but we have
a problem that micrspheres just flow in the solutions which is on the
surface of the coverslip, we don't know whether there is a method to fix
the microspheres and meanwhile not influence the fluorescence character
of the microspheres, our microspheres are from Invitrogen, and the
product No is: (F8811) Fluospheres carboxylate-modified microspheres,
200 nm, yellow/green fluorescent (505/515). Thanks very much!

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From: David.Patton-at-uwe.ac.uk
Date: Wed, 11 May 2011 07:29:28 -0500
Subject: [Microscopy] viaWWW:Quality of HMDS

Contents Retrieved from Microscopy Listserver Archives
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We use 98% pure HMDS and have never noticed discolouration of our gold target.

I would like to open out the discussion. Should I look for greater than HMDS of greater than 98% purity for dehydration of cultured human cell lines?

Dave



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Email: edith.stabentheiner-at-uni-graz.at Name: Edith Stabentheiner

Organization: University of Graz

Title-Subject: [Filtered] Quality of HMDS

Message: Dear colleagues

I wanted to test HMDS (hexamethyldisilazane) as an alternative to CPD
for SEM of plant material and insects. 100 % HMDS was not available and
we got only 98% (greater or equal). Nonetheless, I prepared a sample and
everything seemed to be fine. Drying was ok and there was no problem
with the vacuum. However, I observed a slight discolouration of the gold
target during sputter coating - the non sputtered gold surface turned
greyish. Do you have experienced a similar phenomen and can you explain
it to me? Is it a consequence of bad drying and/or the wrong quality of
HMDS?
Thank you for your help!

Edith Stabentheiner
Graz, Austria


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From: oshel1pe-at-cmich.edu
Date: Wed, 11 May 2011 09:26:53 -0500
Subject: [Microscopy] Re: viaWWW:Quality of HMDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We use 98-99% HMDS and have not noticed any discoloration of our
sputter coater targets.
It may be that you did not completely remove the ethanol, or did not
completely dry the sample from HMDS. How did the pump-down go in the
sputter coater? Did you have trouble getting to vacuum at first? Did
you do a few purges with argon before coating in order to completely
flush out all the air and any adsorbed water vapor, etc., from the
chamber?

Phil

} Email: edith.stabentheiner-at-uni-graz.at Name: Edith Stabentheiner
}
} Organization: University of Graz
}
} Title-Subject: [Filtered] Quality of HMDS
}
} Message: Dear colleagues
}
} I wanted to test HMDS (hexamethyldisilazane) as an alternative to CPD
} for SEM of plant material and insects. 100 % HMDS was not available and
} we got only 98% (greater or equal). Nonetheless, I prepared a sample and
} everything seemed to be fine. Drying was ok and there was no problem
} with the vacuum. However, I observed a slight discolouration of the gold
} target during sputter coating - the non sputtered gold surface turned
} greyish. Do you have experienced a similar phenomen and can you explain
} it to me? Is it a consequence of bad drying and/or the wrong quality of
} HMDS?
} Thank you for your help!
}
} Edith Stabentheiner
} Graz, Austria

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: ehaller-at-health.usf.edu
Date: Wed, 11 May 2011 09:37:22 -0500
Subject: [Microscopy] viaWWW:Quality of HMDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I believe the discoloration was the result of incomplete drying of your sample, but could also be due to sample outgassing. You may need to extend your dehydration steps. What I recommend, also, is to place samples in a 45 degree C vacuum oven after HMDS and pull a vacuum on the sample overnight to insure the sample is completely dry if you are working with a thick or difficult sample. A Graduate Student in my lab is working with shark skin, which contains a lot of connective tissue. She was unable to coat 6 samples at a time in my sputter coater. There was too much sample outgassing with her samples even with the overnight baking in the oven. With the 6 samples in the chamber, our gold-palladium target discolored, also, and her samples never coated properly, although a plasma formed in the chamber. She asked me to try another run with the coater, and I had the same results as she did with another set of samples. I noticed that I needed almost no argon gas to produce a plasma. At first, I thought I was having a problem with my gas feed and disassembled my needle valve and cleaned it, but that was not the case. The same phenomenon occurred with the next set of samples. These were samples that had been processed, oven dried and been in a bell jar over dessicant for weeks. This led me to conclude that the samples were outgassing. Extended baking at 45 degrees did not cure the problem. When we reduced the sample number to 3 in the chamber, all three samples coat fine. Try placing fewer samples in the chamber with each coating run as well.

Ed Haller

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
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Email: edith.stabentheiner-at-uni-graz.at Name: Edith Stabentheiner

Organization: University of Graz

Title-Subject: [Filtered] Quality of HMDS

Message: Dear colleagues

I wanted to test HMDS (hexamethyldisilazane) as an alternative to CPD
for SEM of plant material and insects. 100 % HMDS was not available and
we got only 98% (greater or equal). Nonetheless, I prepared a sample and
everything seemed to be fine. Drying was ok and there was no problem
with the vacuum. However, I observed a slight discolouration of the gold
target during sputter coating - the non sputtered gold surface turned
greyish. Do you have experienced a similar phenomen and can you explain
it to me? Is it a consequence of bad drying and/or the wrong quality of
HMDS?
Thank you for your help!

Edith Stabentheiner
Graz, Austria


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From: polychr-at-auth.gr
Date: Wed, 11 May 2011 10:16:02 -0500
Subject: [Microscopy] Position available: Paid PhD in microstructural characterization by TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

----------------------------------------------------------------------------
---
Paid PhD position in microstructural characterization by TEM
----------------------------------------------------------------------------
---

Location: Aristotle University of Thessaloniki, Thessaloniki, Greece

Duration: fixed appointment of 36 months

Framework: European Marie Curie ITN project NetFISiC

Job Description: Work on the characterization by Transmission Electron
Microscopy (TEM) of the samples provided by the network institutions.
Participation in project meeting. Numerous training opportunities (schools,
conferences, secondments, etc). Previous experience on TEM characterization
will be considered a great asset, but is not strictly required.

Salary: Generous package under European Marie Curie regulations (salary +
rent + travel + conferences and meetings + career exploratory allowance)

Full details can be found at:
http://ec.europa.eu/euraxess/index.cfm/jobs/jobDetails/33689063

----------------------------------------------------------------------------
---


Please forward this to anyone you think might be interested.


Prof. E.K. Polychroniadis
Department of Physics
Aristotle University of Thessaloniki
Thessaloniki 54124, Greece
Tel.: +30.2310.998163
Fax: +30.2310.998241
e-mail: polychr-at-auth.gr


==============================Original Headers==============================
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13, 21 -- From: "Polychroniadis Stathis" {polychr-at-auth.gr}
13, 21 -- To: {Microscopy-at-microscopy.com}
13, 21 -- Subject: Position available: Paid PhD in microstructural characterization by TEM
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From: travisj25-at-gmail.com
Date: Wed, 11 May 2011 14:26:27 -0500
Subject: [Microscopy] EDS - Electron Beam Excitation

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We are working with "Quantitative Analysis Software" (QAS) for an EDS
detector. The software is used both for auto identification of peaks
and for quantitation. The software was apparently developed for use
with an X-ray excitation source but may be usable also for electron
beam excitation. In our case the electron beam is a cold cathode
source with a nominal beam energy of 20 kV. Because of the nature of
the cold cathode electron beam source, there is an appreciable energy
spread in the exciting beam (as contrasted with more elaborate sources
on SEMs, etc.)

The samples for the most part are geological (rock thin sections and
thin slabs).

If anyone has any experience or references to work in this area, we
would be pleased to hear about them.


Thank you,
Travis Johnson


--
Travis Johnson
Bedford MA

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7, 30 -- Subject: EDS - Electron Beam Excitation
7, 30 -- From: Travis Johnson {travisj25-at-gmail.com}
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From: giselle.walker-at-anatomy.otago.ac.nz
Date: Wed, 11 May 2011 16:27:46 -0500
Subject: [Microscopy] EM of Bio-silica?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone in the EM community know of groups working on biological aspects of silica?

I have a PhD student who's been working on general eukaryotic mechanisms of silica transport, starting to look around for potential collaborations for postdocs. My background is taxonomy and systematics, so I don't really know the cell biological or materials science communities. Any organisms (animals, choanoflagellates, plants, big & small brown algae, radiolarians, euglyphids....), and any timescale (palaeontology as well as current molecular work as well as future biotechnology) would be fine.

thanks

Giselle

--
Dr Giselle Walker
Microscopy Otago - Electron Microscopy
Department of Anatomy & Structural Biology
University of Otago
P.O. Box 913, Dunedin 9054
New Zealand

Phone: +64 (0)3 479 7301, +64 (0)210 403 669
Email: giselle.walker-at-anatomy.otago.ac.nz





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From: larry.ackerman-at-ucsf.edu
Date: Wed, 11 May 2011 19:05:30 -0500
Subject: [Microscopy] Air Cooled Water Chiller

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,
I have a 15 month old Haskris R100 Air Cooled Water Chiller, 208V
available. My new lab has chilled water to cool a water cooled water
chiller (sounds a bit redundant doesn't it?) Contact me directly if you
are interested in a swap for some supplies. Shipping costs from San
Francisco will be your responsibility.

Thanks,
Larry

--
Larry Ackerman, Specialist
Electron Microscopy Lab
Manager, Diabetes& Endocrinology Research Center Microscopy Core
UCSF, Dept. of Anatomy, Rm S1355
513 Parnassus Ave., Box 0452
San Francisco, CA 94143

larry.ackerman-at-ucsf.edu

415-999-4758


==============================Original Headers==============================
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From: giselle.walker-at-anatomy.otago.ac.nz
Date: Thu, 12 May 2011 00:27:35 -0500
Subject: [Microscopy] TEM of biology: mystery precipitate on cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Can anyone suggest solutions (pun probably intended) to the problem of mystery precipitate on cells prepared for TEM? This is 5nm- 15 nm diameter black dots that appear on cells, but not on resin sections or on support film. The dots localise strongly to chloroplasts and myelin when osmium is involved, but not otherwise. In glutaraldehyde-only fixes the dots stay on the outside of the cells or in vacuoles.

Many people have posted before about precipitates; on the basis of having gone through the Listserver archives we decided to try a series of experiments to try and get rid of the mystery 5nm dots currently gracing all cells prepared for TEM in this lab. Our results are inconclusive, thus we're wondering if anyone else has tried anything and found a way of making the dots disappear.

I have tried many combinations and permutations of local/ bought water, 3 different purities of glutaraldehyde, paraformaldehyde with and without glut, new osmium, lots of different buffers, new glassware, plastic containers instead of glassware... the only thing i haven't tried yet is the ruthenium/ veronal acetate fixes...

Anyone with time to have a look can find details of some of the experiments in the pdf here,
{http://dl.dropbox.com/u/10613310/PrecipLIST-12May2011.pdf}
and these are representative of other results with different buffers. Obviously the cells aren't particularly nicely fixed - that's another set of experiments...

Any suggestions most gratefully received

thanks

Giselle


--
Dr Giselle Walker
Microscopy Otago - Electron Microscopy
Department of Anatomy & Structural Biology
University of Otago
P.O. Box 913, Dunedin 9054
New Zealand

Phone: +64 (0)3 479 7301, +64 (0)210 403 669
Email: giselle.walker-at-anatomy.otago.ac.nz





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14, 33 -- Date: Thu, 12 May 2011 17:27:32 +1200
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From: contact-at-integrityscientific.com
Date: Thu, 12 May 2011 03:13:50 -0500
Subject: [Microscopy] WDX providers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,
someone has just asked me which companies provide add-on WDX
systems for SEMs, they are looking to purchase a system. I can think of
a few (e.g. Edax, Oxford Instruments, Thermo) , but I'm not confident
that I know all of them - for example I would have thought Bruker make a
system but there's nothing on their website. Any ideas?
I would also be grateful for feedback on system performance, ease of
use, quality of service response etc. from anyone who has one of these
systems which might help make a decision on a provider.

Many thanks indeed

Richard Beanland

==============================Original Headers==============================
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From: jmircheski-at-us.es
Date: Thu, 12 May 2011 05:05:19 -0500
Subject: [Microscopy] Re: TEM of biology: mystery precipitate on cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



Hi Giselle,

I got similar precipitate when I didn't wash out the PBS enough before
block-contrasting in Uranyl acetate. Also, I got this type of
precipitate
when I left my samples on Osmium too long (} 3h, and they were not the
ones
with the PBS not washed :) ) If you mix PBS (or any other
phosphate) with Uranyl, you will get fine precipitate. I am not sure
about the
mechanism of precipitate forming after long(er) Osmium exposure.

I read one paper where the author identified Calcium (intracellular) as
black precipitate, but concentrated in mitochondria and not diffused.
But I don't remember the paper, nor the author, and I am
not sure how accurate is that identification.

Maybe someone else has more and other ideas regarding the precipitate.

Hope it helps,

Josif

On Thu, 12 May 2011 00:41:58 -0500, giselle.walker-at-anatomy.otago.ac.nz
wrote:

}
----------------------------------------------------------------------------
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}
} Can anyone suggest solutions (pun probably intended) to the problem
} of
} mystery precipitate on cells prepared for TEM? This is 5nm- 15 nm
} diameter black dots that appear on cells, but not on resin sections
} or on
} support film. The dots localise strongly to chloroplasts and myelin
} when
} osmium is involved, but not otherwise. In glutaraldehyde-only fixes
} the
} dots stay on the outside of the cells or in vacuoles.
}
} Many people have posted before about precipitates; on the basis of
} having
} gone through the Listserver archives we decided to try a series of
} experiments to try and get rid of the mystery 5nm dots currently
} gracing
} all cells prepared for TEM in this lab. Our results are inconclusive,
} thus we're wondering if anyone else has tried anything and found a
} way of
} making the dots disappear.
}
} I have tried many combinations and permutations of local/ bought
} water, 3
} different purities of glutaraldehyde, paraformaldehyde with and
} without
} glut, new osmium, lots of different buffers, new glassware, plastic
} containers instead of glassware... the only thing i haven't tried yet
} is
} the ruthenium/ veronal acetate fixes...
}
} Anyone with time to have a look can find details of some of the
} experiments in the pdf here,
}
} and these are representative of other results with different buffers.
} Obviously the cells aren't particularly nicely fixed - that's another
} set
} of experiments...
}
} Any suggestions most gratefully received
}
} thanks
}
} Giselle
}
} --
} Dr Giselle Walker
} Microscopy Otago - Electron Microscopy
} Department of Anatomy & Structural Biology
} University of Otago
} P.O. Box 913, Dunedin 9054
} New Zealand
}
} Phone: +64 (0)3 479 7301, +64 (0)210 403 669
} Email: giselle.walker-at-anatomy.otago.ac.nz [4]


Links:
------
[1] http://www.microscopy.com/MicroscopyListserver
[2] http://www.microscopy.com/MicroscopyListserver/FAQ.html
[3] http://dl.dropbox.com/u/10613310/PrecipLIST-12May2011.pdf
[4] mailto:giselle.walker-at-anatomy.otago.ac.nz

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From: ehaller-at-health.usf.edu
Date: Thu, 12 May 2011 08:13:20 -0500
Subject: [Microscopy] TEM of biology: mystery precipitate on cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Giselle,

The dreaded black dot plague! I've struggled with this precipitate here in Tampa for years. It seems that our groundwater in Florida is rich in phosphates, and that the Millipore and similar filtration units don't always take all of the phosphates out of the water when the systems filter the water. This results in phosphate microcrystal precipitates in tissue processed for TEM if I use filtered water. When I switched to true distilled water, this issue resolved itself. I now use true distilled water to make my reagents in, and for my rinses. I work with phosphate buffered fixatives, which preserve the cytosol of mammalian tissue better. After glutaraldehyde fixation, I do a half hour buffer rinse, 3x 10 minutes each, minimum, before osmication, and even longer if I am processing tissue such as myelinated nerve, in which case I rinse overnight in buffer. After osmication, I rinse in distilled water, again 3x 10 minutes each, minimum, and longer if the tissue is thick or dense, to remove both the osmium and the phosphate salts. This has cured the precipitate problems for me. Some advice I gave another E.M. technician was to rinse in Tris buffer after glutaraldehyde and osmicate in Tris. The two buffer systems are compatible. You could consider this, also. Let me know what you find out. If you switch to cacodylate buffer, you should not get this precipitate, if phosphate salts are the culprit. I don't know if this is a possibility for you. I don't like the look of my tissue when working with cacodylate buffer, and the arsenic in the buffer is something I try to avoid.

Ed

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: giselle.walker-at-anatomy.otago.ac.nz [giselle.walker-at-anatomy.otago.ac.nz]
Sent: Thursday, May 12, 2011 1:40 AM
To: Haller, Edward

Can anyone suggest solutions (pun probably intended) to the problem of mystery precipitate on cells prepared for TEM? This is 5nm- 15 nm diameter black dots that appear on cells, but not on resin sections or on support film. The dots localise strongly to chloroplasts and myelin when osmium is involved, but not otherwise. In glutaraldehyde-only fixes the dots stay on the outside of the cells or in vacuoles.

Many people have posted before about precipitates; on the basis of having gone through the Listserver archives we decided to try a series of experiments to try and get rid of the mystery 5nm dots currently gracing all cells prepared for TEM in this lab. Our results are inconclusive, thus we're wondering if anyone else has tried anything and found a way of making the dots disappear.

I have tried many combinations and permutations of local/ bought water, 3 different purities of glutaraldehyde, paraformaldehyde with and without glut, new osmium, lots of different buffers, new glassware, plastic containers instead of glassware... the only thing i haven't tried yet is the ruthenium/ veronal acetate fixes...

Anyone with time to have a look can find details of some of the experiments in the pdf here,
{http://dl.dropbox.com/u/10613310/PrecipLIST-12May2011.pdf}
and these are representative of other results with different buffers. Obviously the cells aren't particularly nicely fixed - that's another set of experiments...

Any suggestions most gratefully received

thanks

Giselle


--
Dr Giselle Walker
Microscopy Otago - Electron Microscopy
Department of Anatomy & Structural Biology
University of Otago
P.O. Box 913, Dunedin 9054
New Zealand

Phone: +64 (0)3 479 7301, +64 (0)210 403 669
Email: giselle.walker-at-anatomy.otago.ac.nz





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From: john.robson-at-boehringer-ingelheim.com
Date: Thu, 12 May 2011 09:56:44 -0500
Subject: [Microscopy] WDX providers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Back in the dark ages, in the 1980s, we had a Microspec WDX-2A on our SEM. We had originally bought it for light element analyses because our EDS could not get below sodium. Since we got a light element EDS detectors we found little need for it. There was one occasion we used it to confirm the EDS-measured ratio of Pb and Bi in a sample. Basically it fell into disuse.

Granted, that system was quite limited and a bit cumbersome not having the computerization that is available today. That could have made a difference if we could have easily incorporated WDS measurements with EDS measurements.

We also had to deal with different requirements for WDS and EDS. We had a Si(Li) detector that was hitting 30% deadtime at 1500 cps. The WDS was barely registering counts at those conditions. If we cranked up the beam to get good WDS counts, the EDS detector had to be retracted and/or used at short processing times to keep the deadtime manageable. I know that issue is less now with the new SDD systems.

I wonder what your colleague has in mind for WDX and if it is worth the trouble and expense to pursue the matter. I am spending half of my time on a microprobe now, so I know there is definitely a place for WDS. I'm sure the vendors could cite some examples of where the combined system is useful. I just hope your colleague has thought it well through. I spent nearly 30 years working with EDS alone and know it can be quite useful. With new developments it is getting all the more useful.

Warren Straszheim

-----Original Message-----
X-from: contact-at-integrityscientific.com [mailto:contact-at-integrityscientific.com]
Sent: Thursday, May 12, 2011 3:15 AM
To: wesaia-at-iastate.edu

Does anyone have experience with the microcalorimetry EDS detector (MICA1600)
from STAR Cryoelectronics? I know it is a high cost addition but it seems to
improve the energy resolution of EDS making it competitive with WDS.

John A. Robson
Research Scientist
Boehringer Ingelheim Pharmaceuticals, Inc.
(203)798-5640


-----Original Message-----
X-from: contact-at-integrityscientific.com
[mailto:contact-at-integrityscientific.com]
Sent: Thursday, May 12, 2011 4:22 AM
To: Robson,John (AN) BIP-US-R

Dear All,
someone has just asked me which companies provide add-on WDX
systems for SEMs, they are looking to purchase a system. I can think of
a few (e.g. Edax, Oxford Instruments, Thermo) , but I'm not confident
that I know all of them - for example I would have thought Bruker make a
system but there's nothing on their website. Any ideas?
I would also be grateful for feedback on system performance, ease of
use, quality of service response etc. from anyone who has one of these
systems which might help make a decision on a provider.

Many thanks indeed

Richard Beanland

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From: FMonson-at-wcupa.edu
Date: Thu, 12 May 2011 11:14:29 -0500
Subject: [Microscopy] Re: TEM of biology: mystery precipitate on cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

ELECTRON MICROSCOPY AND ELECTRON PROBE ANALYSIS OF MITOCHONDRIAL CATION
ACCUMULATION IN SMOOTH MUSCLE
A . P . SOMLYO, A . V . SOMLYO, C . E . DEVINE, P . D . PETERS,
and T . A . HALL

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2109306/pdf/723.pdf

Perhaps this???

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl

-----Original Message-----
X-from: jmircheski-at-us.es [mailto:jmircheski-at-us.es]
Sent: Thursday, May 12, 2011 6:12 AM
To: Monson, Frederick



Hi Giselle,

I got similar precipitate when I didn't wash out the PBS enough before
block-contrasting in Uranyl acetate. Also, I got this type of
precipitate
when I left my samples on Osmium too long (} 3h, and they were not the
ones
with the PBS not washed :) ) If you mix PBS (or any other
phosphate) with Uranyl, you will get fine precipitate. I am not sure
about the
mechanism of precipitate forming after long(er) Osmium exposure.

I read one paper where the author identified Calcium (intracellular) as
black precipitate, but concentrated in mitochondria and not diffused.
But I don't remember the paper, nor the author, and I am
not sure how accurate is that identification.

Maybe someone else has more and other ideas regarding the precipitate.

Hope it helps,

Josif

On Thu, 12 May 2011 00:41:58 -0500, giselle.walker-at-anatomy.otago.ac.nz
wrote:

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}
} Can anyone suggest solutions (pun probably intended) to the problem
} of
} mystery precipitate on cells prepared for TEM? This is 5nm- 15 nm
} diameter black dots that appear on cells, but not on resin sections
} or on
} support film. The dots localise strongly to chloroplasts and myelin
} when
} osmium is involved, but not otherwise. In glutaraldehyde-only fixes
} the
} dots stay on the outside of the cells or in vacuoles.
}
} Many people have posted before about precipitates; on the basis of
} having
} gone through the Listserver archives we decided to try a series of
} experiments to try and get rid of the mystery 5nm dots currently
} gracing
} all cells prepared for TEM in this lab. Our results are inconclusive,
} thus we're wondering if anyone else has tried anything and found a
} way of
} making the dots disappear.
}
} I have tried many combinations and permutations of local/ bought
} water, 3
} different purities of glutaraldehyde, paraformaldehyde with and
} without
} glut, new osmium, lots of different buffers, new glassware, plastic
} containers instead of glassware... the only thing i haven't tried yet
} is
} the ruthenium/ veronal acetate fixes...
}
} Anyone with time to have a look can find details of some of the
} experiments in the pdf here,
}
} and these are representative of other results with different buffers.
} Obviously the cells aren't particularly nicely fixed - that's another
} set
} of experiments...
}
} Any suggestions most gratefully received
}
} thanks
}
} Giselle
}
} --
} Dr Giselle Walker
} Microscopy Otago - Electron Microscopy
} Department of Anatomy & Structural Biology
} University of Otago
} P.O. Box 913, Dunedin 9054
} New Zealand
}
} Phone: +64 (0)3 479 7301, +64 (0)210 403 669
} Email: giselle.walker-at-anatomy.otago.ac.nz [4]


Links:
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[2] http://www.microscopy.com/MicroscopyListserver/FAQ.html
[3] http://dl.dropbox.com/u/10613310/PrecipLIST-12May2011.pdf
[4] mailto:giselle.walker-at-anatomy.otago.ac.nz

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23, 37 -- From FMonson-at-wcupa.edu Thu May 12 11:14:29 2011
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From: jkrupp-at-deltacollege.edu
Date: Thu, 12 May 2011 11:47:26 -0500
Subject: [Microscopy] Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Friends:

We are caught on the horns of a dilemma. For nearly forty years, Delta College has trained EM technicians for positions in academia and industry. For most of those forty years our instruments, now numbering 3 TEM's, 4, SEM's, an AFM and an FIB, have been covered by service contracts. Our instruments are used all day, every day for student training.

As you may have heard, funding for California schools is getting so tight that the bean counters are turning to drastic measures to make ends meet. Among pressures put on us is a requirement that we enroll at least 20 students/class, nearly impossible in our advanced, hand-on classes. In addition, the administration is now reluctant to authorize service contracts for our instruments.

Many or our microscopes are older and require more repairs due to their constant use as training instruments. We have received good service from our scope vendor, but it is expensive, mostly because we have so many instruments. The admin. people only look at the bottom line and when they see the big number, they go ballistic.

We are afraid that if we drop our current service contracts that the manufacturer will not pick them up if we want to come back after a year off their service. We are afraid that if we go to pay as you go with the manufacturer, we will be low in their priority list, something not good with so many students depending on microscope time to finish projects. We are afraid that if we can find a cheaper, independent service provider, parts will be hard to get and the price of the parts would be in addition to the cost of the service agreement, whereas parts are included in our current contracts.

This is getting long. Bottom line is we are asking for any advice or suggestions about how to approach this. I have heard all the horror stories about 3rd party insurance plans, etc. Are those stories true? Is it true that vendors move you to the bottom of the list without a contract? What is your experience if ever faced by this kind of situation? What kind of strategy has worked, or not?

Hoping for a miracle,

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: spurgeon-at-drexel.edu
Date: Thu, 12 May 2011 12:26:50 -0500
Subject: [Microscopy] Viewing STEM-EDS maps and spectra

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

One of our colleagues recently sent us some STEM-EDS maps of a thin
film sample and we're trying to find a viewer for the files. The data
was recorded on a JEOL 2010F with a Thermo Noran Vantage EDX system
and sent to us in a ".si" format. Are there any free viewers or
utilities that we can use to look at the spectra and maps? Ideally
we'd like to be able to export graphs and images, or at least raw
data, for publication.

Any help would be greatly appreciated. Thanks!

--
Steven Spurgeon
Dynamic Characterization Group
Department of Materials Science & Engineering
Drexel University

Office: Bossone 105
Email: spurgeon-at-drexel.edu
Web: http://www.materials.drexel.edu/dcg/

==============================Original Headers==============================
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From: rok210-at-lehigh.edu
Date: Thu, 12 May 2011 12:38:25 -0500
Subject: [Microscopy] Re: Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jonathan,

the service contract for a new microscope is worth trying to include in
the price paid for at least about 3 years. During this time keeping a
record of each and every little thing that goes wrong will be useful to
whoever eventually takes over the maintenance and repair duties. A
service contract costs on average about 10% of the purchase price, so a
three year contract is a substantial saving that will please the finance
people.

The service you get is very dependent on the people who work for the
service departments of the individual companies; often cutting edge
instruments are unknown quantities to the field service engineers. You
don't want to waste money while the instrument is down for the engineer
to be educated on-site; so try to get the first few years with a service
contract (beyond the warranty period). Don't sign-off the instrument
until you are happy that everything is working, the installation needs
to settle the instrument, so try everything yourself before being satisfied.

Eventually though there is a time when you are going to be better off
without paying the huge bills to the service manager. It has to happen
and will depend on you and your staff, to take the brunt of the work,
using instructions of friendly service engineers. I don't believe the
stories about low priority, in fact I'd argue they want your money; and
so long as you have the quotation matched to the purchase order, you are
on the schedule, same as everyone else.

If you have a lot of instruments from one company and it makes financial
sense to hire an ex-service engineer (it's down to respect they feel
from you) it's a good route, if you get the right one. Parts are often
sold from a separate office to the service manager, so again if you have
the numbers and they have the stock you are going to be fine. For
instance we wanted some resistors and didn't want to wait three months
for delivery, so alternatives were found that we believe are as good.

Good luck

Rob Keyse

On 5/12/2011 12:54 PM, jkrupp-at-deltacollege.edu wrote:
} ----------------------------------------------------------------------------
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} ----------------------------------------------------------------------------
}
} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta College has trained EM technicians for positions in academia and industry. For most of those forty years our instruments, now numbering 3 TEM's, 4, SEM's, an AFM and an FIB, have been covered by service contracts. Our instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so tight that the bean counters are turning to drastic measures to make ends meet. Among pressures put on us is a requirement that we enroll at least 20 students/class, nearly impossible in our advanced, hand-on classes. In addition, the administration is now reluctant to authorize service contracts for our instruments.
}
} Many or our microscopes are older and require more repairs due to their constant use as training instruments. We have received good service from our scope vendor, but it is expensive, mostly because we have so many instruments. The admin. people only look at the bottom line and when they see the big number, they go ballistic.
}
} We are afraid that if we drop our current service contracts that the manufacturer will not pick them up if we want to come back after a year off their service. We are afraid that if we go to pay as you go with the manufacturer, we will be low in their priority list, something not good with so many students depending on microscope time to finish projects. We are afraid that if we can find a cheaper, independent service provider, parts will be hard to get and the price of the parts would be in addition to the cost of the service agreement, whereas parts are included in our current contracts.
}
} This is getting long. Bottom line is we are asking for any advice or suggestions about how to approach this. I have heard all the horror stories about 3rd party insurance plans, etc. Are those stories true? Is it true that vendors move you to the bottom of the list without a contract? What is your experience if ever faced by this kind of situation? What kind of strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
}
} ==============================Original Headers==============================
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From: WHITTAKS-at-si.edu
Date: Thu, 12 May 2011 13:24:53 -0500
Subject: [Microscopy] Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ironically we just last week were informed of an exploratory committee being set up to address the rather substantial service contract costs the Institution pays annually with tax dollars drying up-and Jonathan- you were tops of my list to call on. One of the measures under exploration is the hiring of individuals to provide service onsite. I have not heard of a budget academic type EM facility that has made this model cost effective but would be interested in discussing this with anyone out there who has.

Just examining EM's, my Lab has 4 basic units from 3 different manufacturers all under continuous contract and if we include the rest of the machines in very close proximity we have 7 basic from 4. And the whole place 10 from 5. I would love to hear from anyone who is making onsite service in the absence of a contract work; in an academic type setting; with instruments from multiple manufacturers driven by relatively inexperienced users.

Thanks for any input,


Scott Whittaker
Chief NMNH Imaging
Manager SEM Lab
Smithsonian Institution
National Museum of Natural History
PO Box 37012   MRC104
Washington DC 20013-7012
202-633-0891

{} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {}

The SEM Lab move is complete and is now located in room EG13B. East Wing Ground floor.


-----Original Message-----
X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
Sent: Thursday, May 12, 2011 12:49 PM
To: Whittaker, Scott

Friends:

We are caught on the horns of a dilemma. For nearly forty years, Delta College has trained EM technicians for positions in academia and industry. For most of those forty years our instruments, now numbering 3 TEM's, 4, SEM's, an AFM and an FIB, have been covered by service contracts. Our instruments are used all day, every day for student training.

As you may have heard, funding for California schools is getting so tight that the bean counters are turning to drastic measures to make ends meet. Among pressures put on us is a requirement that we enroll at least 20 students/class, nearly impossible in our advanced, hand-on classes. In addition, the administration is now reluctant to authorize service contracts for our instruments.

Many or our microscopes are older and require more repairs due to their constant use as training instruments. We have received good service from our scope vendor, but it is expensive, mostly because we have so many instruments. The admin. people only look at the bottom line and when they see the big number, they go ballistic.

We are afraid that if we drop our current service contracts that the manufacturer will not pick them up if we want to come back after a year off their service. We are afraid that if we go to pay as you go with the manufacturer, we will be low in their priority list, something not good with so many students depending on microscope time to finish projects. We are afraid that if we can find a cheaper, independent service provider, parts will be hard to get and the price of the parts would be in addition to the cost of the service agreement, whereas parts are included in our current contracts.

This is getting long. Bottom line is we are asking for any advice or suggestions about how to approach this. I have heard all the horror stories about 3rd party insurance plans, etc. Are those stories true? Is it true that vendors move you to the bottom of the list without a contract? What is your experience if ever faced by this kind of situation? What kind of strategy has worked, or not?

Hoping for a miracle,

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: vray-at-partbeamsystech.com
Date: Thu, 12 May 2011 18:15:47 -0500
Subject: [Microscopy] Re: Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jon,

Service from the scope companies is always the best bet until the money runs out.

You need contracts of some type for if a scope runs into a big problem just one off service contract call can cost nearly as much as a year's contract. Perhaps if you can list the service calls that you've had over the last year and price the hourly rate for non-contract calls you can convince those who are questioning the cost that it is a good deal. Do not forget to add in transportation etc. for the clock starts running from the time the engineer leaves the office I believe, not when he arrives at your lab. Ask your friendly scope companies and they will give you the prices.

In my previous employment I had used third party services from 4 different companies after our scopes were old. We had a TEM and a SEM under one PI and his grant. I did not hear about money coming from other sources.

The best was a service tech who retired and started up his own business. This was great. He knew my TEM, the cost was less than the scope company and our old scope was no longer covered for parts anyway. Oh the days of dumpster diving when we heard of a scope being discarded! He had a major stroke from which he did not recover and that terminated our contract.

The service that followed him had some drawbacks in that the man had never serviced our particular TEM before and at times I was telling him how to fix it. It was written into our contract that someone (me) would assist as needed during all service calls. He died and I kept the scope going for another year before I could not fix the problems any more. The scope was just under 40 years old. I turned to borrowing time on a TEM in another department until my PI retired shortly there after.

Our older SEM did not pose a problem for the companies that serviced it. They came in a timely manner and were very good at keeping it in proper condition.

Maybe you can talk a company who has employed some of the Delta EM Graduates to sponsor a service contract for you as a tax deduction. It might work!

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.


________________________________
X-from: {jkrupp-at-deltacollege.edu}
Reply-To: {jkrupp-at-deltacollege.edu}

I always advise institutional users to stay with OEM service contract if
they can, or to purchase a service contract from the reputable
third-party service provider as a second choice.

In the beginning of this year I've heard from two industrial users of
FIB equipment that they are not allowed to have a service contract with
anybody and forced into "pay as you go" mode. Well, guess what - one of
them already has her FIB "down" for over a month, and there is nothing I
or anyone else can do about it until the institution shells over US$20K
in parts and commits to pay for labor of changing them.

Think twice.

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com


On 5/12/2011 12:48 PM, jkrupp-at-deltacollege.edu wrote:
} ----------------------------------------------------------------------------
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} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta College has trained EM technicians for positions in academia and industry. For most of those forty years our instruments, now numbering 3 TEM's, 4, SEM's, an AFM and an FIB, have been covered by service contracts. Our instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so tight that the bean counters are turning to drastic measures to make ends meet. Among pressures put on us is a requirement that we enroll at least 20 students/class, nearly impossible in our advanced, hand-on classes. In addition, the administration is now reluctant to authorize service contracts for our instruments.
}
} Many or our microscopes are older and require more repairs due to their constant use as training instruments. We have received good service from our scope vendor, but it is expensive, mostly because we have so many instruments. The admin. people only look at the bottom line and when they see the big number, they go ballistic.
}
} We are afraid that if we drop our current service contracts that the manufacturer will not pick them up if we want to come back after a year off their service. We are afraid that if we go to pay as you go with the manufacturer, we will be low in their priority list, something not good with so many students depending on microscope time to finish projects. We are afraid that if we can find a cheaper, independent service provider, parts will be hard to get and the price of the parts would be in addition to the cost of the service agreement, whereas parts are included in our current contracts.
}
} This is getting long. Bottom line is we are asking for any advice or suggestions about how to approach this. I have heard all the horror stories about 3rd party insurance plans, etc. Are those stories true? Is it true that vendors move you to the bottom of the list without a contract? What is your experience if ever faced by this kind of situation? What kind of strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
}
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From: modla-at-dbi.udel.edu
Date: Thu, 12 May 2011 20:47:10 -0500
Subject: [Microscopy] Dextran for HPF

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi everyone,

I was wondering if anyone has issues with complete infiltration of dextran when used as a filler for high pressure freezing? Lately, I've been using 20% Dextran (MW 70,000), but the embedded blocks (in Embed-812) are very difficult to section. Although the sample itself seems well infiltrated, the surrounding dextran is extremely hydrophillic and doesn't section smoothly. Rather, the sections tend to crinkle up at the knife edge and never fully flatten. This has happened for the past 2 high pressure freezing runs, and I'm tempted to try a different cryo-protectant. I was wondering if the issue lies in the concentration or MW of the dextran we are using.

Thanks,
Shannon

==============================Original Headers==============================
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From: David.Patton-at-uwe.ac.uk
Date: Fri, 13 May 2011 04:58:55 -0500
Subject: [spam]* [Microscopy] Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We went off contract last year and had to wait over 4 months for a service. The engineer said that if it had been a breakdown the delay would have been the same.

Dave

-----Original Message-----
X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
Sent: 12 May 2011 17:50
To: David Patton

Friends:

We are caught on the horns of a dilemma. For nearly forty years, Delta College has trained EM technicians for positions in academia and industry. For most of those forty years our instruments, now numbering 3 TEM's, 4, SEM's, an AFM and an FIB, have been covered by service contracts. Our instruments are used all day, every day for student training.

As you may have heard, funding for California schools is getting so tight that the bean counters are turning to drastic measures to make ends meet. Among pressures put on us is a requirement that we enroll at least 20 students/class, nearly impossible in our advanced, hand-on classes. In addition, the administration is now reluctant to authorize service contracts for our instruments.

Many or our microscopes are older and require more repairs due to their constant use as training instruments. We have received good service from our scope vendor, but it is expensive, mostly because we have so many instruments. The admin. people only look at the bottom line and when they see the big number, they go ballistic.

We are afraid that if we drop our current service contracts that the manufacturer will not pick them up if we want to come back after a year off their service. We are afraid that if we go to pay as you go with the manufacturer, we will be low in their priority list, something not good with so many students depending on microscope time to finish projects. We are afraid that if we can find a cheaper, independent service provider, parts will be hard to get and the price of the parts would be in addition to the cost of the service agreement, whereas parts are included in our current contracts.

This is getting long. Bottom line is we are asking for any advice or suggestions about how to approach this. I have heard all the horror stories about 3rd party insurance plans, etc. Are those stories true? Is it true that vendors move you to the bottom of the list without a contract? What is your experience if ever faced by this kind of situation? What kind of strategy has worked, or not?

Hoping for a miracle,

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: vray-at-partbeamsystech.com
Date: Fri, 13 May 2011 07:56:45 -0500
Subject: [Microscopy] [spam]* Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dave's message below compelled me to explain a difference between
service contract and one-off service call from the vendor's perspective.

For most of FIB/SEM equipment service providers, both small and large,
equipment service is a business activity; it must be profitable or could
not continue. Delivering service and making it possible also costs
money: most of users do not realize how enormous are the aggregated
expenses of labor, travel, sourcing parts, re-designing or substituting
obsolete components, warehousing, bean counting, etc...

When you buy a service contract from the certain provider, it not just
gives you reliable support with predictable response time, but also
gives that service organization reliable stream of revenue and
predictable work load. Stability allows to plan and structure business,
retain and maintain necessary resources, source and stock parts, etc.

If customer goes off service contract then situation becomes completely
unpredictable: he/she may call in for service, but also may do
self-service, hire internal service person, or do whatever else. In such
situation managers of the service organization have no other choice but
to prepare for the worse and assume that there will be no service calls
from this customer. To insure survival of the organization, cost-saving
measures follow immediately: engineers are laid off, facilities are
closed or downsized, parts are not procured and not stored, and so
forth. These measures are inevitable - otherwise service organization
simply could not continue to exist. Reduced resources will usually be
matched to the needs of contract-paying customers, with little to no
spare capacity.

When odd service call comes from the customer without the service
contract, it is treated as such - one-off, single-case business, which
may never return. Yes, it is nice to get some extra revenue, but
(already reduced) resources of engineering time and parts will be given
to this call only if and when all the needs of service-contract
customers are taken care of, and not a split second earlier.

The bottom line is that service organization simply can't provide more
service then what it paid for, and overall level of service users
receive will always degrade in one way or another, as the service
revenue decreases.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 5/13/2011 5:59 AM, David.Patton-at-uwe.ac.uk wrote:
} ----------------------------------------------------------------------------
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} We went off contract last year and had to wait over 4 months for a service. The engineer said that if it had been a breakdown the delay would have been the same.
}
} Dave
}
} -----Original Message-----
} X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
} Sent: 12 May 2011 17:50
} To: David Patton
} Subject: [spam]* [Microscopy] Microscope service strategies
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
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} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta College has trained EM technicians for positions in academia and industry. For most of those forty years our instruments, now numbering 3 TEM's, 4, SEM's, an AFM and an FIB, have been covered by service contracts. Our instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so tight that the bean counters are turning to drastic measures to make ends meet. Among pressures put on us is a requirement that we enroll at least 20 students/class, nearly impossible in our advanced, hand-on classes. In addition, the administration is now reluctant to authorize service contracts for our instruments.
}
} Many or our microscopes are older and require more repairs due to their constant use as training instruments. We have received good service from our scope vendor, but it is expensive, mostly because we have so many instruments. The admin. people only look at the bottom line and when they see the big number, they go ballistic.
}
} We are afraid that if we drop our current service contracts that the manufacturer will not pick them up if we want to come back after a year off their service. We are afraid that if we go to pay as you go with the manufacturer, we will be low in their priority list, something not good with so many students depending on microscope time to finish projects. We are afraid that if we can find a cheaper, independent service provider, parts will be hard to get and the price of the parts would be in addition to the cost of the service agreement, whereas parts are included in our current contracts.
}
} This is getting long. Bottom line is we are asking for any advice or suggestions about how to approach this. I have heard all the horror stories about 3rd party insurance plans, etc. Are those stories true? Is it true that vendors move you to the bottom of the list without a contract? What is your experience if ever faced by this kind of situation? What kind of strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
}
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From: kenconverse-at-qualityimages.biz
Date: Fri, 13 May 2011 08:22:07 -0500
Subject: [Microscopy] [spam]* Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Valery,
Very well stated. The only thing I might add is that the customer with a
service contract is guaranteed certain things, such as preventive
maintenance, operation to specification, perhaps even guaranteed maximum
down-time. The one-off customer has none of this. The service organization
is contractually bound to the contract customer. Period. Yes, the one off
cash is nice, but the regular customers are far more valuable in the long
run. They often are happier customer, also.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Friday, May 13, 2011 8:59 AM
To: kenconverse-at-qualityimages.biz

Dave's message below compelled me to explain a difference between
service contract and one-off service call from the vendor's perspective.

For most of FIB/SEM equipment service providers, both small and large,
equipment service is a business activity; it must be profitable or could
not continue. Delivering service and making it possible also costs
money: most of users do not realize how enormous are the aggregated
expenses of labor, travel, sourcing parts, re-designing or substituting
obsolete components, warehousing, bean counting, etc...

When you buy a service contract from the certain provider, it not just
gives you reliable support with predictable response time, but also
gives that service organization reliable stream of revenue and
predictable work load. Stability allows to plan and structure business,
retain and maintain necessary resources, source and stock parts, etc.

If customer goes off service contract then situation becomes completely
unpredictable: he/she may call in for service, but also may do
self-service, hire internal service person, or do whatever else. In such
situation managers of the service organization have no other choice but
to prepare for the worse and assume that there will be no service calls
from this customer. To insure survival of the organization, cost-saving
measures follow immediately: engineers are laid off, facilities are
closed or downsized, parts are not procured and not stored, and so
forth. These measures are inevitable - otherwise service organization
simply could not continue to exist. Reduced resources will usually be
matched to the needs of contract-paying customers, with little to no
spare capacity.

When odd service call comes from the customer without the service
contract, it is treated as such - one-off, single-case business, which
may never return. Yes, it is nice to get some extra revenue, but
(already reduced) resources of engineering time and parts will be given
to this call only if and when all the needs of service-contract
customers are taken care of, and not a split second earlier.

The bottom line is that service organization simply can't provide more
service then what it paid for, and overall level of service users
receive will always degrade in one way or another, as the service
revenue decreases.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 5/13/2011 5:59 AM, David.Patton-at-uwe.ac.uk wrote:
}
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} We went off contract last year and had to wait over 4 months for a
service. The engineer said that if it had been a breakdown the delay would
have been the same.
}
} Dave
}
} -----Original Message-----
} X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
} Sent: 12 May 2011 17:50
} To: David Patton
} Subject: [spam]* [Microscopy] Microscope service strategies
}
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} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta
College has trained EM technicians for positions in academia and industry.
For most of those forty years our instruments, now numbering 3 TEM's, 4,
SEM's, an AFM and an FIB, have been covered by service contracts. Our
instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so tight
that the bean counters are turning to drastic measures to make ends meet.
Among pressures put on us is a requirement that we enroll at least 20
students/class, nearly impossible in our advanced, hand-on classes. In
addition, the administration is now reluctant to authorize service contracts
for our instruments.
}
} Many or our microscopes are older and require more repairs due to their
constant use as training instruments. We have received good service from our
scope vendor, but it is expensive, mostly because we have so many
instruments. The admin. people only look at the bottom line and when they
see the big number, they go ballistic.
}
} We are afraid that if we drop our current service contracts that the
manufacturer will not pick them up if we want to come back after a year off
their service. We are afraid that if we go to pay as you go with the
manufacturer, we will be low in their priority list, something not good with
so many students depending on microscope time to finish projects. We are
afraid that if we can find a cheaper, independent service provider, parts
will be hard to get and the price of the parts would be in addition to the
cost of the service agreement, whereas parts are included in our current
contracts.
}
} This is getting long. Bottom line is we are asking for any advice or
suggestions about how to approach this. I have heard all the horror stories
about 3rd party insurance plans, etc. Are those stories true? Is it true
that vendors move you to the bottom of the list without a contract? What is
your experience if ever faced by this kind of situation? What kind of
strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
}
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} 23, 46 -- From: David Patton {David.Patton-at-uwe.ac.uk}
} 23, 46 -- To: "'Microscopy-at-microscopy.com'" {Microscopy-at-microscopy.com}
} 23, 46 -- Date: Fri, 13 May 2011 10:57:55 +0100
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From: FMonson-at-wcupa.edu
Date: Fri, 13 May 2011 10:44:57 -0500
Subject: [Microscopy] Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

It is my understanding, purely hearsay, you understand, that NIST and NIH have dedicated vendor service engineers attending some installations of individual EM's.

Forgive the thoughts from the mote to the asteroid, but the notion of planning for/against the TOTAL COST OF OWNERSHIP is not new and is likely taught in all credible schools of business. Whether anyone hires individuals with such expertise is debatable.

We, for example just took receipt of a small XRD whose fundamental OS is apparently a vendor-specific linux on which an embedded version of XP runs the windows applications. There must be a reason for manufacturers to finally resort to this reasonable tactic in production and service. This one anyway must see the advantage to be in control of all of its product.

To seek efficiency in service, one probably should seek less diversity in source of large scientific instrumentation. If all electron microscopes come from one vendor - say, ten instruments - it might be more efficient to pay for one resident service engineer - trained and paid by the vendor, than to pay for one engineer to service a diversity within ten and not to have vendor-level of access to all of the vendor-specific hardware parts. One gets more well aligned instruments working at peak efficiency.

If the vendor must supply - a la carte - the control PC with its vendor-manufactured controlling boards, and does so at a price intended to convince the user of the advisability of purchasing a service contract, then any purchaser that doesn't understand the TCO concept has little chance of successfully managing down the total cost of ongoing service. If 5-10% of cost = annual cost of service, then any reasonable plan should likely conclude that a decade of use will mark the end of serviceability of even the most expensive microscope. i.e., If one has not found a reason (or wish) to upgrade an instrument in a decade, then one will have found a good reason to keep it running for another decade (in our historic view, that means running the control software today on a year 2000 PC with severe limitations on video, memory, CPU, etc. What are the prospects for a system that still runs on NT4 today, and will anyone agree that with such an instrument and no other prospects, the need for a service contract on such an instrument is more valuable than when it was new!

New prospect: If instrument leasing carried an advantage, then the lessor also would be paid for carrying the burden of service. TCO becomes something more manageable such as Total Cost of USE (TCU). The lessor and its customers determine the level of instrument 'quality' that is required, the Duration of Service (DOS) estimated by the lessee as well as the user base on which the lease is based. Lessors might even become regional providers in fixed locations for institutional users with 'spotty' requirements for use and associated services.

Finally, what would any reader of this message say to a donor who came bearing a FEI Titan as a gift? I think I know the question I would ask from the location of my office on the base of the pyramid before I could muster the courage to speak to my supervisor about the offer.

Cheers, and good luck to us all.

Fred Monson

Planning for the future is all well and good, but it is only based on what one knows of the past.

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl


-----Original Message-----
X-from: WHITTAKS-at-si.edu [mailto:WHITTAKS-at-si.edu]
Sent: Thursday, May 12, 2011 2:31 PM
To: Monson, Frederick

Ironically we just last week were informed of an exploratory committee being set up to address the rather substantial service contract costs the Institution pays annually with tax dollars drying up-and Jonathan- you were tops of my list to call on. One of the measures under exploration is the hiring of individuals to provide service onsite. I have not heard of a budget academic type EM facility that has made this model cost effective but would be interested in discussing this with anyone out there who has.


Just examining EM's, my Lab has 4 basic units from 3 different manufacturers all under continuous contract and if we include the rest of the machines in very close proximity we have 7 basic from 4. And the whole place 10 from 5. I would love to hear from anyone who is making onsite service in the absence of a contract work; in an academic type setting; with instruments from multiple manufacturers driven by relatively inexperienced users.

Thanks for any input,


Scott Whittaker
Chief NMNH Imaging
Manager SEM Lab
Smithsonian Institution
National Museum of Natural History
PO Box 37012   MRC104
Washington DC 20013-7012
202-633-0891

{} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {}

The SEM Lab move is complete and is now located in room EG13B. East Wing Ground floor.


-----Original Message-----
X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
Sent: Thursday, May 12, 2011 12:49 PM
To: Whittaker, Scott

Friends:

We are caught on the horns of a dilemma. For nearly forty years, Delta College has trained EM technicians for positions in academia and industry. For most of those forty years our instruments, now numbering 3 TEM's, 4, SEM's, an AFM and an FIB, have been covered by service contracts. Our instruments are used all day, every day for student training.

As you may have heard, funding for California schools is getting so tight that the bean counters are turning to drastic measures to make ends meet. Among pressures put on us is a requirement that we enroll at least 20 students/class, nearly impossible in our advanced, hand-on classes. In addition, the administration is now reluctant to authorize service contracts for our instruments.

Many or our microscopes are older and require more repairs due to their constant use as training instruments. We have received good service from our scope vendor, but it is expensive, mostly because we have so many instruments. The admin. people only look at the bottom line and when they see the big number, they go ballistic.

We are afraid that if we drop our current service contracts that the manufacturer will not pick them up if we want to come back after a year off their service. We are afraid that if we go to pay as you go with the manufacturer, we will be low in their priority list, something not good with so many students depending on microscope time to finish projects. We are afraid that if we can find a cheaper, independent service provider, parts will be hard to get and the price of the parts would be in addition to the cost of the service agreement, whereas parts are included in our current contracts.

This is getting long. Bottom line is we are asking for any advice or suggestions about how to approach this. I have heard all the horror stories about 3rd party insurance plans, etc. Are those stories true? Is it true that vendors move you to the bottom of the list without a contract? What is your experience if ever faced by this kind of situation? What kind of strategy has worked, or not?

Hoping for a miracle,

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: bozzola-at-siu.edu
Date: Fri, 13 May 2011 10:53:28 -0500
Subject: [Microscopy] EDS: Oxford Link Setup

Contents Retrieved from Microscopy Listserver Archives
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A colleague at our institution is setting up his donated FE SEM and
EDS system and needs an instruction manual.

Specifically, he has an Oxford Instruments EDS detector linked to Link
XP3 pulse processor (TMXP3) working in conjunction with 4PI board and
DTSA software.

So, he needs a technical manual describing how to set up the detector
with the Link XP3 controller. Any help would be appreciated.

Thank you

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: William.F.Tivol-at-aero.org
Date: Fri, 13 May 2011 12:50:37 -0500
Subject: [Microscopy] Determining CBED poles

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Dear Listers,

I am at NIH in Bethesda, MD and work with two TEMs from JEOL and a Hitachi SEM in our EM Core Facility. I believe that I can speak to the beginning of Fred's remarks. Our vendor service engineers work at different locations although as is the case with most companies that I have been familiar with, they tend to send the closest man and the ones who are most familiar with my scopes.

There are many scopes from several different companies on campus so it may seem that one person is dedicated to work on our scopes but this is not true as far as I know.

Pat
Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.




________________________________
X-from: {FMonson-at-wcupa.edu}
Reply-To: {FMonson-at-wcupa.edu}

Dear List,
I have about a dozen CBED patterns obtained from the same specimen
at different orientations, and I need to determine the zone axes and
reflections. The specimen is too thick to use the method of constructing
Kikuchi maps outlined in Williams and Carter. For many of the patterns I
was able to find a reflection in the [110] pattern that is the same in the
unknown pattern, and I could simulate various possibilities for the pole
of the unknown pattern and compare these to the observed pattern. However,
there are still a few patterns that are ambiguous, and for my best guesses
the spot in the [110] that is expected to match is very high order and
doesn't appear in either pattern. Can anyone point me to a better
reference than Williams and Carter (if such exists), or give me other
words of wisdom? TIA.
Yours,
Bill

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 13 May 2011 17:29:33 -0500
Subject: [Microscopy] viaWWW:TEM: Large UPS systems - stray fields?

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Email: drg.mitchell-at-sydney.edu.au Name: David Mitchell

Organization: ACMM/University of Sydney

Title-Subject: [Filtered] TEM: Large UPS systems - stray fields?

Message: Dear Listers

I am considering installing an inverter type UPS to keep my FEG TEM
running during power outages/blips and to provide it with clean power.
My options for locating the UPS and battery stack are limited. I
obviously want it located as far from the microscope as possible and
plan on putting it in the plant room for the microscope, adjacent to the
lens/ion pump power supplies.
Does anyone have any experience with, or advice on, potential
interference issues between UPSs and TEM systems?

Thanks and regards,

Dave Mitchell


Dr David Mitchell
Senior Microscopist, TEM Manager

Contact:
PH +61 2 9036 7633
FAX +61 2 9351 7682
drg.mitchell-at-sydney.edu.au
Address:
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Incorporating:
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Excellence for Design in Light Metals
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The University of Sydney
NSW, 2006, Australia
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 13 May 2011 17:31:25 -0500
Subject: [Microscopy] viaWWW:service contracts

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Email: michael.cammer-at-med.nyu.edu Name: Michael Cammer

Organization: Skirball Institute of Biomolecular Medicine

Title-Subject: [Filtered] service contracts

Message: Universities make money from grants, but research is a low
margin business, and thus the pressure on service contract expenses.
The service contracts on the clinical instruments are not under such
pressure; being down for even hours can seriously cut into billings.

Getting grants requires steady publications and publications require
reliable high tech equipment. (Novelty sells.) Therefore, service
contracts are a necessary capital expense. Administrators need to
understand that to protect both the brand of the university as cutting
edge and to raise capital, the expense of maintenance fees is essential.
This is a simple business decision.

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From: William.F.Tivol-at-aero.org
Date: 05/13/2011 03:40 PM
Subject: [Microscopy] viaWWW:TEM: Large UPS systems - stray fields?

Contents Retrieved from Microscopy Listserver Archives
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Dear Dave,
The UPS attached to the FEI Polara FEG TEM at Caltech was located
in an adjacent room, ~10 m from the scope. The Haskris coolers, air
compressors, and some of the electronics were also in this room. We saw
no interference from the UPS.
Yours,
Bill



X-from: microscopylistserver-noreply-at-microscopy.com
To: William.F.Tivol-at-aero.org






Email: drg.mitchell-at-sydney.edu.au Name: David Mitchell

Organization: ACMM/University of Sydney

Title-Subject: [Filtered] TEM: Large UPS systems - stray fields?

Message: Dear Listers

I am considering installing an inverter type UPS to keep my FEG TEM
running during power outages/blips and to provide it with clean power.
My options for locating the UPS and battery stack are limited. I
obviously want it located as far from the microscope as possible and
plan on putting it in the plant room for the microscope, adjacent to the
lens/ion pump power supplies.
Does anyone have any experience with, or advice on, potential
interference issues between UPSs and TEM systems?

Thanks and regards,

Dave Mitchell


==============================Original Headers==============================
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From: John.Mardinly-at-asu.edu
Date: Fri, 13 May 2011 18:40:51 -0500
Subject: [Microscopy] viaWWW:TEM: Large UPS systems - stray fields?

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The Phase One UPS I had on my 2010F at Intel had a requirement from JEOL
that it be at least 20 feet away from the microscope. I measured 35
milligauss coming out of that thing. We kept it 50 feet from the
microscope. The new lab at ASU has the UPS located in the attic at the
far end of the building, and there is extensive shielding between the
UPS and the microscopes. You definitely want the UPS as far from your
column as possible.

A. John Mardinly,
ASU

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Email: drg.mitchell-at-sydney.edu.au Name: David Mitchell

Organization: ACMM/University of Sydney

Title-Subject: [Filtered] TEM: Large UPS systems - stray fields?

Message: Dear Listers

I am considering installing an inverter type UPS to keep my FEG TEM
running during power outages/blips and to provide it with clean power.
My options for locating the UPS and battery stack are limited. I
obviously want it located as far from the microscope as possible and
plan on putting it in the plant room for the microscope, adjacent to the

lens/ion pump power supplies.
Does anyone have any experience with, or advice on, potential
interference issues between UPSs and TEM systems?

Thanks and regards,

Dave Mitchell


Dr David Mitchell
Senior Microscopist, TEM Manager

Contact:
PH +61 2 9036 7633
FAX +61 2 9351 7682
drg.mitchell-at-sydney.edu.au
Address:
Australian Centre for Microscopy & Microanalysis
Incorporating:
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Excellence for Design in Light Metals
Madsen Building F09, Room 128A
The University of Sydney
NSW, 2006, Australia
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From: kraftpiano-at-gmail.com
Date: Sat, 14 May 2011 17:20:12 -0500
Subject: [Microscopy] SEM preparation of yogurt bacteria?

Contents Retrieved from Microscopy Listserver Archives
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The fields fall off with the distance squared. I would put it as far away as reasonably possible, but I would not get too heroic about it unless it would putting it any closer would put you out of spec. I would think the UPS manufacturers are aware that some of their units will be used with sensitive equipment and they would offer a well shielded system. Of course they may charge extra for that shielding.

Warren Straszheim

-----Original Message-----
X-from: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Friday, May 13, 2011 5:30 PM
To: wesaia-at-iastate.edu

Does anyone have a protocol for going from straight-from-the-store yogurt to prepared SEM specimen? I have a student interested in seeing what the bacteria looks like. They are also trying to find out just how much of yogurt is, in fact, bacteria. Not being a biologist, I'm at a bit of a loss...

--Justin A. Kraft

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 15 May 2011 15:51:54 -0500
Subject: [Microscopy] viaWWW:JEM 1200EX

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Email: mjwanzek-at-gmail.com Name: Mike

Organization: Washington State University

Title-Subject: [Filtered] JEM 1200EX

Message: I purchased a JEM 1200EX TEM microscope from a university
surplus auction. I don't know much about electron microscopes, and I
listed it on Ebay for $5000 (just go to ebay and search "jem 1200ex").

Anyways, I got a quesion asking if it has a "high angle detector". I
don't know what this is, and I couldn't find out from some googling, so
does anyone know what this is, where it is located, and what it looks like?

Also, who would you expect would be interested in an auction like this?
Do you think universities or companies, would be interested, or mainly
people who just want an electron microscope that they can set up in
their house? Thanks.
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From: nizets2-at-yahoo.com
Date: Mon, 16 May 2011 03:39:53 -0500
Subject: [Microscopy] [spam]* Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Basically what you are saying is that people with more money are happier.
This is quite an evidence, isn't it?
I don't think people leave a service contract when they don't have to.

Regards,

Stephane



----- Original Message ----
X-from: "kenconverse-at-qualityimages.biz" {kenconverse-at-qualityimages.biz}
To: nizets2-at-yahoo.com
Sent: Fri, May 13, 2011 3:25:39 PM

Valery,
Very well stated.  The only thing I might add is that the customer with a
service contract is guaranteed certain things, such as preventive
maintenance, operation to specification, perhaps even guaranteed maximum
down-time.  The one-off customer has none of this.  The service organization
is contractually bound to the contract customer.  Period.  Yes, the one off
cash is nice, but the regular customers are far more valuable in the long
run.  They often are happier customer, also.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME  04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Friday, May 13, 2011 8:59 AM
To: kenconverse-at-qualityimages.biz

Dave's message below compelled me to explain a difference between
service contract and one-off service call from the vendor's perspective.

For most of FIB/SEM equipment service providers, both small and large,
equipment service is a business activity; it must be profitable or could
not continue. Delivering service and making it possible also costs
money: most of users do not realize how enormous are the aggregated
expenses of labor, travel, sourcing parts, re-designing or substituting
obsolete components, warehousing, bean counting, etc...

When you buy a service contract from the certain provider, it not just
gives you reliable support with predictable response time, but also
gives that service organization reliable stream of revenue and
predictable work load. Stability allows to plan and structure business,
retain and maintain necessary resources, source and stock parts, etc.

If customer goes off service contract then situation becomes completely
unpredictable: he/she may call in for service, but also may do
self-service, hire internal service person, or do whatever else. In such
situation managers of the service organization have no other choice but
to prepare for the worse and assume that there will be no service calls
from this customer. To insure survival of the organization, cost-saving
measures follow immediately: engineers are laid off, facilities are
closed or downsized, parts are not procured and not stored, and so
forth. These measures are inevitable - otherwise service organization
simply could not continue to exist. Reduced resources will usually be
matched to the needs of contract-paying customers, with little to no
spare capacity.

When odd service call comes from the customer without the service
contract, it is treated as such - one-off, single-case business, which
may never return. Yes, it is nice to get some extra revenue, but
(already reduced) resources of engineering time and parts will be given
to this call only if and when all the needs of service-contract
customers are taken care of, and not a split second earlier.

The bottom line is that service organization simply can't provide more
service then what it paid for, and overall level of service users
receive will always degrade in one way or another, as the service
revenue decreases.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 5/13/2011 5:59 AM, David.Patton-at-uwe.ac.uk wrote:
}
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} We went off contract last year and had to wait over 4 months for  a
service.  The engineer said that if it had been a breakdown the delay would
have been the same.
}
} Dave
}
} -----Original Message-----
} X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
} Sent: 12 May 2011 17:50
} To: David Patton
} Subject: [spam]* [Microscopy] Microscope service strategies
}
}
}
}
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} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta
College has trained EM technicians for positions in academia and industry.
For most of those forty years our instruments, now numbering 3 TEM's, 4,
SEM's, an AFM and an FIB, have been covered by service contracts. Our
instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so tight
that the bean counters are turning to drastic measures to make ends meet.
Among pressures put on us is a requirement that we enroll at least 20
students/class, nearly impossible in our advanced, hand-on classes. In
addition, the administration is now reluctant to authorize service contracts
for our instruments.
}
} Many or our microscopes are older and require more repairs due to their
constant use as training instruments. We have received good service from our
scope vendor, but it is expensive, mostly because we have so many
instruments. The admin. people only look at the bottom line and when they
see the big number, they go ballistic.
}
} We are afraid that if we drop our current service contracts that the
manufacturer will not pick them up if we want to come back after a year off
their service. We are afraid that if we go to pay as you go with the
manufacturer, we will be low in their priority list, something not good with
so many students depending on microscope time to finish projects. We are
afraid that if we can find a cheaper, independent service provider, parts
will be hard to get and the price of the parts would be in addition to the
cost of the service agreement, whereas parts are included in our current
contracts.
}
} This is getting long. Bottom line is we are asking for any advice or
suggestions about how to approach this. I have heard all the horror stories
about 3rd party insurance plans, etc. Are those stories true? Is it true
that vendors move you to the bottom of the list without a contract? What is
your experience if ever faced by this kind of situation? What kind of
strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA  95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
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35, 50 -- Subject: Re: [Microscopy] RE: [spam]* Microscope service strategies
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 16 May 2011 07:31:23 -0500
Subject: [Microscopy] viaWWW: JEOL film casette

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: cserhati-at-delfin.unideb.hu Name: Csaba Cserháti

Organization: University of Debrecen

Title-Subject: [Filtered] film casette

Message: Dear Collegaues,
I am looking for film casettes for JEOL TEM for the following film size:
99.6 x 80.9 mm (4"x3 1/4").
It would be nice if there were some second-hand ones.

Csaba Cserháti

Login Host: 193.6.180.3
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 16 May 2011 07:33:01 -0500
Subject: [Microscopy] viaWWW:Remote and in-situ microscopy workshop

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Email: degraef-at-cmu.edu Name: Marc De Graef

Organization: Carnegie Mellon University

Title-Subject: [Filtered] Remote and in-situ microscopy workshop

Message: Dear colleague,

On June 6-8, 2011, the Third International Workshop on Remote Electron
Microscopy and In-Situ Studies will take place at Carnegie Mellon
University,
Pittsburgh, PA. On behalf of my co-organizers, I would like to invite you
to consider attending this workshop. We have a truly outstanding group
of invited speakers:

Amanda Petford-Long (ANL), Angus Wilkinson (Oxford), Eric Stach (BNL),
Angus Kirkland (Oxford), Peter Crozier (ASU), Katayun Barmak (CMU),
Robert Sinclair (Stanford), Judith Yang (U. Pittsburgh), John Mansfield
(U. Michigan),
Alejandro Zúñiga (U. Chile), Paulo Ferreira (U. Texas), Michael Uchic
(WPAFB),
Prakash Palanisamy (U. Virginia), Phil Batson (Rutgers U.), Eva Olsson
(Chalmers U.),
Uli Dahmen (LBL), Frans Tichelaar (Delft U. Tech.), Ian Robertson (U.
Illinois),
Vicente Garibay (U. Mexico), Andrew Minor (UCBerkeley), Jan Rignalda (FEI),
Steven Mick (ProtoChips), Pushkarraj Deshmukh (Fishione), ...

and the Plenary Talk will be given by Dr. Peter Swann.

Information on the workshop, including the scientific program, can be
found at the following URL:

http://mpg.web.cmu.edu/CMU-IWREMISS-2011.html

[please note that the presentation abstract will pop up when you hover
the mouse over the letter A that precedes each presentation title.]

Registration is free (first-come, first-serve), and hotel and travel
information can be found on the web site.

We are looking forward to seeing you at the workshop in June!


With kind regards,

Marc De Graef
Tom Nuhfer
Robert Sinclair
Richard Chin


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From: kenconverse-at-qualityimages.biz
Date: Mon, 16 May 2011 08:55:24 -0500
Subject: [Microscopy] [spam]* Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Stephane,
No, what I'm saying is that some people are happier because of HOW they
spend their money.

To start with some of the more obvious places:

If the system is down because service is not readily available then A) your
students and researchers are not able to do what is required/needed in a
timely manner, B) you need to send your work out to another lab and pay by
the hour to use their systems or, C) your customers take their work
elsewhere (to a competitor) to be done on a timely basis. Even the bean
counters can see some of the costs involved here, although they are likely
to "overlook" at least some of them.

There are some less obvious costs, also:

A) You bought a system with 3.5nm resolution but through many little
problems (death through a thousand tiny cuts) that have accumulated over
time, it will only produce 20nm resolution. First, you may not be able to
do the work that needs to be done, resulting in similar expenses to above.
Second, if your response is, "I don't need better than 20nm resolution for
my work" then a considerable amount of money was wasted in the original
purchase. B) Productivity goes down because the people using the system
(whether "tool operator" or "microscopist") know it doesn't operate properly
and become discouraged.

The people with the service contract are happier because they don't have to
constantly worry about their system. They are confident that it will remain
operating up to spec. The people without the service contract may actually
be spending as much money, if not more, but the amounts aren't always
obvious. In addition, they have to constantly worry whether or not their
system is going to be able to do the work that needs to be done. That's why
they are less likely to be happy.

The benefits of service contracts are not entirely obvious and this shows
very clearly in scientific grants. It's not all that difficult to get
someone to give a lot of money for a building that will have their name on
it. It may be even easier to get someone to give money for a fancy state of
the art piece of equipment that will have a bronze plaque on it. There are
no bronze plaques adorning service contracts, hence grant money for such
unseen things is more difficult to come by. Is it of less importance? I
have my opinion on that. Others have different opinions.

X-from your many posts, it appears that you have the necessary skills (and
time) to keep your system running to spec. Congratulations! In my
experience you are in the minority. I admire people who really get deeply
into their equipment (I'm like them), but others get deeply into other
aspects of their jobs and view the equipment as a fancy hammer or
screwdriver that they know how to use, but not necessarily repair or
maintain. They are not better or worse, just different (as my kids were
told before going on Rotary Youth Exchange). There are many things that I
don't repair because someone else has more expertise, the tools and the
parts to do it more efficiently than I can.

It's about HOW you spend your money, not that you have more.

Sincerely,
Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Monday, May 16, 2011 4:43 AM
To: kenconverse-at-qualityimages.biz

Basically what you are saying is that people with more money are happier.
This is quite an evidence, isn't it?
I don't think people leave a service contract when they don't have to.

Regards,

Stephane



----- Original Message ----
X-from: "kenconverse-at-qualityimages.biz" {kenconverse-at-qualityimages.biz}
To: nizets2-at-yahoo.com
Sent: Fri, May 13, 2011 3:25:39 PM

Valery,
Very well stated.  The only thing I might add is that the customer with a
service contract is guaranteed certain things, such as preventive
maintenance, operation to specification, perhaps even guaranteed maximum
down-time.  The one-off customer has none of this.  The service organization
is contractually bound to the contract customer.  Period.  Yes, the one off
cash is nice, but the regular customers are far more valuable in the long
run.  They often are happier customer, also.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME  04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Friday, May 13, 2011 8:59 AM
To: kenconverse-at-qualityimages.biz

Dave's message below compelled me to explain a difference between
service contract and one-off service call from the vendor's perspective.

For most of FIB/SEM equipment service providers, both small and large,
equipment service is a business activity; it must be profitable or could
not continue. Delivering service and making it possible also costs
money: most of users do not realize how enormous are the aggregated
expenses of labor, travel, sourcing parts, re-designing or substituting
obsolete components, warehousing, bean counting, etc...

When you buy a service contract from the certain provider, it not just
gives you reliable support with predictable response time, but also
gives that service organization reliable stream of revenue and
predictable work load. Stability allows to plan and structure business,
retain and maintain necessary resources, source and stock parts, etc.

If customer goes off service contract then situation becomes completely
unpredictable: he/she may call in for service, but also may do
self-service, hire internal service person, or do whatever else. In such
situation managers of the service organization have no other choice but
to prepare for the worse and assume that there will be no service calls
from this customer. To insure survival of the organization, cost-saving
measures follow immediately: engineers are laid off, facilities are
closed or downsized, parts are not procured and not stored, and so
forth. These measures are inevitable - otherwise service organization
simply could not continue to exist. Reduced resources will usually be
matched to the needs of contract-paying customers, with little to no
spare capacity.

When odd service call comes from the customer without the service
contract, it is treated as such - one-off, single-case business, which
may never return. Yes, it is nice to get some extra revenue, but
(already reduced) resources of engineering time and parts will be given
to this call only if and when all the needs of service-contract
customers are taken care of, and not a split second earlier.

The bottom line is that service organization simply can't provide more
service then what it paid for, and overall level of service users
receive will always degrade in one way or another, as the service
revenue decreases.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 5/13/2011 5:59 AM, David.Patton-at-uwe.ac.uk wrote:
}
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} We went off contract last year and had to wait over 4 months for  a
service.  The engineer said that if it had been a breakdown the delay would
have been the same.
}
} Dave
}
} -----Original Message-----
} X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
} Sent: 12 May 2011 17:50
} To: David Patton
} Subject: [spam]* [Microscopy] Microscope service strategies
}
}
}
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} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta
College has trained EM technicians for positions in academia and industry.
For most of those forty years our instruments, now numbering 3 TEM's, 4,
SEM's, an AFM and an FIB, have been covered by service contracts. Our
instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so tight
that the bean counters are turning to drastic measures to make ends meet.
Among pressures put on us is a requirement that we enroll at least 20
students/class, nearly impossible in our advanced, hand-on classes. In
addition, the administration is now reluctant to authorize service contracts
for our instruments.
}
} Many or our microscopes are older and require more repairs due to their
constant use as training instruments. We have received good service from our
scope vendor, but it is expensive, mostly because we have so many
instruments. The admin. people only look at the bottom line and when they
see the big number, they go ballistic.
}
} We are afraid that if we drop our current service contracts that the
manufacturer will not pick them up if we want to come back after a year off
their service. We are afraid that if we go to pay as you go with the
manufacturer, we will be low in their priority list, something not good with
so many students depending on microscope time to finish projects. We are
afraid that if we can find a cheaper, independent service provider, parts
will be hard to get and the price of the parts would be in addition to the
cost of the service agreement, whereas parts are included in our current
contracts.
}
} This is getting long. Bottom line is we are asking for any advice or
suggestions about how to approach this. I have heard all the horror stories
about 3rd party insurance plans, etc. Are those stories true? Is it true
that vendors move you to the bottom of the list without a contract? What is
your experience if ever faced by this kind of situation? What kind of
strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA  95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
}
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9, 46 -- Subject: Re: [Microscopy] RE: [spam]* Microscope service strategies
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35, 50 -- Date: Mon, 16 May 2011 01:39:51 -0700 (PDT)
35, 50 -- From: Stephane Nizet {nizets2-at-yahoo.com}
35, 50 -- Subject: Re: [Microscopy] RE: [spam]* Microscope service
strategies
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54, 28 -- From kenconverse-at-qualityimages.biz Mon May 16 08:55:24 2011
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From: travisj25-at-gmail.com
Date: Mon, 16 May 2011 10:26:20 -0500
Subject: [Microscopy] EDS SiPin Detector

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A SiPin detector is being used on a vacuum chamber equipped with a
cold cathode discharge electron gun. Occasionally there are
"cut-outs".Apparently some of the electrical noise in the cold cathode
discharge is being picked up by the detector and it is sufficient to
trigger it off.

All the usual things like rearranging grounds, running with surge
suppressors, running the computer from the battery only, etc., have
been tried and make very little difference. We have even used a
separately powered USB Hub with no improvement. What is notable is
that with an older Dell Inspiron the problem is much less than with a
brand new Dell Inspiron.

Any suggestions would be welcomed

--
Travis Johnson
Bedford MA

==============================Original Headers==============================
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4, 30 -- Subject: EDS SiPin Detector
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==============================End of - Headers==============================




From: raharris-at-ucdavis.edu
Date: Mon, 16 May 2011 12:28:26 -0500
Subject: [Microscopy] [spam]* Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I have been following this thread intermittently so I do not know if what I am suggesting has been mentioned. Also, it is a little off topic so please forgive me; I am not trying to high-jack the thread but just to insert a comment. In my experience, if the administration of your school or university is looking for a way to indirectly close down a program, this is one of the strategies they will use. I have seen it happen many times at the university where I have worked since 1979.

Good luck,

Rick A. Harris






______________________________________
X-from: nizets2-at-yahoo.com [nizets2-at-yahoo.com]
Sent: Monday, May 16, 2011 1:43 AM
To: Rick A Harris

Basically what you are saying is that people with more money are happier.
This is quite an evidence, isn't it?
I don't think people leave a service contract when they don't have to.

Regards,

Stephane



----- Original Message ----
X-from: "kenconverse-at-qualityimages.biz" {kenconverse-at-qualityimages.biz}
To: nizets2-at-yahoo.com
Sent: Fri, May 13, 2011 3:25:39 PM

Valery,
Very well stated. The only thing I might add is that the customer with a
service contract is guaranteed certain things, such as preventive
maintenance, operation to specification, perhaps even guaranteed maximum
down-time. The one-off customer has none of this. The service organization
is contractually bound to the contract customer. Period. Yes, the one off
cash is nice, but the regular customers are far more valuable in the long
run. They often are happier customer, also.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Friday, May 13, 2011 8:59 AM
To: kenconverse-at-qualityimages.biz

Dave's message below compelled me to explain a difference between
service contract and one-off service call from the vendor's perspective.

For most of FIB/SEM equipment service providers, both small and large,
equipment service is a business activity; it must be profitable or could
not continue. Delivering service and making it possible also costs
money: most of users do not realize how enormous are the aggregated
expenses of labor, travel, sourcing parts, re-designing or substituting
obsolete components, warehousing, bean counting, etc...

When you buy a service contract from the certain provider, it not just
gives you reliable support with predictable response time, but also
gives that service organization reliable stream of revenue and
predictable work load. Stability allows to plan and structure business,
retain and maintain necessary resources, source and stock parts, etc.

If customer goes off service contract then situation becomes completely
unpredictable: he/she may call in for service, but also may do
self-service, hire internal service person, or do whatever else. In such
situation managers of the service organization have no other choice but
to prepare for the worse and assume that there will be no service calls
from this customer. To insure survival of the organization, cost-saving
measures follow immediately: engineers are laid off, facilities are
closed or downsized, parts are not procured and not stored, and so
forth. These measures are inevitable - otherwise service organization
simply could not continue to exist. Reduced resources will usually be
matched to the needs of contract-paying customers, with little to no
spare capacity.

When odd service call comes from the customer without the service
contract, it is treated as such - one-off, single-case business, which
may never return. Yes, it is nice to get some extra revenue, but
(already reduced) resources of engineering time and parts will be given
to this call only if and when all the needs of service-contract
customers are taken care of, and not a split second earlier.

The bottom line is that service organization simply can't provide more
service then what it paid for, and overall level of service users
receive will always degrade in one way or another, as the service
revenue decreases.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 5/13/2011 5:59 AM, David.Patton-at-uwe.ac.uk wrote:
}
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} We went off contract last year and had to wait over 4 months for a
service. The engineer said that if it had been a breakdown the delay would
have been the same.
}
} Dave
}
} -----Original Message-----
} X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
} Sent: 12 May 2011 17:50
} To: David Patton
} Subject: [spam]* [Microscopy] Microscope service strategies
}
}
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} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta
College has trained EM technicians for positions in academia and industry.
For most of those forty years our instruments, now numbering 3 TEM's, 4,
SEM's, an AFM and an FIB, have been covered by service contracts. Our
instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so tight
that the bean counters are turning to drastic measures to make ends meet.
Among pressures put on us is a requirement that we enroll at least 20
students/class, nearly impossible in our advanced, hand-on classes. In
addition, the administration is now reluctant to authorize service contracts
for our instruments.
}
} Many or our microscopes are older and require more repairs due to their
constant use as training instruments. We have received good service from our
scope vendor, but it is expensive, mostly because we have so many
instruments. The admin. people only look at the bottom line and when they
see the big number, they go ballistic.
}
} We are afraid that if we drop our current service contracts that the
manufacturer will not pick them up if we want to come back after a year off
their service. We are afraid that if we go to pay as you go with the
manufacturer, we will be low in their priority list, something not good with
so many students depending on microscope time to finish projects. We are
afraid that if we can find a cheaper, independent service provider, parts
will be hard to get and the price of the parts would be in addition to the
cost of the service agreement, whereas parts are included in our current
contracts.
}
} This is getting long. Bottom line is we are asking for any advice or
suggestions about how to approach this. I have heard all the horror stories
about 3rd party insurance plans, etc. Are those stories true? Is it true
that vendors move you to the bottom of the list without a contract? What is
your experience if ever faced by this kind of situation? What kind of
strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
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From: William.F.Tivol-at-aero.org
Date: 05/14/2011 03:33 PM
Subject: [Microscopy] SEM preparation of yogurt bacteria?

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Dear Justin,
I have no experience with preparing SEM specimens, but be sure
your student gets a yogurt advertised as containing live culture.
Otherwise, there would possibly be no bacteria to see. It will be
essential to dilute out the remains of the milk solids, etc., to get a
good look at the bacteria, and it might be a good idea to take a bit of
yogurt and prepare a lactose solution to grow the bacteria in. Just put
the yogurt into the solution, place in a warm room or oven at ~37 C, and
wait overnight to harvest the bacteria. Lactose solution can be
centrifuged at relatively low speed to concentrate the bacteria for the
prep.
Yours,
Bill



X-from: kraftpiano-at-gmail.com
To: William.F.Tivol-at-aero.org



Does anyone have a protocol for going from straight-from-the-store yogurt
to prepared SEM specimen? I have a student interested in seeing what the
bacteria looks like. They are also trying to find out just how much of
yogurt is, in fact, bacteria. Not being a biologist, I'm at a bit of a
loss...

--Justin A. Kraft


==============================Original Headers==============================
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From: William.F.Tivol-at-aero.org
Date: 05/15/2011 02:02 PM
Subject: [Microscopy] viaWWW:JEM 1200EX

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Dear Mike,
A high-angle detector is for STEM mode. It is usually called a
high-angle annular dark-field or HAADF detector. It should look like a
large washer, more-or-less, with electrical connections attached. It
detects electrons that have been scattered through angles greater than ~50
mrad, according to Williams and Carter, page 359. This detector is
located below the specimen, but I don't know where it would be, exactly,
in the 1200EX, assuming that the 1200 EX has a STEM mode of operation.
Yours,
Bill



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To: William.F.Tivol-at-aero.org






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Email: mjwanzek-at-gmail.com Name: Mike

Organization: Washington State University

Title-Subject: [Filtered] JEM 1200EX

Message: I purchased a JEM 1200EX TEM microscope from a university
surplus auction. I don't know much about electron microscopes, and I
listed it on Ebay for $5000 (just go to ebay and search "jem 1200ex").

Anyways, I got a quesion asking if it has a "high angle detector". I
don't know what this is, and I couldn't find out from some googling, so
does anyone know what this is, where it is located, and what it looks
like?

Also, who would you expect would be interested in an auction like this?
Do you think universities or companies, would be interested, or mainly
people who just want an electron microscope that they can set up in
their house? Thanks.


==============================Original Headers==============================
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From: connellyps-at-nhlbi.nih.gov
Date: 05/14/2011 03:33 PM
Subject: [Microscopy] SEM preparation of yogurt bacteria?

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Justin,

I once ran up Colby cheese for TEM and the bacteria were beautiful. If you can interest the student into switching I'd suggest cutting thin strips of cheese then break them and run the sample up for SEM or after CPD snap the strip into two. I'd think the bacteria should be visible along the fractured surface.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.


________________________________
X-from: {William.F.Tivol-at-aero.org}
Reply-To: {William.F.Tivol-at-aero.org}



Does anyone have a protocol for going from straight-from-the-store yogurt
to prepared SEM specimen? I have a student interested in seeing what the
bacteria looks like. They are also trying to find out just how much of
yogurt is, in fact, bacteria. Not being a biologist, I'm at a bit of a
loss...

--Justin A. Kraft




==============================Original Headers==============================
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19, 28 -- Subject: Re: [Microscopy] Re: SEM preparation of yogurt bacteria?
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From: Christopher.Gilpin-at-utsouthwestern.edu
Date: Mon, 16 May 2011 14:16:55 -0500
Subject: [Microscopy] [spam]* Microscope service strategies

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All,
There is a new option that is floating around the University of Texas
system. An independent company has signed a deal with UT system to save
everyone 25% on their service contracts (not just EMs - a whole range of
equipment, as long as it is a parts and labor contract). They get you to
move to an "on demand" arrangement with your existing service provider. They
pay all the bills and take the chance that you will spend less than a full
price contract. Of course there is the issue with how service providers
prioritize contract versus on-demand customers. This company will freeze the
cost for 4 years and as part of the arrangement with UT system (with
qualifying contracts and equipment) will not decline coverage.

I am tempted but don't like the idea of having less priority when I make a
service call.

Regards

Chris


Christopher J Gilpin Ph.D.
Assistant Professor
Director, Molecular and Cellular Imaging Facility
K1.A04
UT Southwestern Medical Center at Dallas
5323 Harry Hines Boulevard
Dallas, TX 75390-9039
Phone +1 214 648 2827

-----Original Message-----
X-from: raharris-at-ucdavis.edu [mailto:raharris-at-ucdavis.edu]
Sent: Monday, May 16, 2011 12:38 PM
To: Christopher Gilpin

I have been following this thread intermittently so I do not know if what I
am suggesting has been mentioned. Also, it is a little off topic so please
forgive me; I am not trying to high-jack the thread but just to insert a
comment. In my experience, if the administration of your school or
university is looking for a way to indirectly close down a program, this is
one of the strategies they will use. I have seen it happen many times at
the university where I have worked since 1979.

Good luck,

Rick A. Harris






______________________________________
X-from: nizets2-at-yahoo.com [nizets2-at-yahoo.com]
Sent: Monday, May 16, 2011 1:43 AM
To: Rick A Harris

Basically what you are saying is that people with more money are happier.
This is quite an evidence, isn't it?
I don't think people leave a service contract when they don't have to.

Regards,

Stephane



----- Original Message ----
X-from: "kenconverse-at-qualityimages.biz" {kenconverse-at-qualityimages.biz}
To: nizets2-at-yahoo.com
Sent: Fri, May 13, 2011 3:25:39 PM

Valery,
Very well stated. The only thing I might add is that the customer with a
service contract is guaranteed certain things, such as preventive
maintenance, operation to specification, perhaps even guaranteed maximum
down-time. The one-off customer has none of this. The service organization
is contractually bound to the contract customer. Period. Yes, the one off
cash is nice, but the regular customers are far more valuable in the long
run. They often are happier customer, also.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Friday, May 13, 2011 8:59 AM
To: kenconverse-at-qualityimages.biz

Dave's message below compelled me to explain a difference between service
contract and one-off service call from the vendor's perspective.

For most of FIB/SEM equipment service providers, both small and large,
equipment service is a business activity; it must be profitable or could not
continue. Delivering service and making it possible also costs
money: most of users do not realize how enormous are the aggregated expenses
of labor, travel, sourcing parts, re-designing or substituting obsolete
components, warehousing, bean counting, etc...

When you buy a service contract from the certain provider, it not just gives
you reliable support with predictable response time, but also gives that
service organization reliable stream of revenue and predictable work load.
Stability allows to plan and structure business, retain and maintain
necessary resources, source and stock parts, etc.

If customer goes off service contract then situation becomes completely
unpredictable: he/she may call in for service, but also may do self-service,
hire internal service person, or do whatever else. In such situation
managers of the service organization have no other choice but to prepare for
the worse and assume that there will be no service calls from this customer.
To insure survival of the organization, cost-saving measures follow
immediately: engineers are laid off, facilities are closed or downsized,
parts are not procured and not stored, and so forth. These measures are
inevitable - otherwise service organization simply could not continue to
exist. Reduced resources will usually be matched to the needs of
contract-paying customers, with little to no spare capacity.

When odd service call comes from the customer without the service contract,
it is treated as such - one-off, single-case business, which may never
return. Yes, it is nice to get some extra revenue, but (already reduced)
resources of engineering time and parts will be given to this call only if
and when all the needs of service-contract customers are taken care of, and
not a split second earlier.

The bottom line is that service organization simply can't provide more
service then what it paid for, and overall level of service users receive
will always degrade in one way or another, as the service revenue decreases.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 5/13/2011 5:59 AM, David.Patton-at-uwe.ac.uk wrote:
}
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} We went off contract last year and had to wait over 4 months for a
service. The engineer said that if it had been a breakdown the delay would
have been the same.
}
} Dave
}
} -----Original Message-----
} X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
} Sent: 12 May 2011 17:50
} To: David Patton
} Subject: [spam]* [Microscopy] Microscope service strategies
}
}
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} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta
College has trained EM technicians for positions in academia and industry.
For most of those forty years our instruments, now numbering 3 TEM's, 4,
SEM's, an AFM and an FIB, have been covered by service contracts. Our
instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so
} tight
that the bean counters are turning to drastic measures to make ends meet.
Among pressures put on us is a requirement that we enroll at least 20
students/class, nearly impossible in our advanced, hand-on classes. In
addition, the administration is now reluctant to authorize service contracts
for our instruments.
}
} Many or our microscopes are older and require more repairs due to
} their
constant use as training instruments. We have received good service from our
scope vendor, but it is expensive, mostly because we have so many
instruments. The admin. people only look at the bottom line and when they
see the big number, they go ballistic.

}
} We are afraid that if we drop our current service contracts that the
manufacturer will not pick them up if we want to come back after a year off
their service. We are afraid that if we go to pay as you go with the
manufacturer, we will be low in their priority list, something not good with
so many students depending on microscope time to finish projects. We are
afraid that if we can find a cheaper, independent service provider, parts
will be hard to get and the price of the parts would be in addition to the
cost of the service agreement, whereas parts are included in our current
contracts.
}
} This is getting long. Bottom line is we are asking for any advice or
suggestions about how to approach this. I have heard all the horror stories
about 3rd party insurance plans, etc. Are those stories true? Is it true
that vendors move you to the bottom of the list without a contract? What is
your experience if ever faced by this kind of situation? What kind of
strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
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________________________________

UT Southwestern Medical Center
The future of medicine, today.


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From: colijn.1-at-osu.edu
Date: Mon, 16 May 2011 14:55:17 -0500
Subject: [Microscopy] viaWWW:JEM 1200EX

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi guys,

While I think Bill is right in answering your question, there is another
possibility (somewhat remote) about the "high-angle" detector. Some of
the older JEOL scopes also had a "high-angle" EDX detector with ~68 deg.
elevation angle. Our old 200CX had a detector like this and I think
that the "EX" series scopes had the large-bore upper pole-piece and
could accommodate this EDX detector. At the time of these scopes, HAADF
was not as common a technique as now.

With that minor caveat, I agree with Bill that your potential buyer is
most likely interested in HAADF when he says "high-angle detector". In
your ebay photo, the cylinder on the left just above the viewing chamber
looks like a CCD type camera. This is where I would expect an HAADF
detector to be mounted.

Based on the age and type of scope, I would be surprised if your scope
had an HAADF detector.

Cheers,
Henk


At 5/16/2011 2:10 PM, William.F.Tivol-at-aero.org wrote:
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} Dear Mike,
} A high-angle detector is for STEM mode. It is usually called a
} high-angle annular dark-field or HAADF detector. It should look like a
} large washer, more-or-less, with electrical connections attached. It
} detects electrons that have been scattered through angles greater than ~50
} mrad, according to Williams and Carter, page 359. This detector is
} located below the specimen, but I don't know where it would be, exactly,
} in the 1200EX, assuming that the 1200 EX has a STEM mode of operation.
} Yours,
} Bill
}
}
}
} X-from: microscopylistserver-noreply-at-microscopy.com
} To: William.F.Tivol-at-aero.org
} Date: 05/15/2011 02:02 PM
} Subject: [Microscopy] viaWWW:JEM 1200EX
}
}
}
}
}
}
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} Email: mjwanzek-at-gmail.com Name: Mike
}
} Organization: Washington State University
}
} Title-Subject: [Filtered] JEM 1200EX
}
} Message: I purchased a JEM 1200EX TEM microscope from a university
} surplus auction. I don't know much about electron microscopes, and I
} listed it on Ebay for $5000 (just go to ebay and search "jem 1200ex").
}
} Anyways, I got a quesion asking if it has a "high angle detector". I
} don't know what this is, and I couldn't find out from some googling, so
} does anyone know what this is, where it is located, and what it looks
} like?
}
} Also, who would you expect would be interested in an auction like this?
} Do you think universities or companies, would be interested, or mainly
} people who just want an electron microscope that they can set up in
} their house? Thanks.
}
}
} ==============================Original Headers==============================
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--
Hendrik O. Colijn
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

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From: oshel1pe-at-cmich.edu
Date: Mon, 16 May 2011 14:57:01 -0500
Subject: [Microscopy] Re: FW: RE: [spam]* Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Chris,

Don't do it.
I dealt with a system like this back in my previous position. Worked
fine as long as we only did routine maintenance and a maybe a small
changing-out-a-part repair. But the first time we did something
unusual to them but perfectly normal for EM - tracing a stray EM
field - the company demanded we pay the full bill. Because they
don't pay for room tests. Didn't matter that the EMF test is routine
for diagnosing imaging problems, didn't matter that the test was a
minor part of the bill, didn't matter that ... etc. etc. .
Also didn't matter that I specifically asked them a series of "what
if" questions about what they covered - like the above - and their
answer was always "you're covered".
We got back on an instrument vendor service contract and were much happier.

Now what I do is keep track of time-and-materials charges for any
repairs or maintenance and anytime some admin type thinks of dropping
the service contract, I show them the comparison: service contract
vs. time-and-materials (T&M). The contract has always been cheaper
for any year other than ones in which the instruments never needed
more than routine PMs. In more than one case, as someone mentioned
earlier, a single repair visit if charged as T&M would have cost } 2x
the annual price of a full-option service contract.

Mind, CMU generally is a believer in service contracts, unlike some
places I've been, so that helps, but it still is very useful to have
the contract cost vs. T&M cost comparison handy.

Phil

} All,
} There is a new option that is floating around the University of Texas
} system. An independent company has signed a deal with UT system to save
} everyone 25% on their service contracts (not just EMs - a whole range of
} equipment, as long as it is a parts and labor contract). They get you to
} move to an "on demand" arrangement with your existing service provider. They
} pay all the bills and take the chance that you will spend less than a full
} price contract. Of course there is the issue with how service providers
} prioritize contract versus on-demand customers. This company will freeze the
} cost for 4 years and as part of the arrangement with UT system (with
} qualifying contracts and equipment) will not decline coverage.
}
} I am tempted but don't like the idea of having less priority when I make a
} service call.
}
} Regards
}
} Chris
}
}
} Christopher J Gilpin Ph.D.
} Assistant Professor
} Director, Molecular and Cellular Imaging Facility
} K1.A04
} UT Southwestern Medical Center at Dallas
} 5323 Harry Hines Boulevard
} Dallas, TX 75390-9039
} Phone +1 214 648 2827

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: jrminter-at-rochester.rr.com
Date: Mon, 16 May 2011 16:15:05 -0500
Subject: [Microscopy] Re: Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Chris,

Our management was really enthusiastic about migrating to one of these insurance plans because of the promised savings. We have been under one for most instruments for five years. Despite initial skepticism on the part of the technical staff, it has worked well for some of the auxiliary prep equipment in the microscopy lab (such as ultramicrotomes) and for most of our division's analytical instrumentation. There have been a few significant issues with our electron microscopes that have caused us to migrate them back to vendor service. We have done this as we could demonstrate that it was cost effective for our instruments. Here are some issues to consider:

1. Read the fine print on the contract carefully. For example, in ours there was a provision excluding high voltage transformers that applied to high voltage tanks. Think about the financial exposure you will have if you have an arc that causes a problem in the tank that the vendor recommends replacing it. We had a close call. Happily, ours turned out to be the emission chamber, that was covered. The prospect of paying for a HV tank really frightened my division director.

2. Will the vendor take the insurance company PO directly? I am pretty sure at the current time none of the "big 3" EM companies will. Call the service manager for your scopes and ask. Think about all the extra costs and time involved in generating and getting approval for purchase orders for parts and labor for every service call and the paperwork for submitting for reimbursement and tracking that everything goes through.

3. Most vendors will not ship a part if they don't have a PO with sufficient value to cover it. Imagine that it is 4 pm and the engineer thinks they need 3 or 4 boards and a component or two to work on a particular problem the next day. In all likelihood they may only need 1 or 2 of them and will send the rest back, but can't tell until they get into the repair. Given the scenario in #2 above, what do you think the probability that the parts you need will make the FedEx cut off. If they don't, you now have an engineer who needs to bill time without the parts. Do you "eat" the labor costs so the engineer is there the next day when the parts come or let them go, not knowing when they can come back? This created MANY Mylanta moments for me.

4. Contract customers are usually higher in the queue than time-and-materials customers. This is business. You reward your loyal customers. What is the cost of waiting for the engineer?

Here is my recommendation: take the last 4 or 5 service calls on your scopes and get the prices for time and materials for your scopes. Work out the senarios under the insurance schemes looking at items 1-4 above. Crunch the numbers for your management.

At the end of the day, it all comes down to your management and a line from a Clint Eastwood movie: "Do you feel lucky?" I have seen the time and material costs for a single difficult service call reach 3-4X the contract price. Ask your boss how their boss would respond to one of these unplanned expenses. One of the key values of service contracts that MUST be considered is predictability of costs.

best regards,
John Minter


Christopher.Gilpin-at-utsouthwestern.edu wrote:
} All,
} There is a new option that is floating around the University of Texas
} system. An independent company has signed a deal with UT system to save
} everyone 25% on their service contracts (not just EMs - a whole range of
} equipment, as long as it is a parts and labor contract). They get you to
} move to an "on demand" arrangement with your existing service provider. They
} pay all the bills and take the chance that you will spend less than a full
} price contract. Of course there is the issue with how service providers
} prioritize contract versus on-demand customers. This company will freeze the
} cost for 4 years and as part of the arrangement with UT system (with
} qualifying contracts and equipment) will not decline coverage.
}
} I am tempted but don't like the idea of having less priority when I make a
} service call.



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From: Jan.Factor-at-purchase.edu
Date: Mon, 16 May 2011 19:00:21 -0500
Subject: [Microscopy] EM insurance experience

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I know the topic of insurance in place of manufacturer's service contract has come up before, and I have seen that discussion. I am interested to know if anyone has specific experience with the REMI Group insuring electron microscopes (or other high-tech equipment). Feel free to respond off-list (jan.factor-at-purchase.edu). If you would prefer to talk instead of write, you can call me (below) or send your phone number and I will gladly call you. Many thanks in advance.
--Best, Jan Factor

----------------------------------------------------------
Jan Robert Factor, Ph.D.
Professor of Biology
----------------------------------------------------------
Purchase College
State University of New York
735 Anderson Hill Rd.
Purchase, NY 10577
USA
----------------------------------------------------------
Office Tel: 914-251-6659
Office: 2016NS
Email: jan.factor-at-purchase.edu
----------------------------------------------------------



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From: rosemary.white-at-csiro.au
Date: Mon, 16 May 2011 20:58:34 -0500
Subject: [Microscopy] Re: Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear all,

Just to get some numbers here, how much is reasonable for a service
contract? 10% of original cost of the instrument? 15% of cost?

We have a service contract on one instrument (confocal) that was (10 years
ago) about 8% of original cost, now is about 10%. This is essentially a
full extended warranty, and includes an annual service visit, unlimited
emergency callouts and all replacement parts, even lasers are included.
It's been great. I don't think they have this type of contract for new
instruments, thoughŠ

However, for a new instrument (ESEM) from a different supplier, we were
quoted about 15% of the original cost for a contract with 2 annual
maintenance visits plus unlimited emergency callouts, but no coverage of
replacement parts. For 2 maintenance visits and 2 emergency callouts but
no parts the cost went down to about 8% of initial cost. The reason given
for the cost was that we had many breakdowns in the 12 month warranty
period (2 mother boards, 3 different Peltier stages, 2 BSE detectors,
computer fan blew up, etc, etc), and they had to factor this in.
Considering the presumed reliability of SEMs compared to confocals (in my
experience before this new instrument), and that no parts were covered, it
seemed quite expensive.

Is the latter about what you'd expect to pay for a service contract?

Thanks,
Rosemary White

Dr Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
E rosemary.white-at-csiro.au






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From: nizets2-at-yahoo.com
Date: Tue, 17 May 2011 02:39:54 -0500
Subject: [Microscopy] Re: Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I find it funny that you have to pay because you had so many problems during the
first 12 monthes.
This means that in the end you paid because they bought an unreliable
instrument!
I wonder if you could not get an extension of the warranty period for such a
dramatic unreliability!

Regards,

Stephane

 


----- Original Message ----
X-from: "rosemary.white-at-csiro.au" {rosemary.white-at-csiro.au}
To: nizets2-at-yahoo.com
Sent: Tue, May 17, 2011 4:02:17 AM

Dear all,

Just to get some numbers here, how much is reasonable for a service
contract?  10% of original cost of the instrument?  15% of cost?

We have a service contract on one instrument (confocal) that was (10 years
ago) about 8% of original cost, now is about 10%.  This is essentially a
full extended warranty, and includes an annual service visit, unlimited
emergency callouts and all replacement parts, even lasers are included.
It's been great.  I don't think they have this type of contract for new
instruments, thoughÅ 

However, for a new instrument (ESEM) from a different supplier, we were
quoted about 15% of the original cost for a contract with 2 annual
maintenance visits plus unlimited emergency callouts, but no coverage of
replacement parts.  For 2 maintenance visits and 2 emergency callouts but
no parts the cost went down to about 8% of initial cost.  The reason given
for the cost was that we had many breakdowns in the 12 month warranty
period (2 mother boards, 3 different Peltier stages, 2 BSE detectors,
computer fan blew up, etc, etc), and they had to factor this in.
Considering the presumed reliability of SEMs compared to confocals (in my
experience before this new instrument), and that no parts were covered, it
seemed quite expensive.

Is the latter about what you'd expect to pay for a service contract?

Thanks,
Rosemary White

Dr Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
E rosemary.white-at-csiro.au






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From: Mark.Auty-at-teagasc.ie
Date: 05/14/2011 03:33 PM
Subject: [Microscopy] SEM preparation of yogurt bacteria?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Justin

There are several ways to do this depending on your time and type of
equipment available. Quickest would be to just smear some yoghurt on a
microscopy slide with a coverslip ontop and observe using good old
fashioned light microscopy (DIC can give nice images here).

For SEM:

a) Just spread (thinly) on a stub and air dry - can be surprisingly
effective but the coagulated milk may obscure many of the bugs.
b) Use a traditional wet fixation and solvent dehydration - search
"Kalab" for protocols (lots of papers from 1970's & 80's) which are
modifications of typical glut/os fixation used in biology. Then
sequential ethanol dehydration from 30 - 100%, followed by air drying or
CPD via acetone. Dried pieces (2 - 3 mm cubed) can be fractured and
mounted on a stub with carbon cement.
c) Use cryo-SEM if possible as this gives the best preservation. I can
send you an image or two showing the bacteria using this technique.

If you just want to see the bugs then a 1:1 dilution with water followed
by mixing & gentle centrifugation will separate the milk solids, leaving
bacteria suspended in the supernatant which can then be filtered.

Most half-decent fresh yoghurts should be teeming with bugs - choose a
probiotic yoghurt to make sure as they require } 10exp9 viable
organisms/g to be considered probiotic. You should see mixtures of long
bacilli and short rods/cocci within a network of protein aggregates.

Regards
Mark

Dr Mark A.E. Auty
Manager, National Food Imaging Centre
Food Chemistry and Technology Department
Teagasc Food Research Centre
Moorepark,Fermoy, Co. Cork, Ireland

tel: +353 25 42442
fax: +353 25 42340
mark.auty-at-teagasc.ie

28th & 29th September 2011
website: teagasc.ie/events/2011/cheese_symposium
email: cheesesymposium2011-at-teagasc.ie




-----Original Message-----
X-from: connellyps-at-nhlbi.nih.gov [mailto:connellyps-at-nhlbi.nih.gov]
Sent: 16 May 2011 20:01
To: Mark Auty

Justin,

I once ran up Colby cheese for TEM and the bacteria were beautiful. If
you can interest the student into switching I'd suggest cutting thin
strips of cheese then break them and run the sample up for SEM or after
CPD snap the strip into two. I'd think the bacteria should be visible
along the fractured surface.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not
represent the NIH. This message is not confidential and can be freely
shared and reproduced.


________________________________
X-from: {William.F.Tivol-at-aero.org}
Reply-To: {William.F.Tivol-at-aero.org}



Does anyone have a protocol for going from straight-from-the-store
yogurt
to prepared SEM specimen? I have a student interested in seeing what
the
bacteria looks like. They are also trying to find out just how much of
yogurt is, in fact, bacteria. Not being a biologist, I'm at a bit of a
loss...

--Justin A. Kraft




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38, 27 -- From Mark.Auty-at-teagasc.ie Tue May 17 04:18:28 2011
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From: kenconverse-at-qualityimages.biz
Date: Tue, 17 May 2011 07:59:16 -0500
Subject: [Microscopy] Re: Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html
by ns.microscopy.com (8.12.11.20060308/8.12.8) with ESMTP id p4HCxGYT012449
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Tue, 17 May 2011 07:59:16 -0500

Hi Rosemary,
Your confocal sounds about right, although with only about a 25% increase
over 10 years, I think you can count your blessings.

As for your ESEM, I should think the terms should look very much like your
confocal contract. Are they claiming that all the break-downs were caused
by mis-use and abuse? If that were the case, they shouldn't have covered
the repairs even under warranty. On the other hand, if the failures were
due to their poor design and construction, they certainly have a lot of
nerve implying that your contract is being increased because of that. I'm
also very surprised that parts are not covered. To me, that is not a
service contract, particularly for a new instrument. It can be
understandable for very old instruments, but should be reflected in the
pricing.

Whoever the vendor is, I would certainly have a hard time recommending them
to anyone, given the situation you describe.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: rosemary.white-at-csiro.au [mailto:rosemary.white-at-csiro.au]
Sent: Monday, May 16, 2011 10:01 PM
To: kenconverse-at-qualityimages.biz

Dear all,

Just to get some numbers here, how much is reasonable for a service
contract? 10% of original cost of the instrument? 15% of cost?

We have a service contract on one instrument (confocal) that was (10 years
ago) about 8% of original cost, now is about 10%. This is essentially a
full extended warranty, and includes an annual service visit, unlimited
emergency callouts and all replacement parts, even lasers are included.
It's been great. I don't think they have this type of contract for new
instruments, though©

However, for a new instrument (ESEM) from a different supplier, we were
quoted about 15% of the original cost for a contract with 2 annual
maintenance visits plus unlimited emergency callouts, but no coverage of
replacement parts. For 2 maintenance visits and 2 emergency callouts but
no parts the cost went down to about 8% of initial cost. The reason given
for the cost was that we had many breakdowns in the 12 month warranty
period (2 mother boards, 3 different Peltier stages, 2 BSE detectors,
computer fan blew up, etc, etc), and they had to factor this in.
Considering the presumed reliability of SEMs compared to confocals (in my
experience before this new instrument), and that no parts were covered, it
seemed quite expensive.

Is the latter about what you'd expect to pay for a service contract?

Thanks,
Rosemary White

Dr Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
E rosemary.white-at-csiro.au






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From: lingpine-at-yahoo.com
Date: Tue, 17 May 2011 10:30:30 -0500
Subject: [Microscopy] Re:

Contents Retrieved from Microscopy Listserver Archives
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As everyone knows shopping is the most interesting pastime in the world. ... http://bankett.info/friends_links.php?efaolid=18y0

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From: zaluzec-at-aaem.amc.anl.gov
Date: Tue, 17 May 2011 11:14:56 -0500
Subject: [Microscopy] Administrivia: SPAM from User "lingpine"

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Colleagues;

I see that the MicroscopyListserver user's account "lingpine" has been
used to spam the list. It was a valid account, but now is
no longer trustworthy.

This account has been deleted and should no longer have
access to the server.

Sorry for cluttering your Email.

Nestor
Your Friendly Neighborhood SysOp


--
===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
Materials Science Division/Bldg 212
9700 S. Cass Ave
Argonne, Illinois 60439 USA

Tel: 530-NES-TORZ (530-637-8679) has Voice Mail
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Email: Zaluzec-at-aaem.amc.anl.gov

Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
Senior Fellow the Computational Institute - University of Chicago
E.P. Wigner Fellow - Oak Ridge National Laboratory
President Microscopy Society of America






===========================================
TPMLab: http://tpm.amc.anl.gov
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===========================================

The box said ...
"This program requires Win 95/98/NT or better..."
So I bought a Mac !

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From: kenconverse-at-qualityimages.biz
Date: Tue, 17 May 2011 12:35:46 -0500
Subject: [Microscopy] Administrivia: SPAM from User "lingpine"

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Nestor,
Please don't apologize! I'm having a hard time remembering the last time
got any spam via the Listserver. I don't know how you do it, but thank you
for doing such an outstanding job.

I sure wish I could automate my mailbox that well!

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: zaluzec-at-aaem.amc.anl.gov [mailto:zaluzec-at-aaem.amc.anl.gov]
Sent: Tuesday, May 17, 2011 12:17 PM
To: kenconverse-at-qualityimages.biz

Colleagues;

I see that the MicroscopyListserver user's account "lingpine" has been
used to spam the list. It was a valid account, but now is
no longer trustworthy.

This account has been deleted and should no longer have
access to the server.

Sorry for cluttering your Email.

Nestor
Your Friendly Neighborhood SysOp


--
===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
Materials Science Division/Bldg 212
9700 S. Cass Ave
Argonne, Illinois 60439 USA

Tel: 530-NES-TORZ (530-637-8679) has Voice Mail
Fax: 630-252-4798

iChat: Zaluzec-at-AIM.com
Skype: Zaluzec-at-ANL
Polycom: 146.139.72.119
TPM: http://tpm.amc.anl.gov

Email: Zaluzec-at-aaem.amc.anl.gov

Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
Senior Fellow the Computational Institute - University of Chicago
E.P. Wigner Fellow - Oak Ridge National Laboratory
President Microscopy Society of America






===========================================
TPMLab: http://tpm.amc.anl.gov
MMSite: http://www.amc.anl.gov
===========================================

The box said ...
"This program requires Win 95/98/NT or better..."
So I bought a Mac !

===========================================

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From: mmiralles-at-pi.ac.ae
Date: Wed, 18 May 2011 06:19:54 -0500
Subject: [Microscopy] NACl in Backscattered Imaging

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,

I was doing a backscattered imaging of a rock thin section today (in
ESEM mode) which was mainly composed of K-feldpar, silicate matrix.
There were a few square-shaped crystals that I thought to contain Fe-S,
because of its very bright color (against a more grayish background).
However, the spectrum gave me Na-Cl. Can salt crystals really appear
bright in BSE Imaging?!

Thoughts?

Many thanks,
Melina Miralles




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From: frah0010-at-umn.edu
Date: Wed, 18 May 2011 08:38:04 -0500
Subject: [Microscopy] Re: NACl in Backscattered Imaging

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Melina,

Yes, salt will look bright in BSE because the Na is bound to Cl, not O, and Cl is even heavier than S. The crystals will also stand out in the image because they are sitting on the specimen surface, left behind by sweaty fingers. You've described exactly what one sees when sweat has left small salt crystals on an uncleaned specimen.

Best,
Ellery


Ellery Frahm, Ph.D.
Manager & Principal Analyst, Electron Microprobe Laboratory
Research Associate, Department of Geology & Geophysics
University of Minnesota - Twin Cities
http://probelab.geo.umn.edu

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From: wesaia-at-iastate.edu
Date: Wed, 18 May 2011 08:55:01 -0500
Subject: [Microscopy] NACl in Backscattered Imaging

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I have seen similar behavior in Cl-rich areas in polished concrete. I have suspected it was due to charging but have not pursued the matter further to nail that down.

I also have seen increased BSE brightness from cathodoluminescent materials. I can confirm those by disconnecting the power to the illuminator on our chamber scope. I can see the beam scanning across those materials. I don't think that is the case for Cl, but will need to check.

Warren Straszheim

-----Original Message-----
X-from: mmiralles-at-pi.ac.ae [mailto:mmiralles-at-pi.ac.ae]
Sent: Wednesday, May 18, 2011 6:21 AM
To: wesaia-at-iastate.edu

Hi,

I was doing a backscattered imaging of a rock thin section today (in
ESEM mode) which was mainly composed of K-feldpar, silicate matrix.
There were a few square-shaped crystals that I thought to contain Fe-S,
because of its very bright color (against a more grayish background).
However, the spectrum gave me Na-Cl. Can salt crystals really appear
bright in BSE Imaging?!

Thoughts?

Many thanks,
Melina Miralles



==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
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Subject: [Microscopy] viaWWW:Cryo-SEM Contract Lab

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Title-Subject: [Filtered] Cryo-SEM

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From: FMonson-at-wcupa.edu
Date: Wed, 18 May 2011 10:58:16 -0500
Subject: [Microscopy] NACl in Backscattered Imaging

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When I am asked to analyze a thin section, I have generally analyzed the free embedding plastic (at the edges of the section) to check for a Cl signal which regularly appears in cracks and holes in many sections - just to confirm the source when there appears to be 'nothing' at any B/C setting within the darkest BSE zones in the section.

Cheers,

FCM

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
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I have seen similar behavior in Cl-rich areas in polished concrete. I have suspected it was due to charging but have not pursued the matter further to nail that down.

I also have seen increased BSE brightness from cathodoluminescent materials. I can confirm those by disconnecting the power to the illuminator on our chamber scope. I can see the beam scanning across those materials. I don't think that is the case for Cl, but will need to check.

Warren Straszheim

-----Original Message-----
X-from: mmiralles-at-pi.ac.ae [mailto:mmiralles-at-pi.ac.ae]
Sent: Wednesday, May 18, 2011 6:21 AM
To: wesaia-at-iastate.edu

Hi,

I was doing a backscattered imaging of a rock thin section today (in
ESEM mode) which was mainly composed of K-feldpar, silicate matrix.
There were a few square-shaped crystals that I thought to contain Fe-S,
because of its very bright color (against a more grayish background).
However, the spectrum gave me Na-Cl. Can salt crystals really appear
bright in BSE Imaging?!

Thoughts?

Many thanks,
Melina Miralles



==============================Original Headers==============================
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From: jquinn-at-ms.cc.sunysb.edu
Date: Wed, 18 May 2011 12:13:37 -0500
Subject: [Microscopy] Fwd: NACl in Backscattered Imaging

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Melina

Try using WinXray (from McGill), Electron Flight Simulator (SmallWorld),
or similar to simply calculate the backscatter coefficient of the
compounds in your sample.

This is a valuable tool.

Jim


} Date: Wed, 18 May 2011 06:30:58 -0500
} To: jquinn-at-ms.cc.sunysb.edu
} From: mmiralles-at-pi.ac.ae
} Subject: [Microscopy] NACl in Backscattered Imaging
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 18 May 2011 18:50:19 -0500
Subject: [Microscopy] viaWWW:protein crystal embedding

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Email: htsmith-at-syr.edu Name: Hunter Smith

Organization: Upstate Medical Center/ SUNY-ESF

Title-Subject: [Filtered] protein crystal embedding

Message: Just wondering if anyone could give some input or direction on
embedding protein crystals. I have already embedded one set into L.R.
resin, with one (1) dehydration step 50/50 (etoh/L.R.).
Does anyone have tips for dehydration (or even if you need to run
through dehydration steps with such small crystals) and the positioning
of the crystals to 'float' in the L.R. resin?
While embedding the I would fill the mold halfway with L.R. and insert
the crystals. These crystals would float for a couple seconds, but once
touched to reposition them, they would sink to the bottom. Is this going
to make sectioning tough?

I appreciate your time.
Thanks,
Hunter Smith

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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Thu, 19 May 2011 01:24:18 -0500
Subject: [Microscopy] protein crystal embedding

Contents Retrieved from Microscopy Listserver Archives
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WRT protein crystal embedding

} Message: Just wondering if anyone could give some input or direction on
} embedding protein crystals. I have already embedded one set into L.R.
} resin, with one (1) dehydration step 50/50 (etoh/L.R.).
} Does anyone have tips for dehydration (or even if you need to run
} through dehydration steps with such small crystals) and the positioning
} of the crystals to 'float' in the L.R. resin?
} While embedding the I would fill the mold halfway with L.R. and insert
} the crystals. These crystals would float for a couple seconds, but once
} touched to reposition them, they would sink to the bottom. Is this going
} to make sectioning tough?

depending on what you finally want to visualize, I would suggest another method - freeze-etching. Much faster, more reliable, for what you - probably - would like to see.
have a look at this web-page (showing light microscopy and TEM of a freeze-etched crystal of a globular protein complex; of liposomes; and of a Euglena cell) - and decide.
http://www.ch.tum.de/em/emlabor/methoden/tem-praep-b-gg.htm
if you would prefer to have a translation of the text on this web-page, please contact either Sevil Weinkauf or myself directly.

Otherwise, I would recommend to do freeze-substitution (incl. fixation, if necessary), rather than dehydration/embedding at room temperature.
kind regards,
Reinhard

--
Prof. Dr. Reinhard Rachel
Universitaet Regensburg
Centre for EM / Anatomy
Faculty for Biology&Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 19 May 2011 12:29:03 -0500
Subject: [Microscopy] viaWWW:TNT in SEM

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Title-Subject: [Filtered] TNT

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references, if possible.

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From: rintugr-at-gmail.com
Date: Thu, 19 May 2011 13:39:59 -0500
Subject: [Microscopy] EBSD question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Colleagues,

An engineering graduate student would like to use the EBSD system
which is in our Zeiss Ultraplus thermal FESEM to get some data from
his sample. He thinks EBSD is the best solution. However, I have no
expertise in EBSD analysis, so any help in this matter will be very
much appreciated. I have placed two powerpoint slides in my dropbox
for people to view. Please click on the link below or cut and paste
the URL on your web browser to see the diagram and what he wants to do
with his sample.

http://dl.dropbox.com/u/7737489/EBSD.ppt

Thanks in advance.

Soumitra

************************************************************
Soumitra Ghoshroy
Director, Electron Microscopy Center
Research Professor, Biology
University of South Carolina
715 Sumter Street
Columbia, SC 29208
803-777-7085 (office)
803-777-8908 (fax)
http://www.emc.sc.edu

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6, 30 -- Subject: EBSD question
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From: lisa-at-glosuntech.com
Date: Fri, 20 May 2011 00:56:33 -0500
Subject: [Microscopy] Hitachi H600 TEM Parts needed

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Members,

We are looking for parts for our H600 TEM. If you have any used or unused Hitachi H600 parts, please email us, we will be glad to pay small cost plus shipping for it.


Thank you.


Lisa

Glosuntech

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From: Jens.Lietzau-at-gkndriveline.com
Date: Fri, 20 May 2011 01:44:18 -0500
Subject: [Microscopy] RE: EBSD question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Soumitra,

what data does your student need/want to obtain ?

If he really needs to determine the individual crystallographic orientation(s) of areas only about 5µm across, EBSD would indeed be the best solution (actually the only one I know), but ...

I have encountered EBSD in two applications (in metals):
1) The determination of the orientation density function of the crystallites as a complement to an XRD texture analysis.
2) The determination of the 'misalignment' between the lattice structures of adjoining crystallites to calculate the interface energy/strength.

Since the plates in his sample are separated by a secondary phase, it cannot be case 2), and in case 1) he would have to map a lot of plates, not just a few.

Regards,
Jens

Jens Lietzau
Electron Microscopy, X-Ray Diffraction & Spectroscopy
GKN Driveline Research & Product Development Centre
Hauptstrasse 130, 53797 Lohmar, Germany


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Dear Colleagues,

An engineering graduate student would like to use the EBSD system
which is in our Zeiss Ultraplus thermal FESEM to get some data from
his sample. He thinks EBSD is the best solution. However, I have no
expertise in EBSD analysis, so any help in this matter will be very
much appreciated. I have placed two powerpoint slides in my dropbox
for people to view. Please click on the link below or cut and paste
the URL on your web browser to see the diagram and what he wants to do
with his sample.

http://dl.dropbox.com/u/7737489/EBSD.ppt

Thanks in advance.

Soumitra

************************************************************
Soumitra Ghoshroy
Director, Electron Microscopy Center
Research Professor, Biology
University of South Carolina
715 Sumter Street
Columbia, SC 29208
803-777-7085 (office)
803-777-8908 (fax)
http://www.emc.sc.edu


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From: john.mitchels-at-gmail.com
Date: Fri, 20 May 2011 03:55:54 -0500
Subject: [Microscopy] Olympus ADDA II Question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear List

We recently bought a second-hand JEOL 6301F which came with an Olympus
ADDA II imaging system controller and PCI card but not the Dongle and
Software. I have been trying to get a dongle and software licence from
Olympus but they are are not interested in supplying the original
software (AnalySIS) and disks as they want us to buy Scandium which
seems to cost the earth for just capturing images (£3000) especially
as the hardware it is not the most current model. My questions are has
anyone:

1. Got a spare software version and licence they would be willing to part with?
2. Got experience grabbing images using this particular hardware but
by using some other piece of software.
3. Got any advice on the Scandium software, is it worth the £3k for
the basic package?
4. Have any suggestions for an alternative image capture system of
comparable price?
We do not need to do anything else except grab images. We do not need
any sort of column control. Any advice would be gratefully received.

Regards
John
University of Bath, UK


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From: werner1-at-slb.com
Date: Fri, 20 May 2011 08:06:50 -0500
Subject: [Microscopy] viaWWW:TNT in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Lisa,

Not TNT and no literature references, but I look at explosive powders (RDX, HMX, HNS, PETN etc.) in the SEM regularly.
Aluminum stub for heat dissipation, gold sputter coat to limit charging and enhance secondary electron yield, 3-5 KV accelerating voltage, nice images.
What kind of details are you looking for?

Regards,
Andrew Werner
Chief Metallurgist, Perforating
Schlumberger Reservoir Completions
14910 Airline Road
Rosharon, TX 77583

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Email: lisa.whitworth-at-okstate.edu Name: Lisa Whitworth

Organization: Oklahoma State University

Title-Subject: [Filtered] TNT

Message: Has anyone looked at TNT particles using SEM? I'm looking for
references, if possible.

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From: greggps-at-umich.edu
Date: Fri, 20 May 2011 13:02:15 -0500
Subject: [Microscopy] [spam]* Microscope service strategies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Chris,
You should also consider that the company may advertise 25% savings, but on advanced equipment, they will probably back off to 10-15%, since one unreliable instrument can suck up their pool of money faster than their profit margin can afford.

If can you show me an equipment service underwriter's quote for 25% less than list for a well-equipped confocal or electron microscope, you'll definitely have my interest. Of course this depends on the size of the company's pool of contracts.

Regards,
~Gregg

Gregg Sobocinski
Microscope Imaging Specialist
University of Michigan
Molecular, Cellular, and Developmental Biology
Ann Arbor, Michigan
USA



-----Original Message-----
X-from: Christopher.Gilpin-at-utsouthwestern.edu [mailto:Christopher.Gilpin-at-utsouthwestern.edu]
Sent: Monday, May 16, 2011 3:24 PM
To: Sobocinski, Gregg



All,
There is a new option that is floating around the University of Texas
system. An independent company has signed a deal with UT system to save
everyone 25% on their service contracts (not just EMs - a whole range of
equipment, as long as it is a parts and labor contract). They get you to
move to an "on demand" arrangement with your existing service provider. They
pay all the bills and take the chance that you will spend less than a full
price contract. Of course there is the issue with how service providers
prioritize contract versus on-demand customers. This company will freeze the
cost for 4 years and as part of the arrangement with UT system (with
qualifying contracts and equipment) will not decline coverage.

I am tempted but don't like the idea of having less priority when I make a
service call.

Regards

Chris


Christopher J Gilpin Ph.D.
Assistant Professor
Director, Molecular and Cellular Imaging Facility
K1.A04
UT Southwestern Medical Center at Dallas
5323 Harry Hines Boulevard
Dallas, TX 75390-9039
Phone +1 214 648 2827

-----Original Message-----
X-from: raharris-at-ucdavis.edu [mailto:raharris-at-ucdavis.edu]
Sent: Monday, May 16, 2011 12:38 PM
To: Christopher Gilpin

I have been following this thread intermittently so I do not know if what I
am suggesting has been mentioned. Also, it is a little off topic so please
forgive me; I am not trying to high-jack the thread but just to insert a
comment. In my experience, if the administration of your school or
university is looking for a way to indirectly close down a program, this is
one of the strategies they will use. I have seen it happen many times at
the university where I have worked since 1979.

Good luck,

Rick A. Harris






______________________________________
X-from: nizets2-at-yahoo.com [nizets2-at-yahoo.com]
Sent: Monday, May 16, 2011 1:43 AM
To: Rick A Harris

Basically what you are saying is that people with more money are happier.
This is quite an evidence, isn't it?
I don't think people leave a service contract when they don't have to.

Regards,

Stephane



----- Original Message ----
X-from: "kenconverse-at-qualityimages.biz" {kenconverse-at-qualityimages.biz}
To: nizets2-at-yahoo.com
Sent: Fri, May 13, 2011 3:25:39 PM

Valery,
Very well stated. The only thing I might add is that the customer with a
service contract is guaranteed certain things, such as preventive
maintenance, operation to specification, perhaps even guaranteed maximum
down-time. The one-off customer has none of this. The service organization
is contractually bound to the contract customer. Period. Yes, the one off
cash is nice, but the regular customers are far more valuable in the long
run. They often are happier customer, also.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Friday, May 13, 2011 8:59 AM
To: kenconverse-at-qualityimages.biz

Dave's message below compelled me to explain a difference between service
contract and one-off service call from the vendor's perspective.

For most of FIB/SEM equipment service providers, both small and large,
equipment service is a business activity; it must be profitable or could not
continue. Delivering service and making it possible also costs
money: most of users do not realize how enormous are the aggregated expenses
of labor, travel, sourcing parts, re-designing or substituting obsolete
components, warehousing, bean counting, etc...

When you buy a service contract from the certain provider, it not just gives
you reliable support with predictable response time, but also gives that
service organization reliable stream of revenue and predictable work load.
Stability allows to plan and structure business, retain and maintain
necessary resources, source and stock parts, etc.

If customer goes off service contract then situation becomes completely
unpredictable: he/she may call in for service, but also may do self-service,
hire internal service person, or do whatever else. In such situation
managers of the service organization have no other choice but to prepare for
the worse and assume that there will be no service calls from this customer.
To insure survival of the organization, cost-saving measures follow
immediately: engineers are laid off, facilities are closed or downsized,
parts are not procured and not stored, and so forth. These measures are
inevitable - otherwise service organization simply could not continue to
exist. Reduced resources will usually be matched to the needs of
contract-paying customers, with little to no spare capacity.

When odd service call comes from the customer without the service contract,
it is treated as such - one-off, single-case business, which may never
return. Yes, it is nice to get some extra revenue, but (already reduced)
resources of engineering time and parts will be given to this call only if
and when all the needs of service-contract customers are taken care of, and
not a split second earlier.

The bottom line is that service organization simply can't provide more
service then what it paid for, and overall level of service users receive
will always degrade in one way or another, as the service revenue decreases.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 5/13/2011 5:59 AM, David.Patton-at-uwe.ac.uk wrote:
}
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} We went off contract last year and had to wait over 4 months for a
service. The engineer said that if it had been a breakdown the delay would
have been the same.
}
} Dave
}
} -----Original Message-----
} X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
} Sent: 12 May 2011 17:50
} To: David Patton
} Subject: [spam]* [Microscopy] Microscope service strategies
}
}
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} Friends:
}
} We are caught on the horns of a dilemma. For nearly forty years, Delta
College has trained EM technicians for positions in academia and industry.
For most of those forty years our instruments, now numbering 3 TEM's, 4,
SEM's, an AFM and an FIB, have been covered by service contracts. Our
instruments are used all day, every day for student training.
}
} As you may have heard, funding for California schools is getting so
} tight
that the bean counters are turning to drastic measures to make ends meet.
Among pressures put on us is a requirement that we enroll at least 20
students/class, nearly impossible in our advanced, hand-on classes. In
addition, the administration is now reluctant to authorize service contracts
for our instruments.
}
} Many or our microscopes are older and require more repairs due to
} their
constant use as training instruments. We have received good service from our
scope vendor, but it is expensive, mostly because we have so many
instruments. The admin. people only look at the bottom line and when they
see the big number, they go ballistic.

}
} We are afraid that if we drop our current service contracts that the
manufacturer will not pick them up if we want to come back after a year off
their service. We are afraid that if we go to pay as you go with the
manufacturer, we will be low in their priority list, something not good with
so many students depending on microscope time to finish projects. We are
afraid that if we can find a cheaper, independent service provider, parts
will be hard to get and the price of the parts would be in addition to the
cost of the service agreement, whereas parts are included in our current
contracts.
}
} This is getting long. Bottom line is we are asking for any advice or
suggestions about how to approach this. I have heard all the horror stories
about 3rd party insurance plans, etc. Are those stories true? Is it true
that vendors move you to the bottom of the list without a contract? What is
your experience if ever faced by this kind of situation? What kind of
strategy has worked, or not?
}
} Hoping for a miracle,
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
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________________________________

UT Southwestern Medical Center
The future of medicine, today.


==============================Original Headers==============================
65, 36 -- From christopher.gilpin-at-utsouthwestern.edu Mon May 16 14:16:35 2011
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78, 30 -- From greggps-at-umich.edu Fri May 20 13:02:15 2011
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78, 30 -- From: "Sobocinski, Gregg" {greggps-at-umich.edu}
78, 30 -- To: "'Christopher.Gilpin-at-utsouthwestern.edu'"
78, 30 -- {Christopher.Gilpin-at-utsouthwestern.edu} ,
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78, 30 -- Date: Fri, 20 May 2011 14:02:12 -0400
78, 30 -- Subject: RE: [Microscopy] RE: Microscope service strategies-- Third-party
78, 30 -- service contract underwriters
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From: DusevichV-at-umkc.edu
Date: Fri, 20 May 2011 14:45:53 -0500
Subject: [Microscopy] a problem with hotel booking for M&M 2011

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi listers,

I'd like to bring to your attention a problem with hotel booking for M&M 2011 through web. It looks like the web page does not work with new Internet Explorer 9 and with Fox. It shows no vacancies for users with mentioned browsers (I have checked on two computers), but for Explorer 8 it gives rooms in four hotels.
Regards,

Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} -----Original Message-----
} From: greggps-at-umich.edu [mailto:greggps-at-umich.edu]
} Sent: Friday, May 20, 2011 1:03 PM
} To: Dusevich, Vladimir
} Subject: [Microscopy] RE: RE: Microscope service strategies-- Third-
} party
}
}
}
}
} -----------------------------------------------------------------------
} -----
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
} To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
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}
} Chris,
} You should also consider that the company may advertise 25% savings,
} but on advanced equipment, they will probably back off to 10-15%, since
} one unreliable instrument can suck up their pool of money faster than
} their profit margin can afford.
}
} If can you show me an equipment service underwriter's quote for 25%
} less than list for a well-equipped confocal or electron microscope,
} you'll definitely have my interest. Of course this depends on the size
} of the company's pool of contracts.
}
} Regards,
} ~Gregg
}
} Gregg Sobocinski
} Microscope Imaging Specialist
} University of Michigan
} Molecular, Cellular, and Developmental Biology
} Ann Arbor, Michigan
} USA
}
}
}
} -----Original Message-----
} X-from: Christopher.Gilpin-at-utsouthwestern.edu
} [mailto:Christopher.Gilpin-at-utsouthwestern.edu]
} Sent: Monday, May 16, 2011 3:24 PM
} To: Sobocinski, Gregg
} Subject: [Microscopy] FW: RE: [spam]* Microscope service strategies
}
}
}
}
} -----------------------------------------------------------------------
} -----
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
} To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} -----------------------------------------------------------------------
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}
}
}
} All,
} There is a new option that is floating around the University of Texas
} system. An independent company has signed a deal with UT system to save
} everyone 25% on their service contracts (not just EMs - a whole range
} of
} equipment, as long as it is a parts and labor contract). They get you
} to
} move to an "on demand" arrangement with your existing service provider.
} They
} pay all the bills and take the chance that you will spend less than a
} full
} price contract. Of course there is the issue with how service providers
} prioritize contract versus on-demand customers. This company will
} freeze the
} cost for 4 years and as part of the arrangement with UT system (with
} qualifying contracts and equipment) will not decline coverage.
}
} I am tempted but don't like the idea of having less priority when I
} make a
} service call.
}
} Regards
}
} Chris
}
}
} Christopher J Gilpin Ph.D.
} Assistant Professor
} Director, Molecular and Cellular Imaging Facility
} K1.A04
} UT Southwestern Medical Center at Dallas
} 5323 Harry Hines Boulevard
} Dallas, TX 75390-9039
} Phone +1 214 648 2827
}
} -----Original Message-----
} X-from: raharris-at-ucdavis.edu [mailto:raharris-at-ucdavis.edu]
} Sent: Monday, May 16, 2011 12:38 PM
} To: Christopher Gilpin
} Subject: [Microscopy] RE: [spam]* Microscope service strategies
}
}
}
}
} -----------------------------------------------------------------------
} -----
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
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} http://www.microscopy.com/MicroscopyListserver
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}
} I have been following this thread intermittently so I do not know if
} what I
} am suggesting has been mentioned. Also, it is a little off topic so
} please
} forgive me; I am not trying to high-jack the thread but just to insert
} a
} comment. In my experience, if the administration of your school or
} university is looking for a way to indirectly close down a program,
} this is
} one of the strategies they will use. I have seen it happen many times
} at
} the university where I have worked since 1979.
}
} Good luck,
}
} Rick A. Harris
}
}
}
}
}
}
} ______________________________________
} X-from: nizets2-at-yahoo.com [nizets2-at-yahoo.com]
} Sent: Monday, May 16, 2011 1:43 AM
} To: Rick A Harris
} Subject: [Microscopy] [spam]* Microscope service strategies
}
} -----------------------------------------------------------------------
} -----
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
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} http://www.microscopy.com/MicroscopyListserver
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}
} Basically what you are saying is that people with more money are
} happier.
} This is quite an evidence, isn't it?
} I don't think people leave a service contract when they don't have to.
}
} Regards,
}
} Stephane
}
}
}
} ----- Original Message ----
} X-from: "kenconverse-at-qualityimages.biz" {kenconverse-at-qualityimages.biz}
} To: nizets2-at-yahoo.com
} Sent: Fri, May 13, 2011 3:25:39 PM
} Subject: [Microscopy] RE: [spam]* Microscope service strategies
}
}
}
}
} -----------------------------------------------------------------------
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} America
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}
} Valery,
} Very well stated. The only thing I might add is that the customer with
} a
} service contract is guaranteed certain things, such as preventive
} maintenance, operation to specification, perhaps even guaranteed
} maximum
} down-time. The one-off customer has none of this. The service
} organization
} is contractually bound to the contract customer. Period. Yes, the one
} off
} cash is nice, but the regular customers are far more valuable in the
} long
} run. They often are happier customer, also.
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} Sent: Friday, May 13, 2011 8:59 AM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] [spam]* Microscope service strategies
}
}
}
}
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}
} Dave's message below compelled me to explain a difference between
} service
} contract and one-off service call from the vendor's perspective.
}
} For most of FIB/SEM equipment service providers, both small and large,
} equipment service is a business activity; it must be profitable or
} could not
} continue. Delivering service and making it possible also costs
} money: most of users do not realize how enormous are the aggregated
} expenses
} of labor, travel, sourcing parts, re-designing or substituting obsolete
} components, warehousing, bean counting, etc...
}
} When you buy a service contract from the certain provider, it not just
} gives
} you reliable support with predictable response time, but also gives
} that
} service organization reliable stream of revenue and predictable work
} load.
} Stability allows to plan and structure business, retain and maintain
} necessary resources, source and stock parts, etc.
}
} If customer goes off service contract then situation becomes completely
} unpredictable: he/she may call in for service, but also may do self-
} service,
} hire internal service person, or do whatever else. In such situation
} managers of the service organization have no other choice but to
} prepare for
} the worse and assume that there will be no service calls from this
} customer.
} To insure survival of the organization, cost-saving measures follow
} immediately: engineers are laid off, facilities are closed or
} downsized,
} parts are not procured and not stored, and so forth. These measures are
} inevitable - otherwise service organization simply could not continue
} to
} exist. Reduced resources will usually be matched to the needs of
} contract-paying customers, with little to no spare capacity.
}
} When odd service call comes from the customer without the service
} contract,
} it is treated as such - one-off, single-case business, which may never
} return. Yes, it is nice to get some extra revenue, but (already
} reduced)
} resources of engineering time and parts will be given to this call only
} if
} and when all the needs of service-contract customers are taken care of,
} and
} not a split second earlier.
}
} The bottom line is that service organization simply can't provide more
} service then what it paid for, and overall level of service users
} receive
} will always degrade in one way or another, as the service revenue
} decreases.
}
} Cheers :)
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
} Web: www.freudlabs.com
}
} On 5/13/2011 5:59 AM, David.Patton-at-uwe.ac.uk wrote:
} }
} -----------------------------------------------------------------------
} -----
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} }
} } We went off contract last year and had to wait over 4 months for a
} service. The engineer said that if it had been a breakdown the delay
} would
} have been the same.
} }
} } Dave
} }
} } -----Original Message-----
} } X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
} } Sent: 12 May 2011 17:50
} } To: David Patton
} } Subject: [spam]* [Microscopy] Microscope service strategies
} }
} }
} }
} }
} }
} -----------------------------------------------------------------------
} -----
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} } America To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
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} }
} -----------------------------------------------------------------------
} -----
} }
} } Friends:
} }
} } We are caught on the horns of a dilemma. For nearly forty years,
} Delta
} College has trained EM technicians for positions in academia and
} industry.
} For most of those forty years our instruments, now numbering 3 TEM's,
} 4,
} SEM's, an AFM and an FIB, have been covered by service contracts. Our
} instruments are used all day, every day for student training.
} }
} } As you may have heard, funding for California schools is getting so
} } tight
} that the bean counters are turning to drastic measures to make ends
} meet.
} Among pressures put on us is a requirement that we enroll at least 20
} students/class, nearly impossible in our advanced, hand-on classes. In
} addition, the administration is now reluctant to authorize service
} contracts
} for our instruments.
} }
} } Many or our microscopes are older and require more repairs due to
} } their
} constant use as training instruments. We have received good service
} from our
} scope vendor, but it is expensive, mostly because we have so many
} instruments. The admin. people only look at the bottom line and when
} they
} see the big number, they go ballistic.
}
} }
} } We are afraid that if we drop our current service contracts that the
} manufacturer will not pick them up if we want to come back after a year
} off
} their service. We are afraid that if we go to pay as you go with the
} manufacturer, we will be low in their priority list, something not good
} with
} so many students depending on microscope time to finish projects. We
} are
} afraid that if we can find a cheaper, independent service provider,
} parts
} will be hard to get and the price of the parts would be in addition to
} the
} cost of the service agreement, whereas parts are included in our
} current
} contracts.
} }
} } This is getting long. Bottom line is we are asking for any advice or
} suggestions about how to approach this. I have heard all the horror
} stories
} about 3rd party insurance plans, etc. Are those stories true? Is it
} true
} that vendors move you to the bottom of the list without a contract?
} What is
} your experience if ever faced by this kind of situation? What kind of
} strategy has worked, or not?
} }
} } Hoping for a miracle,
} }
} } Jon
} }
} } Jonathan Krupp
} } Delta College
} } 5151Pacific Ave.
} } Stockton, CA 95207
} } 209-954-5284
} } jkrupp-at-deltacollege.edu
} }
} }
} }
} }
} }
} } ==============================Original
} Headers==============================
} } 13, 34 -- From jkrupp-at-deltacollege.edu Thu May 12 11:47:26 2011 13,
} 34
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From: jkrupp-at-deltacollege.edu
Date: Fri, 20 May 2011 15:08:33 -0500
Subject: [Microscopy] Polymer cryo sectioning

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

I have a student who would like to section some polymer samples. We figure we will need to cool them to make this work.

Our cryo resources a limited, an RMC MT-7 and some parts for the CR-21 attachment, but it is not complete.

Any ideas for how to proceed or jury-rig a home made system?

Thanks

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: piper1960-at-hotmail.com
Date: Fri, 20 May 2011 15:17:53 -0500
Subject: [Microscopy]

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Hi All,

On our Zeiss instrument (just } 1 year old) during pump down, the instrument gets to ~9 Pa and progress seems to stop. Under "Vac status" it says "Waiting Penning." There were no error messages when initializing the software, and the green light on the Penning gauge is on. I am no expert, but I suspect that the vacuum system has pumped down as it should but the system can't read any signal from the Penning gauge and it won't allow the gun to fire. I have turned off the tool and restarted it several times, but always with the same problem.

This was the first time the tool has been started since the terrible weather we had in Alabama on April 27th and we lost power for several hours (it was on Standby when the power went out). Again, there appears to be no damage and there are no error messages.

Any suggestions on what the problem may be would be greatly appreciated.

Thank you,

Mark Puckett




T. Markham Puckett, Ph.D.
Associate Professor of Geology
Department of Physics and Earth Science
P.O. Box 5130
University of North Alabama
Florence, Alabama 35632-0001
“Why, sometimes I’ve believed as many as six impossible things before breakfast.” The White Queen to Alice, Through the Looking-Glass

==============================Original Headers==============================
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From: stefan.diller-at-t-online.de
Date: Fri, 20 May 2011 15:21:10 -0500
Subject: [Microscopy] Re: Polymer cryo sectioning

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Jonathan,
if you are able to send me some photos of your CR21 system and the controller, I might be able to help you.
I have the service manual etc.
Depends on what you like to section you should be able to make decent glass knifes or have a cryo diamond knife :-)
I am doing RMC service for Germany. If anything other fails I can get you in touch with RMC at Tucson.

Best wishes,
Stefan




-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 20.05.11 22:10, schrieb jkrupp-at-deltacollege.edu:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi
}
} I have a student who would like to section some polymer samples. We figure we will need to cool them to make this work.
}
} Our cryo resources a limited, an RMC MT-7 and some parts for the CR-21 attachment, but it is not complete.
}
} Any ideas for how to proceed or jury-rig a home made system?
}
} Thanks
}
} Jon
}
} Jonathan Krupp
} Delta College
} 5151Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
}
}
}
}
} ==============================Original Headers==============================
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From: piper1960-at-hotmail.com
Date: Fri, 20 May 2011 15:27:19 -0500
Subject: [Microscopy] Penning gauge on Zeiss EVO MA10

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Hi All,

Sorry if you received the message twice.

On our Zeiss instrument (just over 1 year old) during pump down, the instrument gets to 9 Pa and progress seems to stop. Under "Vac status" it says "Waiting Penning." There were no error messages when initializing the software, and the green light on the Penning gauge is on. I am no expert, but I suspect that the vacuum system has pumped down as it should but the system can't read any signal from the Penning gauge and it won't allow the gun to fire.

This was the first time the tool has been started since the terrible weather we had in Alabama on April 27th and we lost power for several hours (it was on Standby when the power went out). I have turned off the tool and restarted it several times, but always with the same problem. Again, there appears to be no damage and there are no error messages.

Any suggestions on what the problem may be would be greatly appreciated.

Thank you,

Mark Puckett



T. Markham Puckett, Ph.D.


Associate Professor of Geology


Department of Physics and Earth Science


P.O. Box 5130


University of North Alabama


Florence, Alabama 35632-0001




“Why, sometimes I’ve believed as many as six impossible things before breakfast.” The White Queen to Alice, Through the Looking-Glass

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From: RHBerg-at-danforthcenter.org
Date: Fri, 20 May 2011 17:02:33 -0500
Subject: [Microscopy] Re: [Junk released by Policy action] Penning gauge on

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Mark,

With our 912 the IGPs take a bit of time to pump down and during this the Penning gauge message is displayed. Due to your long hiatus from active pumping I bet you will need to have the instrument pump down over the weekend before it reaches hi vac. Hope you survived the storms OK!

Howard



On May 20, 2011, at 3:28 PM, {piper1960-at-hotmail.com} wrote:

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} Hi All,
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} Sorry if you received the message twice.
}
} On our Zeiss instrument (just over 1 year old) during pump down, the instrument gets to 9 Pa and progress seems to stop. Under "Vac status" it says "Waiting Penning." There were no error messages when initializing the software, and the green light on the Penning gauge is on. I am no expert, but I suspect that the vacuum system has pumped down as it should but the system can't read any signal from the Penning gauge and it won't allow the gun to fire.
}
} This was the first time the tool has been started since the terrible weather we had in Alabama on April 27th and we lost power for several hours (it was on Standby when the power went out). I have turned off the tool and restarted it several times, but always with the same problem. Again, there appears to be no damage and there are no error messages.
}
} Any suggestions on what the problem may be would be greatly appreciated.
}
} Thank you,
}
} Mark Puckett
}
}
}
} T. Markham Puckett, Ph.D.
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Date: Fri, 20 May 2011 22:31:46 -0500
Subject: [Microscopy] viaWWW:AC fields

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Email: dietz-at-anl.gov Name: Nancy

Organization: ANL

Title-Subject: [Filtered] AC fields

Message: Erase this text and type your question here
Has anyone effectively removed AC fields by shielding the
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magnetic field in question is around 1-3 mG. The alternative is an
expensive Helmholtz cage. Thank you.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 20 May 2011 22:32:10 -0500
Subject: [Microscopy] viaWWW:TEM: Bacterial sample preparation and staining

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Email: D.L.Bayliss-at-lboro.ac.uk Name: Danny Bayliss

Organization: Loughborough University

Title-Subject: [Filtered] TEM: Bacterial sample preparation and staining

Message: Hi All,
I wanted to prepare some bacteria in solution for TEM imaging.
Unfortunately at my university the people responsible for the TEM
havenÂ’t had experience in preparing biological samples so I am going it
alone. My question is regarding the best protocol for what I want to image.
I am inactivating bacteria (Listeria, gram positive) and trying to
understand the mechanism, so far SEM imaging reveals no visual
morphological damage but flow cytometry shows PI staining meaning there
is membrane damage, I would like to use TEM to visualise this membrane
damage.
I am looking for the best protocol that will help preserve and stain
the membrane. I understand fixing is probably best with Gluteraldehyde
then post fixing with Osmium Tetroxide (OSO4) but what is the best
buffer to use with these fixing agents? I have read that CaCl2 can help
to retain lipids that may be lost during fixing but I wanted some
guidance from people who have experience with preparing bacterial
samples for the best conditions.

For my second question I apologise in advance if this sounds like a
stupid question but I have also read protocols that suspend fixed
bacteria in agrose then centrifuge and allow the pellet to solidify. Is
this just to make the sample easier to manipulate for the subsequent
dehydration and embedding steps?

My last question is regarding staining, what is the best stain or stains
typically used for bacterial membranes to give a good contrast and when
is it best to stain? Do you commonly stain during fixing, before
dehydration or after embedding?

I look forward to hearing any advice you have to help me.

Thanks

Danny

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 20 May 2011 22:32:56 -0500
Subject: [Microscopy] viaWWW:TEM dislocation density measurement

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Email: z.zhou-at-lboro.ac.uk Name: Zhaoxia Zhou

Organization: Loughborough University UK

Title-Subject: [Filtered] TEM dislocation density measurement

Message: Greetings to all,

A student studying Ni-based super-alloys asked how to measure
dislocation densities using a 2000FX TEM.
I understand that grains can be tilted to certain orientations to make
dislocations visible/invisible, eventually the burgers vector of the
dislocations can be worked out. Does that mean at no orientation all the
dislocations are visible? How do we then quantify the density of
dislocations?
Any advice, references, books, manuals are highly appreciated.

Zhou
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 20 May 2011 22:33:35 -0500
Subject: [Microscopy] viaWWW:fluorescent probes and their hydrophobic/hydrophilic character

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Email: bloos-at-sun.ac.za Name: Ben Loos

Organization: Stellenbosch University

Title-Subject: [Filtered] fluorescent probes and their
hydrophobic/hydrophilic character

Message: Dear colleagues,

I trust you are well? May be some one of you can advice? What type of
fluorescent probes are of high hydrophobic and which ones of high
hydrophilic character? I get increasing users from the polymer science
field, where this information will be helpful.


could anyone advice?
a nice and narrow spectral ex/em pattern will of course be useful to
avoid bleedthrough.
thanks alot and best wishes
Ben

Dr Ben Loos Cell Imaging Unit -Fluorescence Live Cell Imaging & Flow
Cytometry- Central Analytical Facility-CAF Stellenbosch University -
South Africa Department of Physiological Sciences Mike de Vries Building
Office 2022 7600 Stellenbosch Tel: +27 21 808 9196 Fax:+27 21 808 3145
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From: tomas.hrncir-at-tescan.cz
Date: Mon, 23 May 2011 01:09:19 -0500
Subject: [Microscopy] Re: Penning gauge on Zeiss EVO MA10

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piper1960-at-hotmail.com wrote:
} On our Zeiss instrument (just over 1 year old) during pump down, the
} instrument gets to 9 Pa and progress seems to stop. Under "Vac status"
} it says "Waiting Penning." There were no error messages when
} initializing the software, and the green light on the Penning gauge is
} on. I am no expert, but I suspect that the vacuum system has pumped
} down as it should but the system can't read any signal from the
} Penning gauge and it won't allow the gun to fire.

Hello Mark,
this is the question for Zeiss service people, isn't it? Please
continue reading just in a case you have confidence in a friendly
competitor's advice :-).
As the pressure readout stops at 9 Pa, I do not think longer pumping
would help - such pressure is too high. Try to connect your external
gauge somewhere on the chamber or nearby. In a case you measure lower
pressure on your gauge, there is a problem related to the ignition of
the microscope penning gauge - just clean it or replace it. In a case
you will measure the same pressure at the external gauge, there is a
leak somewhere - in that case, you would probably observe overheating of
the turbomolecular pump after an extended pumping period.
However do not count these advices as absolutely correct and believe
more Zeiss advices :-).
Good luck,
Tomas

--
Tomas Hrncir, Ph.D.
R&D - Physics http://www.tescan.cz
Tescan +420 547130468 | tomas.hrncir-at-tescan.cz
Libusina trida 21 | 623 00 Brno | Czech Republic

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From: nizets2-at-yahoo.com
Date: Mon, 23 May 2011 03:57:22 -0500
Subject: [Microscopy] viaWWW:fluorescent probes and their

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Hi Ben!

I recommend you to have a look at the nice "Handbook" from Molecular probes.
Most fluorescent probes for cell biology are hydrophilic and the choice is
really big.
For hydrophobic/lipophilic probes you may look at "Probes for lipids and
membranes":

http://www.invitrogen.com/site/us/en/home/References/Molecular-Probes-The-Handbook/Probes-for-Lipids-and-Membranes.html


Also please consider other important parameters like the wavelengthes (for
optimal signal they must fit your lasers) and quantum yield.
I have no direct interest with molecular probes. I am just a regular customer of
their products for 15 years and always found them of very high quality (and
price, too).

Best regards,

Stephane




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Email: bloos-at-sun.ac.za Name: Ben Loos

Organization: Stellenbosch University

Title-Subject: [Filtered] fluorescent probes and their
hydrophobic/hydrophilic character

Message: Dear colleagues,

I trust you are well? May be some one of you can advice? What type of
fluorescent probes are of high hydrophobic and which ones of high
hydrophilic character? I get increasing users from the polymer science
field, where this information will be helpful.


could anyone advice?
a nice and narrow spectral ex/em pattern will of course be useful to
avoid bleedthrough.
  thanks alot and best wishes
Ben

  Dr Ben Loos Cell Imaging Unit -Fluorescence Live Cell Imaging & Flow
Cytometry- Central Analytical Facility-CAF Stellenbosch University -
South Africa Department of Physiological Sciences Mike de Vries Building
Office 2022 7600 Stellenbosch Tel: +27 21 808 9196 Fax:+27 21 808 3145
email: bloos-at-sun.ac.za website: http://academic.sun.ac.za/saf


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From: george.theodossiou-at-st-annes.ox.ac.uk
Date: Mon, 23 May 2011 05:35:05 -0500
Subject: [Microscopy] Digital Micrograph Scripting - Probe/Beam Control

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Hi All,

I'm using Vincent Hou's Image recorder script (posted on the University of Graz DM website) to capture ronchigrams and CBED patterns on a CCD and also ADF images via a Digiscan II.
Works well!!
Now what I want to do is scan the probe between image acquisitions. I don't want a stationary probe unless I'm recording the rochigram, CBED patterns. With the ADF signal I can synch the image recorder with the ADF refresh rate.
Does anyone have a script that controls the probe via the Digiscan or knows of a method to achieve this.

I've been told the way to do it is to define an ROI 1 pixel in size and scan this ROI.
I can find examples to define an ROI on the University of Graz website but nothing on actually controlling the beam or the ROI, ie the commands to use or a script that demonstrates this.

Any hints, help gratefully appreciated.

Cheers
George

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From: jheintz-at-wisc.edu
Date: Mon, 23 May 2011 07:32:42 -0500
Subject: [Microscopy] Microtome Advancement Issue

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Hello Listers,
I am using an RMC MT-7000 and recently I have replaced the belt that
connects the ~"Autocut" motor to the hand-wheel. As the hand-wheel is
rotated the specimen arm moves up and down but the specimen arm does
not advance. It can be clearly seen that the stepper motor is not
rotating as I manually move the hand-wheel, or use the Autocut
feature. I have confirmed that the stepper motor is
functioning(hitting the "Return" button or the "Step Advance" the
motor rotates in the correct fashion). Prior to replacing the belt the
microtome the specimen arm was advancing just fine. What have I mucked
up? Any help/advice will be greatly appreciated!

-Joe

--
Joseph Heintz
Lab/BBPIC Manager
University of Wisconsin-Madison
Room 1048, Animal Sciences Building
1675 Observatory Dr.
Madison, WI 53706
608.263.4162
BBPIC Facility Website

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 23 May 2011 09:38:12 -0500
Subject: [Microscopy] viaWWW:Online Hotel Reservations site for M&M meeting

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From: jsb43-at-cam.ac.uk
Date: Mon, 23 May 2011 10:39:10 -0500
Subject: [Microscopy] Re: TEM dislocation density measurement

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Dear Zhou,

Contrast from dislocations can only arise if the crystal is oriented in
such a way that the strain field scatters the Bloch waves set up by
diffraction. Although dislocation contrast in aluminium was discovered by
Peter Hirsch and co-workers back in 1956, Archie Howie and Michael Whelan
explained the dynamical diffraction contrast of imperfect crystals with
phenomenal results. Much of this is contained within what is considered to
the 'The Bible' of electron microscopy: "Electron Microscopy of Thin
Crystals" by Hirsch, Howie, Whelan, Pashley & Nicholson. Several different
editions of the book exist and it is still highly recommended as a text
book. Mike Loretto's book "Defect Analysis in Electron Microscopy" is a
shorter, and in some ways more accessible book to consult, with helpful
diffraction patterns and Kikuchi line maps in the Appendices that assist
navigation to the required diffraction conditions. More recent books
include Barry Carter & David Williams "Transmission Electron Microscopy"
which is aided by a selection of some the the most beautiful pictures of
defects to have appeared in the past 55 years. Some of the best images
seared into my mind date back from the 1970's!

All of these books (and many more) will tell you that successful
dislocation analysis requires setting up well known diffraction conditions
for each crystal grain. Therefore, no single orientation can give you all
the information you want.

Identifying dislocation Burgers vectors requires multiple images of the
same set of dislocations under diffraction conditions to see which ones
disappear, i.e. dislocations are identified by a process of elimination.
However, it is reasonably straightforward to find a set of reflections in
which all dislocations will eventually appear. Therefore, the dislocation
density can established only if all crystal grains have each diffracted
strongly with several different reflections. It is painstaking to do, but
is worth the effort.

With a microscope like the JEOL 2000FX, it should be relatively easy and
fun to do- the JEOL 2000FX still remains one of my favourite microscopes to
do this sort of work, because the condenser optics gives a very bright
beam, even for a thermionic emitter. Dislocation 'hunting' on the 2000FX is
probably one of the more enjoyable things one can do on a TEM. Happy
hunting!

Jon

} Email: z.zhou-at-lboro.ac.uk Name: Zhaoxia Zhou
} Organization: Loughborough University UK
} Title-Subject: [Filtered] TEM dislocation density measurement
}
} Message: Greetings to all,
}
} A student studying Ni-based super-alloys asked how to measure
} dislocation densities using a 2000FX TEM.
} I understand that grains can be tilted to certain orientations to make
} dislocations visible/invisible, eventually the burgers vector of the
} dislocations can be worked out. Does that mean at no orientation all the
} dislocations are visible? How do we then quantify the density of
} dislocations?
} Any advice, references, books, manuals are highly appreciated.
}
} Zhou


==============================Original Headers==============================
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From: stefan.diller-at-t-online.de
Date: Mon, 23 May 2011 11:01:53 -0500
Subject: [Microscopy] Re: Microtome Advancement Issue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Joe,
if your encoder on the shaft which drives the up and down movement of the microtome cutting arm is misaligned and not in the mid
of the stroke: this will disturb the microcontroller and it won`t send an advance signal.

Check for the alignment of the decoder (left hand side of the shaft...). Be sure that either when the knob on the handwheel is at
"3 o`clock" or the cutting arm is at the knife edge, the VISUTRAC should be in the mid of the LED scale.

If not you have to readjust the decoder (hopefully you did not ruin it during changing the drive-belts because it is very fragile
and the distance between the encoder disc and the infrared LEDs should be set very precisely... You need a VERY small ALLEN key to
do this ;-)

It might also be an electronics problem but I doubt this when you can advance manually...
I send more information offline.

Feel free to contact dave-at-boeckeler.com for more help.

Best wishes,
Stefan


-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 23.05.11 14:36, schrieb jheintz-at-wisc.edu:
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}
} Hello Listers,
} I am using an RMC MT-7000 and recently I have replaced the belt that
} connects the ~"Autocut" motor to the hand-wheel. As the hand-wheel is
} rotated the specimen arm moves up and down but the specimen arm does
} not advance. It can be clearly seen that the stepper motor is not
} rotating as I manually move the hand-wheel, or use the Autocut
} feature. I have confirmed that the stepper motor is
} functioning(hitting the "Return" button or the "Step Advance" the
} motor rotates in the correct fashion). Prior to replacing the belt the
} microtome the specimen arm was advancing just fine. What have I mucked
} up? Any help/advice will be greatly appreciated!
}
} -Joe
}

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 23 May 2011 16:52:57 -0500
Subject: [Microscopy] viaWWW:seeking fluorescence for Olympus IMT-2

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Email: michael.cammer-at-med.nyu.edu Name: michael cammer

Organization: Skirball Institute at NYU Langone Medical College

Title-Subject: [Filtered] seeking fluorescence for Olympus IMT-2

Message: We have a stripped down Olympus IMT-2 that people have been
using for screening their cell cultures. Colleagues have requested
fluorescence on this microscope.

Does anyone have an illumination pillar and arc lamp for this microscope
that they, perhaps, don't need? Also, any extra filter blocks (we have
one)? We'd also welcome inexpensive proposals for commerical solutions.
Please contact off-line at michael.cammer-at-med.nyu.edu.

Thank you!

Sincerely,

Michael

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From: ruscid2-at-rpi.edu
Date: Mon, 23 May 2011 17:30:38 -0500
Subject: [Microscopy] Free JEOL JXA 733 microprobe

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi -
We are giving away a JEOL JXA 733 microprobe. I believe it is working (except for the EDS detector). It is free as long as interested parties arrange to pick it up. Please let me know if you are interested.
-Dan

-----------------------------------
Dan Ruscitto

Laboratory Manager
1W13 Jonsson-Rowland Science Center
Earth & Environmental Sciences
Rensselaer Polytechnic Institute
110 8th St.
Troy NY 12180
Ph: 518-276-2372
Fax: 518-276-2012







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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 24 May 2011 01:37:21 -0500
Subject: [Microscopy] viaWWW: Sample prep of Pseudomonas Aeruginosa

Contents Retrieved from Microscopy Listserver Archives
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Email: ram-at-cen.dtu.dk Name: Ramona

Organization: DTU Cen

Title-Subject: [Filtered] Sample prep of Pseudomonas Aeruginosa

Message: Dear all,
I was wondering if any of you have experience with preparation of
Pseudomonas Aeruginosa samples grown on Agar plates for SEM. I am
interested in being able to have a bit of the Agar substrate with the
bacteria in the SEM. We are able to do LVSEM, ESEM, Peltier, Cryo SEM
and even TEM; so whatever protocol, article review and experience will
be appreciated :-)
Regards,
Ramona

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From: allan.mitchell-at-stonebow.otago.ac.nz
Date: Tue, 24 May 2011 04:08:21 -0500
Subject: [Microscopy] Re: viaWWW: Sample prep of Pseudomonas Aeruginosa

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Ramona

Check out "Ultrastructural preservation of biofilms formed by non-typeable Hemophilus influenzae"
P. Webster, S. Wu , S. Webster, K.A.Rich and K. McDonald. Biofilms (2004) 1, 165–182, for a great SEM method.

and also

"High-Resolution Visualization of Pseudomonas aeruginosa PAO1 Biofilms by Freeze-Substitution Transmission
Electron Microscopy" Ryan C. Hunter* and Terry J. Beveridge, for interesting stuff about Pseudomonas aeruginosa
Journal of Bacteriology , Nov. 2005, p. 7619–7630 Vol. 187, No. 22

Let me know if you have trouble getting them and I will send you the PDF's.

Good luck

Allan

On 24/05/2011, at 6:46 PM, {microscopylistserver-noreply-at-microscopy.com} {microscopylistserver-noreply-at-microscopy.com} wrote:

}
}
}
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} Email: ram-at-cen.dtu.dk Name: Ramona
}
} Organization: DTU Cen
}
} Title-Subject: [Filtered] Sample prep of Pseudomonas Aeruginosa
}
} Message: Dear all,
} I was wondering if any of you have experience with preparation of
} Pseudomonas Aeruginosa samples grown on Agar plates for SEM. I am
} interested in being able to have a bit of the Agar substrate with the
} bacteria in the SEM. We are able to do LVSEM, ESEM, Peltier, Cryo SEM
} and even TEM; so whatever protocol, article review and experience will
} be appreciated :-)
} Regards,
} Ramona
}
} Login Host: 130.225.78.18
} ---------------------------------------------------------------------------
}

Allan Mitchell
Microscopy Otago - Electron Microscopy
c/- Department of Anatomy
Otago School of Medical Sciences
P.O. Box 913
Dunedin
New Zealand

Phone (03) 479 5642 or 479 7301
Fax (03) 479 5086 or 479 7254

EM Centre: http://ocem.otago.ac.nz/
Confocal Centre: http://occm.otago.ac.nz/
NZ Microscopy Society: http://microscopynz.co.nz/






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From: rintugr-at-gmail.com
Date: Thu, May 19, 2011 at 2:46 PM
Subject: [Microscopy] EBSD question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Many thanks to everyone for taking the time to answer my question
regarding the EBSD use. I received a lot of great answers. I will
forward all the replies to the grad student and he might contact you
in the future.

Thanks again. The listserve is truly a fantastic resource.

Soumitra

University of South Carolina



---------- Forwarded message ----------
X-from: {rintugr-at-gmail.com}

Dear Colleagues,

An engineering graduate student would like to use the EBSD system
which is in our Zeiss Ultraplus thermal FESEM to get some data from
his sample. He thinks EBSD is the best solution. However, I have no
expertise in EBSD analysis, so any help in this matter will be very
much appreciated. I have placed two powerpoint slides in my dropbox
for people to view. Please click on the link below or cut and paste
the URL on your web browser to see the diagram and what he wants to do
with his sample.

http://dl.dropbox.com/u/7737489/EBSD.ppt

Thanks in advance.

Soumitra

************************************************************
Soumitra Ghoshroy
Director, Electron Microscopy Center
Research Professor, Biology
University of South Carolina
715 Sumter Street
Columbia, SC 29208
803-777-7085 (office)
803-777-8908 (fax)
http://www.emc.sc.edu

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6, 30 -- Subject: EBSD question
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20, 33 -- Subject: [Microscopy] EBSD question, Thank you
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From: swalck-at-southbaytech.com
Date: Tue, 24 May 2011 11:40:20 -0500
Subject: [Microscopy] Penning gauge on Zeiss EVO MA10

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Your system may, in fact, be pumped down. If you have a turbo pumped system
and the turbo is at full speed, then you have high vacuum. We have a cold
cathode system in one of our systems that we sell. This is a Penning gauge.
Every once in a while, a customer will call and tell us that the system is
not going below a certain value. The gauge that we have is actually a dual
gauge with a cross over point. The value that it is reading is the minimum
pressure that the high pressure gauge can read. This sounds similar to what
you are experiencing. There is a cure that the manufacturer of the gauge
gave us that almost always works.

Take the gauge off of the system. Holding the gauge firmly in your hand,
strike the gauge hard onto a telephone book hard several times with the
flange of the gauge hitting the book. We really whack it to do this.

Why does it work? The Penning cell is actually sputtering material inside
the gauge. Sometimes a flake can drop across the collector or short out the
high voltage. Whacking it dislodges the flake. With the higher pressures
that the EVO system can operate at, you will have more sputtering in the
gauge that you will have at lower pressures.

You better check with the manufacturer prior to doing this procedure.

-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

eMail: SWalck-at-SouthBayTech.com
Phone: 949-492-2600
Toll Free: 1-800-728-2233 (USA)
Fax: 949-492-1499

www.SouthBayTech.com



-----Original Message-----
X-from: piper1960-at-hotmail.com [mailto:piper1960-at-hotmail.com]
Sent: Friday, May 20, 2011 1:33 PM
To: swalck-at-southbaytech.com


Hi All,

Sorry if you received the message twice.

On our Zeiss instrument (just over 1 year old) during pump down, the
instrument gets to 9 Pa and progress seems to stop. Under "Vac status" it
says "Waiting Penning." There were no error messages when initializing the
software, and the green light on the Penning gauge is on. I am no expert,
but I suspect that the vacuum system has pumped down as it should but the
system can't read any signal from the Penning gauge and it won't allow the
gun to fire.

This was the first time the tool has been started since the terrible weather
we had in Alabama on April 27th and we lost power for several hours (it was
on Standby when the power went out). I have turned off the tool and
restarted it several times, but always with the same problem. Again, there
appears to be no damage and there are no error messages.

Any suggestions on what the problem may be would be greatly appreciated.

Thank you,

Mark Puckett



T. Markham Puckett, Ph.D.


Associate Professor of Geology


Department of Physics and Earth Science


P.O. Box 5130


University of North Alabama


Florence, Alabama 35632-0001




"Why, sometimes I've believed as many as six impossible things before
breakfast." The White Queen to Alice, Through the Looking-Glass


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41, 23 -- Subject: RE: [Microscopy] Penning gauge on Zeiss EVO MA10
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From: vray-at-partbeamsystech.com
Date: Tue, 24 May 2011 22:07:28 -0500
Subject: [Microscopy] Re: Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Catching up with e-mail....

I fully agree with Ken - an all-inclusive (parts and labor) service
contract, priced around 10% of the new instrument cost, is about right
to keep most FIBs and SEMs running at OEM-spec level virtually
indefinitely, but surely for 10+ years after the formally-declared EOL.
Cost may get higher by 2% - 3% if the instrument is *very* old (20+
years) or if the customer with a single tool is located very remotely
from the service organization. It is also reasonable for customer to
expect that if FIB/SEM tool is covered by all-inclusive service
contract, then its consumable parts should be provided at significant
discount comparatively to the open-market prices.

The obvious dilemma "do I keep spending money on servicing this tool, or
do I run it to ground and get a new one in a couple of years" is a
business decision which everyone makes based on his/her/institution
financial situation.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 5/17/2011 9:00 AM, kenconverse-at-qualityimages.biz wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Rosemary,
} Your confocal sounds about right, although with only about a 25% increase
} over 10 years, I think you can count your blessings.
}
} As for your ESEM, I should think the terms should look very much like your
} confocal contract. Are they claiming that all the break-downs were caused
} by mis-use and abuse? If that were the case, they shouldn't have covered
} the repairs even under warranty. On the other hand, if the failures were
} due to their poor design and construction, they certainly have a lot of
} nerve implying that your contract is being increased because of that. I'm
} also very surprised that parts are not covered. To me, that is not a
} service contract, particularly for a new instrument. It can be
} understandable for very old instruments, but should be reflected in the
} pricing.
}
} Whoever the vendor is, I would certainly have a hard time recommending them
} to anyone, given the situation you describe.
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: rosemary.white-at-csiro.au [mailto:rosemary.white-at-csiro.au]
} Sent: Monday, May 16, 2011 10:01 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] Re: Microscope service strategies - numbers
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Dear all,
}
} Just to get some numbers here, how much is reasonable for a service
} contract? 10% of original cost of the instrument? 15% of cost?
}
} We have a service contract on one instrument (confocal) that was (10 years
} ago) about 8% of original cost, now is about 10%. This is essentially a
} full extended warranty, and includes an annual service visit, unlimited
} emergency callouts and all replacement parts, even lasers are included.
} It's been great. I don't think they have this type of contract for new
} instruments, though©
}
} However, for a new instrument (ESEM) from a different supplier, we were
} quoted about 15% of the original cost for a contract with 2 annual
} maintenance visits plus unlimited emergency callouts, but no coverage of
} replacement parts. For 2 maintenance visits and 2 emergency callouts but
} no parts the cost went down to about 8% of initial cost. The reason given
} for the cost was that we had many breakdowns in the 12 month warranty
} period (2 mother boards, 3 different Peltier stages, 2 BSE detectors,
} computer fan blew up, etc, etc), and they had to factor this in.
} Considering the presumed reliability of SEMs compared to confocals (in my
} experience before this new instrument), and that no parts were covered, it
} seemed quite expensive.
}
} Is the latter about what you'd expect to pay for a service contract?
}
} Thanks,
} Rosemary White
}
} Dr Rosemary White
} CSIRO Plant Industry
} GPO Box 1600
} Canberra, ACT 2601
} Australia
}
} T 61 2 6246 5475
} F 61 2 6246 5334
} E rosemary.white-at-csiro.au
}
}
}
}
}
}
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} 13, 32 -- Subject: Re: Microscope service strategies - numbers
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} 26, 28 -- To: {rosemary.white-at-csiro.au} , "MSA Listserver" {microscopy-at-microscopy.com}
} 26, 28 -- Subject: RE: [Microscopy] Re: Microscope service strategies - numbers
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From: marcello.serracino-at-igag.cnr.it
Date: Wed, 25 May 2011 08:50:16 -0500
Subject: [Microscopy] UV-Glue Conloc

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi-
Does anyone know if CONLOC UV-Glue type 665 fixing samples can
affect or contaminate the microprobe?
I would appreciate any suggestion.

Best Regards

Marcello Serracino



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From: john.robson-at-boehringer-ingelheim.com
Date: Wed, 25 May 2011 09:50:10 -0500
Subject: [Microscopy] Re: Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The 10% rule would value a service contract at $50K- $60K to maintain an SEM
with a purchase price of $500K - $600K. That sounds somewhat unjustifiably
high assuming your proximity to the service technician doesn't entail
extensive travel time/costs. In my opinion the 10% formula doesn't track
very well as the purchase price of the instrument increases from entry level
to "top of the line". I have maintained 2 somewhat costly FESEMs over the
past 20+ years and in my experience their service history and cost of
ownership don't support the 10% rule. The cost to maintain a high end system
is only marginally higher than a less costly entry level model yet the 10%
rule could easily double the service contract price.


John A. Robson

-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Tuesday, May 24, 2011 11:17 PM
To: Robson,John (AN) BIP-US-R

Catching up with e-mail....

I fully agree with Ken - an all-inclusive (parts and labor) service
contract, priced around 10% of the new instrument cost, is about right
to keep most FIBs and SEMs running at OEM-spec level virtually
indefinitely, but surely for 10+ years after the formally-declared EOL.
Cost may get higher by 2% - 3% if the instrument is *very* old (20+
years) or if the customer with a single tool is located very remotely
from the service organization. It is also reasonable for customer to
expect that if FIB/SEM tool is covered by all-inclusive service
contract, then its consumable parts should be provided at significant
discount comparatively to the open-market prices.

The obvious dilemma "do I keep spending money on servicing this tool, or
do I run it to ground and get a new one in a couple of years" is a
business decision which everyone makes based on his/her/institution
financial situation.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 5/17/2011 9:00 AM, kenconverse-at-qualityimages.biz wrote:
}
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}
} Hi Rosemary,
} Your confocal sounds about right, although with only about a 25% increase
} over 10 years, I think you can count your blessings.
}
} As for your ESEM, I should think the terms should look very much like your
} confocal contract. Are they claiming that all the break-downs were caused
} by mis-use and abuse? If that were the case, they shouldn't have covered
} the repairs even under warranty. On the other hand, if the failures were
} due to their poor design and construction, they certainly have a lot of
} nerve implying that your contract is being increased because of that. I'm
} also very surprised that parts are not covered. To me, that is not a
} service contract, particularly for a new instrument. It can be
} understandable for very old instruments, but should be reflected in the
} pricing.
}
} Whoever the vendor is, I would certainly have a hard time recommending them
} to anyone, given the situation you describe.
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: rosemary.white-at-csiro.au [mailto:rosemary.white-at-csiro.au]
} Sent: Monday, May 16, 2011 10:01 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] Re: Microscope service strategies - numbers
}
}
}
}
}
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}
} Dear all,
}
} Just to get some numbers here, how much is reasonable for a service
} contract? 10% of original cost of the instrument? 15% of cost?
}
} We have a service contract on one instrument (confocal) that was (10 years
} ago) about 8% of original cost, now is about 10%. This is essentially a
} full extended warranty, and includes an annual service visit, unlimited
} emergency callouts and all replacement parts, even lasers are included.
} It's been great. I don't think they have this type of contract for new
} instruments, though(c)
}
} However, for a new instrument (ESEM) from a different supplier, we were
} quoted about 15% of the original cost for a contract with 2 annual
} maintenance visits plus unlimited emergency callouts, but no coverage of
} replacement parts. For 2 maintenance visits and 2 emergency callouts but
} no parts the cost went down to about 8% of initial cost. The reason given
} for the cost was that we had many breakdowns in the 12 month warranty
} period (2 mother boards, 3 different Peltier stages, 2 BSE detectors,
} computer fan blew up, etc, etc), and they had to factor this in.
} Considering the presumed reliability of SEMs compared to confocals (in my
} experience before this new instrument), and that no parts were covered, it
} seemed quite expensive.
}
} Is the latter about what you'd expect to pay for a service contract?
}
} Thanks,
} Rosemary White
}
} Dr Rosemary White
} CSIRO Plant Industry
} GPO Box 1600
} Canberra, ACT 2601
} Australia
}
} T 61 2 6246 5475
} F 61 2 6246 5334
} E rosemary.white-at-csiro.au
}
}
}
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 25 May 2011 09:52:07 -0500
Subject: [Microscopy] viaWWW:Immunogold with SEM

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Email: vakimler-at-med.wayne.edu Name: Vickie Kimler

Organization: Wayne State University School of Medicine

Title-Subject: [Filtered] Immunogold with SEM

Message: Does anyone know of literature references or vendor technical
notes that mentions labelling of surface antigens on cells in tissue
explants?
I am looking for large probes (~ 100 nm)for SEM studies.
Thanks,
Vickie

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 25 May 2011 09:52:42 -0500
Subject: [Microscopy] viaWWW:Ultramicrotome service

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Email: wadowska-at-upei.ca Name: Dorota Wadowska

Organization: Atlantic Veterinary College at UPEI

Title-Subject: [Filtered] Ultramicrotome service

Message: Hi, I am looking for a service for our Reichert-Jung Ultracut E
microtome in Maritime area, Canada. Our ultramicrotomes are in need of a
tune up or more.
Thank you Dorota

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 25 May 2011 09:53:19 -0500
Subject: [Microscopy] viaWWW:Sales Specialist - FLORIDA

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Email: david.springett-at-spotimaging.com Name: David Springett

Organization: Diagnostic Instruments

Title-Subject: [Filtered] Sales Specialist - FLORIDA

Message: We have an opening in our Florida territory for a Sales
Specialist - selling digital cameras, grossing imaging systems and
microscopes.
Experience in the technology and in sales preferred.

If you are interested please contact me.
Thank you

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From: PhillipsT-at-missouri.edu
Date: Wed, 25 May 2011 11:07:25 -0500
Subject: [Microscopy] RE: viaWWW:Immunogold with SEM

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I would recommend using nanogold labeled probes followed by gold enhancement. The Nanoprobes kit worked great for us - see: Meagher, C.K., H. Liu, C.P. Moore, and T.E. Phillips. 2005. Conjunctival M cells selectively bind and translocate Maackia amurensis leukoagglutinin. Experimental Eye Research= 80(4):545-553.


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/




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From: mullarkay-at-gmail.com
Date: Wed, 25 May 2011 12:30:04 -0500
Subject: [Microscopy] TEM Job Opening

Contents Retrieved from Microscopy Listserver Archives
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The College of Nanoscale Science and Engineering (CNSE) seeks to hire
a research scientist in the area of aberration-corrected transmission
electron microscopy (TEM). Duties will include, but not be limited to:
managing the FEI Titan TEM facility, and working closely with the CNSE
faculty, staff and strategic partners to develop new methodologies for
nanomaterials analysis and semiconductor metrology. Effort will be
split between advanced applications support and advanced technique
development.

For more details and to apply please go to:

http://cnse.albany.edu/Careers/Details.aspx?career_id=5bc6fbf0-d91c-4057-b852-3312acc0b58a



Thomas M. Murray, Ph.D.
Senior Research Support Specialist / Instructor
College of Nanoscale Science & Engineering
University at Albany-SUNY
251 Fuller Rd.
Albany, NY 12203

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From: vray-at-partbeamsystech.com
Date: Wed, 25 May 2011 16:37:02 -0500
Subject: [Microscopy] Microscope service strategies - numbers

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Hi John,

The 10% rule applies to all-inclusive support by external organization
and must sustain existence of such service organization, cover all
costs, risks, and provide reasonable profit. The amount of $50K - $60K
per year are about right, it will be hard to sustain business of the
support organization otherwise.

Of cause, you can do self-service and keep tools running at much lower
costs: for a while, on some instruments, and with higher risks. That is
a business decision made by many and it may be justified in your
particular situation. Just understand clearly what are the risks that
you are taking and accept the fact that whatever happens you are (or
your institution) will be on your (its) own.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 5/25/2011 10:49 AM, john.robson-at-boehringer-ingelheim.com wrote:
} The 10% rule would value a service contract at $50K- $60K to maintain an SEM
} with a purchase price of $500K - $600K. That sounds somewhat unjustifiably
} high assuming your proximity to the service technician doesn't entail
} extensive travel time/costs. In my opinion the 10% formula doesn't track
} very well as the purchase price of the instrument increases from entry level
} to "top of the line". I have maintained 2 somewhat costly FESEMs over the
} past 20+ years and in my experience their service history and cost of
} ownership don't support the 10% rule. The cost to maintain a high end system
} is only marginally higher than a less costly entry level model yet the 10%
} rule could easily double the service contract price.
}
}
} John A. Robson
}
} -----Original Message-----
} From: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} Sent: Tuesday, May 24, 2011 11:17 PM
} To: Robson,John (AN) BIP-US-R
} Subject: [Microscopy] Re: Microscope service strategies - numbers
}
}
}
}
} ----------------------------------------------------------------------------
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}
} Catching up with e-mail....
}
} I fully agree with Ken - an all-inclusive (parts and labor) service
} contract, priced around 10% of the new instrument cost, is about right
} to keep most FIBs and SEMs running at OEM-spec level virtually
} indefinitely, but surely for 10+ years after the formally-declared EOL.
} Cost may get higher by 2% - 3% if the instrument is *very* old (20+
} years) or if the customer with a single tool is located very remotely
} from the service organization. It is also reasonable for customer to
} expect that if FIB/SEM tool is covered by all-inclusive service
} contract, then its consumable parts should be provided at significant
} discount comparatively to the open-market prices.
}
} The obvious dilemma "do I keep spending money on servicing this tool, or
} do I run it to ground and get a new one in a couple of years" is a
} business decision which everyone makes based on his/her/institution
} financial situation.
}
} Cheers :)
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
}
} On 5/17/2011 9:00 AM, kenconverse-at-qualityimages.biz wrote:
} }
} ----------------------------------------------------------------------------
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} }
} } Hi Rosemary,
} } Your confocal sounds about right, although with only about a 25% increase
} } over 10 years, I think you can count your blessings.
} }
} } As for your ESEM, I should think the terms should look very much like your
} } confocal contract. Are they claiming that all the break-downs were caused
} } by mis-use and abuse? If that were the case, they shouldn't have covered
} } the repairs even under warranty. On the other hand, if the failures were
} } due to their poor design and construction, they certainly have a lot of
} } nerve implying that your contract is being increased because of that. I'm
} } also very surprised that parts are not covered. To me, that is not a
} } service contract, particularly for a new instrument. It can be
} } understandable for very old instruments, but should be reflected in the
} } pricing.
} }
} } Whoever the vendor is, I would certainly have a hard time recommending them
} } to anyone, given the situation you describe.
} }
} } Ken Converse
} } owner
} }
} } QUALITY IMAGES
} } Servicing Scanning Electron Microscopes
} } Since 1981
} } 474 So. Bridgton Rd.
} } Bridgton, ME 04009
} } 207-647-4348
} } kenconverse-at-qualityimages.biz
} } qualityimages.biz
} }
} }
} } -----Original Message-----
} } X-from: rosemary.white-at-csiro.au [mailto:rosemary.white-at-csiro.au]
} } Sent: Monday, May 16, 2011 10:01 PM
} } To: kenconverse-at-qualityimages.biz
} } Subject: [Microscopy] Re: Microscope service strategies - numbers
} }
} }
} }
} }
} }
} ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
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} ----------------------------------------------------------------------------
} }
} } Dear all,
} }
} } Just to get some numbers here, how much is reasonable for a service
} } contract? 10% of original cost of the instrument? 15% of cost?
} }
} } We have a service contract on one instrument (confocal) that was (10 years
} } ago) about 8% of original cost, now is about 10%. This is essentially a
} } full extended warranty, and includes an annual service visit, unlimited
} } emergency callouts and all replacement parts, even lasers are included.
} } It's been great. I don't think they have this type of contract for new
} } instruments, though(c)
} }
} } However, for a new instrument (ESEM) from a different supplier, we were
} } quoted about 15% of the original cost for a contract with 2 annual
} } maintenance visits plus unlimited emergency callouts, but no coverage of
} } replacement parts. For 2 maintenance visits and 2 emergency callouts but
} } no parts the cost went down to about 8% of initial cost. The reason given
} } for the cost was that we had many breakdowns in the 12 month warranty
} } period (2 mother boards, 3 different Peltier stages, 2 BSE detectors,
} } computer fan blew up, etc, etc), and they had to factor this in.
} } Considering the presumed reliability of SEMs compared to confocals (in my
} } experience before this new instrument), and that no parts were covered, it
} } seemed quite expensive.
} }
} } Is the latter about what you'd expect to pay for a service contract?
} }
} } Thanks,
} } Rosemary White
} }
} } Dr Rosemary White
} } CSIRO Plant Industry
} } GPO Box 1600
} } Canberra, ACT 2601
} } Australia
} }
} } T 61 2 6246 5475
} } F 61 2 6246 5334
} } E rosemary.white-at-csiro.au
} }
} }
} }
} }
} }
} }
} } ==============================Original
} Headers==============================
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} } 2011
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From: steven.samuelsson-at-sri.com
Date: Wed, 25 May 2011 19:23:07 -0500
Subject: [Microscopy] C/Si material for thin-X TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Listserver Community:

I appreciate your tips on best methods for TEM imaging of a C/Si
material. It is prepared for me as a spread over a glass microscope
slide. Will need to peel it off the slide for processing for thin
sectioning TEM. It has been suggested that cooling/freezing and
fracturing the material might be another method for thinning. Are there
protocols that readers can guide me to for such samples?

Thanks so much,

Steve

--
Steven Samuelsson, PhD
Director
Cell and Molecular Imaging Facility
100-51
SRI International, Inc.
333 Ravenswood Ave
Menlo Park, CA 94061
(650) 859-2980


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From: andrewb-at-vsl.cua.edu
Date: Wed, 25 May 2011 20:17:04 -0500
Subject: [Microscopy] Microscopy Position avalilable at Catholic University of America

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Full-time Electron Microscopy Analyst and Microscopy Laboratory
Supervisor position available at The Catholic University of America,
Washington, DC

Position Summary: This position supports the research and teaching efforts
of The Vitreous State Laboratory and the Physics Department by supervising
the Scanning Electron Microscopy (SEM) facility, and by producing, reporting
and filing data from SEM examination of specimens submitted by managers
of various laboratory research projects. Energy Dispersive Spectroscopy
(EDS), Wavelength Dispersive Spectroscopy (WDS), and image analysis
are available and employed in specimen characterization. The majority of
facility work is generated by our nuclear waste-glass research program. The
position also involves the instruction of lab employees and students in the
use of the SEM´s and associated equipment, of visible light-optical
microscopes, of sample preparation equipment and techniques, and the
development and maintenance of protocols for the safe use of the
equipment and chemicals related to electron microscopy. The facility is
responsible for the performing and evaluating the Vapor Hydration Test
(VHT) (ASTM C1663-09) on selected candidate waste-glass compositions to
evaluate their resistance to aqueous corrosion.

Description: Full-time permanent position.

Minimum Qualifications: Masters degree in Physics, Chemistry, Geology,
Materials Science or a closely related field. A lesser degree may suffice with
specialized education and work experience in microscopy. Work
Experience: A minimum of 3 years experience in the operation and routine
maintenance of electron microscopes, light-optical microscopes and
metallographic sample preparation equipment. At least one year of
supervisory experience, or demonstrated supervisory skills and experience
in laboratory management and procedures. Transmission Electron
Microscopy (TEM) skills and experience desirable.

Submit application and CV to Dr. Andrew Buechele
buechele-at-cua.edu
Vitreous State Laboratory
409 Hannan Hall
Cardinal Station
Washington, DC 20064



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From: oshel1pe-at-cmich.edu
Date: Thu, 26 May 2011 07:36:19 -0500
Subject: [Microscopy] RE: viaWWW:Immunogold with SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Vickie,

See:
http://www.ansci.wisc.edu/facstaff/Faculty/pages/albrecht/albrecht_web/Programs/microscopy/s900.html

There are references with the images.
More images at:
http://www.ansci.wisc.edu/facstaff/Faculty/pages/albrecht/albrecht_web/Programs/microscopy/gallery.html

Imaging colloidal-gold conjugated antibodies on cell surface antigens in the SEM is quite doable. Depending on the SEM. You do need a good low-voltage FESEM and a high quality backscatter detector, one that works well at low voltages.

A "standard" SEM could see 100 nm targets, but that is really huge for labelling surface antigens. There will be lots of problems with such a large probe. Even getting proper labelling will be an issue.
Do you have access to a good field-emission SEM with a Good BSE detector? If yes, then you can use 10 nm or smaller particles, 18 nm particles easily.
If you don't have this access, then you might want to think of a different approach.

Phil

Philip Oshel
Central Michigan University

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Email: vakimler-at-med. wayne.edu Name: Vickie Kimler

Organization: Wayne State University School of Medicine

Title-Subject: [Filtered] Immunogold with SEM

Message: Does anyone know of literature references or vendor technical
notes that mentions labelling of surface antigens on cells in tissue
explants?
I am looking for large probes (~ 100 nm)for SEM studies.
Thanks,
Vickie

Login Host: 146.9.22.4
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From: frank_karl-at-ardl.com
Date: Thu, 26 May 2011 09:21:10 -0500
Subject: [Microscopy] Zeiss photomicroscopeIII

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Valery,

Question: Based upon what information, other than the 10% rule, have you
arrived at the conclusion that $50k - %60 is a reasonable amount? I never
mentioned which SEM I was running, the service history of the SEM / facility,
or what materials were being examined? An across the board determination
fails to consider several risks associated with each instrument.

I totally agree that a service organization needs to turn a profit and
investors should have every expectation that they have made a wise
investment. I also agree that there is a degree of uncertainty with regards
to the liability associated with equipment failure. Costs associated with
both technician time (and travel/housing/food costs) and replacement parts is
a gamble for the service provider, although a larger customer base mitigates
the risk. In fact a case could easily be made that lower cost service
contracts with a higher customer base could lead to greater profits.
However, my comments with regards to a sweeping across the board 10% rule
actually goes to the financial risks associated with each type of instrument.
Customers with high cost instruments, with only a slightly higher cost of
maintenance, shouldn't bare the brunt of the service organizations profits.
The price of a service contract should be determined by the actual costs to
maintain the tool with a reasonable amount of profit tacked on to the bill.
This does vary by instrument type and design but doesn't track very well with
purchase price of the equipment. Suppose you're in a multi-user facility
with a track record of heavy handed use leading to frequent repairs? Perhaps
you work with materials that require frequent visits to clean up a messy
column? Either situation could, and does, result in multiple years where
service costs exceed 10%? Does the 10% rule still apply? I suppose if
you're running the lab it sounds about right! :-)

However, going back to the original posting in this thread, it sounds like
Rosemary White's instrument isn't very reliable and her facility is being
extorted by the manufacturer. If I were in the market for a new ESEM I would
contact her off line, you might want to get the name of that company! But it
does go straight to the heart of my argument regarding "10%". Her service
provider has crunched the numbers and for her particular failure prone ESEM
they need to charge 15% to keep their organization going!

My experience has been that service contract costs, for the high ticket
instruments (that work!), don't track with the 10% rule. And my service
company has still managed to turn a profit from my site every year for 20
years.

John A. Robson

-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Wednesday, May 25, 2011 5:37 PM
To: Robson,John (AN) BIP-US-R
Cc: microscopy-at-microscopy.com

Hello everyone,
I need the collective wisdom of the list server: I have a badly cared for Zeiss Photomicroscope III (the universal stand, I believe), which I recently inherited.

Taking it apart I have discovered it appears to be set up for reflected fluorescence and transmitted phase. (It is missing the large Hg burner used for fluorescence.) It's a very cool scope, once set up for 35mm film, but I need a pol scope for particle identification. I also need a trinocular head.

My question is, is there anyone who refurbishes these scopes and can supply the needed parts to convert the scope to polarized light.

Thanks ................

Frank


Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



________________________________
This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.


==============================Original Headers==============================
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From: FMonson-at-wcupa.edu
Date: Thu, 26 May 2011 11:04:15 -0500
Subject: [Microscopy] Zeiss photomicroscopeIII

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Frank,

About Pol Scopes: http://earth2geologists.net/Microscopes/ [with links]
http://cgi.ebay.com/Professional-Zeiss-Polarization-Microscope-5-objectives-/140455050865 [ebay]

LED fluorescence: http://www.thorlabs.com/NewGroupPage9.cfm?ObjectGroup_ID=2615&gclid=CMyuotj6hakCFUM65Qodvidgqw
here you get the excitation you want with long life [I have no experience with LED UV, but I see it mor and more]
http://www.viewsfromscience.com/documents/webpages/led_fluorescence.html [strange & homemade, but???]
http://www.mightexsystems.com/family_info.php?cPath=187&categories_id=187

Google strings: {LED fluorescent microscope illuminators} ; and {used Zeiss microscopes} [quick search, NO hits, but I didn't need anything Zeiss}
B&B in Pittsburgh [Olympus history, good folks]: http://www.bbmicro.com/index.php [NO direct relationship, we have Olympus confocal]


If what you NEED is polarizing optics, then perhaps you can work a trade of what you don't need. I admit the Zeiss is a wonderful system, but it appears to be what you do not need, thus, it has only for which you may need only an accessory.

Khowing that bad advice (as a Biologist, I would NEVER get rid of such a good instrument!!) is almost always free, I humbly submit the above for your consideration.

Cheers from a Leitz Ortholux with Ploem fluorescence user,

Fred Monson
Technical Director

CMIRT, West Chester University
West Chester, PA, 19383
610-738-0437
http://cmirt.wcupa.edu
============================================================

From: frank_karl-at-ardl.com [frank_karl-at-ardl.com]
Sent: Thursday, May 26, 2011 10:28 AM
To: Monson, Frederick

Hello everyone,
I need the collective wisdom of the list server: I have a badly cared for Zeiss Photomicroscope III (the universal stand, I believe), which I recently inherited.

Taking it apart I have discovered it appears to be set up for reflected fluorescence and transmitted phase. (It is missing the large Hg burner used for fluorescence.) It's a very cool scope, once set up for 35mm film, but I need a pol scope for particle identification. I also need a trinocular head.

My question is, is there anyone who refurbishes these scopes and can supply the needed parts to convert the scope to polarized light.

Thanks ................

Frank


Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



________________________________
This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.


==============================Original Headers==============================
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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Thu, 26 May 2011 12:41:53 -0500
Subject: [Microscopy] Immunogold with SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

for me, one reference paper on this topic is here:

Schroeder-Reiter E, Houben A, Wanner G (2003) Chromosoma Research 11: 585-596

FE-SEM of chromosomes, with nanogold ... have a close look.

kind regards,
Reinhard


--
Prof. Dr. Reinhard Rachel
Universitaet Regensburg
Centre for EM / Anatomy
Faculty for Biology&Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29



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From: Nicola.Weston-at-nottingham.ac.uk
Date: Fri, 27 May 2011 03:41:09 -0500
Subject: [Microscopy] Embedding paper

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello all
I have been asked to embed some paper to enable cross section viewing in the sem. I thought I could use epofix resin then microtome to leave a smooth block face. But any tips on embedding the sample to ensure I get a good cross section of the paper. I have some BEEM capsules or a flat mold available.

Many thanks
NikkiThis message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham.

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==============================Original Headers==============================
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From: nizets2-at-yahoo.com
Date: Fri, 27 May 2011 04:07:35 -0500
Subject: [Microscopy] Embedding paper

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Nicola,

This issue has already been dealt with in the past. You may want to search the
archives of the MicroscopyListserver for 2009.
This message has no chance to contain viruses and infect your computer ;-)

Regards,
Stephane



----- Original Message ----
X-from: "Nicola.Weston-at-nottingham.ac.uk" {Nicola.Weston-at-nottingham.ac.uk}
To: nizets2-at-yahoo.com
Sent: Fri, May 27, 2011 10:44:45 AM

Hello all
I have been asked to embed some paper to enable cross section viewing in the
sem. I thought I could use epofix resin then microtome to leave a smooth block
face. But any tips on embedding the sample to ensure I get a good cross section
of the paper. I have some BEEM capsules or a flat mold available.

Many thanks
NikkiThis message and any attachment are intended solely for the addressee and
may contain confidential information. If you have received this message in
error, please send it back to me, and immediately delete it.  Please do not use,
copy or disclose the information contained in this message or in any
attachment.  Any views or opinions expressed by the author of this email do not
necessarily reflect the views of the University of Nottingham.

This message has been checked for viruses but the contents of an attachment
may still contain software viruses which could damage your computer system:
you are advised to perform your own checks. Email communications with the
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From: goodlg-at-matthey.com
Date: Fri, 27 May 2011 05:19:11 -0500
Subject: [Microscopy] Vacancy: TEM/SEM (UK)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

VACANCY: JOHNSON MATTHEY
Technology Centre - Sonning Common (approx. 35 miles West of Central
London)

A research scientist position specialising in Electron Microscopy has
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See www.matthey.com/cgi-bin/JobView.pl?id=677&location=9 for more
detailed information.

Closing date for applications: 24th June 2011

For further information contact:

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From: vray-at-partbeamsystech.com
Date: Fri, 27 May 2011 07:25:52 -0500
Subject: [Microscopy] Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi John,

The determination of $50K - $60K as being a reasonable price for
sustainable service of $600K instrument is based on.... 10% rule of
thumb, but also 17+ years servicing various industrial and analytical
SEMs and FIBs, of which 7 years as a third-party service provider. I can
not speak about TEMs as I do not know that segment, but no matter how I
do the numbers for FIBs or SEMs, calculation for the cost of sustainable
(meaning: without pre-programmed End Of Life for the instrument) service
comes close to 10% +/- .

I agree that a very large customer base, in close proximity from each
other and with the same type of instruments, may allow providing
sustainable service with price tag lower then the 10% "rule of thumb" -
maybe. Same as small customer base with diverse instruments would push
for higher price of the service.

It may seem that for very expensive instruments 10% is an overkill,
until you come across just one case of replacing high-voltage parts or
major column components.

I also agree that mentioned earlier annual service contract, priced at
15% of the tool cost seem to be excessive. Unless, of cause, there was
something else going on behind the scenes that we do not know about. For
example, it could have happened that eager-to-make-a-deal sales people
agreed to give unconditional-no-matter-what-all-inclusive warranty to
win the sale, but then tool was abused during first year and most of
repairs were due to user damage. It is reasonable to expect that in such
case service organization will try to recover the losses. Who knows?

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 5/26/2011 9:42 AM, john.robson-at-boehringer-ingelheim.com wrote:
} Hi Valery,
}
} Question: Based upon what information, other than the 10% rule, have you
} arrived at the conclusion that $50k - %60 is a reasonable amount? I never
} mentioned which SEM I was running, the service history of the SEM / facility,
} or what materials were being examined? An across the board determination
} fails to consider several risks associated with each instrument.
}
} I totally agree that a service organization needs to turn a profit and
} investors should have every expectation that they have made a wise
} investment. I also agree that there is a degree of uncertainty with regards
} to the liability associated with equipment failure. Costs associated with
} both technician time (and travel/housing/food costs) and replacement parts is
} a gamble for the service provider, although a larger customer base mitigates
} the risk. In fact a case could easily be made that lower cost service
} contracts with a higher customer base could lead to greater profits.
} However, my comments with regards to a sweeping across the board 10% rule
} actually goes to the financial risks associated with each type of instrument.
} Customers with high cost instruments, with only a slightly higher cost of
} maintenance, shouldn't bare the brunt of the service organizations profits.
} The price of a service contract should be determined by the actual costs to
} maintain the tool with a reasonable amount of profit tacked on to the bill.
} This does vary by instrument type and design but doesn't track very well with
} purchase price of the equipment. Suppose you're in a multi-user facility
} with a track record of heavy handed use leading to frequent repairs? Perhaps
} you work with materials that require frequent visits to clean up a messy
} column? Either situation could, and does, result in multiple years where
} service costs exceed 10%? Does the 10% rule still apply? I suppose if
} you're running the lab it sounds about right! :-)
}
} However, going back to the original posting in this thread, it sounds like
} Rosemary White's instrument isn't very reliable and her facility is being
} extorted by the manufacturer. If I were in the market for a new ESEM I would
} contact her off line, you might want to get the name of that company! But it
} does go straight to the heart of my argument regarding "10%". Her service
} provider has crunched the numbers and for her particular failure prone ESEM
} they need to charge 15% to keep their organization going!
}
} My experience has been that service contract costs, for the high ticket
} instruments (that work!), don't track with the 10% rule. And my service
} company has still managed to turn a profit from my site every year for 20
} years.
}
} John A. Robson
}
} -----Original Message-----
} From: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} Sent: Wednesday, May 25, 2011 5:37 PM
} To: Robson,John (AN) BIP-US-R
} Cc: microscopy-at-microscopy.com
} Subject: Re: [Microscopy] Re: Microscope service strategies - numbers
}
} Hi John,
}
} The 10% rule applies to all-inclusive support by external organization
} and must sustain existence of such service organization, cover all
} costs, risks, and provide reasonable profit. The amount of $50K - $60K
} per year are about right, it will be hard to sustain business of the
} support organization otherwise.
}
} Of cause, you can do self-service and keep tools running at much lower
} costs: for a while, on some instruments, and with higher risks. That is
} a business decision made by many and it may be justified in your
} particular situation. Just understand clearly what are the risks that
} you are taking and accept the fact that whatever happens you are (or
} your institution) will be on your (its) own.
}
} Cheers :)
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
}
} On 5/25/2011 10:49 AM, john.robson-at-boehringer-ingelheim.com wrote:
} } The 10% rule would value a service contract at $50K- $60K to maintain an
} SEM
} } with a purchase price of $500K - $600K. That sounds somewhat unjustifiably
} } high assuming your proximity to the service technician doesn't entail
} } extensive travel time/costs. In my opinion the 10% formula doesn't track
} } very well as the purchase price of the instrument increases from entry
} level
} } to "top of the line". I have maintained 2 somewhat costly FESEMs over the
} } past 20+ years and in my experience their service history and cost of
} } ownership don't support the 10% rule. The cost to maintain a high end
} system
} } is only marginally higher than a less costly entry level model yet the 10%
} } rule could easily double the service contract price.
} }
} }
} } John A. Robson
} }
} } -----Original Message-----
} } From: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} } Sent: Tuesday, May 24, 2011 11:17 PM
} } To: Robson,John (AN) BIP-US-R
} } Subject: [Microscopy] Re: Microscope service strategies - numbers
} }
} }
} }
} }
} }
} ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} }
} ----------------------------------------------------------------------------
} }
} } Catching up with e-mail....
} }
} } I fully agree with Ken - an all-inclusive (parts and labor) service
} } contract, priced around 10% of the new instrument cost, is about right
} } to keep most FIBs and SEMs running at OEM-spec level virtually
} } indefinitely, but surely for 10+ years after the formally-declared EOL.
} } Cost may get higher by 2% - 3% if the instrument is *very* old (20+
} } years) or if the customer with a single tool is located very remotely
} } from the service organization. It is also reasonable for customer to
} } expect that if FIB/SEM tool is covered by all-inclusive service
} } contract, then its consumable parts should be provided at significant
} } discount comparatively to the open-market prices.
} }
} } The obvious dilemma "do I keep spending money on servicing this tool, or
} } do I run it to ground and get a new one in a couple of years" is a
} } business decision which everyone makes based on his/her/institution
} } financial situation.
} }
} } Cheers :)
} }
} } Valery Ray
} } =================================
} } PBS&T, MEO Engineering Co., Inc.
} } 290 Broadway, Suite 298
} } Methuen, MA 01844 USA
} } Phone: +1-978-296-5063
} } US Mobile: +1-978-305-0479
} } Skype: pbstmeo
} } E-mail: vray-at-partbeamsystech.com
} } Web: www.partbeamsystech.com
} }
} } On 5/17/2011 9:00 AM, kenconverse-at-qualityimages.biz wrote:
} } }
} }
} ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } } To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} } } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } }
} }
} ----------------------------------------------------------------------------
} } }
} } } Hi Rosemary,
} } } Your confocal sounds about right, although with only about a 25% increase
} } } over 10 years, I think you can count your blessings.
} } }
} } } As for your ESEM, I should think the terms should look very much like your
} } } confocal contract. Are they claiming that all the break-downs were caused
} } } by mis-use and abuse? If that were the case, they shouldn't have covered
} } } the repairs even under warranty. On the other hand, if the failures were
} } } due to their poor design and construction, they certainly have a lot of
} } } nerve implying that your contract is being increased because of that. I'm
} } } also very surprised that parts are not covered. To me, that is not a
} } } service contract, particularly for a new instrument. It can be
} } } understandable for very old instruments, but should be reflected in the
} } } pricing.
} } }
} } } Whoever the vendor is, I would certainly have a hard time recommending
} them
} } } to anyone, given the situation you describe.
} } }
} } } Ken Converse
} } } owner
} } }
} } } QUALITY IMAGES
} } } Servicing Scanning Electron Microscopes
} } } Since 1981
} } } 474 So. Bridgton Rd.
} } } Bridgton, ME 04009
} } } 207-647-4348
} } } kenconverse-at-qualityimages.biz
} } } qualityimages.biz
} } }
} } }
} } } -----Original Message-----
} } } X-from: rosemary.white-at-csiro.au [mailto:rosemary.white-at-csiro.au]
} } } Sent: Monday, May 16, 2011 10:01 PM
} } } To: kenconverse-at-qualityimages.biz
} } } Subject: [Microscopy] Re: Microscope service strategies - numbers
} } }
} } }
} } }
} } }
} } }
} }
} ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } } To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} } } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } }
} }
} ----------------------------------------------------------------------------
} } }
} } } Dear all,
} } }
} } } Just to get some numbers here, how much is reasonable for a service
} } } contract? 10% of original cost of the instrument? 15% of cost?
} } }
} } } We have a service contract on one instrument (confocal) that was (10 years
} } } ago) about 8% of original cost, now is about 10%. This is essentially a
} } } full extended warranty, and includes an annual service visit, unlimited
} } } emergency callouts and all replacement parts, even lasers are included.
} } } It's been great. I don't think they have this type of contract for new
} } } instruments, though(c)
} } }
} } } However, for a new instrument (ESEM) from a different supplier, we were
} } } quoted about 15% of the original cost for a contract with 2 annual
} } } maintenance visits plus unlimited emergency callouts, but no coverage of
} } } replacement parts. For 2 maintenance visits and 2 emergency callouts but
} } } no parts the cost went down to about 8% of initial cost. The reason given
} } } for the cost was that we had many breakdowns in the 12 month warranty
} } } period (2 mother boards, 3 different Peltier stages, 2 BSE detectors,
} } } computer fan blew up, etc, etc), and they had to factor this in.
} } } Considering the presumed reliability of SEMs compared to confocals (in my
} } } experience before this new instrument), and that no parts were covered, it
} } } seemed quite expensive.
} } }
} } } Is the latter about what you'd expect to pay for a service contract?
} } }
} } } Thanks,
} } } Rosemary White
} } }
} } } Dr Rosemary White
} } } CSIRO Plant Industry
} } } GPO Box 1600
} } } Canberra, ACT 2601
} } } Australia
} } }
} } } T 61 2 6246 5475
} } } F 61 2 6246 5334
} } } E rosemary.white-at-csiro.au
} } }
} } }
} } }
} } }
} } }
} } }
} } } ==============================Original
} } Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 27 May 2011 08:46:27 -0500
Subject: [Microscopy] viaWWW:dispersant for Kaolin clays

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Email: Croix Snapp/AMPAC/ECCI-at-ECCI Name: Croix Snapp

Organization: Imerys

Title-Subject: [Filtered] Kaolin Dispersant
Message: I am an intern who is looking for an ideal dispersant for
Kaolin clays, in order to observe individual Kaolin plates under a Jeol
JSM-6700F Field Emission Scanning Electron Microscope. Would anyone on
the listserver have a suggestion? At the moment I need as many ideas as
possible, hopefully from a list of ionic dispersants.

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From: kenconverse-at-qualityimages.biz
Date: Fri, 27 May 2011 09:11:54 -0500
Subject: [Microscopy] viaWWW:dispersant for Kaolin clays

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Croix,
This was many years ago, but at the US Geological survey where I worked for
a while, various cores were dispersed with Calgon (water softener) and an
ultra-sonic probe (marketed as a cell disrupter). I don't know if there are
any down sides to using it with Kaolin, but it might be worth a try.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
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[mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Friday, May 27, 2011 9:49 AM
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Organization: Imerys

Title-Subject: [Filtered] Kaolin Dispersant
Message: I am an intern who is looking for an ideal dispersant for
Kaolin clays, in order to observe individual Kaolin plates under a Jeol
JSM-6700F Field Emission Scanning Electron Microscope. Would anyone on
the listserver have a suggestion? At the moment I need as many ideas as
possible, hopefully from a list of ionic dispersants.

Login Host: 63.122.213.126
---------------------------------------------------------------------------



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From: ph2-at-sprynet.com
Date: Fri, 27 May 2011 09:41:05 -0500
Subject: [Microscopy] viaWWW:dispersant for Kaolin clays

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Valery,

Again it appears that I haven't clearly conveyed my point. I don't disagree
that 10% across the board satisfies the service companies need, and
expectation, of turning a profit. My point is that an across the board 10%
charge totally disregards the individual risks (instrument type, user
competency, sample type, etc...) associated with each contract. A somewhat
analogous example would be a homeowner near a nuclear reactor in Sendai Japan
paying for insurance at the same rate as someone living near Peabody
Massachusetts. Aside from the universal risks of fire (normal wear and tear
on an instrument), accident (expensive but infrequent failure e.g. power
supply / lens), etc... clearly the risks associated with living in Sendai...
potential earthquakes (instrument type-with features known to have short
lifespan), cyclone(sample type-known to require frequent cleaning), tsunami
(usage - high usage multi-user facility), radioactive contamination
(technical competency - inexperienced / poorly supervised users) warrants
some add-on to the premium?

Another analogy would be 2 drivers with the same exact make and model car.
One lives in the Bronx and works/drives to Manhattan has had 3 speeding
tickets, 2 accidents, and a DWI all in the past year. The other lives in
Milford Pennsylvania, works 1 mile from home and has been driving for 30
years without incident. Would they pay the same car insurance? I think not,
so why would an SEM be treated any differently?

Certainly economy of scale is an issue too, manufacturers service
organization vs. 3rd party providers? We also haven't mentioned response
time. Immediate response is a factor one should expect to increase the cost
of your premium?

FYI Truth be told Valery, immediately after sending my last reply I regretted
comments I made regarding the ESEM manufacture. We only have one side of the
story. Although I find it hard to believe 2 mother boards and a computer fan
failure, along with multiple other failures, were caused by the operator my
comments were based on insufficient "hearsay" information (No offense
intended Rosemary).

Regards,
John A. Robson

-----Original Message-----
X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
Sent: Friday, May 27, 2011 8:26 AM
To: Robson,John (AN) BIP-US-R
Cc: microscopy-at-microscopy.com

1. I would suggest reviewing the following papers to get a feel for
some of the issues with clay prep:


Bohor, Scanning Electron Microscopy of Clays and Clay Minerals, Clay Clay
Min, 19, 1, 49-54, 1971

Sing, An Electron Optical Investigation of the Alteration of Kaolinite to
Halloysite, Clays Clay Min, 40, 2, 212-229, 1992

Zbik, Nanomorphology of Kaolinites, Comparative SEM and AFM Studies, Clays
Clay Min, 46, 2, 153-160, 1998

Keller, Scanning Electron Micrographs of Kaolins Collected from Diverse
Environments of Origin-I, Clays Clay Min, 24, 3, 107-113, 1976

Escudey, Apparent Dissolution During Ultrasonic Dispersion of Allophanic
Soils and Soil Fractions, Clays Clay Min, 37, 5, 493-496, 1989

Jernigan, Critical Point Drying of Electron Microscope Samples of Clay
Minerals, Clay Clay Min, 23, 2, 161-162, 1975


2. Also, I should mention that Debbie Sherman at Purdue has fair amount
of work with clays and could probably give more ideas but since there is no
direct email to reply on this post, I'll let her respond if she chooses.


Tony

......................................................................
Andrew Anthony "Tony" Havics, CHMM, CIH, PE
pH2, LLC
5250 E US 36, Suite 830 Avon
IN 46123
www.ph2llc.com
(317) 718-7020 off
(317) 718-7038 fax
(317) 409-3238 cell

90% of Risk Management is knowing where to place the decimal point...any
consultant can give you the other 10%(SM)

This message is from pH2. This message and any attachments may contain
legally privileged or confidential information, and are intended only for
the individual or entity identified above as the addressee. If you are not
the addressee, or if this message has been addressed to you in error, you
are not authorized to read, copy, or distribute this message and any
attachments, and we ask that you please delete this message and attachments
(including all copies) and notify the sender by return e-mail or by phone at
317-718-7020. Delivery of this message and any attachments to any person
other than the intended recipient(s) is not intended in any way to waive
confidentiality or a privilege. All personal messages express views only of
the sender, which are not to be attributed to pH2 and may not be copied or
distributed without this statement.


Tony


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Email: Croix Snapp/AMPAC/ECCI-at-ECCI Name: Croix Snapp

Organization: Imerys

Title-Subject: [Filtered] Kaolin Dispersant
Message: I am an intern who is looking for an ideal dispersant for
Kaolin clays, in order to observe individual Kaolin plates under a Jeol
JSM-6700F Field Emission Scanning Electron Microscope. Would anyone on
the listserver have a suggestion? At the moment I need as many ideas as
possible, hopefully from a list of ionic dispersants.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 27 May 2011 15:58:12 -0500
Subject: [Microscopy] viaWWW:Carbon evaporator

Contents Retrieved from Microscopy Listserver Archives
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Email: Angel.Paredes-at-fda.hhs.gov Name: Angel Paredes

Organization: NCTR

Title-Subject: [Filtered] Carbon evaporator

Message: Hi,

I am in need of a used carbon evaporator. Does anyone know we could get
relatively quickly while we wait for the new one we ordered to arrive?

Sincerely,
Angel Paredes
NCTR
Jefferson, AR 72079

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From: vray-at-partbeamsystech.com
Date: Fri, 27 May 2011 16:58:59 -0500
Subject: [Microscopy] Re: viaWWW:Carbon evaporator

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Search for "carbon coater" or call:

http://www.capovani.com
http://www.emcgrath.com/
http://www.bidservice.com/
N&R SCIENTIFIC (201) 592-1864
http://www.ebay.com
http://www.labx.com/
http://www.equipmatching.com/

Good luck :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

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}
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From: vray-at-partbeamsystech.com
Date: Fri, 27 May 2011 17:31:58 -0500
Subject: [Microscopy] Re: Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi John,

Sure, of cause, specific level of coverage provided by the service
contract would affect the price!

It is exactly like insurance - reduced coverage lets you reduce premium
with higher risk, and higher level of coverage increases premium but can
virtually eliminate risk. One can also go without insurance and bear all
the risks, or anything in between - this is a business decision and the
right answer is different for different users.

And yes, "15 minute call" (to alternative service provider) can save you
a little bit, but be beware of "significant" savings - usually you get
(quality and coverage) that you are paying for. IMHO 10% is a good
reference point for full-coverage service contract on particle beam
instrument. Of cause - depending on particularities, actual price may
vary slightly, but in my (still limited) experience not by much...

Have a great weekend :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 5/27/2011 10:12 AM, john.robson-at-boehringer-ingelheim.com wrote:
} ----------------------------------------------------------------------------
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} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
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} ----------------------------------------------------------------------------
}
} Hi Valery,
}
} Again it appears that I haven't clearly conveyed my point. I don't disagree
} that 10% across the board satisfies the service companies need, and
} expectation, of turning a profit. My point is that an across the board 10%
} charge totally disregards the individual risks (instrument type, user
} competency, sample type, etc...) associated with each contract. A somewhat
} analogous example would be a homeowner near a nuclear reactor in Sendai Japan
} paying for insurance at the same rate as someone living near Peabody
} Massachusetts. Aside from the universal risks of fire (normal wear and tear
} on an instrument), accident (expensive but infrequent failure e.g. power
} supply / lens), etc... clearly the risks associated with living in Sendai...
} potential earthquakes (instrument type-with features known to have short
} lifespan), cyclone(sample type-known to require frequent cleaning), tsunami
} (usage - high usage multi-user facility), radioactive contamination
} (technical competency - inexperienced / poorly supervised users) warrants
} some add-on to the premium?
}
} Another analogy would be 2 drivers with the same exact make and model car.
} One lives in the Bronx and works/drives to Manhattan has had 3 speeding
} tickets, 2 accidents, and a DWI all in the past year. The other lives in
} Milford Pennsylvania, works 1 mile from home and has been driving for 30
} years without incident. Would they pay the same car insurance? I think not,
} so why would an SEM be treated any differently?
}
} Certainly economy of scale is an issue too, manufacturers service
} organization vs. 3rd party providers? We also haven't mentioned response
} time. Immediate response is a factor one should expect to increase the cost
} of your premium?
}
} FYI Truth be told Valery, immediately after sending my last reply I regretted
} comments I made regarding the ESEM manufacture. We only have one side of the
} story. Although I find it hard to believe 2 mother boards and a computer fan
} failure, along with multiple other failures, were caused by the operator my
} comments were based on insufficient "hearsay" information (No offense
} intended Rosemary).
}
} Regards,
} John A. Robson
}
} -----Original Message-----
} X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} Sent: Friday, May 27, 2011 8:26 AM
} To: Robson,John (AN) BIP-US-R
} Cc: microscopy-at-microscopy.com
} Subject: Re: [Microscopy] Re: Microscope service strategies - numbers
}
} Hi John,
}
} The determination of $50K - $60K as being a reasonable price for
} sustainable service of $600K instrument is based on.... 10% rule of
} thumb, but also 17+ years servicing various industrial and analytical
} SEMs and FIBs, of which 7 years as a third-party service provider. I can
} not speak about TEMs as I do not know that segment, but no matter how I
} do the numbers for FIBs or SEMs, calculation for the cost of sustainable
} (meaning: without pre-programmed End Of Life for the instrument) service
} comes close to 10% +/- .
}
} I agree that a very large customer base, in close proximity from each
} other and with the same type of instruments, may allow providing
} sustainable service with price tag lower then the 10% "rule of thumb" -
} maybe. Same as small customer base with diverse instruments would push
} for higher price of the service.
}
} It may seem that for very expensive instruments 10% is an overkill,
} until you come across just one case of replacing high-voltage parts or
} major column components.
}
} I also agree that mentioned earlier annual service contract, priced at
} 15% of the tool cost seem to be excessive. Unless, of cause, there was
} something else going on behind the scenes that we do not know about. For
} example, it could have happened that eager-to-make-a-deal sales people
} agreed to give unconditional-no-matter-what-all-inclusive warranty to
} win the sale, but then tool was abused during first year and most of
} repairs were due to user damage. It is reasonable to expect that in such
} case service organization will try to recover the losses. Who knows?
}
} Cheers :)
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
}
} On 5/26/2011 9:42 AM, john.robson-at-boehringer-ingelheim.com wrote:
} } Hi Valery,
} }
} } Question: Based upon what information, other than the 10% rule, have you
} } arrived at the conclusion that $50k - %60 is a reasonable amount? I never
} } mentioned which SEM I was running, the service history of the SEM /
} facility,
} } or what materials were being examined? An across the board determination
} } fails to consider several risks associated with each instrument.
} }
} } I totally agree that a service organization needs to turn a profit and
} } investors should have every expectation that they have made a wise
} } investment. I also agree that there is a degree of uncertainty with
} regards
} } to the liability associated with equipment failure. Costs associated with
} } both technician time (and travel/housing/food costs) and replacement parts
} is
} } a gamble for the service provider, although a larger customer base
} mitigates
} } the risk. In fact a case could easily be made that lower cost service
} } contracts with a higher customer base could lead to greater profits.
} } However, my comments with regards to a sweeping across the board 10% rule
} } actually goes to the financial risks associated with each type of
} instrument.
} } Customers with high cost instruments, with only a slightly higher cost of
} } maintenance, shouldn't bare the brunt of the service organizations profits.
} } The price of a service contract should be determined by the actual costs to
} } maintain the tool with a reasonable amount of profit tacked on to the bill.
} } This does vary by instrument type and design but doesn't track very well
} with
} } purchase price of the equipment. Suppose you're in a multi-user facility
} } with a track record of heavy handed use leading to frequent repairs?
} Perhaps
} } you work with materials that require frequent visits to clean up a messy
} } column? Either situation could, and does, result in multiple years where
} } service costs exceed 10%? Does the 10% rule still apply? I suppose if
} } you're running the lab it sounds about right! :-)
} }
} } However, going back to the original posting in this thread, it sounds like
} } Rosemary White's instrument isn't very reliable and her facility is being
} } extorted by the manufacturer. If I were in the market for a new ESEM I
} would
} } contact her off line, you might want to get the name of that company! But
} it
} } does go straight to the heart of my argument regarding "10%". Her service
} } provider has crunched the numbers and for her particular failure prone ESEM
} } they need to charge 15% to keep their organization going!
} }
} } My experience has been that service contract costs, for the high ticket
} } instruments (that work!), don't track with the 10% rule. And my service
} } company has still managed to turn a profit from my site every year for 20
} } years.
} }
} } John A. Robson
} }
} } -----Original Message-----
} } From: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} } Sent: Wednesday, May 25, 2011 5:37 PM
} } To: Robson,John (AN) BIP-US-R
} } Cc: microscopy-at-microscopy.com
} } Subject: Re: [Microscopy] Re: Microscope service strategies - numbers
} }
} } Hi John,
} }
} } The 10% rule applies to all-inclusive support by external organization
} } and must sustain existence of such service organization, cover all
} } costs, risks, and provide reasonable profit. The amount of $50K - $60K
} } per year are about right, it will be hard to sustain business of the
} } support organization otherwise.
} }
} } Of cause, you can do self-service and keep tools running at much lower
} } costs: for a while, on some instruments, and with higher risks. That is
} } a business decision made by many and it may be justified in your
} } particular situation. Just understand clearly what are the risks that
} } you are taking and accept the fact that whatever happens you are (or
} } your institution) will be on your (its) own.
} }
} } Cheers :)
} }
} } Valery Ray
} } =================================
} } PBS&T, MEO Engineering Co., Inc.
} } 290 Broadway, Suite 298
} } Methuen, MA 01844 USA
} } Phone: +1-978-296-5063
} } US Mobile: +1-978-305-0479
} } Skype: pbstmeo
} } E-mail: vray-at-partbeamsystech.com
} } Web: www.partbeamsystech.com
} }
} } On 5/25/2011 10:49 AM, john.robson-at-boehringer-ingelheim.com wrote:
} } } The 10% rule would value a service contract at $50K- $60K to maintain an
} } SEM
} } } with a purchase price of $500K - $600K. That sounds somewhat
} unjustifiably
} } } high assuming your proximity to the service technician doesn't entail
} } } extensive travel time/costs. In my opinion the 10% formula doesn't track
} } } very well as the purchase price of the instrument increases from entry
} } level
} } } to "top of the line". I have maintained 2 somewhat costly FESEMs over the
} } } past 20+ years and in my experience their service history and cost of
} } } ownership don't support the 10% rule. The cost to maintain a high end
} } system
} } } is only marginally higher than a less costly entry level model yet the 10%
} } } rule could easily double the service contract price.
} } }
} } }
} } } John A. Robson
} } }
} } } -----Original Message-----
} } } From: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} } } Sent: Tuesday, May 24, 2011 11:17 PM
} } } To: Robson,John (AN) BIP-US-R
} } } Subject: [Microscopy] Re: Microscope service strategies - numbers
} } }
} } }
} } }
} } }
} } }
} }
} ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } } To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} } } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } }
} }
} ----------------------------------------------------------------------------
} } }
} } } Catching up with e-mail....
} } }
} } } I fully agree with Ken - an all-inclusive (parts and labor) service
} } } contract, priced around 10% of the new instrument cost, is about right
} } } to keep most FIBs and SEMs running at OEM-spec level virtually
} } } indefinitely, but surely for 10+ years after the formally-declared EOL.
} } } Cost may get higher by 2% - 3% if the instrument is *very* old (20+
} } } years) or if the customer with a single tool is located very remotely
} } } from the service organization. It is also reasonable for customer to
} } } expect that if FIB/SEM tool is covered by all-inclusive service
} } } contract, then its consumable parts should be provided at significant
} } } discount comparatively to the open-market prices.
} } }
} } } The obvious dilemma "do I keep spending money on servicing this tool, or
} } } do I run it to ground and get a new one in a couple of years" is a
} } } business decision which everyone makes based on his/her/institution
} } } financial situation.
} } }
} } } Cheers :)
} } }
} } } Valery Ray
} } } =================================
} } } PBS&T, MEO Engineering Co., Inc.
} } } 290 Broadway, Suite 298
} } } Methuen, MA 01844 USA
} } } Phone: +1-978-296-5063
} } } US Mobile: +1-978-305-0479
} } } Skype: pbstmeo
} } } E-mail: vray-at-partbeamsystech.com
} } } Web: www.partbeamsystech.com
} } }
} } } On 5/17/2011 9:00 AM, kenconverse-at-qualityimages.biz wrote:
} } } }
} } }
} }
} ----------------------------------------------------------------------------
} } } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
} } } } To Subscribe/Unsubscribe --
} } http://www.microscopy.com/MicroscopyListserver
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} } } }
} } }
} }
} ----------------------------------------------------------------------------
} } } }
} } } } Hi Rosemary,
} } } } Your confocal sounds about right, although with only about a 25% increase
} } } } over 10 years, I think you can count your blessings.
} } } }
} } } } As for your ESEM, I should think the terms should look very much like
} your
} } } } confocal contract. Are they claiming that all the break-downs were
} caused
} } } } by mis-use and abuse? If that were the case, they shouldn't have covered
} } } } the repairs even under warranty. On the other hand, if the failures were
} } } } due to their poor design and construction, they certainly have a lot of
} } } } nerve implying that your contract is being increased because of that.
} I'm
} } } } also very surprised that parts are not covered. To me, that is not a
} } } } service contract, particularly for a new instrument. It can be
} } } } understandable for very old instruments, but should be reflected in the
} } } } pricing.
} } } }
} } } } Whoever the vendor is, I would certainly have a hard time recommending
} } them
} } } } to anyone, given the situation you describe.
} } } }
} } } } Ken Converse
} } } } owner
} } } }
} } } } QUALITY IMAGES
} } } } Servicing Scanning Electron Microscopes
} } } } Since 1981
} } } } 474 So. Bridgton Rd.
} } } } Bridgton, ME 04009
} } } } 207-647-4348
} } } } kenconverse-at-qualityimages.biz
} } } } qualityimages.biz
} } } }
} } } }
} } } } -----Original Message-----
} } } } X-from: rosemary.white-at-csiro.au [mailto:rosemary.white-at-csiro.au]
} } } } Sent: Monday, May 16, 2011 10:01 PM
} } } } To: kenconverse-at-qualityimages.biz
} } } } Subject: [Microscopy] Re: Microscope service strategies - numbers
} } } }
} } } }
} } } }
} } } }
} } } }
} } }
} }
} ----------------------------------------------------------------------------
} } } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America
} } } } To Subscribe/Unsubscribe --
} } http://www.microscopy.com/MicroscopyListserver
} } } } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } } }
} } }
} }
} ----------------------------------------------------------------------------
} } } }
} } } } Dear all,
} } } }
} } } } Just to get some numbers here, how much is reasonable for a service
} } } } contract? 10% of original cost of the instrument? 15% of cost?
} } } }
} } } } We have a service contract on one instrument (confocal) that was (10
} years
} } } } ago) about 8% of original cost, now is about 10%. This is essentially a
} } } } full extended warranty, and includes an annual service visit, unlimited
} } } } emergency callouts and all replacement parts, even lasers are included.
} } } } It's been great. I don't think they have this type of contract for new
} } } } instruments, though(c)
} } } }
} } } } However, for a new instrument (ESEM) from a different supplier, we were
} } } } quoted about 15% of the original cost for a contract with 2 annual
} } } } maintenance visits plus unlimited emergency callouts, but no coverage of
} } } } replacement parts. For 2 maintenance visits and 2 emergency callouts but
} } } } no parts the cost went down to about 8% of initial cost. The reason
} given
} } } } for the cost was that we had many breakdowns in the 12 month warranty
} } } } period (2 mother boards, 3 different Peltier stages, 2 BSE detectors,
} } } } computer fan blew up, etc, etc), and they had to factor this in.
} } } } Considering the presumed reliability of SEMs compared to confocals (in my
} } } } experience before this new instrument), and that no parts were covered,
} it
} } } } seemed quite expensive.
} } } }
} } } } Is the latter about what you'd expect to pay for a service contract?
} } } }
} } } } Thanks,
} } } } Rosemary White
} } } }
} } } } Dr Rosemary White
} } } } CSIRO Plant Industry
} } } } GPO Box 1600
} } } } Canberra, ACT 2601
} } } } Australia
} } } }
} } } } T 61 2 6246 5475
} } } } F 61 2 6246 5334
} } } } E rosemary.white-at-csiro.au
} } } }
} } } }
} } } }
} } } }
} } } }
} } } }
} } } } ==============================Original
} } } Headers==============================
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} } } } 2011
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From: rosemary.white-at-csiro.au
Date: Fri, 27 May 2011 19:03:14 -0500
Subject: [Microscopy] Re: Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I can give you the details and you can judge.

After installation, we noticed erratic EPSE signals, the EPSE detector was
replaced 6 months later, but the cool stage still interfered with the
detector. This went on for a further 6 months with two replacements until
it was finally fixed, sort of. Even though it's marketed as a full ESEM
able to be used with water vapour, it doesn't like this with the cool
stage below about 3 degrees, which makes it much less useful than we
anticipated. The EPSE detector finally worked correctly 14 months after
installation.

The two motherboards failed two months after installation by the
engineers, and it took two months before they were replaced, which seemed
rather a long time.

The computer fan blew up when the engineer came to do a routine service -
he was at the instrument, not one of us. Fortunately, we could just go to
a local shop and get a new fan.

Weirdly, one quadrant of the BSE detector also failed during a service
visit. It took 4 months to replace the BSE detector. 5 months after
this, the BSE diode and pre-amp failed, and it took 6 weeks for the parts
to arrive. During installation of the replacement BSE diode and pre-amp
by the service engineer, the SE detector died. We had to pay the $5,000
to get it replaced.

The final straw, which I didn't mention earlier, was that we were
guaranteed, in writing, that our cryostage would fit onto the new SEM, and
it doesn't. The company hasn't even tried to help us with this.

When I asked about a maintenance contract, the branch manager specifically
pointed out that because we'd been so expensive to them in the warranty
period, our contract was more expensive and would not cover parts. She
also said that the installation and warranty agreements had been heavily
discounted to get sales and although our instrument was more expensive
than their discounted budget, it did fall under her quote for standard
install and warranty, so it's on their heads, in my mind, that it cost
more than they bargained for.

Unlimited callouts plus two maintenance visits would be just under 15% of
the initial cost, whereas two maintenance visits plus two callouts per
year would be about 7% of initial cost, and two maintenance visits with no
callouts would be 3% of the initial cost. None of these cover parts.

Anyway, I'll never purchase anything from this lot again. I get annoyed
with the "blame the customer" attitude. I've been in this game 25 years,
and I've never had this experience before. As I mentioned, we have a
confocal - in my books a much more temperamental and failure-prone beast
than an SEM - and we've had a full extended warranty on it for 10 years
and the company has never complained that we're too expensive. We also
have a 30-year old SEM which we still use although its mechanical parts
are wearing out, but it just keeps on chugging on, we've had very few
problems with it.

But thanks for all the comments and numbers, it's been very useful.

Rosemary

Dr Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
E rosemary.white-at-csiro.au


On 28/05/11 12:18 AM, "john.robson-at-boehringer-ingelheim.com"
{john.robson-at-boehringer-ingelheim.com} wrote:

}
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18, 31 -- Subject: Re: [Microscopy] Microscope service strategies - numbers
18, 31 -- From: Rosemary White {rosemary.white-at-csiro.au}
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From: vray-at-partbeamsystech.com
Date: Sat, 28 May 2011 10:42:03 -0500
Subject: [Microscopy] Microscope service strategies - numbers

Contents Retrieved from Microscopy Listserver Archives
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Hi Rosemary,

On the business side:

1. Based on your recollection of the comments from branch manager, what
happened is very close to what I've guessed: eager-to-make-a-deal sales
organization of the OEM discounted installation and warranty to the
point that it became impossible for the service organization of the same
company to profitably carry these activities. Apparently OEM does not
have internal mechanism for absorbing such losses and "bailing out"
local branch when and if this happens. So local branch manager tried to
recover losses by passing exuberant service fees to the customer (since
now you are stuck with a brand-new SEM which most of alternative support
vendors would not touch). If this happened by accident then you should
receive due apologies and some kind of compensation. Otherwise would
mean that this was a practical execution of that OEM's business strategy...

Did you try to ask your manager about possibility of writing a letter to
the CEO of that OEM company? Upward flow of negative information in
large organizations is very restricted, so chances are that on the level
of management where service and sales organizations of that OEM converge
your story is unheard of, and people with sufficient authority to make
things right are completely unaware of it! Within the OEM organization,
local branch manager and sales account manager that you customary deal
with, have loads of fiscal responsibilities but zero authority for
resolving this kind of situations...

2. If you ever purchased a used car, you should know that salesmen would
give you written guarantees for virtually anything, as long as they
think that you are not likely to sue them over it and confident that
your distant uncle Corleone will not ask cousin Luigi to enforce these
promises. Some of SEM sales people do come from that used-car background
and consider such tactics a fair game. When you get written promises,
you as user should tie a *significant* portion of payment for the tool
to that magic moment when promises will materialize. Or make sure that
promises are on the purchase and sale agreement, do not sign for
installation and do not pay for the tool until your cryo stage fits. If
you already paid for the tool, then there are no meaningful money tied
to the promise to fit your cryo stage. Without *significant* money tied
to the promise, chances are that nobody will do anything about it. Your
only possible recourse now would be to convince management of your
institution to take a legal action, but over such a small (in respect of
money involved) matter it probably would not make sense.

On the service side:

You had typical service-call type of support, instead of warranty
coverage. Length of the lead times for parts suggests that you were sold
a tool for which OEM service organization does not have parts in stock,
or (even worse) have no ability to procure and deliver the parts in a
timely manner. If so - what will they do in 2 years from now, when these
motherboards will be out of production???

On the technical side:

One can try to argue that failure of detectors could have somehow been
caused by user's mode of operation, but if they failed while service
engineer was working on the tool then even this argument becomes too
weak. Everything else should be pure warranty repairs... Unless of
cause, there were traces of Pepsi-Cola spills on all the failed
motherboards and inside of BSE preamplifier, which I doubt.

On the service cost side:

Without knowing specific details of the coverage contract, proximity of
other customers, etc...: 3% for two maintenance visits, without parts
and without service calls may be reasonable, 7% for two maintenance
visits and two service calls starts to get high, but may still be OK if
you are very remote and/or if response time is relatively short, and/or
if you got unlimited phone support to help you with self-maintenance.
But 15% for unlimited service calls without parts seems to be very, very
steep (unless you are getting our own, dedicated, and fully-trained
service engineer supporting just your tool and located 100% on-site).

The bottom line - based on the available information, I would agree with
your conclusion to not buy anything from these guys. Unless, of cause,
they deliver due apologies for unfortunate mistakes and
misunderstandings, extend warranty for the whole period of time that it
took them to stabilize your instrument and make it fully functional, and
agree to provide good support at reasonable price afterward...

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com

On 5/27/2011 8:04 PM, rosemary.white-at-csiro.au wrote:
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} I can give you the details and you can judge.
}
} After installation, we noticed erratic EPSE signals, the EPSE detector was
} replaced 6 months later, but the cool stage still interfered with the
} detector. This went on for a further 6 months with two replacements until
} it was finally fixed, sort of. Even though it's marketed as a full ESEM
} able to be used with water vapour, it doesn't like this with the cool
} stage below about 3 degrees, which makes it much less useful than we
} anticipated. The EPSE detector finally worked correctly 14 months after
} installation.
}
} The two motherboards failed two months after installation by the
} engineers, and it took two months before they were replaced, which seemed
} rather a long time.
}
} The computer fan blew up when the engineer came to do a routine service -
} he was at the instrument, not one of us. Fortunately, we could just go to
} a local shop and get a new fan.
}
} Weirdly, one quadrant of the BSE detector also failed during a service
} visit. It took 4 months to replace the BSE detector. 5 months after
} this, the BSE diode and pre-amp failed, and it took 6 weeks for the parts
} to arrive. During installation of the replacement BSE diode and pre-amp
} by the service engineer, the SE detector died. We had to pay the $5,000
} to get it replaced.
}
} The final straw, which I didn't mention earlier, was that we were
} guaranteed, in writing, that our cryostage would fit onto the new SEM, and
} it doesn't. The company hasn't even tried to help us with this.
}
} When I asked about a maintenance contract, the branch manager specifically
} pointed out that because we'd been so expensive to them in the warranty
} period, our contract was more expensive and would not cover parts. She
} also said that the installation and warranty agreements had been heavily
} discounted to get sales and although our instrument was more expensive
} than their discounted budget, it did fall under her quote for standard
} install and warranty, so it's on their heads, in my mind, that it cost
} more than they bargained for.
}
} Unlimited callouts plus two maintenance visits would be just under 15% of
} the initial cost, whereas two maintenance visits plus two callouts per
} year would be about 7% of initial cost, and two maintenance visits with no
} callouts would be 3% of the initial cost. None of these cover parts.
}
} Anyway, I'll never purchase anything from this lot again. I get annoyed
} with the "blame the customer" attitude. I've been in this game 25 years,
} and I've never had this experience before. As I mentioned, we have a
} confocal - in my books a much more temperamental and failure-prone beast
} than an SEM - and we've had a full extended warranty on it for 10 years
} and the company has never complained that we're too expensive. We also
} have a 30-year old SEM which we still use although its mechanical parts
} are wearing out, but it just keeps on chugging on, we've had very few
} problems with it.
}
} But thanks for all the comments and numbers, it's been very useful.
}
} Rosemary
}
} Dr Rosemary White
} CSIRO Plant Industry
} GPO Box 1600
} Canberra, ACT 2601
} Australia
}
} T 61 2 6246 5475
} F 61 2 6246 5334
} E rosemary.white-at-csiro.au
}
}
} On 28/05/11 12:18 AM, "john.robson-at-boehringer-ingelheim.com"
} {john.robson-at-boehringer-ingelheim.com} wrote:
}
} }
} }
} }
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} }
} } Hi Valery,
} }
} } Again it appears that I haven't clearly conveyed my point. I don't
} } disagree
} } that 10% across the board satisfies the service companies need, and
} } expectation, of turning a profit. My point is that an across the board
} } 10%
} } charge totally disregards the individual risks (instrument type, user
} } competency, sample type, etc...) associated with each contract. A somewhat
} } analogous example would be a homeowner near a nuclear reactor in Sendai
} } Japan
} } paying for insurance at the same rate as someone living near Peabody
} } Massachusetts. Aside from the universal risks of fire (normal wear and
} } tear
} } on an instrument), accident (expensive but infrequent failure e.g. power
} } supply / lens), etc... clearly the risks associated with living in
} } Sendai...
} } potential earthquakes (instrument type-with features known to have short
} } lifespan), cyclone(sample type-known to require frequent cleaning),
} } tsunami
} } (usage - high usage multi-user facility), radioactive contamination
} } (technical competency - inexperienced / poorly supervised users) warrants
} } some add-on to the premium?
} }
} } Another analogy would be 2 drivers with the same exact make and model car.
} } One lives in the Bronx and works/drives to Manhattan has had 3 speeding
} } tickets, 2 accidents, and a DWI all in the past year. The other lives in
} } Milford Pennsylvania, works 1 mile from home and has been driving for 30
} } years without incident. Would they pay the same car insurance? I think
} } not,
} } so why would an SEM be treated any differently?
} }
} } Certainly economy of scale is an issue too, manufacturers service
} } organization vs. 3rd party providers? We also haven't mentioned response
} } time. Immediate response is a factor one should expect to increase the
} } cost
} } of your premium?
} }
} } FYI Truth be told Valery, immediately after sending my last reply I
} } regretted
} } comments I made regarding the ESEM manufacture. We only have one side of
} } the
} } story. Although I find it hard to believe 2 mother boards and a computer
} } fan
} } failure, along with multiple other failures, were caused by the operator
} } my
} } comments were based on insufficient "hearsay" information (No offense
} } intended Rosemary).
} }
} } Regards,
} } John A. Robson
} }
} } -----Original Message-----
} } X-from: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} } Sent: Friday, May 27, 2011 8:26 AM
} } To: Robson,John (AN) BIP-US-R
} } Cc: microscopy-at-microscopy.com
} } Subject: Re: [Microscopy] Re: Microscope service strategies - numbers
} }
} } Hi John,
} }
} } The determination of $50K - $60K as being a reasonable price for
} } sustainable service of $600K instrument is based on.... 10% rule of
} } thumb, but also 17+ years servicing various industrial and analytical
} } SEMs and FIBs, of which 7 years as a third-party service provider. I can
} } not speak about TEMs as I do not know that segment, but no matter how I
} } do the numbers for FIBs or SEMs, calculation for the cost of sustainable
} } (meaning: without pre-programmed End Of Life for the instrument) service
} } comes close to 10% +/- .
} }
} } I agree that a very large customer base, in close proximity from each
} } other and with the same type of instruments, may allow providing
} } sustainable service with price tag lower then the 10% "rule of thumb" -
} } maybe. Same as small customer base with diverse instruments would push
} } for higher price of the service.
} }
} } It may seem that for very expensive instruments 10% is an overkill,
} } until you come across just one case of replacing high-voltage parts or
} } major column components.
} }
} } I also agree that mentioned earlier annual service contract, priced at
} } 15% of the tool cost seem to be excessive. Unless, of cause, there was
} } something else going on behind the scenes that we do not know about. For
} } example, it could have happened that eager-to-make-a-deal sales people
} } agreed to give unconditional-no-matter-what-all-inclusive warranty to
} } win the sale, but then tool was abused during first year and most of
} } repairs were due to user damage. It is reasonable to expect that in such
} } case service organization will try to recover the losses. Who knows?
} }
} } Cheers :)
} }
} } Valery Ray
} } =================================
} } PBS&T, MEO Engineering Co., Inc.
} } 290 Broadway, Suite 298
} } Methuen, MA 01844 USA
} } Phone: +1-978-296-5063
} } US Mobile: +1-978-305-0479
} } Skype: pbstmeo
} } E-mail: vray-at-partbeamsystech.com
} } Web: www.partbeamsystech.com
} } }
} } }
}
}
}
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} 18, 31 -- Subject: Re: [Microscopy] Microscope service strategies - numbers
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 1 Jun 2011 21:00:58 -0500
Subject: [Microscopy] viaWWW: LR White

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Email: petra.rosner-at-ww.uni-erlangen.de Name: Petra Rosner

Organization: Universität Erlangen

Title-Subject: [Filtered] LR White

Message: Hello
does anybody know thomething about the shrinking of LR White.
What kind of embedding material for ultramicrotomy ( we want to cut Ag
nanoparitcles) is the one with the least shrinking?
thanks for all suggestions
Petra

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From: Christopher.Gilpin-at-utsouthwestern.edu
Date: Thu, 2 Jun 2011 13:52:15 -0500
Subject: [Microscopy] Open position for an EM technician

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Listers,

The University of Texas Southwestern Medical Center at Dallas has an immediate opening for an electron microscopy technician. The lab is a core facility serving the medical campus. We have a well-equipped lab and will be moving to a purpose built new facility at the beginning of 2012. The candidate should ideally have experience in some or all of :
Resin sample preparation and sectioning
TEM operation and ability to train others
Immunolabeling using cryo preparation methods and/or high pressure freezing, freeze substitution
Good communication and customer service skills
A willingness to work to tight deadlines and attention to detail
Digital imaging, computer and networking skills

Further information about the lab can be found at http://www4.utsouthwestern.edu/mcif/index.htm

Please contact me for more details or to arrange a preliminary phone interview.

Our institutions policy on diversity can be found at http://www.utsouthwestern.edu/utsw/cda/dept36801/files/269061.html


Christopher J Gilpin Ph.D.
Assistant Professor
Director, Molecular and Cellular Imaging Facility
K1.A04
UT Southwestern Medical Center at Dallas
5323 Harry Hines Boulevard
Dallas, TX 75390-9039
Phone +1 214 648 2827


________________________________

UT Southwestern Medical Center
The future of medicine, today.


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From: randy-nessler-at-uiowa.edu
Date: Thu, 2 Jun 2011 13:57:50 -0500
Subject: [Microscopy] Contamination on TEM CCD camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

For those running cooled CCD cameras on your TEM's, do you have a problem with them acting like cold traps, with the surface of the scintillator becoming contaminated?

Thanks,
Randy




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From: John.Mardinly-at-asu.edu
Date: Thu, 2 Jun 2011 15:37:04 -0500
Subject: [Microscopy] Contamination on TEM CCD camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Of course! That's why there is usually a control to turn off the Peltier
when the camera is not in use, or even a heater to outgas it
periodically. How much you need to use these controls, though, depends
on how clean you vacuum is.

A. John Mardinly,
ASU

-----Original Message-----
X-from: randy-nessler-at-uiowa.edu [mailto:randy-nessler-at-uiowa.edu]
Sent: Thursday, June 02, 2011 12:05 PM
To: John Mardinly

For those running cooled CCD cameras on your TEM's, do you have a
problem with them acting like cold traps, with the surface of the
scintillator becoming contaminated?

Thanks,
Randy




________________________________
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From: patpxs-at-gmail.com
Date: Fri, 3 Jun 2011 06:08:10 -0500
Subject: [Microscopy] Santovac5

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

And what if the temperature that the heat cycle obtains does not cause sublimation of the contaminants?

I've had a couple of off-line replies that are curious about this as well.
Thanks,
Randy

-----Original Message-----
X-from: John Mardinly [mailto:John.Mardinly-at-asu.edu]
Sent: Thursday, June 02, 2011 3:37 PM
To: Nessler, Randy A
Cc: microscopy-at-microscopy.com

If the oil gets decomposed by the beam, it will never come off and you
may need a new phosphor. The worse I have seen was a very old camera
that was oil coupled from the phosphor to the fiber optic-the oil leaked
out and got on the phosphor.

A. John Mardinly,
ASU


-----Original Message-----
X-from: Nessler, Randy A [mailto:randy-nessler-at-uiowa.edu]
Sent: Thursday, June 02, 2011 1:40 PM
To: John Mardinly
Cc: microscopy-at-microscopy.com

Hello Listers,

I just received an e-mail from our TEM service engineer stating that
Santovac5 is a controlled substance that must be kept secure and can't
be sold or transferred to foreign nationals, even if they are located
in the USA.

Here is what he sent me:

"Santovac-5 can be used as a space optimized lubricant (Specifically
it is used on Nuclear Launch Vehicles).
It is controlled by the Bureau of Industry and Security.
It carries an ECCN # of 1C006. Small quantities are allowed to be
exported assuming they fall under a value threshold.
If the shipment goes above this a license is required.
While this isn’t an export, transfer to a foreign national is an
export even when conducted inside the US borders.
It may seem silly but it’s 100K per violation so it is serious.

Do not allow access to the item by any foreign national.
Also never leave it alone unsecured, it is to be on your person, or
locked in a secure location until it is used."

I'm sure lots of labs have Santovac just sitting out on shelves.

Has anyone heard of this? If so, can you explain it so I understand
the reasoning? It's not super clear to me.

Have a great weekend!

Paula :-)
--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#251M, Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.2091


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10, 33 -- Subject: Santovac5
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From: patpxs-at-gmail.com
Date: Fri, 3 Jun 2011 07:51:38 -0500
Subject: [Microscopy] Re: Santovac5

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I dug through the federal regulations, whew!

I found that Santovac5 isn't one of the items but a bunch of
hydrocarbons are: The fed's list the CAS's as 25497-30-7, 124-73-2,
and 27336-23-8. Santovac is 2455-71-2. Even if it is covered the
regulations are talking about 55 gallon barrels.

Seems like someone at FEI should get their Fedreal Regulations
straight. Not that they aren't a moving target.

It appears that humanity is still safe from the dreaded and expensive
Santovac5.

Paula

Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#251M, Duke South, Green Zone
Durham, North Carolina 27710
P: 919.684.2091
On Fri, Jun 3, 2011 at 8:35 AM, Cammer, Michael
{Michael.Cammer-at-med.nyu.edu} wrote:
} And is there any research lab in the US that isn't staffed by foreign nationals?
}
} -----Original Message-----
} From: patpxs-at-gmail.com [mailto:patpxs-at-gmail.com]
} Sent: Friday, June 03, 2011 7:20 AM
} To: Cammer, Michael
} Subject: [Microscopy] Santovac5
}
}
} Do not allow access to the item by any foreign national.
} Also never leave it alone unsecured, it is to be on your person, or
} locked in a secure location until it is used."
}
}
}
} ------------------------------------------------------------
} This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email.
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10, 36 -- Subject: Re: [Microscopy] Santovac5
10, 36 -- From: Paula Sicurello {patpxs-at-gmail.com}
10, 36 -- To: "Cammer, Michael" {Michael.Cammer-at-med.nyu.edu} , Microscopy-at-microscopy.com
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From: oshel1pe-at-cmich.edu
Date: Fri, 3 Jun 2011 08:00:22 -0500
Subject: [Microscopy] Re: Santovac5

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Rats. There go my dreams of getting rich smuggling Santovac into Canada ...

Phil

} I dug through the federal regulations, whew!
}
} I found that Santovac5 isn't one of the items but a bunch of
} hydrocarbons are: The fed's list the CAS's as 25497-30-7, 124-73-2,
} and 27336-23-8. Santovac is 2455-71-2. Even if it is covered the
} regulations are talking about 55 gallon barrels.
}
} Seems like someone at FEI should get their Fedreal Regulations
} straight. Not that they aren't a moving target.
}
} It appears that humanity is still safe from the dreaded and expensive
} Santovac5.
}
} Paula
}
} Paula Sicurello, HTL (ASCP)
} Supervisor, Electron Microscope Laboratory
} Duke University Health System
} Rm.#251M, Duke South, Green Zone
} Durham, North Carolina 27710
} P: 919.684.2091
} On Fri, Jun 3, 2011 at 8:35 AM, Cammer, Michael
} {Michael.Cammer-at-med.nyu.edu} wrote:
} } And is there any research lab in the US that isn't staffed by
} } foreign nationals?
} }
} } -----Original Message-----
} } From: patpxs-at-gmail.com [mailto:patpxs-at-gmail.com]
} } Sent: Friday, June 03, 2011 7:20 AM
} } To: Cammer, Michael
} } Subject: [Microscopy] Santovac5
} }
} }
} } Do not allow access to the item by any foreign national.
} } Also never leave it alone unsecured, it is to be on your person, or
} } locked in a secure location until it is used."

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: paul_hazelton-at-umanitoba.ca
Date: Fri, 3 Jun 2011 09:30:25 -0500
Subject: [Microscopy] Re: Re: Santovac5

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Geez Phil First it's Santovac, next you'll graduate to Apiezon L, or,
help us, N. Will it stop before the bottom, before Vestopal W or (psst,
really I have some legitimate) Epon 812....

I'm gettin' worried phil ;).


paul
--
Paul R. Hazelton, PhD
Gastroenteric Diseases Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
730 William Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
Phone: 204-789-3313 (w)
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: milesd-at-us.ibm.com
Date: Fri, 3 Jun 2011 09:57:19 -0500
Subject: [Microscopy] Re: Santovac5

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I have kept my Metallputz under lock and key with my spools of gold
bonding wire, for years! 8^)

Darrell



paul_hazelton-at-umanitoba.ca wrote on 06/03/2011 10:31:27 AM:

}
} [Microscopy] Re: Re: Santovac5
}
} paul_hazelton
}
} to:
}
} Darrell Miles
}
} 06/03/2011 10:32 AM
}
} Please respond to paul_hazelton
}
}
}
}
}
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}
} Geez Phil First it's Santovac, next you'll graduate to Apiezon L, or,
} help us, N. Will it stop before the bottom, before Vestopal W or (psst,

} really I have some legitimate) Epon 812....
}
} I'm gettin' worried phil ;).
}
}
} paul
} --
} Paul R. Hazelton, PhD
} Gastroenteric Diseases Study Group
} University of Manitoba
} Department of Medical Microbiology
} 511 Basic Medical Sciences Building
} 730 William Avenue
} Winnipeg, Manitoba, Canada, R3E 3J7
} e-mail: paul_hazelton-at-umanitoba.ca
} Phone: 204-789-3313 (w)
} 204-489-6924 (h)
} Cell: 204-781-6982
} Fax: 204-789-3926
}
}
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From: oshel1pe-at-cmich.edu
Date: Fri, 3 Jun 2011 10:18:34 -0500
Subject: [Microscopy] Santovac5

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Yeah, it's a slippery slope to a sticky mess.
Phil

} Geez Phil First it's Santovac, next you'll graduate to Apiezon L, or,
} help us, N. Will it stop before the bottom, before Vestopal W or (psst,
} really I have some legitimate) Epon 812....
}
} I'm gettin' worried phil ;).
}
}
} paul
} --
} Paul R. Hazelton, PhD
} Gastroenteric Diseases Study Group
} University of Manitoba
} Department of Medical Microbiology
} 511 Basic Medical Sciences Building
} 730 William Avenue
} Winnipeg, Manitoba, Canada, R3E 3J7
} e-mail: paul_hazelton-at-umanitoba.ca
} Phone: 204-789-3313 (w)
} 204-489-6924 (h)
} Cell: 204-781-6982
} Fax: 204-789-3926

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: jehrman-at-mta.ca
Date: Fri, 3 Jun 2011 11:04:56 -0500
Subject: [Microscopy] Re: Santovac5

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Several years ago a faculty member got into a panic because he'd read
about the supposed suitability of osmium tetroxide as a weapon of
terrorism, and wanted to lock up our vast stock of the reagent (10 x 1
mL vials). Fortunately this didn't happen, and we didn't have to pay to
have corn oil showers installed throughout the building...

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf


Unfortunate Book Titles:
Handbook for the Limbless
Punishment by Robin Banks
Motorcycling for Beginners by Geoff Carless
Illustrated History of Gymnastics by John Goodbody
Care for your Kitten by Anna Mews
1587. A Year of No Importance
The English. Are They Human? Dr G.J. Rennier, 1931


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From: William.F.Tivol-at-aero.org
Date: 06/02/2011 01:48 PM
Subject: [Microscopy] Contamination on TEM CCD camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Randy,
We had such a problem on a Krios where film was used, and the
Gatan service person was able to clean the oil and other crud off the
scintillator by carefully flowing solvent (I think ethanol, but I'm not
sure at this point) over it. It was a pretty tricky process, so I would
definitely call the appropriate service person rather than trying it
yourself. You might be able to do it yourself once you've seen it done.
Yours,
Bill



X-from: randy-nessler-at-uiowa.edu
To: William.F.Tivol-at-aero.org


And what if the temperature that the heat cycle obtains does not cause
sublimation of the contaminants?

I've had a couple of off-line replies that are curious about this as well.
Thanks,
Randy


Of course! That's why there is usually a control to turn off the Peltier
when the camera is not in use, or even a heater to outgas it periodically.
How much you need to use these controls, though, depends on how clean you
vacuum is.

A. John Mardinly,
ASU


For those running cooled CCD cameras on your TEM's, do you have a
problem with them acting like cold traps, with the surface of the
scintillator becoming contaminated?

Thanks,
Randy


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 3 Jun 2011 17:39:45 -0500
Subject: [Microscopy] viaWWW:Clamshell Cu TEM grids

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 3 Jun 2011 17:40:37 -0500
Subject: [Microscopy] viaWWW:Epo-fix epoxy did not set in EPMA mount

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Email: hrd-at-uoregon.edu Name: Hannah Dietterich

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Title-Subject: [Filtered] Help: Epo-fix epoxy did not set in EPMA mount

Message: Hello,

I have an acrylic mount for the electron microprobe with wells into
which I have placed mineral samples. I then filled the wells with
epo-fix cool mounting epoxy, but after 2 days of drying at room
temperature and some time on a hot plate, the epoxy is still soft at the
base of the wells. Fortunately, it appears to be hardened at the top
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not mixed well enough, but my samples are not replaceable so I am
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Please respond if you have any ideas or suggestions as to how to get the
existing epoxy to harden fully, or how to effectively plug the wells to
allow the mount to be placed in the microprobe.

Thank you,
Hannah Dietterich

--
Hannah R. Dietterich
Ph.D. Candidate
Department of Geological Sciences
University of Oregon

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From: jquinn-at-ms.cc.sunysb.edu
Date: Fri, 3 Jun 2011 18:13:29 -0500
Subject: [Microscopy] Fwd: Santovac5

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Small quantities are exempt. Please see:
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JQUinn

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From: gary-at-gaugler.com
Date: Fri, 3 Jun 2011 20:30:37 -0500
Subject: [Microscopy] S-3500 odd system

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Has anyone used a S-3500 W, DP with EBSD? This seems
like an odd configuration with EBSD. It does have a
Dewar EDS.

gary g.



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From: tbargar-at-unmc.edu
Date: Mon, 6 Jun 2011 10:30:56 -0500
Subject: [Microscopy] Problem with LR White

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When embedding particulate samples such as cell pellets, nanoparticles,
etc. in LR White, I get a crumbling sample. That is the particles are
embedded, but sample does not maintain a solid block. I don't have this
problem with pieces of solid tissue. Has anyone out there encountered
this problem?


Tom Bargar
University of Nebraska Medical Center
Core Electron Microscopy Research Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu

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From: PhillipsT-at-missouri.edu
Date: Mon, 6 Jun 2011 11:39:37 -0500
Subject: [Microscopy] Problem with LR White

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One possibility is that the polymerization occurred at different rates in the cells or nanoparticles as compared to free plastic in surrounding areas. This is especially obvious when using a UV polymerized resin like LR Gold but I suspect it happens in all resins even heat-polymerized LR White. Uneven polymerization can result from the UV light or heat not penetrating evenly or differential infiltration of one resin component into the tissue. Another possibility is that the tissue regions shrink during polymerization and pull away from the surrounding plastic. If it was easy, even the heathen molecular geneticists could do the magic; this is why only the best scientists become microscopists.




Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: tbargar-at-unmc.edu [mailto:tbargar-at-unmc.edu]
Sent: Monday, June 06, 2011 10:32 AM
To: Phillips, Thomas E.

When embedding particulate samples such as cell pellets, nanoparticles,
etc. in LR White, I get a crumbling sample. That is the particles are
embedded, but sample does not maintain a solid block. I don't have this
problem with pieces of solid tissue. Has anyone out there encountered
this problem?


Tom Bargar
University of Nebraska Medical Center
Core Electron Microscopy Research Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu

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16, 31 -- "microscopy-at-microscopy.com"
16, 31 -- {microscopy-at-microscopy.com}
16, 31 -- Date: Mon, 6 Jun 2011 11:39:36 -0500
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From: dmywong-at-ucdavis.edu
Date: Mon, 6 Jun 2011 17:16:07 -0500
Subject: [Microscopy] Photobleaching prevention for live cells

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I am trying to view live cells using a confocal laser scanning
microscope and experience immense photobleaching with my cell while
trying to do the z-slices. Any idea if there is a certain "antifade"
medium I could suspend the live cells with?

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From: dmywong-at-ucdavis.edu
Date: Mon, 6 Jun 2011 17:17:49 -0500
Subject: [Microscopy] Fluorescence Quantification

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I am looking for a program that could quantify fluorescence for
confocal imaging. Do you know of any?
______________________________
Diana M. Wong
Graduate Student

Franz Group
University of California, Davis
Department of Chemistry
One Shields Ave
Davis, CA 95616
dmywong-at-ucdavis.edu
http://chemgroups.ucdavis.edu/~franz/





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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 7 Jun 2011 07:30:21 -0500
Subject: [Microscopy] viaWWW:About cross section study by SEM

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Email: yun.peng-at-ge.com Name: Peng, Yun

Organization: GE-GRC

Title-Subject: [Filtered] About cross section study by SEM

Message: I am a relative newcomer to the Microscopy field and need some
advice for the sample preparation for cross section study of fiber
material. This kind of film material (Polyethylene, polypropylene etc.)
has pores structure and orientation. The thickness is around 30-50
microns. It is too tough to break in liquid nitrogen. We had ever tried
to cut it in liquid nitrogen by a blade. But the pores structure is some
distorted. meanwhile, I found cryostat microtome doesnÂ’t work for our
case. Is there any trick for this case?
I had ever got some information from this website before. I still have
some questions about it.

1. Insert the material in a small diameter tube (thin drinking straws
are ideal). Cut the straw down to about 3cms tall. Block one end with
wax, modeling clay or similar material.
Q&A: Is wax, modeling clay or similar material only used to block end?
If it is also filled in the big gap between straw and film materials?
2. Using a syringe force water into the straw and block the end as above.
Q&A: Is water filled in the big gap between straw and film?
3. Drop the straw into liquid nitrogen then follow method A part 2 above.
Q&A: should we cut the sample by blade or break it by tweezers?

I am looking forward your reply and give me a hand. I appreciate it.

Thanks
Yun Peng


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From: paulrc-at-bilbo.bio.purdue.edu
Date: Tue, 7 Jun 2011 10:24:43 -0500
Subject: [Microscopy] Open Position at Purdue Univ.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Yun,

I don't have any comments about the methods you list below, but I would be inclined to try a typical metallurgical cross-section. Mount the sample in a material with similar hardness (epoxy may work fine), and grind and polish to achieve your cross-section. There should be plenty of facilities and people at GE-GRC that are familiar with metallurgical sectioning. Good luck.

Diane
___________________________________________

Diane Ciaburri
Materials Analysis
General Dynamics
100 Plastics Ave., Rm 2517A
Pittsfield MA  01201
phone: (413) 494-3430
email: diane.ciaburri-at-gd-ais.com
___________________________________________




-----Original Message-----
X-from: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Tuesday, June 07, 2011 8:30 AM
To: Ciaburri, Diane A.

Hi All,

Later this year I'll be leaving Purdue for a new challenge. The
following position will become available:


Director, EM Facility/Project Leader, Structural Virology EM Studies –
West Lafayette – Biological Sciences

Develop and maintain the EM Facility as a world-class resource allowing
Purdue’s Structure Group to continue to function as a world leader in
structural biology. Applicants should apply online at
www.purdue.edu/jobs and reference posting number 1100885.

Required:
• Master’s degree in Science.
• Minimum of five years of experience in conventional transmission
electron microscopy.
• Superior organizational skills.
• Ability to manage a large, multi-user research laboratory with no
immediate supervision.
• Ability to solicit and evaluate advice from and interact with
appropriate professionals to maintain the equipment in optimal condition.
• Capable of using independent judgment for purchases.
• Ability to quantitatively analyze scientific results.
• Above-average attention to detail and be able to communicate
effectively with faculty, staff, and students.
• Ability to research or develop new technologies and be capable of
evaluation and recommending new instrumentation.
• Willing to learn/travel and keep abreast of new technology.
• Ability to use and teach others to use all the equipment related to
the EM facility.
• Ability to use and teach others in the techniques of 3D image
reconstructions.
• Ability to manage the managerial aspects of this position with the
research and supervisory component.
Preferred:
• PhD in Science.
• Background in life sciences.
• Formal training in transmission electron microscopy.
• Experience in cryo-electron microscopy and/or cryo-electron tomography.
• Experience in managing the operations of a research facility,
troubleshooting with high precision instruments, and teaching students
and postdoctoral researchers and staff how to use electron microscopes.
• Experience in managing service contracts and interacting with service
engineers.
• Experience with three-dimensional image analysis and publication in
peer-reviewed journals.
Additional Information:
• A background check will be required for employment in this position.
• FLSA: Exempt (Not Eligible For Overtime)
• Retirement Eligibility: Fidelity Contributions Immediately
• Purdue University is an equal opportunity, equal access, affirmative
action employer.

Cheers,
Paul

--
Paul Chipman
Director, Biological Electron Microscopy Facility
Purdue University
765-494-1487



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From: protrain-at-emcourses.com
Date: Tue, 7 Jun 2011 10:29:39 -0500
Subject: [Microscopy] RE: viaWWW:About cross section study by SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

I wrote the paper that you discuss so let me try to help you? The basic
idea is a media stiffens the fibre and forces it to fracture. Firstly to
answer your questions.

1. the wax is simply to block one end

2. water may be used to provide a solid interface that will fracture cleanly

3. use strong tweezers or grippers (in the UK we would say pliers) to bend
the straw unit until fracture occurs.

OR

A infiltrate the fibres within the drinking with straw a water soluble
carbon solution.
B Once fully infiltrated block one end with wax as above; allow to dry
fully (hours).
C Place in liquid nitrogen until it stops bubbling.
D Remove and with two strong grippers (UK we would say pliers) bend
the straw unit to fracture.

We have many times conducted investigation of fibre internal structure by
using this method.

Come back to me if you need more?

Enjoy

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



Email: yun.peng-at-ge.com Name: Peng, Yun

Organization: GE-GRC

Title-Subject: [Filtered] About cross section study by SEM

Message: I am a relative newcomer to the Microscopy field and need some
advice for the sample preparation for cross section study of fiber
material. This kind of film material (Polyethylene, polypropylene etc.)
has pores structure and orientation. The thickness is around 30-50
microns. It is too tough to break in liquid nitrogen. We had ever tried
to cut it in liquid nitrogen by a blade. But the pores structure is some
distorted. meanwhile, I found cryostat microtome doesnÂ’t work for our
case. Is there any trick for this case?
I had ever got some information from this website before. I still have
some questions about it.

1. Insert the material in a small diameter tube (thin drinking straws
are ideal). Cut the straw down to about 3cms tall. Block one end with
wax, modeling clay or similar material.
Q&A: Is wax, modeling clay or similar material only used to block end?
If it is also filled in the big gap between straw and film materials?
2. Using a syringe force water into the straw and block the end as above.
Q&A: Is water filled in the big gap between straw and film?
3. Drop the straw into liquid nitrogen then follow method A part 2 above.
Q&A: should we cut the sample by blade or break it by tweezers?

I am looking forward your reply and give me a hand. I appreciate it.

Thanks
Yun Peng


Login Host: 125.98.130.140
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From: xjsun-at-ualberta.ca
Date: Tue, 7 Jun 2011 12:02:10 -0500
Subject: [Microscopy] Photobleaching prevention for live cells

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,

I am not sure if someone responded to you as confocal list might be a better
place to post these questions. Nevertheless, here are few things you might
consider.

1) First, make sure your system is well aligned and in the peak performance.
Check pinhole alignment, make sure lens is clean, etc.

2) Make sure your system is at most sensitive settings. For live cell
imaging, it is always a compromise of many factors. Here are few things to
look into:
a) check the PMTs setting should be at the most sensitive level with
acceptable noise level.
b) set pinhole to somewhat larger. Depending on the lens you use,
this could be as large as 2-3 airy disk size.
c) reduce resolution by dropping zoom value. Your
photobleach/toxicity level increases by power of 2 of the zoom value. Pixel
value should be match or a bit below the Nyquist value because with live
cell imaging (unless you use a well corrected water immersion lens),
aberration will cause resolution drop.
d) check your average value and scanning speed. Remember, slower the
scan, more average, more dosage of light will be put onto your sample.
Therefore, reduce those parameters if you can afford it (depending on your
signal-noise level requirement).

e) Use the least amount of excitation light (laser setting) as you
could afford.
f) Use a more photo-stable dye.

3) If all above failed, you could try some chemicals to reduce
photobleaching rate. We tested a whole bunch of them. One seems working the
best is using Trolox at ~300uM either overnight or 2 hrs before imaging
(added to the media). But remember this might interfere with the biological
process you are investigating. Therefore, please do proper control first.

As to fluorescence quantification, I do not know what you want to do. ImageJ
comes free (or you can search Fuji which is imageJ with some plugin
prepackaged in). There are many plugins for various purposes. So you need to
do some home work to find the right plugin for your quantification.

Best wishes,

xuejun


Xuejun SUN, Ph.D.
Dept. Exp. Oncology
Cross Cancer Institute
11560 University Ave.
Edmonton Alberta, T6G1Z2

Phone (780) 432-8898 (office)
(780) 432-8468/8458 (lab)
Fax: (780) 432-8425
Preferred Email: xjsun-at-ualberta.ca

-----Original Message-----
X-from: dmywong-at-ucdavis.edu [mailto:dmywong-at-ucdavis.edu]
Sent: Monday, June 06, 2011 4:25 PM
To: xjsun-at-ualberta.ca

I am trying to view live cells using a confocal laser scanning
microscope and experience immense photobleaching with my cell while
trying to do the z-slices. Any idea if there is a certain "antifade"
medium I could suspend the live cells with?

==============================Original Headers==============================
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From: bozzola-at-siu.edu
Date: Tue, 7 Jun 2011 16:09:00 -0500
Subject: [Microscopy] ultramicrotome questions

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I know this issue has surfaced several times, but I am gathering
information about researcher's experiences with ultramicrotomes.

Reply to as many questions as you feel comfortable answering.

More specifically:

1. How long have you owned your ultramicrotome?
2. How often it is used?
3. How many different users?
4. How versatile has it been (i.e., suitable to cut different specimen types)?
5. How reliable has it been?
6. Regarding repairs: how was the cost and was it properly repaired?
7. What is the brand name?
8. Would you purchase another one?

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 7 Jun 2011 20:45:19 -0500
Subject: [Microscopy] viaWWW:Post-doc position opening

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Title-Subject: [Filtered] Post-doc position opening

Message: Industrial post-doc position in advanced TEM/AEM of semiconductors*

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From: rintugr-at-gmail.com
Date: Wed, 8 Jun 2011 12:43:07 -0500
Subject: [Microscopy] help needed epi-microspectrophotometer

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

Chris Brandon is looking for the following piece of equipment. Any
help will be very much appreciated. Please contact us off list if you
can help.

Thanks so much,

Soumitra Ghoshroy
EM Center
University of South Carolina
803-777-7085
http://www.emc.sc.edu

****************************************************************************************************************************************************************************************
Hi,

I’m a graduate student at the University of South Carolina and I’m
looking for a lab with a epi-microspectrophotometer, somewhere in the
range of ~ 200 miles or so of Columbia, South Carolina, that would be
kind and willing enough to discuss the possibility of using it. Or
any information on somebody I might contact would also be greatly
appreciated.

I’m in the initial stages of considering the possibility of measuring
the absorbance spectra of the Daphnia compound eye. I’m interested in
knowing the range of spectral sensitivity in the compound eye across
multiple species. To the best of my knowledge, most of the literature
exploring the spectral sensitivity of compound eyes has employed this
instrument.

Thanks Much,

Chris
brandonc-at-email.sc.edu


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From: jean-paul.bailon-at-polymtl.ca
Date: Wed, 8 Jun 2011 16:02:36 -0500
Subject: [Microscopy] SEM and WDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

We are in the process of evaluating WDS systems for our SEM-FEG (JEOL
7600F). Does anyone have data comparing the performance of the WDS system
from Noran and Oxford? Any comments (positive or negative) are welcomed
either on this list or privately off list if you prefer.


Jean-Paul Baïlon

++++++++++++++++++++++++++++++++++++++
Prof. Jean-Paul Baïlon {mailto:jean-paul.bailon-at-polymtl.ca}
Génie mécanique Tél: +1(514) 340 4711, p. 4260
École Polytechnique Fax: +1(514) 340 4468
CP 6079, Succursale Centre-Ville
Montréal (QC) Canada H3C 3A7
++++++++++++++++++++++++++++++++++++++






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From: ehaller-at-health.usf.edu
Date: Wed, 8 Jun 2011 16:19:22 -0500
Subject: [Microscopy] Asking for experiences from owners of Desktop SEMs

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We're considering purchasing a new desktop SEM. All of our imaging is done below 15,000x, and all of it is of coated specimens. We have access to a research grade SEM in our building and a field-emission SEM on campus. We want the convenience of our own instrument. How rugged are the desktops, and how dependable are they? We will not be getting a service contract. We would be getting a 15kV system that magnifies to 30,000x with a backscattered detector. We don't have the space for a full sized SEM, nor the budget.

Ed Haller

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119

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From: naomi_mccallum-at-health.qld.gov.au
Date: Wed, 8 Jun 2011 22:47:19 -0500
Subject: [Microscopy] Fwd: RE: viaWWW:About cross section study by SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

We have also had success with fracturing hair specimens using the
technique that Steve described, using the mountant for cryostat
microtomy (when carbon wasn't available). The specimen was then rinsed
in water then alcohol to dry. And if in a hurry, wrapping in aluminium
foil (or some small zip-lock bags, some will completely shatter) has
also achieved success.

Steve's reference to placing in liquid nitrogen until it stops bubbling
was the critical step. We found that it is very important to have the
specimen as cold as possible to get it to snap rather than just keep
bending.

I can confirm that the 'cracked' transverse section is far superior to
any we achieved previously by cutting.

Kind regards
Naomi

} } } {protrain-at-emcourses.com} 6/8/2011 1:43 am } } }



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Hi

I wrote the paper that you discuss so let me try to help you? The
basic
idea is a media stiffens the fibre and forces it to fracture. Firstly
to
answer your questions.

1. the wax is simply to block one end

2. water may be used to provide a solid interface that will fracture
cleanly

3. use strong tweezers or grippers (in the UK we would say pliers) to
bend
the straw unit until fracture occurs.

OR

Ainfiltrate the fibres within the drinking with straw a water soluble
carbon solution.
BOnce fully infiltrated block one end with wax as above; allow to dry
fully (hours).
CPlace in liquid nitrogen until it stops bubbling.
DRemove and with two strong grippers (UK we would say pliers) bend
the straw unit to fracture.

We have many times conducted investigation of fibre internal structure
by
using this method.

Come back to me if you need more?

Enjoy

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967

www.emcourses.com



Email: yun.peng-at-ge.com Name: Peng, Yun

Organization: GE-GRC

Title-Subject: [Filtered] About cross section study by SEM

Message: I am a relative newcomer to the Microscopy field and need some

advice for the sample preparation for cross section study of fiber
material. This kind of film material (Polyethylene, polypropylene etc.)

has pores structure and orientation. The thickness is around 30-50
microns. It is too tough to break in liquid nitrogen. We had ever tried

to cut it in liquid nitrogen by a blade. But the pores structure is
some
distorted. meanwhile, I found cryostat microtome doesn’t work for our

case. Is there any trick for this case?
I had ever got some information from this website before. I still have

some questions about it.

1. Insert the material in a small diameter tube (thin drinking
straws
are ideal). Cut the straw down to about 3cms tall. Block one end with

wax, modeling clay or similar material.
Q&A: Is wax, modeling clay or similar material only used to block end?

If it is also filled in the big gap between straw and film materials?
2. Using a syringe force water into the straw and block the end as
above.
Q&A: Is water filled in the big gap between straw and film?
3. Drop the straw into liquid nitrogen then follow method A part 2
above.
Q&A: should we cut the sample by blade or break it by tweezers?

I am looking forward your reply and give me a hand. I appreciate it.

Thanks
Yun Peng


Login Host: 125.98.130.140
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From: piper1960-at-hotmail.com
Date: Thu, 9 Jun 2011 08:44:20 -0500
Subject: [Microscopy] BSD problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Hello,

When trying to get images from our BSD,I can get an image in the "high" range (but with faint white lines extending across the screen that rotate off of horizontal at lower scan speeds), but it does not get bright get enough contrast. When it is turned to "very high" range, there are just a series of black and white horizontal lines that zip across the screen.

Any ideas of what to do?

Thanks so much,

Mark



T. Markham Puckett, Ph.D.
Associate Professor of Geology
Department of Physics and Earth Science
P.O. Box 5130
University of North Alabama
Florence, Alabama 35632-0001
“Why, sometimes I’ve believed as many as six impossible things before breakfast.” The White Queen to Alice, Through the Looking-Glass

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From: piper1960-at-hotmail.com
Date: Thu, 9 Jun 2011 08:54:47 -0500
Subject: [Microscopy] BSD problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Hello,

When trying to get images from our BSD,I can get an image in the "high" range (but with faint white lines extending across the screen that rotate off of horizontal at lower scan speeds), but it does not get bright get enough contrast. When it is turned to "very high" range, there are just a series of black and white horizontal lines that zip across the screen.

Any ideas of what to do?

Thanks so much,

Mark



T. Markham Puckett, Ph.D.
Associate Professor of Geology
Department of Physics and Earth Science
P.O. Box 5130
University of North Alabama
Florence, Alabama 35632-0001
“Why, sometimes I’ve believed as many as six impossible things before breakfast.” The White Queen to Alice, Through the Looking-Glass

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From: bthomson-at-21cm.com
Date: Thu, 9 Jun 2011 11:39:36 -0500
Subject: [Microscopy] Re: BSD problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello, Mark,

Sometimes these types of problems with the BSD can be corrected by doing
a 'Black Level Calibration', which, on some microscopes, can be found in
the 'CZ Detector Calibration' tab. Sometimes they require this to be
done rather frequently to operate optimally. This happens more often
with my STEM detector, which is a similar solid state detector.


Bruce Thomson
Microscopist, Imaging
bthomson-at-21cm.com

21st Century Medicine
14960 Hilton Drive
Fontana, CA. 92336
ph. (909) 466-8633
fax (909) 466-8618
www.21cm.com






This message has been scanned for any potential malware.


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From: steven.samuelsson-at-sri.com
Date: Thu, 9 Jun 2011 12:11:11 -0500
Subject: [Microscopy] Suggestions for a 3-D Imager

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listserve,

Am working with an engineer on a proposal that involves predictive
modeling: processes and procedures for silicone wafer etching and
design. I have been included because they wish to monitor etchings via
some kind of imager. Although this is outside of my level of expertise,
the intrigue has brought me into the project. Now I need to discover
our options and hope turn-key systems, at affordable prices, are
available. There are a number of parameters and restrictions and are
listed here.

-object is a 6" silicone wafer; submerged in/out of 5% HF acid with the
imaging taking place remote to the bath. Robot would likely pull out
the wafer and position on an imager stage (or the equivalent) then
return to bath, etc.
-most of the 6" disc will need to be imaged; we realize that fields will
be tiled together
-resolution: ~10um.
-capture rate is a few images each hour; maybe more but no video rate.
-wish to be able to display image sets in 3-D (much like SEMs)
-capital limit at ~$15K

Thanks so much for suggestions.

Steve

--
Steven Samuelsson, PhD
Director
Cell and Molecular Imaging Facility
100-51
SRI International, Inc.
333 Ravenswood Ave
Menlo Park, CA 94061
(650) 859-2980


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From: arrowood-at-utep.edu
Date: Thu, 9 Jun 2011 12:54:33 -0500
Subject: [Microscopy] problem with LR White

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Could it be that the particle/cell loading of the resin is too high?  Or that the dispersion of the particles in the resin is not uniform?  If particles touch each other, or nearly touch, a composite resin/particle material is often very brittle, and if the interfacial bond with the particles is not inherently strong, the material can be dreadfully fragile.  (This comment is not based on LR White resins specifically.)
-------Roy Arrowood



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From: kenconverse-at-qualityimages.biz
Date: Thu, 9 Jun 2011 14:54:13 -0500
Subject: [Microscopy] BSD problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Mark,
There's so much you haven't told us. Is this a solid state BSE detector,
PMT (Robinson) or MCP (micro channel plate)? Is it under mechanical control
or computer control? What is your beam voltage? How much beam current are
you using? How far is the sample from the detector? What is the atomic #
of the sample? What is the sample tilt?

All of these things will affect how much signal is available and it sounds
like your basic problem is low signal level, although messing with the dark
level or DC off set at high gains can be very touchy. The lines are likely
60Hz interference or possibly the HV oscillator (20kHz-50kHz). More signal
will mask them better.

Using 0 tilt, a fairly short WD (3 or 4 mm from the detector), High kV (20kV
or above), large spot size (low condenser lens current) and a heavy element
sample will all increase your signal level. A diode type detector is the
least sensitive and is particularly poor below 10kV. A Robinson or MCP may
do better at low voltages. If the detector is computer controlled, it may
have a feature that will allow it to set its gain by itself. If it's all
manual, be aware that it may be VERY touchy in the highest gain setting.

Give us a little more info.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: piper1960-at-hotmail.com [mailto:piper1960-at-hotmail.com]
Sent: Thursday, June 09, 2011 10:02 AM
To: kenconverse-at-qualityimages.biz


Hello,

When trying to get images from our BSD,I can get an image in the "high"
range (but with faint white lines extending across the screen that rotate
off of horizontal at lower scan speeds), but it does not get bright get
enough contrast. When it is turned to "very high" range, there are just a
series of black and white horizontal lines that zip across the screen.

Any ideas of what to do?

Thanks so much,

Mark



T. Markham Puckett, Ph.D.
Associate Professor of Geology
Department of Physics and Earth Science
P.O. Box 5130
University of North Alabama
Florence, Alabama 35632-0001
"Why, sometimes I've believed as many as six impossible things before
breakfast." The White Queen to Alice, Through the Looking-Glass


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 9 Jun 2011 18:38:54 -0500
Subject: [Microscopy] viaWWW:retired Siemens EM 101

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Email: jnowak51-at-comcast.net Name: J. Nowak

Organization: NorthShore University HealthSystem, Evanston, IL

Title-Subject: [Filtered] retired Siemens EM 101
Message: We're about to dispose of (i.e. trash) a Siemens EM 101. I
understand this is quite old, but it was still operational not too long
ago, and I suspect some others might still be in use. If anyone has any
use for this instrument please contact me.

Jan Nowak, PhD, MD
Department of Pathology
NorthShore University HealthSystem
Evanston, IL 60201
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 9 Jun 2011 19:09:42 -0500
Subject: [Microscopy] viaWWW:Leica SP2 confocal/multiphoton

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Email: sherry.clendenon-at-gmail.com Name: Sherry G Clendenon

Organization: Indiana University

Title-Subject: [Filtered] Leica SP2 confocal/multiphoton

Message: Does anyone have factory service manuals for the Leica TCS SP2
MP system (or even just the Leica TCS SP2)?
I've recently started working in a group with an instrument that has
been off service contract for some number of years and is not likely to
be reinstated in the near future. We need to do some basic maintenance
on the system and some minor repairs.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 10 Jun 2011 07:20:51 -0500
Subject: [Microscopy] viaWWW: TEM : Electron Beam is not getting proper URGENT

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Friends,
I am facing the strange TEM alignment problem problem,

I have found the following observations :
1. When we just on the filament, it gives bright beam for a just
second, then its intensity become very low.
2. Very low intensity beam is getting on only LM aperture, exactly at 16
degree temp, 1-2 emission step with 1-5 mA emission current.
3. If I increase the magnification higher than LM 490 the beam gets
disappear.
4. If we increase or decrease temp. from 16 degree beam getting disappear.
5. If we increase the emission step above 2, beam getting disappear.
6. If we click on alignment, beam getting disappear.

What would be solution for the above mentioned problem.
Plz respond as soon as possible.


-------------------------------------------------------------------------
Ravindra Thakkar
Cryo TEM - Central Facility,
309 - CRNTS,
I.I.T. Bombay,
Mumbai - 400076 (INDIA)
Tel. : +91-22-25764688/4681
Mo. : +91-9769474636
E-mail : ravi.thakkar-at-iitb.ac.in
-------------------------------------------------------------------------


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From: jmircheski-at-us.es
Date: Fri, 10 Jun 2011 07:52:33 -0500
Subject: [Microscopy] The Perfect Loop - is it perfect?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I had the chance to acquire a Perfect Loop recently, thinking that I can
increase the quality of the collected sections. Unfortunately, it was not
that much helpful (at least in my hands). I lose plenty of good section when
picking them up with the "perfect" loop. The grids that I routinely use are
slot grids coated with Formvar, and it is very difficult to transfer from
the loop to the grid. I bought tabbed grids in order to handle them better,
but then I had to cut the tab, so I had to buy cutter tweezers...
All in all, a tool that didn't deserve the investment. But before I leave it
in some box and forget it for years, I'd like to hear if there is anybody
out there that has used it or still uses it and if there are any special
tricks that I can apply. In the meantime, I will still call it the
"Imperfect Loop".

Regards, and bon voyage to all the people that are out of their offices!

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS)
Hosp.Univ. Virgen del Rocío/CSIC/Univ. de Sevilla y
Dpto. Fisiologia Médica y Biofísica
Universidad de Sevilla
Facultad de Medicina
Avda. Sánchez-Pizjuán 4
41009-Sevilla
 
Phone:+34-954556103
Fax:+34-954551769
e-mail: jmircheski-at-us.es




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From: mcauliff-at-umdnj.edu
Date: Fri, 10 Jun 2011 08:35:59 -0500
Subject: [Microscopy] Re: The Perfect Loop - is it perfect?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I have had excellent results with the Perfect Loop and use it all the
time. However, I am not using formvar coated grids, just plain copper mesh.

Geoff


On 6/10/2011 8:53 AM, jmircheski-at-us.es wrote:
}
}
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}
} I had the chance to acquire a Perfect Loop recently, thinking that I can
} increase the quality of the collected sections. Unfortunately, it was not
} that much helpful (at least in my hands). I lose plenty of good section when
} picking them up with the "perfect" loop. The grids that I routinely use are
} slot grids coated with Formvar, and it is very difficult to transfer from
} the loop to the grid. I bought tabbed grids in order to handle them better,
} but then I had to cut the tab, so I had to buy cutter tweezers...
} All in all, a tool that didn't deserve the investment. But before I leave it
} in some box and forget it for years, I'd like to hear if there is anybody
} out there that has used it or still uses it and if there are any special
} tricks that I can apply. In the meantime, I will still call it the
} "Imperfect Loop".
}
} Regards, and bon voyage to all the people that are out of their offices!
}
} Dr. Josif Mircheski
} ____________________________________________________________________________
} ___
} Instituto de Biomedicina de Sevilla (IBIS)
} Hosp.Univ. Virgen del Rocío/CSIC/Univ. de Sevilla y
} Dpto. Fisiologia Médica y Biofísica
} Universidad de Sevilla
} Facultad de Medicina
} Avda. Sánchez-Pizjuán 4
} 41009-Sevilla
}
} Phone:+34-954556103
} Fax:+34-954551769
} e-mail: jmircheski-at-us.es
}
}
}
}
} ==============================Original Headers==============================
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--
--
**********************************************
Geoff McAuliffe, Ph.D.
Neuroscience and Cell Biology
Robert Wood Johnson Medical School
675 Hoes Lane, Piscataway, NJ 08854
voice: (732)-235-4583
mcauliff-at-umdnj.edu
**********************************************





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From: chaueter-at-bcm.edu
Date: Fri, 10 Jun 2011 12:39:16 -0500
Subject: [Microscopy] Re: The Perfect Loop - is it perfect?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Here is a how I use it: after cutting the ultra sections, I separate them
(by ones, twos, threes etc.) and then lower the loop on top of them,
avoiding that the rim of the loop touches the sections. Then, I raise the
loop, trying to minimize the water droplet taken by the loop by raising the
loop near the edge of the boat. Then, while holding the grid with tweezers
(grid is single slot, formvar coated), I touch the loop on the grid surface,
trying to match the orientation of the section with the orientation of the
slot so that it sticks to the film only, but not on the metal. The tricky
part is there - the presence of the tweezers' tips prevents that the loop
and the grid stick perfectly and to easily transfer the section. This is the
point where I lose most of the sections. I used the tabbed slot grids in
order to remove the tip away from the contact area, but then I still have
problems while picking up the sections and transferring them with the loop
at the grid. Also, the tabs need to be removed, so I have to put three more
steps in the handling of the grid - I lose grids there, too.
So, I guess this explanation can help somebody to tell me what I do wrong,
or where I can improve. And, I have been trying various modes, for months
now...

Thanks again and regards,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS)
Hosp.Univ. Virgen del Rocío/CSIC/Univ. de Sevilla y
Dpto. Fisiologia Médica y Biofísica
Universidad de Sevilla
Facultad de Medicina
Avda. Sánchez-Pizjuán 4
41009-Sevilla
 
Phone:+34-954556103
Fax:+34-954551769
e-mail: jmircheski-at-us.es


-----Original Message-----
X-from: Ralph Common [mailto:common-at-msu.edu]
Sent: Friday, June 10, 2011 3:10 PM
To: jmircheski-at-us.es

Josif,

I also use the perfect-loop for naked grids and it works perfectly. It is most useful when ribbons are not achieved and sections are all individual.

I tried it with coated grids for a short while and had trouble like you described. I did not hold the grid but had it sitting on a piece of filter paper. I got the best results by first filling the open loop with as many sections as would fit.
That way when they moved with the water being wicked out there were still sections covering the slot of the grid.

Getting the final bit of water out between the grid and the loop was where I had the most trouble. I finally gave up as it was easier to take the time to trim better and make ribbons of sections. I pick them up the old fashioned way of dipping the grid into the water of the boat, hooking the top of the ribbon over the edge of the grid and lifting the grid up at a fairly steep angle so that the rest of the ribbon lays nicely across the slot of the grid. Newly coated grids or ones that have been glow discharged are needed to do this for older ones tend to be hydrophobic and the sections will "run away".

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.

________________________________
X-from: {jmircheski-at-us.es}
Reply-To: {jmircheski-at-us.es}

Hi Josif,

The best technique I've tried in getting sections onto a coated slotted grid with consistent results is to use homemade support films (e.g. formvar or butvar) and a domino rack (EMS# 70620). The domino rack is a great investment. I use it everytime I transfer serial sections on coated slotted grids.

After casting the film on water surface, the domino rack is carefully used to pick up the film. The film on the rack is allowed to dry. Sections are picked up with the slotted grid (The grid serves now as your loop). The slotted grid containing the sections suspended in water is carefully placed on the film on the rack and allowed to dry.

This technique is carefully described in Biological Specimen Preparation for Correlative Light and Electron Microscopy by David Moran and Carter Rowley.

After reading your post, I wanted to start looking for my commercial perfect loop. It's been missing for a while but I don't think I need it for now.

Regards,

Claire

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From: larry-at-cymru666.plus.com
Date: Sat, 11 Jun 2011 00:08:18 -0500
Subject: [Microscopy] Re: viaWWW: TEM : Electron Beam is not getting proper URGENT

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Ravindra,

You don't say if this a FEG of W/LaB6 source but, assuming a W/LaB6 source, the first thing I would do is remove the wehnelt and check the physical alignment of the filament in the wehnelt and that the whole filament assembly is securely fastened in position.

My first guess at what is happening is that a physical misalignment of the filament means the electrons are coming out of the wehnelt at an odd angle. As the filament heating is adjusted, the angle changes (or the filament moves).

Larry


On 10 Jun 2011, at 13:26, microscopylistserver-noreply-at-microscopy.com wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Dear Friends,
} I am facing the strange TEM alignment problem problem,
}
} I have found the following observations :
} 1. When we just on the filament, it gives bright beam for a just
} second, then its intensity become very low.
} 2. Very low intensity beam is getting on only LM aperture, exactly at 16
} degree temp, 1-2 emission step with 1-5 mA emission current.
} 3. If I increase the magnification higher than LM 490 the beam gets
} disappear.
} 4. If we increase or decrease temp. from 16 degree beam getting disappear.
} 5. If we increase the emission step above 2, beam getting disappear.
} 6. If we click on alignment, beam getting disappear.
}
} What would be solution for the above mentioned problem.
} Plz respond as soon as possible.
}
}
} -------------------------------------------------------------------------
} Ravindra Thakkar
} Cryo TEM - Central Facility,
} 309 - CRNTS,
} I.I.T. Bombay,
} Mumbai - 400076 (INDIA)
} Tel. : +91-22-25764688/4681
} Mo. : +91-9769474636
} E-mail : ravi.thakkar-at-iitb.ac.in
} -------------------------------------------------------------------------
}
}
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Larry Stoter
(Working on a Microsoft-free computer)



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From: dave.crofts-at-aut.ac.nz
Date: Sun, 12 Jun 2011 20:33:34 -0500
Subject: [Microscopy] SEM Technician Vacancy - Auckland, New Zealand

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Senior Technician/Technician - SEM
AUT University School of Engineering - SEM (Scanning Electron Microscope) Technician

The School of Engineering is undertaking exciting research in advanced materials and manufacturing processes. The school is currently installing a state-of-the-art SEM facility. This will support microstructure research in advanced materials and metallurgy but also in biosciences. Particular areas of materials research interest are; the solidification related processes of casting and welding, plastic deformation processes of machining, friction stir welding, extrusion, rolling, forging and sheet metal forming, and microelectronic materials and devices.

Our new Hitachi SU-70 SEM system will be entering service after mid-year 2011. We are looking for an appropriately qualified Technician to help establish and support all aspects of our SEM/EBSD facility.

The role will also involve operating materials test and measurement equipment and support of engineering instrumentation and data acquisition systems used in laboratory classes for Engineering degree students and in postgraduate research.

Do you have the skills to operate and manage an SEM facility, and carry out wider technical laboratory duties? If so, then this job may be for you.

Tertiary education is a diverse and rewarding work environment. You will be working with a wide range of students, staff and external clients, varied requirements and unusual teaching and research projects. We are looking for someone motivated and versatile who can make a difference.

Ref: 10941

Closing Date: 22 June 2011

For more information please see: http://careers.aut.ac.nz/jobdetails?ajid=6Y4B7





Dave Crofts
Technical Services Manager | School of Engineering | AUT University |
phone: 09 921 9999 ext 8154 | mobile: 021 339 581 | fax: 09 921 9973 | email: dave.crofts-at-aut.ac.nz




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From: singinggardenersx2-at-live.com
Date: Sun, 12 Jun 2011 21:52:10 -0500
Subject: [Microscopy] Re: About cross section study by SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


During my last semester of studying electron microscopy at
San Joaquin Delta College, I used a Gatan 693 Ilion Advantage
planar polishing system to prepare the transverse of different
hair samples for SEM (canine, feline, human).

The Ilion uses dual ion beams to mill/polish the surface of
a cross section, plus a cold stage for heat sensitive samples.
The porous structures in the cortex and medulla were nicely
preserved with no distortions. The hairs were not embedded but
sandwiched between two 1.7 mm glass cover slips and held in
place with double-stick tape and gel superglue.

If fracturing does not give you the desired results, you
may want to check with Gatan to see if they can either prepare
the sample for you, or point you to someone in your area who
has an Ilion. You can e-mail me off-line if you need a contact
at Gatan.

Gigi Kemalyan
Research Technician
Nogales Lab, HHMI at UC Berkeley
singinggardenersx2-at-live.com




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From: jmircheski-at-us.es
Date: Mon, 13 Jun 2011 05:38:52 -0500
Subject: WG: [Microscopy] The Perfect Loop - is it perfect?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,

Thank you for sharing your experience with me about the Perfect Loop. From
your answers I can summarize that it is better to use it with normal grids,
and not with slotted grids. I use only slot grids (for now), so I guess it
won’t be of much use in the near future. I guess I should have asked this
question before buying it. Nevertheless, now I know that it can help me in
other applications.
Thanks again.

Regards,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es

X-from: Gnägi Helmut [mailto:helmut.gnaegi-at-diatome.ch]
Sent: Saturday, June 11, 2011 3:52 PM
To: 'jmircheski-at-us.es'
Cc: 'sgkcck-at-aol.com'

I had the chance to acquire a Perfect Loop recently, thinking that I can
increase the quality of the collected sections. Unfortunately, it was not
that much helpful (at least in my hands). I lose plenty of good section when
picking them up with the "perfect" loop. The grids that I routinely use are
slot grids coated with Formvar, and it is very difficult to transfer from
the loop to the grid. I bought tabbed grids in order to handle them better,
but then I had to cut the tab, so I had to buy cutter tweezers...
All in all, a tool that didn't deserve the investment. But before I leave it
in some box and forget it for years, I'd like to hear if there is anybody
out there that has used it or still uses it and if there are any special
tricks that I can apply. In the meantime, I will still call it the
"Imperfect Loop".

Regards, and bon voyage to all the people that are out of their offices!

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS)
Hosp.Univ. Virgen del Rocío/CSIC/Univ. de Sevilla y
Dpto. Fisiologia Médica y Biofísica
Universidad de Sevilla
Facultad de Medicina
Avda. Sánchez-Pizjuán 4
41009-Sevilla
 
Phone:+34-954556103
Fax:+34-954551769
e-mail: jmircheski-at-us.es




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From: dsherman-at-purdue.edu
Date: Mon, 13 Jun 2011 19:55:38 -0500
Subject: [Microscopy] Microtoming materials samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

I have a student who wants to microtome some materials samples. The samples
are GaSb and Si wafers. The length and the width are less than 1cm each. The
thickness, which is the most important is less than 0.5mm for GaSb and 1mm
for Si. The structures are on top of the support surfaces (same material).
The GaSb samples are really not very hard.

My concern is that these are students who have never touched a microtome.
They need advise as to type of microtome knife to purchase and any other
hints you have for success with these samples. Will it be necessary to
embed them in resin (which one?) to stabilize the samples in the chuck? Most
likely the resin will peel away from the cut sections but that is not a
problem.

I will teach them using a resin block and glass knives so that they get the
idea but that is a long way from success with their samples. They are hoping
for thicknesses of 100-300nm and will be imaging them with a 300kV FEI Titan
TEM. FIB is not an option with these samples as the ion beam destroys the
detail of interest.

Thanks to all in advance,
Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy






==============================Original Headers==============================
11, 28 -- From dsherman-at-purdue.edu Mon Jun 13 19:55:37 2011
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11, 28 -- Date: Mon, 13 Jun 2011 20:55:30 -0400
11, 28 -- Subject: Microtoming materials samples
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From: swalck-at-southbaytech.com
Date: Mon, 13 Jun 2011 20:52:28 -0500
Subject: [Microscopy] Microtoming materials samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Debby,
It has been done with semiconductors, but the results give you a bunch of
cleaved stuff that doesn't look great.

If they are looking for a relatively straightforward process for making TEM
samples that doesn't require very expensive equipment, I highly recommend
the MicroCleave(TM) technique, also known as the Small Angle Cleavage
Technique. This technique is fairly easy to learn and it will make
absolutely fantastic samples with these types of materials. Here are
several links to application notes on our website. We also have a video on
how to do the technique that we can send out.

http://southbaytech.com/appnotes/62%20The%20Small%20Angle%20Cleavage%20Techn
ique%20An%20Update.pdf

http://southbaytech.com/appnotes/61%20SACT%20Prepared%20MBE%20QWIP%20Structu
re.pdf

http://southbaytech.com/appnotes/59%20EELS%20of%20PLD%20DLC.pdf

http://southbaytech.com/appnotes/55%20GaNSapphire%20Prepared%20by%20SACT.pdf

http://southbaytech.com/appnotes/60%20Pre-Thinning%20for%20FIB%20TEM%20Sampl
e%20Preparation%20Using%20the%20Small%20Angle%20Cleavage%20Technique.pdf

The first of these files have references for the technique.

If you like, have your students give me a call and I will talk to them about
the technique. It is a much better approach for these materials than
microtoming. For about the cost of a knife (or less), they could buy the
equipment and supplies to do it or they could purchase our MicroCleave(TM)
kit.


Disclaimer: South Bay Technology manufactures and sells the MicroCleave(TM)
Kit Model 520.



-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

eMail: SWalck-at-SouthBayTech.com
Phone: 949-492-2600
Toll Free: 1-800-728-2233 (USA)
Fax: 949-492-1499

www.SouthBayTech.com



-----Original Message-----
X-from: dsherman-at-purdue.edu [mailto:dsherman-at-purdue.edu]
Sent: Monday, June 13, 2011 6:04 PM
To: swalck-at-southbaytech.com

Hi all,

I have a student who wants to microtome some materials samples. The samples
are GaSb and Si wafers. The length and the width are less than 1cm each. The
thickness, which is the most important is less than 0.5mm for GaSb and 1mm
for Si. The structures are on top of the support surfaces (same material).
The GaSb samples are really not very hard.

My concern is that these are students who have never touched a microtome.
They need advise as to type of microtome knife to purchase and any other
hints you have for success with these samples. Will it be necessary to
embed them in resin (which one?) to stabilize the samples in the chuck? Most
likely the resin will peel away from the cut sections but that is not a
problem.

I will teach them using a resin block and glass knives so that they get the
idea but that is a long way from success with their samples. They are hoping
for thicknesses of 100-300nm and will be imaging them with a 300kV FEI Titan
TEM. FIB is not an option with these samples as the ion beam destroys the
detail of interest.

Thanks to all in advance,
Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy






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11, 28 -- To: "message to: MSA list" {microscopy-at-microscopy.com}
11, 28 -- Date: Mon, 13 Jun 2011 20:55:30 -0400
11, 28 -- Subject: Microtoming materials samples
11, 28 -- Thread-Topic: Microtoming materials samples
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==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 14 Jun 2011 19:41:53 -0500
Subject: [Microscopy] viaWWW:JEOL 733 Microprobe

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Remember this posting is most likely not from a Subscriber, so when
replying please copy both cvierret-at-mst.edu as well as the MIcroscopy
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Email: cvierret-at-mst.edu Name: Clarissa Wisner

Organization: MS&T

Title-Subject: [Filtered] JEOL 733 Microprobe

Message: We are surplusing our JEOL 733 microprobe. It will sold as it
sets and the buyer will have to arrange shipping. If you want more
information please let me know privately and I will be happy to assist you.

If you know of anyone that might need or want this instrument please
send this along.

Regards,

Clarissa Wisner
SEM Specialist
MS&T

Login Host: 131.151.110.252
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 14 Jun 2011 19:42:56 -0500
Subject: [Microscopy] viaWWW:STEM, LaAlO3. zone axis (001)

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Email: jacques.werckmann-at-ipcms.u-strasbg.fr Name: jacques Werckmann

Organization: UFRJ

Title-Subject: [Filtered] STEM

Message: I study, with a STEM, LaAlO3. zone axis (001). On a Jeol 2100F
(200kV) uncorrected I see the columns of LaO and AlO those by cons on a
Titan corrected (300kV) I do not see the columns of AlO. A microscopist
would he explain this difference
Thanks
Jacques

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 14 Jun 2011 20:07:17 -0500
Subject: [Microscopy] viaWWW:EBSD: sample prep for cordierite Mg-Al-Si-oxides

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Email: parishcm-at-ornl.gov Name: Chad Parish

Organization: ORNL

Title-Subject: [Filtered] EBSD: sample prep for cordierite Mg-Al-Si-oxides

Message: Dear listers,

I'm more of a metallurgist, but I've had a customer ask for EBSD of
Cordierite (Mg2Al4Si5O18). We tried a colloidal silica polish, and as I
had hypothesized, we did not get usable patterns.
I've ordered a few sample preparation articles suggested in the Prior et
al. chapter of the recent EBSD book, but while I'm waiting for them to
arrive, can anyone suggest some references or recipes that might help me
out?

With thanks in advance,
Chad Parish

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 14 Jun 2011 20:07:57 -0500
Subject: [Microscopy] viaWWW:Hardened nanoplast catalyst?

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Email: alice.dohnalkova-at-pnnl.gov Name: Alice Dohnalkova

Organization: PNNL

Title-Subject: [Filtered] Hardened nanoplast catalyst?

Message: Dear list,
Here is a question from my colleague:

An older, yet never opened bottle of nanoplast catalyst have some
hardened, crunchy-looking crystalline material inside. Is there any way
how to reconstitute that?

Thank you,
Alice.

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From: jacques.faerber-at-ipcms.u-strasbg.fr
Date: Wed, 15 Jun 2011 06:51:17 -0500
Subject: [Microscopy] Edwards S150 carbon coating unit

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Hi all

Recently I got a Edwards S150 carbon coating unit (Part Nr E087-23-003),
the unit alone without the vaccum vessel, i.e. the power supply with two
cables fixed to an Al flange, with some sort of holder for the carbon
rods on it.
As it look like, and compared to a picture found on internet (on an
auction web site...), I fear that my head is not complete.

So I'm looking for a picture, or a sketch, of a garanted working head,
and if possible for the a copy of the manual (paper or pdf file).

Does someone on the list have this stuff ?

Many thanks in advance

--
J. Faerber
IPCMS-GSI
(Institut de Physique et Chimie des Matériaux de Strasbourg
Groupe Surface et Interfaces)
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail Jacques.Faerber-at-ipcms.u-strasbg.fr


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From: tbogea-at-interchange.ubc.ca
Date: Wed, 15 Jun 2011 18:48:41 -0500
Subject: [Microscopy] Sorvall MT-5000 microtome

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Hi all!

Our lab recently acquired a used Sorvall MT-5000 microtome. It works well and I would like to get a manual with instructions and other technical info. Does anybody know who bought Sorvall in recent years? I was informed that RMC bought it a while ago and then passed it on to another company... Thanks a lot!!

--
Tami Bogea PhD
Research Associate
Ophthalmology & Visual Sciences
University of British Columbia
2550 Willow St. Vancouver, BC
V5Z 3N9 Canada


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From: chuanz-at-uci.edu
Date: Thu, 16 Jun 2011 01:52:57 -0500
Subject: [Microscopy] TEM - Problem with Acquiring HOLZ lines in 000 spot

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Greetings listers,

I am trying to acquire HOLZ lines in 000 transmitted spot of
CBED patterns for point group determination purpose, but have been
experiencing difficulties in acquiring/recording images of HOLZ lines.
The TEM I am using is Philips EM-20 with Gatan camera. On the phosphor
screen, I was able to see HOLZ lines for higher index zone axis
patterns and they seems to be clearer under 80kV than 200kV. However,
when I inserted the Gatan camera to take pictures, I noticed that the
quality of the diffraction images was too bad - the HOLZ lines were
blurry, and some areas were too bright, making the nearby HOLZ lines
invisible. Does anyone on this list have similar problem before? Any
suggestions on how to record sharp/clear HOLZ images would be much
appreciated!

Best regards,

Chuan Zhang
Graduate Student Researcher,
Dept. of Chemical Engineering and Materials Science,
University of California, Irvine

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From: stefan.diller-at-t-online.de
Date: Thu, 16 Jun 2011 02:16:40 -0500
Subject: [Microscopy] Re: Sorvall MT-5000 microtome

Contents Retrieved from Microscopy Listserver Archives
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Hi Tami,
I am doing service for RMC here in Germany. I will send you a PDF of the service manual offline. I do not have a manual for the
MT-5000 but will include an operation mannual of the MT-7000 which is mostly similar in functions like the 5000...

Best wishes,
Stefan

-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 16.06.11 01:52, schrieb tbogea-at-interchange.ubc.ca:
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} Hi all!
}
} Our lab recently acquired a used Sorvall MT-5000 microtome. It works well and I would like to get a manual with instructions and other technical info. Does anybody know who bought Sorvall in recent years? I was informed that RMC bought it a while ago and then passed it on to another company... Thanks a lot!!
}
} --
} Tami Bogea PhD
} Research Associate
} Ophthalmology& Visual Sciences
} University of British Columbia
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From: john.mitchels-at-gmail.com
Date: Thu, 16 Jun 2011 03:27:31 -0500
Subject: [Microscopy] LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Listers

We have a Jeol 1200 EXII TEM and we were wondering if it is good
enough in which to use a LaB6. The engineers seem to have mix
opinions, as does the great google. I would like comments from anyone
who has or has had a 1200 fitted with a LaB6. If you have, which ones?
The microscope is behaving itself very well, no leaks everything is as
good as it gets given its age. With one fitted do you notice any
significant difference when working at the top end?

Thanks in advance.

John

==============================Original Headers==============================
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4, 30 -- Subject: LaB6 in a Jeol 1200ex2 is it possible?
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From: Nicolas.Stephant-at-univ-nantes.fr
Date: Thu, 16 Jun 2011 05:37:15 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi John

LaB6 filament have to work in a good vacuum. There is some instruments
like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
your vacuum system is very good you may use LaB6 but you must understand
that you will work on an edge. Anyway, you may try without danger for
your instrument and you will see if LaB6 stay save during one year
(good) or one month. Please note that you may use another wehnelt cap
for this kind of filament and you have to change distance beetween
filament tip and wehnelt cap. First eating of this filament must be done
very slowy (about one hour) after almost one night of pumping. Working
with LaB6 is very comfortable because the brigtness is very high and it
may increase significantly top end result.
Regards

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung
john.mitchels-at-gmail.com a écrit :
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} Hi Listers
}
} We have a Jeol 1200 EXII TEM and we were wondering if it is good
} enough in which to use a LaB6. The engineers seem to have mix
} opinions, as does the great google. I would like comments from anyone
} who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} The microscope is behaving itself very well, no leaks everything is as
} good as it gets given its age. With one fitted do you notice any
} significant difference when working at the top end?
}
} Thanks in advance.
}
} John
}
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} 4, 30 -- Subject: LaB6 in a Jeol 1200ex2 is it possible?
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}

--


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8, 25 -- From Nicolas.Stephant-at-univ-nantes.fr Thu Jun 16 05:37:15 2011
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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Thu, 16 Jun 2011 09:56:32 -0500
Subject: [Microscopy] LaB6 in a Jeol 1200ex2

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

my comment on this:

} LaB6 filament have to work in a good vacuum. There is some instruments
} like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
} of the LaB6 TEM work with high vacuum in the gun provided by SIP.

I would not recommend to work with a LaB6 in a (T)EM pumped by a DP or turbo only.
For me, and from our 20yr experience, an IGP or ion getter pump (is SIP the same?) plus a nitrogen-trap is a must.
Other people may comment on this or have other experience, though.
The lifetime of a LaB6 in our TEM (heavily used by bio-people; though, no cryo) , pumped by ODP, plus IGP plus nitrogen trap (all are always on, during day time) is 3 years, up to 3.5 years, in the last 20 years of use, now.
I was told that the lifetime in a turbo-pumped TEM (bio, too) is about .5 to 1 year only, at best. It is not my own experience. Everybody can decide what this means, and what to do.

} if your vacuum system is very good you may use LaB6 but you must understand
} that you will work on an edge.
TRUE
} Anyway, you may try without danger for
} your instrument and you will see if LaB6 stay save during one year
} (good) or one month.
see above ...

} First Heating of this filament must be done
} very slowy (about one hour)
true - but I suggest "slowly" is sufficient; we heat for about 15 min, after a LaB6 change.

} ... after almost one night of pumping.
that depends - very much - on the quality of the pumping system and the status of the pumps and so on. And, how long the gun area was opened, for changing the filament. - Last week, in our machine, we reached the vacuum which "allows" us to start the LaB6 (with all pumps, ODP, IGP, nitrogen trap ON) after 30 to 60 minutes, only.

Kind regards,
Reinhard Rachel

--
Prof. Dr. Reinhard Rachel
Universitaet Regensburg
Centre for EM / Anatomy
Faculty for Biology&Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29



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9, 25 -- Subject: LaB6 in a Jeol 1200ex2
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From: p.ingram-at-cellbio.duke.edu
Date: Thu, 16 Jun 2011 11:51:14 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

John,

We have the same model Jeol 1200 EXII as
you do and it has worked flawlessly for 25 years
with LaB6 filaments. (It has diffusion pumps not
turbo). We get anywhere from 900 to 1500 hrs of
livetime filament life - and that is running at
fairly high emission currents of ~ 20µA. One
caveat: it helps to keep a clean column (vacuum).
We have a custom-built LN2 cold trap that lasts
for up to 48 hrs.
Hope this helps. Feel free to call me
off-line if you need further discussion.

Peter



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--
Peter Ingram
Sr. Physicist
Adj. Professor of Pathology
Duke University Medical Center
PO Box 90319
DURHAM NC 27708-0319

Tel: 919 660-2695
Fax: 919 660-2671
Email: p.ingram-at-cellbio.duke.edu
Skype: ingramp


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From: raristau-at-ims.uconn.edu
Date: Thu, 16 Jun 2011 12:24:31 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

To clarify:

IGP (ion getter pump) and SIP (sputter ion pump) are different names for
same device.

Cheers ;-)
Roger



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From: DOrloff-at-ascb.org
Date: Thu, 16 Jun 2011 12:45:56 -0500
Subject: [Microscopy] The Cell - Finalist in the Labby awards - Please vote to help us

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From: Bryan.Tracy-at-spansion.com
Date: Thu, 16 Jun 2011 15:02:01 -0500
Subject: [Microscopy] Image banding problem resolved on Gatan 794 controller

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Hello everyone,

I just wanted to report that we were able to resolve
the image banding problem on our Gatan 794 controller.

It turns out that there is a 6800uF (30V) capacitor inside the
camera controller that was adding about 2V! of noise to our system.
This noise prevented the acquisition of a Gain Reference Image.

Many thanks to all Gatan folks that helped and especially to
the Univ of Michigan who made a much needed controller available to us.

It turns out that this older vintage controller is out of "official production"
and Gatan can help with repairs on a "best effort" basis, but you can not
just go buy a new one if yours goes down. We also learned that the controller
needs to be matched with your particular camera as it depends on which
generation chip is used inside the controller.

Like so many things, it is was easy to find a solution one you know what you are looking for.
That was certainly our case. When the camera is down, the TEM is down, hence our pointed interest.

A good electrics person with a hot soldering iron and the right capacitor can do the job in an hour.
We took a little longer... please contact me if i can be of help

best regards

bryan tracy
Spansion


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From: William.F.Tivol-at-aero.org
Date: 06/16/2011 12:02 AM
Subject: [Microscopy] TEM - Problem with Acquiring HOLZ lines in

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Dear Chuan Zhang,
I am nowhere near being an expert on this, but, since no one else
has replied, I'll take a shot. Have you tried making the exposure time
smaller, or, equivalently, making the beam dimmer? Since the CCD is more
sensitive than the phosphor, you will need to have fewer electrons/pixel
to get similar visibility. Increasing the camera length would be another
way to accomplish this.
Yours,
Bill



X-from: chuanz-at-uci.edu
To: William.F.Tivol-at-aero.org






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Greetings listers,

I am trying to acquire HOLZ lines in 000 transmitted spot of
CBED patterns for point group determination purpose, but have been
experiencing difficulties in acquiring/recording images of HOLZ lines.
The TEM I am using is Philips EM-20 with Gatan camera. On the phosphor
screen, I was able to see HOLZ lines for higher index zone axis
patterns and they seems to be clearer under 80kV than 200kV. However,
when I inserted the Gatan camera to take pictures, I noticed that the
quality of the diffraction images was too bad - the HOLZ lines were
blurry, and some areas were too bright, making the nearby HOLZ lines
invisible. Does anyone on this list have similar problem before? Any
suggestions on how to record sharp/clear HOLZ images would be much
appreciated!

Best regards,

Chuan Zhang
Graduate Student Researcher,
Dept. of Chemical Engineering and Materials Science,
University of California, Irvine

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From: vitalylazar-at-att.net
Date: Fri, 17 Jun 2011 00:45:34 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

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Use of LaB6 cathode in a vacuum system without an IGP and differential
pumping is possible but impractical. Even if all following rules will be
enforced:

- have LN trap cold before heating filament;
- turn off filament heating before specimen exchange;
- never heat up filament before gun/column vacuum fully recovers after
specimen (or film) exchange,

LaB6 will not likely last for even 1000 hours. Much less at higher
emission setting. Vacuum for LaB6 must be better then 10-6 Torr. Very
difficult to maintain without IGP and differential pumping system. I
consider LaB6 use justified when it lasts at least 2000 hours at
low/medium emission. My average service time experience for LaB6 is
above 3500 hours in a UHV system, with the record approx. 7000 hours and
still going. This particular Denka cathode was installed on Philips
CM-12 in 1997 and still works 14 years later.

Vitaly Feingold
SIA
2773 Heath Lane
Duluth GA 30096
Ph. 770-232-7785
Fax 770-232-1791
www.sia-cam.com
vitaly-at-sia-cam.com

On 6/16/2011 4:28 AM, john.mitchels-at-gmail.com wrote:
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}
} Hi Listers
}
} We have a Jeol 1200 EXII TEM and we were wondering if it is good
} enough in which to use a LaB6. The engineers seem to have mix
} opinions, as does the great google. I would like comments from anyone
} who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} The microscope is behaving itself very well, no leaks everything is as
} good as it gets given its age. With one fitted do you notice any
} significant difference when working at the top end?
}
} Thanks in advance.
}
} John
}
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From: jsb43-at-cam.ac.uk
Date: Fri, 17 Jun 2011 03:44:54 -0500
Subject: [Microscopy] Re: TEM - Problem with Acquiring HOLZ lines in 000 spot

Contents Retrieved from Microscopy Listserver Archives
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Dear Chuan Zhang,

There are four points to consider when taking convergent beam electron
diffraction patterns (CBED) on a digital camera:

1. Correct focus (diffraction lens). If your camera is far from the viewing
screen, then the CBED pattern can appear to be out of focus and the HOLZ
deficiency lines are quickly lost. I have used a Gatan Imaging Filter to
acquire (energy filtered) CBED patterns and always have to fine-tune the
diffraction focus to get a nice sharp (000) CBED disc- the condenser
aperture should appear sharp when the diffraction focus is correct.

2. Sampling rate. If your binning is too high or the camera length is too
small the modulation transfer function (MTF) of the camera may be blurring
the HOLZ deficiency lines too much. Try using single binning and/or a
higher camera length. You may have to try several different areas because
HOLZ deficiency lines tend to narrow with thicker areas.

3. Dynamic range. Because of the highly inhomogeneous distribution of
intensity in a diffraction pattern, it is easy to saturate the camera. I
have found using multiple exposures with a small acquisition time to help
tremendously. For example, I have taken diffraction patterns with } 100,000
counts per pixel on a 16-bit camera (max. 16396) by using the multiple
frames option (DM} Camera} Acquisition Parameters} Acquire} Processing} Frame
Sum (No. of Frames). Ten or twenty frames can make a significant difference
to the visibility of weak features.

4. Spot size (used in conjunction with point 3). I've found that using a
smaller probe with less current leads to better CBED patterns (and using a
larger exposure time). Most samples have a thickness gradient so the CBED
pattern you see are an incoherent mixture of CBED patterns from each point
on the sample that is irradiated, i.e. smaller probes 'average out' the
CBED pattern over a smaller area. However, if your samples are flat (and
clean) this shouldn't make too much difference.

I hope these help.

Yours, Jon Barnard

} Greetings listers,
}
} I am trying to acquire HOLZ lines in 000 transmitted spot of
} CBED patterns for point group determination purpose, but have been
} experiencing difficulties in acquiring/recording images of HOLZ lines.
} The TEM I am using is Philips EM-20 with Gatan camera. On the phosphor
} screen, I was able to see HOLZ lines for higher index zone axis
} patterns and they seems to be clearer under 80kV than 200kV. However,
} when I inserted the Gatan camera to take pictures, I noticed that the
} quality of the diffraction images was too bad - the HOLZ lines were
} blurry, and some areas were too bright, making the nearby HOLZ lines
} invisible. Does anyone on this list have similar problem before? Any
} suggestions on how to record sharp/clear HOLZ images would be much
} appreciated!
}
} Best regards,
}
} Chuan Zhang
} Graduate Student Researcher,
} Dept. of Chemical Engineering and Materials Science,
} University of California, Irvine


==============================Original Headers==============================
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From: jacques.faerber-at-ipcms.u-strasbg.fr
Date: Fri, 17 Jun 2011 03:46:33 -0500
Subject: [Microscopy] Thanks : Edwards S150 carbon coating unit

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Many thanks to all which sent me some documentation and advices. I've
now the manual and some pictures of the head, which seems to be complete
and in working conditions.

Best regards to all !

J. Faerber
IPCMS-GSI
(Institut de Physique et Chimie des Matériaux de Strasbourg
Groupe Surface et Interfaces)
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail Jacques.Faerber-at-ipcms.u-strasbg.fr


Le 15/06/2011 13:57, jacques.faerber-at-ipcms.u-strasbg.fr a écrit :
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} ----------------------------------------------------------------------------
}
} Hi all
}
} Recently I got a Edwards S150 carbon coating unit (Part Nr E087-23-003),
} the unit alone without the vaccum vessel, i.e. the power supply with two
} cables fixed to an Al flange, with some sort of holder for the carbon
} rods on it.
} As it look like, and compared to a picture found on internet (on an
} auction web site...), I fear that my head is not complete.
}
} So I'm looking for a picture, or a sketch, of a garanted working head,
} and if possible for the a copy of the manual (paper or pdf file).
}
} Does someone on the list have this stuff ?
}
} Many thanks in advance
}

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From: Woody.White-at-areva.com
Date: Fri, 17 Jun 2011 08:21:11 -0500
Subject: [Microscopy] unsubscribe

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From: tina-at-pbrc.hawaii.edu
Date: Fri, 17 Jun 2011 16:54:21 -0500
Subject: [Microscopy] Re: Sorvall MT-5000 microtome

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Tami-

I find that I have the entire MT-5000 service manual. It is about 200
pages. I'm not sure I am offering to scan in and PDF the whole thing,
unless I find someone who is bored (I am not). Do you have specific
questions I can look up for you now? If not, I can work on scanning the
thing in over a period of time and then send it to you.

Aloha,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

==============================Original Headers==============================
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From: kraftpiano-at-gmail.com
Date: Fri, 17 Jun 2011 17:45:32 -0500
Subject: [Microscopy] EDS system (Kevex) pinout information.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello, I have a Kevex model 2003 preamplifier that I'm trying to re-purpose into a completely different project I'm working on. Does anybody have a pinout for the external and internal connections, i.e. what pins get what voltages on the five pin power connector, and what parts of the FET do the internal wires go to?

Thanks,

Justin A. Kraft

==============================Original Headers==============================
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From: ruscid2-at-rpi.edu
Date: Mon, 20 Jun 2011 08:32:19 -0500
Subject: [Microscopy] Bruker EDS Troubles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello-

We have a Rontec (now Bruker) Xflash Detector 1000 Series attached to our
Cameca SX-100 electron probe that is no longer detecting X-ray signals
following a series of schedule power outages over the last couple weeks.
The system was completely shut down during each power outage to prevent
any electrical damage.

The Bruker software (Esprit 1.8) appears to communicate with the detector
and we are able to read noise (~ 7 cps/eV) at the low ( { 0.5 keV) energy
range, but higher energy x-rays are not being detected when we analyze a
sample (I've been looking at benitoite for the tests to make sure that we
have a beam).

I'm not aware of anything like a closed aperture or
structure blocking x-rays from reaching the detector window. The cooling
system also appears to be working and the detected temperature is -15 *C.

I have turned the EDS system off overnight and reset it this morning, I've also reset the electronics to the entire probe but nothing seems to be working.

Has anyone else encountered this type of problem?

Any help would/insight would be appreciated!

-Dan

--
Dan Ruscitto, Ph.D.

Laboratory Manager
1W13 Jonsson-Rowland Science Center
Earth& Environmental Sciences
Rensselaer Polytechnic Institute
110 8th St.
Troy NY 12180
Ph: 518-276-2372
Fax: 518-276-2012


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 20 Jun 2011 10:03:16 -0500
Subject: [Microscopy] viaWWW:FEMMS 2011

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Title-Subject: [Filtered] Abstracts and Registration for FEMMS 2011

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-- FEMMS REGISTRATION IS NOW OPEN
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FEMMS INFO THAT YOU NEED TO KNOW

-- BOOK YOUR ROOM ONLINE
-- TRAVEL TO FEMMS2011


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From: nizets2-at-yahoo.com
Date: Tue, 21 Jun 2011 04:03:12 -0500
Subject: [Microscopy] 2 questions. automatic cell counting and BrdU hybridoma

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Dear colleagues,

I have 2 not completely related questions but please allow me to pack them up in
one single email in order to avoid an overflow of junk
out-of-office-you-know-what-I-mean replies.

1. I would be interested in quantifying cells in 96 MTP wells directly, which
means avoiding the so-called "viability" or "proliferation" ELISA assay since
the treatment to the cells probably influences their metabolism (a consideration
which rarely bothers authors of papers related to oxydative stres f.ex.).

One way would be a software-driven automatic cell counting associated with
fluorescence microscopy. We have a Zeiss axiovert 200M so I think we could try a
good software. Now the question is: which software is good?
Optimally it should be free and do the job but we definitely will give
preference to "doing the job" than being free.
I have read a paper about CellProfiler.
I would be interested in any feedback in this domain.
The cells to be counted are very different eucaryotic cells: HepG2, Caco-2,
MCF-10A and other cell lines as well as primary fibroblasts and keratinocytes.

2. I am searching a source for a Brdu Hybridoma. The idea is to develop myself
an ELISA method to quantify the cell proliferation in culture because I would
like to use it routinely. Each company sell their own kit but actually the key
point of these kits is the specific primary antibody. If I can get hold of a
hybridoma producing a primary which can do the job, bingo!
The hybridoma must be available for purchase by a for-profit organisation,
though. It is important to state it because sometimes a product is restricted to
academic research (like HaCat cell f.ex.).

Many thanks in advance

Stephane



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From: stefan.diller-at-t-online.de
Date: Tue, 21 Jun 2011 10:34:04 -0500
Subject: [Microscopy] Remote for Philips SEM 525

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Dear All,
I am in the progress of developing a modular remote interface for the Philips (FEI) SEM 5x5 (types 515, 525, 545).

The remote control will handle:
- zoom function on the magnification range (1x to 8x in 255 steps)
- beamshift x and y in 255 steps
- read and set final lens current in 65536 steps, if a FCA unit is existing in the scope
- gain and blacklevel on SE detector in 1024 steps
- gain and blacklevel on BSE-detector in 1024 steps
- remote control of the 6" motorstage via RS 232
- remote control of customized piezo stages

With an existing CIF unit (Computer interface for the 5x5, made by Philips), you will also be able to remote:
- high voltage settings
- condensor settings
- set and read magnification

Anybody out there who is interested in joining the project or might contribute some thoughts?

Best wishes,
Stefan


--
-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 21 Jun 2011 18:56:57 -0500
Subject: [Microscopy] viaWWW:EM Position in Baltimore MD

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Email: jgoolsby-at-paragonbioservices.com Name: James Goolsby

Organization: Paragon Bioservices

Title-Subject: [Filtered] EM Position in Baltimore MD

Message: An EM position is opening at a Contract Research and
Manufacturing Organization (CRO/CMO) in Baltimore Maryland. Paragon
Bioservices is a rapidly growing company that does pre-clinical R&D and
GMP manufacturing. EM is among our array of analytics that is expanding
and we are looking for a technician to help handle the increased
capacity. Experience with biological TEM sample preparation is a must
(1-2+ years). Additional diverse skills in biological R&D techniques
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From: Wadowska-at-upei.ca
Date: Wed, 22 Jun 2011 09:25:40 -0500
Subject: [Microscopy] TEM H7000

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Hi,
I wonder if you have encountered that problem and might have a solution. We have H7000 and inserting a specimen injector became problematic. After specimen chamber is evacuated I turn the specimen injector and I have a strong resistance as if something is holding the injector locked in place and does not let it go. I have to use force and that causes stage tilt to change. I don’t have this problem when I am taking the specimen out of the microscope.
Do you have any suggestions and how it can be fixed?
Thanks
Dorota



Dorota Wadowska
Manager
Electron Microscopy Laboratory
Atlantic Veterinary College,
UPEI
Charlottetown, PEI Canada
office 902 566 0849




==============================Original Headers==============================
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From: Roy-at-picotech.co.il
Date: Wed, 22 Jun 2011 09:29:42 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
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Hi John.

Like Nicolas said here below, it's all a matter of vacuum.
Because of the well pumped gun (usually turbo or ion pumped), LaB6 SEMs usually have a filament life of way above 1000 hours. If you take the same SEM and exchange the LaB6 filament for a Tungsten one, you'll be able to get way above 1000 hours with the tungsten filament.

So, in theory if your SEM gun has a very good vacuum, you should be getting a very high lifetime from each tungsten filament. If not, you could expect to get good result with the LaB6 filemant, but keep the lifetime of your current tungsten one. Keep in mind that the LaB6 filament is exponentially more expensive than tungsten.

It'd be best to consult with Jeol in any case before you decide to do this.

Regards,
Roy

-----Original Message-----
X-from: Nicolas.Stephant-at-univ-nantes.fr [mailto:Nicolas.Stephant-at-univ-nantes.fr]
Sent: Thursday, June 16, 2011 1:45 PM
To: Roy Golombick

Hi John

LaB6 filament have to work in a good vacuum. There is some instruments
like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
your vacuum system is very good you may use LaB6 but you must understand
that you will work on an edge. Anyway, you may try without danger for
your instrument and you will see if LaB6 stay save during one year
(good) or one month. Please note that you may use another wehnelt cap
for this kind of filament and you have to change distance beetween
filament tip and wehnelt cap. First eating of this filament must be done
very slowy (about one hour) after almost one night of pumping. Working
with LaB6 is very comfortable because the brigtness is very high and it
may increase significantly top end result.
Regards

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung
john.mitchels-at-gmail.com a écrit :
} ----------------------------------------------------------------------------
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} Hi Listers
}
} We have a Jeol 1200 EXII TEM and we were wondering if it is good
} enough in which to use a LaB6. The engineers seem to have mix
} opinions, as does the great google. I would like comments from anyone
} who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} The microscope is behaving itself very well, no leaks everything is as
} good as it gets given its age. With one fitted do you notice any
} significant difference when working at the top end?
}
} Thanks in advance.
}
} John
}
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} 4, 30 -- Subject: LaB6 in a Jeol 1200ex2 is it possible?
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21, 25 -- From Roy-at-picotech.co.il Wed Jun 22 09:29:42 2011
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From: kenconverse-at-qualityimages.biz
Date: Wed, 22 Jun 2011 10:06:24 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Roy,
I beg to differ. I have not seen any significant increase in tungsten
filament life in an ion-pumped gun versus a normal gun in good condition in
an SEM. Poor vacuum will definitely shorten a W filament's life, but a
better vacuum makes very little difference due to the fact that W filaments
run hotter than LaB6 and evaporate faster. The reason poor vacuum
accelerates their demise is due to oxidation on top of evaporation.

No W filament I've ever seen has lasted more than about 300 hours at
operating temperature in an SEM, 10E-7T vacuum notwithstanding. My
observations may not hold for a TEM because TEMs run at lower
temperatures/emission currents and therefore evaporation rates should be
significantly lower.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: Roy-at-picotech.co.il [mailto:Roy-at-picotech.co.il]
Sent: Wednesday, June 22, 2011 10:31 AM
To: kenconverse-at-qualityimages.biz

Hi John.

Like Nicolas said here below, it's all a matter of vacuum.
Because of the well pumped gun (usually turbo or ion pumped), LaB6 SEMs
usually have a filament life of way above 1000 hours. If you take the same
SEM and exchange the LaB6 filament for a Tungsten one, you'll be able to get
way above 1000 hours with the tungsten filament.

So, in theory if your SEM gun has a very good vacuum, you should be getting
a very high lifetime from each tungsten filament. If not, you could expect
to get good result with the LaB6 filemant, but keep the lifetime of your
current tungsten one. Keep in mind that the LaB6 filament is exponentially
more expensive than tungsten.

It'd be best to consult with Jeol in any case before you decide to do this.

Regards,
Roy

-----Original Message-----
X-from: Nicolas.Stephant-at-univ-nantes.fr
[mailto:Nicolas.Stephant-at-univ-nantes.fr]
Sent: Thursday, June 16, 2011 1:45 PM
To: Roy Golombick

Hi John

LaB6 filament have to work in a good vacuum. There is some instruments
like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
your vacuum system is very good you may use LaB6 but you must understand
that you will work on an edge. Anyway, you may try without danger for
your instrument and you will see if LaB6 stay save during one year
(good) or one month. Please note that you may use another wehnelt cap
for this kind of filament and you have to change distance beetween
filament tip and wehnelt cap. First eating of this filament must be done
very slowy (about one hour) after almost one night of pumping. Working
with LaB6 is very comfortable because the brigtness is very high and it
may increase significantly top end result.
Regards

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung
john.mitchels-at-gmail.com a écrit :
}
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} Hi Listers
}
} We have a Jeol 1200 EXII TEM and we were wondering if it is good
} enough in which to use a LaB6. The engineers seem to have mix
} opinions, as does the great google. I would like comments from anyone
} who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} The microscope is behaving itself very well, no leaks everything is as
} good as it gets given its age. With one fitted do you notice any
} significant difference when working at the top end?
}
} Thanks in advance.
}
} John
}
} ==============================Original
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==============================Original Headers==============================
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From: mike.bode-at-resaltatech.com
Date: Wed, 22 Jun 2011 11:24:11 -0500
Subject: [Microscopy] Suggestions for a 3-D Imager

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve,

If you look at the numbers involved in this project, you will see that it
will be very tough to find a solution. Your wafer is 6". That's 730 cm^2 or
7.3x10^12 microns^2. If you have, say, a 7 MPixel camera and you could
perfectly align the images, you would need on the order of 10,000 images
(more if you consider Nyquist, even more if you need overlap). That would
get you a 2D image. 20,000 or 30,000 images would take you about 1 hour if
you could snap 10 pictures a second. However, you probably have to slow this
down for mechanical movement to stabilize when you either move the camera or
the wafer. Obviously you don't want to reduce the resolution by compression,
so you would end up with 30,000 images, each 21 MB (color, 24 bit), or
almost a Terabyte for each wafer. These images would then have to be
montaged. And I am not sure how you would get 3D information from your
images.

The Medical field has been working on something like this for a while now.
There are "slide scanners", which scan a whole medical light microscopy
slide and allow the doctors to see it off-line. However, they typically scan
an area of 1x1". And depending on the resolution, it can take hours.
Nevertheless, you might want to talk to the manufacturers of these systems
to find out if there is anything that can be done for the "wafer scanner"
you have in mind. One of those companies is Olympus (disclaimer: I used to
work for them, but I have no longer any connection to that part of the
business), which you can find here:
http://www.olympusamerica.com/seg_section/product.asp?product=1087&c=9.
There are other companies as well.


---
Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com





-----Original Message-----
X-from: steven.samuelsson-at-sri.com [mailto:steven.samuelsson-at-sri.com]
Sent: Thursday, June 09, 2011 11:27 AM
To: mike.bode-at-resaltatech.com

Dear Listserve,

Am working with an engineer on a proposal that involves predictive
modeling: processes and procedures for silicone wafer etching and
design. I have been included because they wish to monitor etchings via
some kind of imager. Although this is outside of my level of expertise,
the intrigue has brought me into the project. Now I need to discover
our options and hope turn-key systems, at affordable prices, are
available. There are a number of parameters and restrictions and are
listed here.

-object is a 6" silicone wafer; submerged in/out of 5% HF acid with the
imaging taking place remote to the bath. Robot would likely pull out
the wafer and position on an imager stage (or the equivalent) then
return to bath, etc.
-most of the 6" disc will need to be imaged; we realize that fields will
be tiled together
-resolution: ~10um.
-capture rate is a few images each hour; maybe more but no video rate.
-wish to be able to display image sets in 3-D (much like SEMs)
-capital limit at ~$15K

Thanks so much for suggestions.

Steve

--
Steven Samuelsson, PhD
Director
Cell and Molecular Imaging Facility
100-51
SRI International, Inc.
333 Ravenswood Ave
Menlo Park, CA 94061
(650) 859-2980


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From: protrain-at-emcourses.com
Date: Wed, 22 Jun 2011 11:50:32 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Ken

I usually agree with your comments but this time I have to throw in a curved
ball.

I often work with automated analysis SEMs which have a tungsten filament
life of upwards from 2500 hours; admittedly we run at 11 micro amps emission
with the filament well back. The instrument are not used by electron
microscopists so the idea behind this long life being that the service
technician is able to fit a new filament on their six monthly service
visits.

We worked hard to obtain this life and one of the features that we found
that was very important in our development was the vacuum level. Thus we
run with an ion pump on the gun and the difference in filament life is
considerable. This is no criticism of the basic instrument, which exhibits a
gun vacuum level in its standard form the same if not better than its
competitors.

Another area that the gun vacuum level influenced was the high voltage
stability. The instruments need to run for up to 24 hours unattended and it
is most important for the high voltage to remain absolutely stable over that
entire period of time. Double plots of high voltage level and gun vacuum
show that once the gun vacuum settles so does the high voltage. Thus the
operators wait for this stability period prior to starting a sample run;
proven to be the best practice.

As a second point I know LaB6 users who have been forced to use tungsten
whilst waiting for a new source and they have also commented on the
increased filament life.

Maybe I should say that not one of these comments relates to clients in the
United States; must be related to the type of air :-)

Regards

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
Sent: 22 June 2011 16:07
To: protrain-at-emcourses.com

Roy,
I beg to differ. I have not seen any significant increase in tungsten
filament life in an ion-pumped gun versus a normal gun in good condition in
an SEM. Poor vacuum will definitely shorten a W filament's life, but a
better vacuum makes very little difference due to the fact that W filaments
run hotter than LaB6 and evaporate faster. The reason poor vacuum
accelerates their demise is due to oxidation on top of evaporation.

No W filament I've ever seen has lasted more than about 300 hours at
operating temperature in an SEM, 10E-7T vacuum notwithstanding. My
observations may not hold for a TEM because TEMs run at lower
temperatures/emission currents and therefore evaporation rates should be
significantly lower.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: Roy-at-picotech.co.il [mailto:Roy-at-picotech.co.il]
Sent: Wednesday, June 22, 2011 10:31 AM
To: kenconverse-at-qualityimages.biz

Hi John.

Like Nicolas said here below, it's all a matter of vacuum.
Because of the well pumped gun (usually turbo or ion pumped), LaB6 SEMs
usually have a filament life of way above 1000 hours. If you take the same
SEM and exchange the LaB6 filament for a Tungsten one, you'll be able to get
way above 1000 hours with the tungsten filament.

So, in theory if your SEM gun has a very good vacuum, you should be getting
a very high lifetime from each tungsten filament. If not, you could expect
to get good result with the LaB6 filemant, but keep the lifetime of your
current tungsten one. Keep in mind that the LaB6 filament is exponentially
more expensive than tungsten.

It'd be best to consult with Jeol in any case before you decide to do this.

Regards,
Roy

-----Original Message-----
X-from: Nicolas.Stephant-at-univ-nantes.fr
[mailto:Nicolas.Stephant-at-univ-nantes.fr]
Sent: Thursday, June 16, 2011 1:45 PM
To: Roy Golombick

Hi John

LaB6 filament have to work in a good vacuum. There is some instruments
like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
your vacuum system is very good you may use LaB6 but you must understand
that you will work on an edge. Anyway, you may try without danger for
your instrument and you will see if LaB6 stay save during one year
(good) or one month. Please note that you may use another wehnelt cap
for this kind of filament and you have to change distance beetween
filament tip and wehnelt cap. First eating of this filament must be done
very slowy (about one hour) after almost one night of pumping. Working
with LaB6 is very comfortable because the brigtness is very high and it
may increase significantly top end result.
Regards

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung
john.mitchels-at-gmail.com a écrit :
}
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} Hi Listers
}
} We have a Jeol 1200 EXII TEM and we were wondering if it is good
} enough in which to use a LaB6. The engineers seem to have mix
} opinions, as does the great google. I would like comments from anyone
} who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} The microscope is behaving itself very well, no leaks everything is as
} good as it gets given its age. With one fitted do you notice any
} significant difference when working at the top end?
}
} Thanks in advance.
}
} John
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52, 28 -- From: "Steve Chapman" {protrain-at-emcourses.com}
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52, 28 -- Subject: RE: [Microscopy] RE: LaB6 in a Jeol 1200ex2 is it possible?
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From: kenconverse-at-qualityimages.biz
Date: Wed, 22 Jun 2011 12:33:48 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve,
The air, the air... oh, you mean all the hot air? You might have a point
;-)

The 11 uA emission current leads me to think that the lower temperature
enhances the effects of good vacuum. As for a more normal system, I've
found Amrays follow the manual, 40 hrs, ion pump or not, unless the vacuum
is especially poor. JEOLs seem about the same except their typical life is
100-200 hours. I did have one dry pumped ETEC that would run for weeks and
months 24-7 in the 10e-8T range, but it was run slightly undersaturated
because life was more important than stability for the particular
experiment.

Maybe you can shed some light on this thought. I've always wondered how
much effect the physical gun design has on the temperature required for a
particular emission current. Your example seems to indicate the same thing
that TEMs seem to indicate and that is that the lower emission currents, and
consequent lower temperatures result in oxidation being a larger factor than
evaporation on filament life, so better vacuum has a greater effect on lower
temperature filaments. Any thoughts?

Ken

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: Wednesday, June 22, 2011 12:52 PM
To: kenconverse-at-qualityimages.biz

Hi Ken

I usually agree with your comments but this time I have to throw in a curved
ball.

I often work with automated analysis SEMs which have a tungsten filament
life of upwards from 2500 hours; admittedly we run at 11 micro amps emission
with the filament well back. The instrument are not used by electron
microscopists so the idea behind this long life being that the service
technician is able to fit a new filament on their six monthly service
visits.

We worked hard to obtain this life and one of the features that we found
that was very important in our development was the vacuum level. Thus we
run with an ion pump on the gun and the difference in filament life is
considerable. This is no criticism of the basic instrument, which exhibits a
gun vacuum level in its standard form the same if not better than its
competitors.

Another area that the gun vacuum level influenced was the high voltage
stability. The instruments need to run for up to 24 hours unattended and it
is most important for the high voltage to remain absolutely stable over that
entire period of time. Double plots of high voltage level and gun vacuum
show that once the gun vacuum settles so does the high voltage. Thus the
operators wait for this stability period prior to starting a sample run;
proven to be the best practice.

As a second point I know LaB6 users who have been forced to use tungsten
whilst waiting for a new source and they have also commented on the
increased filament life.

Maybe I should say that not one of these comments relates to clients in the
United States; must be related to the type of air :-)

Regards

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]

Sent: 22 June 2011 16:07
To: protrain-at-emcourses.com

Roy,
I beg to differ. I have not seen any significant increase in tungsten
filament life in an ion-pumped gun versus a normal gun in good condition in
an SEM. Poor vacuum will definitely shorten a W filament's life, but a
better vacuum makes very little difference due to the fact that W filaments
run hotter than LaB6 and evaporate faster. The reason poor vacuum
accelerates their demise is due to oxidation on top of evaporation.

No W filament I've ever seen has lasted more than about 300 hours at
operating temperature in an SEM, 10E-7T vacuum notwithstanding. My
observations may not hold for a TEM because TEMs run at lower
temperatures/emission currents and therefore evaporation rates should be
significantly lower.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: Roy-at-picotech.co.il [mailto:Roy-at-picotech.co.il]
Sent: Wednesday, June 22, 2011 10:31 AM
To: kenconverse-at-qualityimages.biz

Hi John.

Like Nicolas said here below, it's all a matter of vacuum.
Because of the well pumped gun (usually turbo or ion pumped), LaB6 SEMs
usually have a filament life of way above 1000 hours. If you take the same
SEM and exchange the LaB6 filament for a Tungsten one, you'll be able to get
way above 1000 hours with the tungsten filament.

So, in theory if your SEM gun has a very good vacuum, you should be getting
a very high lifetime from each tungsten filament. If not, you could expect
to get good result with the LaB6 filemant, but keep the lifetime of your
current tungsten one. Keep in mind that the LaB6 filament is exponentially
more expensive than tungsten.

It'd be best to consult with Jeol in any case before you decide to do this.

Regards,
Roy

-----Original Message-----
X-from: Nicolas.Stephant-at-univ-nantes.fr
[mailto:Nicolas.Stephant-at-univ-nantes.fr]
Sent: Thursday, June 16, 2011 1:45 PM
To: Roy Golombick

Hi John

LaB6 filament have to work in a good vacuum. There is some instruments
like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
your vacuum system is very good you may use LaB6 but you must understand
that you will work on an edge. Anyway, you may try without danger for
your instrument and you will see if LaB6 stay save during one year
(good) or one month. Please note that you may use another wehnelt cap
for this kind of filament and you have to change distance beetween
filament tip and wehnelt cap. First eating of this filament must be done
very slowy (about one hour) after almost one night of pumping. Working
with LaB6 is very comfortable because the brigtness is very high and it
may increase significantly top end result.
Regards

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung
john.mitchels-at-gmail.com a écrit :
}
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} Hi Listers
}
} We have a Jeol 1200 EXII TEM and we were wondering if it is good
} enough in which to use a LaB6. The engineers seem to have mix
} opinions, as does the great google. I would like comments from anyone
} who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} The microscope is behaving itself very well, no leaks everything is as
} good as it gets given its age. With one fitted do you notice any
} significant difference when working at the top end?
}
} Thanks in advance.
}
} John
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66, 28 -- Subject: RE: [Microscopy] LaB6 in a Jeol 1200ex2 is it possible?
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From: protrain-at-emcourses.com
Date: Wed, 22 Jun 2011 14:31:29 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Ken

I seem to have spent most of my life playing (!) with electron guns. How
often I have moved filaments forward or backwards, sharpened tungsten
filaments to obtain LaB6 type performance, lifted up anodes and checked out
different cathode shapes!

To most people in laboratories a gun is what the manufacturer gives you, but
with the good old tungsten hairpin that may be considered to be just a
starting point. Total cathode geometry and the changes that you are able to
make regarding filament life in one direction and performance in the other,
are outside of the norm. Add to this raising the anode to improve
performance and few appreciate how you may transform an instrument.

On tungsten filament temperature I have a great deal to say but as usual
from me it is probably controversial? I rarely fully saturate the gun! I
am a great believer in under saturating. I see no point in throwing away
filament life and with modern stabilities there is usually no point in doing
so. An amazing amount of work may be accomplished and for most SEM analysis
there is no point, it hardly can be said to improve x-ray resolution!

I only saturate when working at the absolute limit at a particular kV and I
challenge anyone to see a visual degradation in any images I record through
using this technique; but only up to 100,000X. The big bonus for most labs
is this technique really does improve tungsten or even LaB6 filament life.

Thus I agree with you with low filament currents it is oxidation that is the
final tungsten filament killer not evaporation! Too hot a filament and it
just evaporates but be more thoughtful and life is extended. We improve the
vacuum and the life is extended even further; but probably at the cost ($)
of an ion pump!

Regards

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com




---Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
Sent: 22 June 2011 18:35
To: protrain-at-emcourses.com

Hi Steve,
The air, the air... oh, you mean all the hot air? You might have a point
;-)

The 11 uA emission current leads me to think that the lower temperature
enhances the effects of good vacuum. As for a more normal system, I've
found Amrays follow the manual, 40 hrs, ion pump or not, unless the vacuum
is especially poor. JEOLs seem about the same except their typical life is
100-200 hours. I did have one dry pumped ETEC that would run for weeks and
months 24-7 in the 10e-8T range, but it was run slightly undersaturated
because life was more important than stability for the particular
experiment.

Maybe you can shed some light on this thought. I've always wondered how
much effect the physical gun design has on the temperature required for a
particular emission current. Your example seems to indicate the same thing
that TEMs seem to indicate and that is that the lower emission currents, and
consequent lower temperatures result in oxidation being a larger factor than
evaporation on filament life, so better vacuum has a greater effect on lower
temperature filaments. Any thoughts?

Ken

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: Wednesday, June 22, 2011 12:52 PM
To: kenconverse-at-qualityimages.biz

Hi Ken

I usually agree with your comments but this time I have to throw in a curved
ball.

I often work with automated analysis SEMs which have a tungsten filament
life of upwards from 2500 hours; admittedly we run at 11 micro amps emission
with the filament well back. The instrument are not used by electron
microscopists so the idea behind this long life being that the service
technician is able to fit a new filament on their six monthly service
visits.

We worked hard to obtain this life and one of the features that we found
that was very important in our development was the vacuum level. Thus we
run with an ion pump on the gun and the difference in filament life is
considerable. This is no criticism of the basic instrument, which exhibits a
gun vacuum level in its standard form the same if not better than its
competitors.

Another area that the gun vacuum level influenced was the high voltage
stability. The instruments need to run for up to 24 hours unattended and it
is most important for the high voltage to remain absolutely stable over that
entire period of time. Double plots of high voltage level and gun vacuum
show that once the gun vacuum settles so does the high voltage. Thus the
operators wait for this stability period prior to starting a sample run;
proven to be the best practice.

As a second point I know LaB6 users who have been forced to use tungsten
whilst waiting for a new source and they have also commented on the
increased filament life.

Maybe I should say that not one of these comments relates to clients in the
United States; must be related to the type of air :-)

Regards

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]

Sent: 22 June 2011 16:07
To: protrain-at-emcourses.com

Roy,
I beg to differ. I have not seen any significant increase in tungsten
filament life in an ion-pumped gun versus a normal gun in good condition in
an SEM. Poor vacuum will definitely shorten a W filament's life, but a
better vacuum makes very little difference due to the fact that W filaments
run hotter than LaB6 and evaporate faster. The reason poor vacuum
accelerates their demise is due to oxidation on top of evaporation.

No W filament I've ever seen has lasted more than about 300 hours at
operating temperature in an SEM, 10E-7T vacuum notwithstanding. My
observations may not hold for a TEM because TEMs run at lower
temperatures/emission currents and therefore evaporation rates should be
significantly lower.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: Roy-at-picotech.co.il [mailto:Roy-at-picotech.co.il]
Sent: Wednesday, June 22, 2011 10:31 AM
To: kenconverse-at-qualityimages.biz

Hi John.

Like Nicolas said here below, it's all a matter of vacuum.
Because of the well pumped gun (usually turbo or ion pumped), LaB6 SEMs
usually have a filament life of way above 1000 hours. If you take the same
SEM and exchange the LaB6 filament for a Tungsten one, you'll be able to get
way above 1000 hours with the tungsten filament.

So, in theory if your SEM gun has a very good vacuum, you should be getting
a very high lifetime from each tungsten filament. If not, you could expect
to get good result with the LaB6 filemant, but keep the lifetime of your
current tungsten one. Keep in mind that the LaB6 filament is exponentially
more expensive than tungsten.

It'd be best to consult with Jeol in any case before you decide to do this.

Regards,
Roy

-----Original Message-----
X-from: Nicolas.Stephant-at-univ-nantes.fr
[mailto:Nicolas.Stephant-at-univ-nantes.fr]
Sent: Thursday, June 16, 2011 1:45 PM
To: Roy Golombick

Hi John

LaB6 filament have to work in a good vacuum. There is some instruments
like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
your vacuum system is very good you may use LaB6 but you must understand
that you will work on an edge. Anyway, you may try without danger for
your instrument and you will see if LaB6 stay save during one year
(good) or one month. Please note that you may use another wehnelt cap
for this kind of filament and you have to change distance beetween
filament tip and wehnelt cap. First eating of this filament must be done
very slowy (about one hour) after almost one night of pumping. Working
with LaB6 is very comfortable because the brigtness is very high and it
may increase significantly top end result.
Regards

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung
john.mitchels-at-gmail.com a écrit :
}
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} Hi Listers
}
} We have a Jeol 1200 EXII TEM and we were wondering if it is good
} enough in which to use a LaB6. The engineers seem to have mix
} opinions, as does the great google. I would like comments from anyone
} who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} The microscope is behaving itself very well, no leaks everything is as
} good as it gets given its age. With one fitted do you notice any
} significant difference when working at the top end?
}
} Thanks in advance.
}
} John
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From: erin.tranfield-at-embl.de
Date: Wed, 22 Jun 2011 14:37:55 -0500
Subject: [Microscopy] TEM - Lifetime of 1% Tannic Acid Solution?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Everyone,

I have a fresh 1% tannic acid in acetone solution and I am wondering if I can store it for future experiments.

My questions are:
1. What is the lifetime of a tannic acid solution (days, months or even years)?
2. How is it best stored? (Temperature?, in glass?)
3. Is there an optimal storage concentration (1%, 5%, 20%)?

If anyone has any insight about this, I would appreciate it very much!
Thank-you kindly
Erin
________________________________

Erin Tranfield PhD
Cell Biology and Biophysics Unit
European Molecular Biology Laboratory
Meyerhofstrasse 1
69117 Heidelberg, Germany
T +49 6221 3878620





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From: jfmjfm-at-umich.edu
Date: Wed, 22 Jun 2011 15:28:53 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

OK. The key issue is: "is the vacuum good enough?"
If you have an ion pump on the gun and it is operating, then chances are that the vacuum IS good enough.
So, all that remains is to buy a filament and try it. JEOL will tell you the best operating conditions for any given make of LaB6 filament.
Cost in the US would be up to about $1000, Euros, probably 800 or so.
If you can afford that much of a gamble then I would just go for it.
You might be able to get longish life out of a tungsten filament, but the LaB6 should be about three orders of magnitude brighter (if my rapidly failing memory serves me correctly). Careful bias and heating should allow 1800 hours plus of use. I choose this figure as it was one of the better numbers we got out of a filament. Remember, we operate in a multi-user, multi-skill-level environment (three to five dozen users) and so I think that is quite remarkable.

PS, We like Denka filaments, we don't have an interest in them but they have pretty much given us good service over the years.



On Jun 22, 2011, at 3:42 PM, protrain-at-emcourses.com wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
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} ----------------------------------------------------------------------------
}
} Hi Ken
}
} I seem to have spent most of my life playing (!) with electron guns. How
} often I have moved filaments forward or backwards, sharpened tungsten
} filaments to obtain LaB6 type performance, lifted up anodes and checked out
} different cathode shapes!
}
} To most people in laboratories a gun is what the manufacturer gives you, but
} with the good old tungsten hairpin that may be considered to be just a
} starting point. Total cathode geometry and the changes that you are able to
} make regarding filament life in one direction and performance in the other,
} are outside of the norm. Add to this raising the anode to improve
} performance and few appreciate how you may transform an instrument.
}
} On tungsten filament temperature I have a great deal to say but as usual
} from me it is probably controversial? I rarely fully saturate the gun! I
} am a great believer in under saturating. I see no point in throwing away
} filament life and with modern stabilities there is usually no point in doing
} so. An amazing amount of work may be accomplished and for most SEM analysis
} there is no point, it hardly can be said to improve x-ray resolution!
}
} I only saturate when working at the absolute limit at a particular kV and I
} challenge anyone to see a visual degradation in any images I record through
} using this technique; but only up to 100,000X. The big bonus for most labs
} is this technique really does improve tungsten or even LaB6 filament life.
}
} Thus I agree with you with low filament currents it is oxidation that is the
} final tungsten filament killer not evaporation! Too hot a filament and it
} just evaporates but be more thoughtful and life is extended. We improve the
} vacuum and the life is extended even further; but probably at the cost ($)
} of an ion pump!
}
} Regards
}
} Steve
}
} Steve Chapman FRMS
} Senior Consultant Protrain
} For consultancy and training in electron microscopy world wide
} Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
} www.emcourses.com
}
}
}
}
} ---Original Message-----
} X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
} Sent: 22 June 2011 18:35
} To: protrain-at-emcourses.com
} Subject: [Microscopy] RE: LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Steve,
} The air, the air... oh, you mean all the hot air? You might have a point
} ;-)
}
} The 11 uA emission current leads me to think that the lower temperature
} enhances the effects of good vacuum. As for a more normal system, I've
} found Amrays follow the manual, 40 hrs, ion pump or not, unless the vacuum
} is especially poor. JEOLs seem about the same except their typical life is
} 100-200 hours. I did have one dry pumped ETEC that would run for weeks and
} months 24-7 in the 10e-8T range, but it was run slightly undersaturated
} because life was more important than stability for the particular
} experiment.
}
} Maybe you can shed some light on this thought. I've always wondered how
} much effect the physical gun design has on the temperature required for a
} particular emission current. Your example seems to indicate the same thing
} that TEMs seem to indicate and that is that the lower emission currents, and
} consequent lower temperatures result in oxidation being a larger factor than
} evaporation on filament life, so better vacuum has a greater effect on lower
} temperature filaments. Any thoughts?
}
} Ken
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
} Sent: Wednesday, June 22, 2011 12:52 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Ken
}
} I usually agree with your comments but this time I have to throw in a curved
} ball.
}
} I often work with automated analysis SEMs which have a tungsten filament
} life of upwards from 2500 hours; admittedly we run at 11 micro amps emission
} with the filament well back. The instrument are not used by electron
} microscopists so the idea behind this long life being that the service
} technician is able to fit a new filament on their six monthly service
} visits.
}
} We worked hard to obtain this life and one of the features that we found
} that was very important in our development was the vacuum level. Thus we
} run with an ion pump on the gun and the difference in filament life is
} considerable. This is no criticism of the basic instrument, which exhibits a
} gun vacuum level in its standard form the same if not better than its
} competitors.
}
} Another area that the gun vacuum level influenced was the high voltage
} stability. The instruments need to run for up to 24 hours unattended and it
} is most important for the high voltage to remain absolutely stable over that
} entire period of time. Double plots of high voltage level and gun vacuum
} show that once the gun vacuum settles so does the high voltage. Thus the
} operators wait for this stability period prior to starting a sample run;
} proven to be the best practice.
}
} As a second point I know LaB6 users who have been forced to use tungsten
} whilst waiting for a new source and they have also commented on the
} increased filament life.
}
} Maybe I should say that not one of these comments relates to clients in the
} United States; must be related to the type of air :-)
}
} Regards
}
} Steve
}
} Steve Chapman FRMS
} Senior Consultant Protrain
} For consultancy and training in electron microscopy world wide
} Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
} www.emcourses.com
}
}
}
} -----Original Message-----
} X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
}
} Sent: 22 June 2011 16:07
} To: protrain-at-emcourses.com
} Subject: [Microscopy] RE: LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Roy,
} I beg to differ. I have not seen any significant increase in tungsten
} filament life in an ion-pumped gun versus a normal gun in good condition in
} an SEM. Poor vacuum will definitely shorten a W filament's life, but a
} better vacuum makes very little difference due to the fact that W filaments
} run hotter than LaB6 and evaporate faster. The reason poor vacuum
} accelerates their demise is due to oxidation on top of evaporation.
}
} No W filament I've ever seen has lasted more than about 300 hours at
} operating temperature in an SEM, 10E-7T vacuum notwithstanding. My
} observations may not hold for a TEM because TEMs run at lower
} temperatures/emission currents and therefore evaporation rates should be
} significantly lower.
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: Roy-at-picotech.co.il [mailto:Roy-at-picotech.co.il]
} Sent: Wednesday, June 22, 2011 10:31 AM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi John.
}
} Like Nicolas said here below, it's all a matter of vacuum.
} Because of the well pumped gun (usually turbo or ion pumped), LaB6 SEMs
} usually have a filament life of way above 1000 hours. If you take the same
} SEM and exchange the LaB6 filament for a Tungsten one, you'll be able to get
} way above 1000 hours with the tungsten filament.
}
} So, in theory if your SEM gun has a very good vacuum, you should be getting
} a very high lifetime from each tungsten filament. If not, you could expect
} to get good result with the LaB6 filemant, but keep the lifetime of your
} current tungsten one. Keep in mind that the LaB6 filament is exponentially
} more expensive than tungsten.
}
} It'd be best to consult with Jeol in any case before you decide to do this.
}
} Regards,
} Roy
}
} -----Original Message-----
} X-from: Nicolas.Stephant-at-univ-nantes.fr
} [mailto:Nicolas.Stephant-at-univ-nantes.fr]
} Sent: Thursday, June 16, 2011 1:45 PM
} To: Roy Golombick
} Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi John
}
} LaB6 filament have to work in a good vacuum. There is some instruments
} like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
} of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
} your vacuum system is very good you may use LaB6 but you must understand
} that you will work on an edge. Anyway, you may try without danger for
} your instrument and you will see if LaB6 stay save during one year
} (good) or one month. Please note that you may use another wehnelt cap
} for this kind of filament and you have to change distance beetween
} filament tip and wehnelt cap. First eating of this filament must be done
} very slowy (about one hour) after almost one night of pumping. Working
} with LaB6 is very comfortable because the brigtness is very high and it
} may increase significantly top end result.
} Regards
}
} Nicolas STEPHANT
}
} Université de Nantes
} Institut Jean Rouxel
} Service de microscopie électronique à balayage et microanalyse
} 2 rue de la Houssinière
} BP 92208
} 44322 Nantes cédex 3
}
} Tél : 02 40 37 64 26
} Mél : nicolas.stephant-at-univ-nantes.fr
} Web : http://www.univ-nantes.fr/smebm
}
} "Le monde n'existe que pour autant que nous sommes capables d'en
} produire une image"
}
} C.G Jung
} john.mitchels-at-gmail.com a écrit :
} }
} ----------------------------------------------------------------------------
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} }
} } Hi Listers
} }
} } We have a Jeol 1200 EXII TEM and we were wondering if it is good
} } enough in which to use a LaB6. The engineers seem to have mix
} } opinions, as does the great google. I would like comments from anyone
} } who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} } The microscope is behaving itself very well, no leaks everything is as
} } good as it gets given its age. With one fitted do you notice any
} } significant difference when working at the top end?
} }
} } Thanks in advance.
} }
} } John
} }
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} 8, 25 -- From Nicolas.Stephant-at-univ-nantes.fr Thu Jun 16 05:37:15 2011
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} 21, 25 -- From Roy-at-picotech.co.il Wed Jun 22 09:29:42 2011
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--
John Mansfield PhD Cphys MInstP
2010 Microscopy & Microanalysis Program Chair
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
Phone: (734) 936-3352 FAX (734) 763-2282
Cell. Phone: (734) 834-3913
(Leaving a phone message at 936-3352 is preferable to 834-3913)
Email: jfmjfm-at-engin.umich.edu
URL: http://emalwww.engin.umich.edu/people/jfmjfm/jfmjfm.html
Location: N 42 ° 17' 38.3" (42 ° 17.6391' ) W 83 ° 42' 38.6" (-83 ° 42.6439')
AIM: thejfmjfm
Yahoo: thejfmjfm
Skype: thejfmjfm

Home address:
4304 Spring Lake Boulevard
Ann Arbor MI 48108-9657
Phone (734) 994-3096
Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83 ° 45.7980')

Please note: Electronic Mail is not secure, but should be read several times every day, and should definitely be used for urgent or sensitive issues.



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11, 20 -- From jfmjfm-at-umich.edu Wed Jun 22 15:28:53 2011
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From: jquinn-at-ms.cc.sunysb.edu
Date: Wed, 22 Jun 2011 16:38:23 -0500
Subject: [Microscopy] Suggestions for a 3-D Imager

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Steve, Mike, MSA folks, and all of OoO-ers

Micro/macro-gigapan for the image-tiling and stepping:
http://www.gigamacro.com/gigapixel_macro_photography_technology.php

http://smallworld.gigapan.org/

Alternatively, since the wafer is "flat" you could invert
an EpsonV750 and move the wafer to within 1mm of the
scanner's surface. 2400dpi (true) is just about 10micron/pixel.
However, the image will be 600MBytes. I do this for
kind of "macro" imaging all the time.

regards,

JQuinn

PS: "silicon wafer", not "silicone wafer".


At 12:33 PM 6/22/2011, you wrote:



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From: dsherman-at-purdue.edu
Date: Wed, 22 Jun 2011 17:13:58 -0500
Subject: [Microscopy] Tem EDX

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

We have a SDD EDX system on our TEM and routinely get Co, Cu, and Fe in the
spectra. I understood that these elements are from the polepiece and other
components in the sample area.

When a student submitted a manuscript with these elements in the spectrum,
along with the other elements of interest (IN, Sb), a reviewer said that
the TEM instruments are strictly restricted from using the magnetic
impurities/parts, so there must be other sources for iron.

Comments? How would you respond to this reviewer.

Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy






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11, 28 -- From: "Sherman, Debra M" {dsherman-at-purdue.edu}
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11, 28 -- Date: Wed, 22 Jun 2011 18:13:53 -0400
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From: colijn.1-at-osu.edu
Date: Wed, 22 Jun 2011 17:51:26 -0500
Subject: [Microscopy] Re: Tem EDX

Contents Retrieved from Microscopy Listserver Archives
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Hi Debby,

The pole-pieces are necessarily a magnetic alloy to "focus" the magnetic
flux lines. The usual composition is Permalloy or a (Co, Fe) alloy.
The Cu is likely from the TEM grid. You can even check the Wikipedia
entry on "electron microscopy" which talks about pole pieces being made
of magnetic material. Sounds like the reviewer needs his head smacked!
(in my not so humble opinion!)

from Williams & Carter section 6.3

{...snip...}
To make a magnetic electron lens we need two parts.
Both are drawn schematically in cross section in
Figure 6.6. First there is a cylindrically symmetrical core
of soft magnetic material such as soft iron, with a hole
drilled through it. We call this soft iron a polepiece and
the hole is called the bore of the polepiece. (Soft refers to
the magnetic not the mechanical behavior.)
{...snip...}

Cheers,
Henk


At 6/22/2011 6:14 PM, dsherman-at-purdue.edu wrote:
}
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} Hi all,
}
} We have a SDD EDX system on our TEM and routinely get Co, Cu, and Fe in the
} spectra. I understood that these elements are from the polepiece and other
} components in the sample area.
}
} When a student submitted a manuscript with these elements in the spectrum,
} along with the other elements of interest (IN, Sb), a reviewer said that
} the TEM instruments are strictly restricted from using the magnetic
} impurities/parts, so there must be other sources for iron.
}
} Comments? How would you respond to this reviewer.
}
} Debby
}
} ---
} Debby Sherman, Director Phone: 765-494-6666
} Life Science Microscopy Facility FAX: 765-494-5896
} Purdue University E-mail: dsherman-at-purdue.edu
} S-052 Whistler Building
} 170 S. University Street
} West Lafayette, IN 47907
} http://www.ag.purdue.edu/facilities/microscopy
}
}
}
}
}
}
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--
Hendrik O. Colijn
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

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From: mike.bode-at-resaltatech.com
Date: Wed, 22 Jun 2011 18:07:26 -0500
Subject: [Microscopy] Tem EDX

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Debby,

I think what he or she is saying is that the instruments don't have iron or
other magnetic materials close to the beam to avoid magnetic distortions, so
there shouldn't be any Iron detected. But aren't the pole pieces made out of
magnetic materials which could include iron? You could simply show that you
get an Fe peak when you put in just the holder, or perhaps the holder and an
empty grid. I don't think you would have to show that in the publication
itself.

mike
---
Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com






-----Original Message-----
X-from: dsherman-at-purdue.edu [mailto:dsherman-at-purdue.edu]
Sent: Wednesday, June 22, 2011 4:20 PM
To: mike.bode-at-resaltatech.com

Hi all,

We have a SDD EDX system on our TEM and routinely get Co, Cu, and Fe in the
spectra. I understood that these elements are from the polepiece and other
components in the sample area.

When a student submitted a manuscript with these elements in the spectrum,
along with the other elements of interest (IN, Sb), a reviewer said that
the TEM instruments are strictly restricted from using the magnetic
impurities/parts, so there must be other sources for iron.

Comments? How would you respond to this reviewer.

Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy






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11, 28 -- Date: Wed, 22 Jun 2011 18:13:53 -0400
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From: kenconverse-at-qualityimages.biz
Date: Wed, 22 Jun 2011 18:27:12 -0500
Subject: [Microscopy] Tem EDX

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Debbie,
I'm with Henk. The reviewer needs a smack. Very few EMs use anything other
than electromagnetic lenses made of iron (often a 1001 or 1002 very mild
steel to reduce hysterisis). The lens is going to be very close to the
sample. Often SEM lenses are plated with Rh and if the EDX detector is
pulled too far out, you get Rh in your spectrum. I'm not sure if you have
any motion capability with the TEM. Is the collimator properly mounted?
That can often make a big difference in what gets picked up from the
microscope itself.

The reviewer's reasoning is wrong. Period.

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: mike.bode-at-resaltatech.com [mailto:mike.bode-at-resaltatech.com]
Sent: Wednesday, June 22, 2011 7:09 PM
To: kenconverse-at-qualityimages.biz

Hi Debby,

I think what he or she is saying is that the instruments don't have iron or
other magnetic materials close to the beam to avoid magnetic distortions, so
there shouldn't be any Iron detected. But aren't the pole pieces made out of
magnetic materials which could include iron? You could simply show that you
get an Fe peak when you put in just the holder, or perhaps the holder and an
empty grid. I don't think you would have to show that in the publication
itself.

mike
---
Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com






-----Original Message-----
X-from: dsherman-at-purdue.edu [mailto:dsherman-at-purdue.edu]
Sent: Wednesday, June 22, 2011 4:20 PM
To: mike.bode-at-resaltatech.com

Hi all,

We have a SDD EDX system on our TEM and routinely get Co, Cu, and Fe in the
spectra. I understood that these elements are from the polepiece and other
components in the sample area.

When a student submitted a manuscript with these elements in the spectrum,
along with the other elements of interest (IN, Sb), a reviewer said that
the TEM instruments are strictly restricted from using the magnetic
impurities/parts, so there must be other sources for iron.

Comments? How would you respond to this reviewer.

Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy






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From: Karsten.Goemann-at-utas.edu.au
Date: Wed, 22 Jun 2011 18:49:24 -0500
Subject: [Microscopy] RE: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ken, Steve,

we're running our tungsten source SEM (no IGP,
whole instrument vented and TP off during sample
exchange...) in two modes:

Automated mineralogy, EDS mapping...: 40uA
emission, fila tip way back in Wehnelt, not
undersaturated as that seems to help beam
stability, wait 1 hour for stabilisation after
pump down and HV on. Filament heat setting at
around 1.5-1.6V (not sure what temperature that
corresponds to) after initial burn in. Filament
lifetimes are between 700h and over 2000h, but
usually over 1000h. Penning gauge usually reads
mid E-4 Pa values during runs, ultimate pressure
of the system around 5E-5 Pa.

Other SEM operation (biol. imaging, CL...): 100uA
emission, fila tip much closer to grid cap,
slightly undersaturated. Fila usually breaks at
around 2 V after 40-150h, usually somewhere
around 100h.

We have a second Wehnelt prepared in a desiccator
for the other mode so we swap them, usually every
1-2 weeks. Fila lifetimes appear to be longer if
one Wehnelt is in the SEM all the time, i.e. not
swapped and stored externally.

Does this add some useful "data" to the oxidation
/ vac. quality vs. evaporation considerations?
Cheers,

Karsten

--
Dr Karsten Goemann
Research Fellow, Electron Microscopy & X-ray Microanalysis
Central Science Laboratory, University of Tasmania
Private Bag 74, Hobart TAS 7001, Australia
Tel.: +61 (0) 3 6226 2146 (office & labs)
Mobile: +61 (0) 407 101 990
Fax: +61 (0) 3 6226 2494 (general CSL)
E-mail: Karsten.Goemann-at-utas.edu.au
http://www.utas.edu.au/csl


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From: dsherman-at-purdue.edu
Date: Wed, 22 Jun 2011 19:30:48 -0500
Subject: [Microscopy] Re: Tem EDX

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thanks to all for the quick response. Consensus is that the reviewer is
incorrect as many scopes do see Fe and Co in EDX spectra from the polepiece.
The amount may depend on the type of microscope, detector, etc but
apparently many instruments show this.

I didn't mention this in my first E-mail but I regularly take a background
spectrum and they invariably show Fe and Co in our instrument. It is
difficult to do a background subtraction and remove all of it. Presumably
this is because the sample does deflect many more electrons than just the
support film resulting in more X-ray production from other areas within the
objective lens.

We also have a cryo blade that is made of copper and also the connection
from the external nitrogen dewar to the decontaminator is a copper braid.
Thus, even when using a low background (Beryllium) holder and nickel grid we
often get a small amount of Cu. This may not show up with a SiLi detector
but we get so many counts with the SDD that this may translate into higher
background peaks for some of these elements.

Debby


On 6/22/11 6:15 PM, "Debby Sherman" {dsherman-at-purdue.edu} wrote:

}
}
}
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} Hi all,
}
} We have a SDD EDX system on our TEM and routinely get Co, Cu, and Fe in the
} spectra. I understood that these elements are from the polepiece and other
} components in the sample area.
}
} When a student submitted a manuscript with these elements in the spectrum,
} along with the other elements of interest (IN, Sb), a reviewer said that
} the TEM instruments are strictly restricted from using the magnetic
} impurities/parts, so there must be other sources for iron.
}
} Comments? How would you respond to this reviewer.
}
} Debby
}
} ---
} Debby Sherman, Director Phone: 765-494-6666
} Life Science Microscopy Facility FAX: 765-494-5896
} Purdue University E-mail: dsherman-at-purdue.edu
} S-052 Whistler Building
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} http://www.ag.purdue.edu/facilities/microscopy
}
}
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From: protrain-at-emcourses.com
Date: Thu, 23 Jun 2011 03:32:12 -0500
Subject: [Microscopy] RE: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Karsten

Some time ago I wrote about stability and the time taken to achieve heat
gained in the high voltage generator to equal heat lost.

For a typical SEM from first switching on the high voltage through to
stability takes about 45 minutes. With a TEM an oil filled tank at 100kV
takes about 2 to 3 hours but a gas filled tank is usually less than an hour.
If you are changing specimens within a short time period the time to
stability should be reduced. Are you sure your instability is due to being
off saturation as from my experience with a modern machine that is very
rare?

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com




-----Original Message-----
X-from: Karsten.Goemann-at-utas.edu.au [mailto:Karsten.Goemann-at-utas.edu.au]
Sent: 23 June 2011 00:50
To: protrain-at-emcourses.com

Ken, Steve,

we're running our tungsten source SEM (no IGP,
whole instrument vented and TP off during sample
exchange...) in two modes:

Automated mineralogy, EDS mapping...: 40uA
emission, fila tip way back in Wehnelt, not
undersaturated as that seems to help beam
stability, wait 1 hour for stabilisation after
pump down and HV on. Filament heat setting at
around 1.5-1.6V (not sure what temperature that
corresponds to) after initial burn in. Filament
lifetimes are between 700h and over 2000h, but
usually over 1000h. Penning gauge usually reads
mid E-4 Pa values during runs, ultimate pressure
of the system around 5E-5 Pa.

Other SEM operation (biol. imaging, CL...): 100uA
emission, fila tip much closer to grid cap,
slightly undersaturated. Fila usually breaks at
around 2 V after 40-150h, usually somewhere
around 100h.

We have a second Wehnelt prepared in a desiccator
for the other mode so we swap them, usually every
1-2 weeks. Fila lifetimes appear to be longer if
one Wehnelt is in the SEM all the time, i.e. not
swapped and stored externally.

Does this add some useful "data" to the oxidation
/ vac. quality vs. evaporation considerations?
Cheers,

Karsten

--
Dr Karsten Goemann
Research Fellow, Electron Microscopy & X-ray Microanalysis
Central Science Laboratory, University of Tasmania
Private Bag 74, Hobart TAS 7001, Australia
Tel.: +61 (0) 3 6226 2146 (office & labs)
Mobile: +61 (0) 407 101 990
Fax: +61 (0) 3 6226 2494 (general CSL)
E-mail: Karsten.Goemann-at-utas.edu.au
http://www.utas.edu.au/csl


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From: Nicolas.Stephant-at-univ-nantes.fr
Date: Thu, 23 Jun 2011 04:45:00 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi listeners

In fact a tungstene filament can get a very long life if it is not
saturate. This way is usable in SEM but not so much in TEM because light
density of the spot may become irregular. Temperature of a tungsten
filament increase quickly even when a few current eating is added that
is the reason why it's very important for lifetime to adjust saturation
just on the edge. There is many lifetime value of a tungstene filament
almost one for each microscope and for each people who adjust saturation
current. Vacuum is more important otherwise it cannot work well, then
adjustment of current is also very important for lifetime. Working
unsaturate can be done if the job is not precise (small magnification,
big spot size, no low voltage, etc..) but may cause problems if you need
resolution or very stable current. In our SEM, tungstene filament is
changed every 3 month; we work 5 days per week with a saturate filament
and under 4.10-6 mBar.
Regards.

--
Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung

protrain-at-emcourses.com a écrit :
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} Hi Ken
}
} I usually agree with your comments but this time I have to throw in a curved
} ball.
}
} I often work with automated analysis SEMs which have a tungsten filament
} life of upwards from 2500 hours; admittedly we run at 11 micro amps emission
} with the filament well back. The instrument are not used by electron
} microscopists so the idea behind this long life being that the service
} technician is able to fit a new filament on their six monthly service
} visits.
}
} We worked hard to obtain this life and one of the features that we found
} that was very important in our development was the vacuum level. Thus we
} run with an ion pump on the gun and the difference in filament life is
} considerable. This is no criticism of the basic instrument, which exhibits a
} gun vacuum level in its standard form the same if not better than its
} competitors.
}
} Another area that the gun vacuum level influenced was the high voltage
} stability. The instruments need to run for up to 24 hours unattended and it
} is most important for the high voltage to remain absolutely stable over that
} entire period of time. Double plots of high voltage level and gun vacuum
} show that once the gun vacuum settles so does the high voltage. Thus the
} operators wait for this stability period prior to starting a sample run;
} proven to be the best practice.
}
} As a second point I know LaB6 users who have been forced to use tungsten
} whilst waiting for a new source and they have also commented on the
} increased filament life.
}
} Maybe I should say that not one of these comments relates to clients in the
} United States; must be related to the type of air :-)
}
} Regards
}
} Steve
}
} Steve Chapman FRMS
} Senior Consultant Protrain
} For consultancy and training in electron microscopy world wide
} Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
} www.emcourses.com
}
}
}
} -----Original Message-----
} X-from: kenconverse-at-qualityimages.biz [mailto:kenconverse-at-qualityimages.biz]
} Sent: 22 June 2011 16:07
} To: protrain-at-emcourses.com
} Subject: [Microscopy] RE: LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} Roy,
} I beg to differ. I have not seen any significant increase in tungsten
} filament life in an ion-pumped gun versus a normal gun in good condition in
} an SEM. Poor vacuum will definitely shorten a W filament's life, but a
} better vacuum makes very little difference due to the fact that W filaments
} run hotter than LaB6 and evaporate faster. The reason poor vacuum
} accelerates their demise is due to oxidation on top of evaporation.
}
} No W filament I've ever seen has lasted more than about 300 hours at
} operating temperature in an SEM, 10E-7T vacuum notwithstanding. My
} observations may not hold for a TEM because TEMs run at lower
} temperatures/emission currents and therefore evaporation rates should be
} significantly lower.
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: Roy-at-picotech.co.il [mailto:Roy-at-picotech.co.il]
} Sent: Wednesday, June 22, 2011 10:31 AM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi John.
}
} Like Nicolas said here below, it's all a matter of vacuum.
} Because of the well pumped gun (usually turbo or ion pumped), LaB6 SEMs
} usually have a filament life of way above 1000 hours. If you take the same
} SEM and exchange the LaB6 filament for a Tungsten one, you'll be able to get
} way above 1000 hours with the tungsten filament.
}
} So, in theory if your SEM gun has a very good vacuum, you should be getting
} a very high lifetime from each tungsten filament. If not, you could expect
} to get good result with the LaB6 filemant, but keep the lifetime of your
} current tungsten one. Keep in mind that the LaB6 filament is exponentially
} more expensive than tungsten.
}
} It'd be best to consult with Jeol in any case before you decide to do this.
}
} Regards,
} Roy
}
} -----Original Message-----
} X-from: Nicolas.Stephant-at-univ-nantes.fr
} [mailto:Nicolas.Stephant-at-univ-nantes.fr]
} Sent: Thursday, June 16, 2011 1:45 PM
} To: Roy Golombick
} Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi John
}
} LaB6 filament have to work in a good vacuum. There is some instruments
} like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
} of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
} your vacuum system is very good you may use LaB6 but you must understand
} that you will work on an edge. Anyway, you may try without danger for
} your instrument and you will see if LaB6 stay save during one year
} (good) or one month. Please note that you may use another wehnelt cap
} for this kind of filament and you have to change distance beetween
} filament tip and wehnelt cap. First eating of this filament must be done
} very slowy (about one hour) after almost one night of pumping. Working
} with LaB6 is very comfortable because the brigtness is very high and it
} may increase significantly top end result.
} Regards
}
} Nicolas STEPHANT
}
} Université de Nantes
} Institut Jean Rouxel
} Service de microscopie électronique à balayage et microanalyse
} 2 rue de la Houssinière
} BP 92208
} 44322 Nantes cédex 3
}
} Tél : 02 40 37 64 26
} Mél : nicolas.stephant-at-univ-nantes.fr
} Web : http://www.univ-nantes.fr/smebm
}
} "Le monde n'existe que pour autant que nous sommes capables d'en
} produire une image"
}
} C.G Jung
} john.mitchels-at-gmail.com a écrit :
}
} ----------------------------------------------------------------------------
}
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe --
} }
} http://www.microscopy.com/MicroscopyListserver
}
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} }
} }
} ----------------------------------------------------------------------------
}
} } Hi Listers
} }
} } We have a Jeol 1200 EXII TEM and we were wondering if it is good
} } enough in which to use a LaB6. The engineers seem to have mix
} } opinions, as does the great google. I would like comments from anyone
} } who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} } The microscope is behaving itself very well, no leaks everything is as
} } good as it gets given its age. With one fitted do you notice any
} } significant difference when working at the top end?
} }
} } Thanks in advance.
} }
} } John
} }
} } ==============================Original
} }
} Headers==============================
}
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} } 4, 30 -- Message-ID: {BANLkTi=ReDJ8FYz_b+NXqTe6CnijZeSs5w-at-mail.gmail.com}
} } 4, 30 -- Subject: LaB6 in a Jeol 1200ex2 is it possible?
} } 4, 30 -- From: John Mitchels {john.mitchels-at-gmail.com}
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} } 4, 30 -- Content-Type: text/plain; charset=ISO-8859-1
} } ==============================End of -
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}



==============================Original Headers==============================
9, 25 -- From Nicolas.Stephant-at-univ-nantes.fr Thu Jun 23 04:44:57 2011
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==============================End of - Headers==============================




From: protrain-at-emcourses.com
Date: Thu, 23 Jun 2011 06:29:58 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

I am interested in your comment regarding the TEM. As a ex demonstrator for
Hitachi, JEOL and ISI we always ran TEM just under saturated for a reason.

If you operate a TEM with the condenser at crossover you visualise the
virtual source. It is a very poor operating technique if you do this
because the illumination is at its least coherent! Why demonstrators (and I
teach people) run under saturated is that at high magnifications you would
not see that you are in this poor operating condition if you did not sense
the shadows from imaging the under saturated filament.

What I teach is to operate with some dark patches within the filament image.
At low magnifications you are able to see when you are at condenser
crossover and are able to over focus the illumination to increase the
coherence. At high magnification as mentioned above you sense the uneven
illumination at crossover so you know that from that point you should move
over focus to improve coherence/performance.

As far as I am concerned these are fundamentals of TEM operation. Just take
an image with the illumination near crossover and then repeat with the
illumination further over focus and you will see my point. If you are
unable to see a difference in the image quality it indicates to me that the
camera you are using has insufficient resolution. Be fortunate enough to
still use film and you will clearly see the difference.

I hope this helps?

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com




-----Original Message-----
X-from: Nicolas.Stephant-at-univ-nantes.fr
[mailto:Nicolas.Stephant-at-univ-nantes.fr]
Sent: 23 June 2011 10:46
To: protrain-at-emcourses.com

Hi listeners

In fact a tungstene filament can get a very long life if it is not
saturate. This way is usable in SEM but not so much in TEM because light
density of the spot may become irregular. Temperature of a tungsten
filament increase quickly even when a few current eating is added that
is the reason why it's very important for lifetime to adjust saturation
just on the edge. There is many lifetime value of a tungstene filament
almost one for each microscope and for each people who adjust saturation
current. Vacuum is more important otherwise it cannot work well, then
adjustment of current is also very important for lifetime. Working
unsaturate can be done if the job is not precise (small magnification,
big spot size, no low voltage, etc..) but may cause problems if you need
resolution or very stable current. In our SEM, tungstene filament is
changed every 3 month; we work 5 days per week with a saturate filament
and under 4.10-6 mBar.
Regards.

--
Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique à balayage et microanalyse
2 rue de la Houssinière
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://www.univ-nantes.fr/smebm

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"

C.G Jung

protrain-at-emcourses.com a écrit :
}
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}
} Hi Ken
}
} I usually agree with your comments but this time I have to throw in a
curved
} ball.
}
} I often work with automated analysis SEMs which have a tungsten filament
} life of upwards from 2500 hours; admittedly we run at 11 micro amps
emission
} with the filament well back. The instrument are not used by electron
} microscopists so the idea behind this long life being that the service
} technician is able to fit a new filament on their six monthly service
} visits.
}
} We worked hard to obtain this life and one of the features that we found
} that was very important in our development was the vacuum level. Thus we
} run with an ion pump on the gun and the difference in filament life is
} considerable. This is no criticism of the basic instrument, which exhibits
a
} gun vacuum level in its standard form the same if not better than its
} competitors.
}
} Another area that the gun vacuum level influenced was the high voltage
} stability. The instruments need to run for up to 24 hours unattended and
it
} is most important for the high voltage to remain absolutely stable over
that
} entire period of time. Double plots of high voltage level and gun vacuum
} show that once the gun vacuum settles so does the high voltage. Thus the
} operators wait for this stability period prior to starting a sample run;
} proven to be the best practice.
}
} As a second point I know LaB6 users who have been forced to use tungsten
} whilst waiting for a new source and they have also commented on the
} increased filament life.
}
} Maybe I should say that not one of these comments relates to clients in
the
} United States; must be related to the type of air :-)
}
} Regards
}
} Steve
}
} Steve Chapman FRMS
} Senior Consultant Protrain
} For consultancy and training in electron microscopy world wide
} Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
} www.emcourses.com
}
}
}
} -----Original Message-----
} X-from: kenconverse-at-qualityimages.biz
[mailto:kenconverse-at-qualityimages.biz]
} Sent: 22 June 2011 16:07
} To: protrain-at-emcourses.com
} Subject: [Microscopy] RE: LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
}
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}
} Roy,
} I beg to differ. I have not seen any significant increase in tungsten
} filament life in an ion-pumped gun versus a normal gun in good condition
in
} an SEM. Poor vacuum will definitely shorten a W filament's life, but a
} better vacuum makes very little difference due to the fact that W
filaments
} run hotter than LaB6 and evaporate faster. The reason poor vacuum
} accelerates their demise is due to oxidation on top of evaporation.
}
} No W filament I've ever seen has lasted more than about 300 hours at
} operating temperature in an SEM, 10E-7T vacuum notwithstanding. My
} observations may not hold for a TEM because TEMs run at lower
} temperatures/emission currents and therefore evaporation rates should be
} significantly lower.
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: Roy-at-picotech.co.il [mailto:Roy-at-picotech.co.il]
} Sent: Wednesday, June 22, 2011 10:31 AM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
}
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} To Subscribe/Unsubscribe --
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}
----------------------------------------------------------------------------
}
} Hi John.
}
} Like Nicolas said here below, it's all a matter of vacuum.
} Because of the well pumped gun (usually turbo or ion pumped), LaB6 SEMs
} usually have a filament life of way above 1000 hours. If you take the same
} SEM and exchange the LaB6 filament for a Tungsten one, you'll be able to
get
} way above 1000 hours with the tungsten filament.
}
} So, in theory if your SEM gun has a very good vacuum, you should be
getting
} a very high lifetime from each tungsten filament. If not, you could expect
} to get good result with the LaB6 filemant, but keep the lifetime of your
} current tungsten one. Keep in mind that the LaB6 filament is exponentially
} more expensive than tungsten.
}
} It'd be best to consult with Jeol in any case before you decide to do
this.
}
} Regards,
} Roy
}
} -----Original Message-----
} X-from: Nicolas.Stephant-at-univ-nantes.fr
} [mailto:Nicolas.Stephant-at-univ-nantes.fr]
} Sent: Thursday, June 16, 2011 1:45 PM
} To: Roy Golombick
} Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?
}
}
}
}
}
----------------------------------------------------------------------------
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}
----------------------------------------------------------------------------
}
} Hi John
}
} LaB6 filament have to work in a good vacuum. There is some instruments
} like your TEM working with LaB6 in a gun pumped by DP or turbo, but most
} of the LaB6 TEM work with high vacuum in the gun provided by SIP. If
} your vacuum system is very good you may use LaB6 but you must understand
} that you will work on an edge. Anyway, you may try without danger for
} your instrument and you will see if LaB6 stay save during one year
} (good) or one month. Please note that you may use another wehnelt cap
} for this kind of filament and you have to change distance beetween
} filament tip and wehnelt cap. First eating of this filament must be done
} very slowy (about one hour) after almost one night of pumping. Working
} with LaB6 is very comfortable because the brigtness is very high and it
} may increase significantly top end result.
} Regards
}
} Nicolas STEPHANT
}
} Université de Nantes
} Institut Jean Rouxel
} Service de microscopie électronique à balayage et microanalyse
} 2 rue de la Houssinière
} BP 92208
} 44322 Nantes cédex 3
}
} Tél : 02 40 37 64 26
} Mél : nicolas.stephant-at-univ-nantes.fr
} Web : http://www.univ-nantes.fr/smebm
}
} "Le monde n'existe que pour autant que nous sommes capables d'en
} produire une image"
}
} C.G Jung
} john.mitchels-at-gmail.com a écrit :
}
}
----------------------------------------------------------------------------
}
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of
America
} } To Subscribe/Unsubscribe --
} }
} http://www.microscopy.com/MicroscopyListserver
}
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} }
} }
}
----------------------------------------------------------------------------
}
} } Hi Listers
} }
} } We have a Jeol 1200 EXII TEM and we were wondering if it is good
} } enough in which to use a LaB6. The engineers seem to have mix
} } opinions, as does the great google. I would like comments from anyone
} } who has or has had a 1200 fitted with a LaB6. If you have, which ones?
} } The microscope is behaving itself very well, no leaks everything is as
} } good as it gets given its age. With one fitted do you notice any
} } significant difference when working at the top end?
} }
} } Thanks in advance.
} }
} } John
} }
} } ==============================Original
} }
} Headers==============================
}
} } 4, 30 -- From john.mitchels-at-gmail.com Thu Jun 16 03:27:31 2011
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} [209.85.210.41])
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} p5G8RUwL002495
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} }
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From: edelmare-at-muohio.edu
Date: Thu, 23 Jun 2011 07:44:08 -0500
Subject: [Microscopy] (Fwd) Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


John:

Yes, we also have a JEOL 1200EXII with stacked DP, and running
LaB6 (Gun vacuum runs below 1 x10-4 Pa the gage pegs there). We
recently inherited the scope so I do not have LaB6 life expectancy.
It came with the LaB6 installed and I know that it has been running
LaB6 for years. I am happy with Peter gets 900-1500 hours.

I was horrified to have the LaB6 initially fearing its fragility.
But it has
survived 7 months including training 10 brand new TEM students! (New
to EM not just this TEM).

For some maintenance issues (allowing rapid filament startups) and
for testing we recently switched to a Tungsten filament. Tungsten is
fine below 150Kx but brightness really becomes and issue 100K - 500K.

So here's a question for the list. I noted on our new JEOL 2100 with
a
LaB6, running at 80Kv or 100Kv imaging on the Phos Screen appears
"dim" (aligned and operating properly). I compared this to a JEOL
100S Tungsten, and JEOL 100CXII Tungsten, and Zeiss 10C Tungsten. All
these appear brighter at 80 & 100Kv. So my assumpution was: (1) the
Phos mixture on the 2100 screen was different to accomdate the 200Kv
or (2) the tigher alignments (and 3 Cond Lenes) to gain higher
resolution removed more electrons from the beam, effectively reducing
the beam current down the column. But I have noted the same reduced
brightness on the 1200EXII and does not have the 3 CL's only 2CL's.
In talking with some service engineers they noted the same thing newer
scopes appear to be "dimmer" to human eyes. One mentioned the a
posible assumption that everyone uses digital cameras these days so
losing more beam current isn't an issue. However, the 1200 series was
before ubiquity of digital cameras (early 90's). And yes, I have
taken into account worn out beat up screens and have compared in fact
worn out screen (100s) and brand new coated screens (10C & 2100) and
good/ excellent condition 100CXII & 1200) - so I do not believe it is
wear and tear on the screens. BUT could it be changes in the
Phos-mixture on the screens? Or something else?

Any one have any comments?

Please I do not want to start a brand war. I have not had the chance
to spend siognificant time on FEI or Hitachi Scopes to fairly judge
their brightness.






On 16 Jun 2011 at 4:28, john.mitchels-at-gmail.com wrote:

}
}
}
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} Hi Listers
}
} We have a Jeol 1200 EXII TEM and we were wondering if it is good
} enough in which to use a LaB6. The engineers seem to have mix
} opinions, as does the great google. I would like comments from
} anyone who has or has had a 1200 fitted with a LaB6. If you have,
} which ones? The microscope is behaving itself very well, no leaks
} everything is as good as it gets given its age. With one fitted do
} you notice any significant difference when working at the top end?
}
} Thanks in advance.
}
} John
}
} ==============================Original
} Headers============================== 4, 30 -- From

Richard E. Edelmann, Ph.D.
EXPO Editor, Microscopy and Microanalysis Supplement
Director, Center for Advanced Microscopy & Imaging
9C Upham Hall
Miami University, Oxford, OH 45056
Ph: 513.529.5712 Fax: 513.529.4243
E-mail: edelmare-at-muohio.edu
http://www.cami.muohio.edu



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From: John.Mardinly-at-asu.edu
Date: Thu, 23 Jun 2011 15:38:47 -0500
Subject: [Microscopy] Tem EDX

Contents Retrieved from Microscopy Listserver Archives
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The reviewer should visit the electron microscope lab at Western Digital Media. All the samples are at least slightly magnetic, because that is all they work on. I am sure the same is true at Seagate, Hitachi and every university that does research on magnetic materials.

A. John Mardinly,
ASU

-----Original Message-----
X-from: dsherman-at-purdue.edu [mailto:dsherman-at-purdue.edu]
Sent: Wednesday, June 22, 2011 3:21 PM
To: John Mardinly

Hi all,

We have a SDD EDX system on our TEM and routinely get Co, Cu, and Fe in the
spectra. I understood that these elements are from the polepiece and other
components in the sample area.

When a student submitted a manuscript with these elements in the spectrum,
along with the other elements of interest (IN, Sb), a reviewer said that
the TEM instruments are strictly restricted from using the magnetic
impurities/parts, so there must be other sources for iron.

Comments? How would you respond to this reviewer.

Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy






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From: colijn.1-at-osu.edu
Date: Thu, 23 Jun 2011 16:25:56 -0500
Subject: [Microscopy] Tem EDX

Contents Retrieved from Microscopy Listserver Archives
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Hi Debby,

While the Fe, Co etc are undoubtedly from the pole-piece, I wonder why
you see such a significant contribution to the spectrum. As long as the
objective aperture is out, even the scattered electrons should go down
the bore of the pole-piece. Brehmstrahlung from the condenser apertures
may have some effect, but it should be small.

Analytical scopes have improved dramatically over the years and I
thought stray signal was pretty much a thing of the past. Pretty much
every microscope I've used in the past 25 years has almost no x-rays
from the p-p. Do you have an unusual scope? (You can reply off-line if
you don't wish to identify the scope publicly.) In my experience, the
EDX collimators on TEM detectors don't shield very much, so the
improvements in stray signal have been due to changes in the column itself.

Cheers,
Henk


At 6/22/2011 8:32 PM, dsherman-at-purdue.edu wrote:
}
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} Thanks to all for the quick response. Consensus is that the reviewer is
} incorrect as many scopes do see Fe and Co in EDX spectra from the polepiece.
} The amount may depend on the type of microscope, detector, etc but
} apparently many instruments show this.
}
} I didn't mention this in my first E-mail but I regularly take a background
} spectrum and they invariably show Fe and Co in our instrument. It is
} difficult to do a background subtraction and remove all of it. Presumably
} this is because the sample does deflect many more electrons than just the
} support film resulting in more X-ray production from other areas within the
} objective lens.
}
} We also have a cryo blade that is made of copper and also the connection
} from the external nitrogen dewar to the decontaminator is a copper braid.
} Thus, even when using a low background (Beryllium) holder and nickel grid we
} often get a small amount of Cu. This may not show up with a SiLi detector
} but we get so many counts with the SDD that this may translate into higher
} background peaks for some of these elements.
}
} Debby
}
}
} On 6/22/11 6:15 PM, "Debby Sherman" {dsherman-at-purdue.edu} wrote:
}
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} } ----------------------------------------------------------------------------
} }
} } Hi all,
} }
} } We have a SDD EDX system on our TEM and routinely get Co, Cu, and Fe in the
} } spectra. I understood that these elements are from the polepiece and other
} } components in the sample area.
} }
} } When a student submitted a manuscript with these elements in the spectrum,
} } along with the other elements of interest (IN, Sb), a reviewer said that
} } the TEM instruments are strictly restricted from using the magnetic
} } impurities/parts, so there must be other sources for iron.
} }
} } Comments? How would you respond to this reviewer.
} }
} } Debby
} }
} } ---
} } Debby Sherman, Director Phone: 765-494-6666
} } Life Science Microscopy Facility FAX: 765-494-5896
} } Purdue University E-mail:dsherman-at-purdue.edu
} } S-052 Whistler Building
} } 170 S. University Street
} } West Lafayette, IN 47907
} } http://www.ag.purdue.edu/facilities/microscopy
} }
} }
} }
} }
} }
} }
} } ==============================Original Headers==============================
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--
Hendrik O. Colijn www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

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From: Karsten.Goemann-at-utas.edu.au
Date: Thu, 23 Jun 2011 17:47:59 -0500
Subject: [Microscopy] Re: LaB6 in a Jeol 1200ex2 is it possible?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve,

We haven't spent a lot of time on quantifying
this so 45 minutes might be enough. But we're
loading up to 16 thick polished rock mounts
together, so the time to achieve good vacuum can
also vary a little. 1 hour certainly works and we
can use the time to set up the run, do surveys of
the specimens...

Is the filament heat current not still drifting
during the HV tank stabilisation? I guess we
could try saturated vs. undersaturated
stabilisation with some sort of reproducible
conditions (e.g. same pressure before venting,
same duration vented, pump down without specimens
installed...). Or constantly have a picoammeter
hooked up and monitor the probe current during
stabilisation.

Optimising this further wasn't high priority so
far as overall stability and filament lifetimes
are good (current one still going after over
2000h).

Cheers,

Karsten



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} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 23 Jun 2011 18:38:06 -0500
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: LaB6 vs W

Contents Retrieved from Microscopy Listserver Archives
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Email: Mathew_1980-at-yahoo.com Name: Mathew Falls

Title-Subject: [Filtered] LaB6 vs W

Message: I'm new at SEM EDX. At my new place we have a jeol jsm 6460lv
with capability for both LaB6 and tungsten filaments. Most of the EDX
work done here was made using the W anode; however, nobody can really
explain why and that is my question:
-For SEM EDX at magnifications of ~ 5000x, what source is better LaB6 or
W filament? Why?

Thanks a lot.
Mathew



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From: naomi_mccallum-at-health.qld.gov.au
Date: Fri, 24 Jun 2011 02:18:48 -0500
Subject: [Microscopy] JEOL JSM-6010LA InTouchScope

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers

In the process of acquiring a new SEM the JEOL InTouchScope is up for consideration. Has any one encountered this tool that is willing to share their thoughts (on/off list)? We are particularly curious about the performance of the SE detector for LV. And can EDS really be simplified for the uninitiated to obtain accurate results?

We routinely process biological specimens for pathological diagnosis. Eg. Hair, tissue (incl teeth & bone), and occasional prosthetics.

Thanks in advance
Naomi

Naomi McCallum
Supervising Scientist, EM Unit, Anatomical Pathology
Pathology Queensland
Australia



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From: protrain-at-emcourses.com
Date: Fri, 24 Jun 2011 04:05:46 -0500
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: LaB6 vs W

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Matthew

If you are working above 10kV and at a max of 5,000X I see no point of
moving to LaB6. LaB6 is brighter than tungsten and running at a lower
temperature has less chromatic aberration. The problem with LaB6 is that
you must have a very good vacuum or the possibility of a discharge could be
catastrophic! A discharge may seed a crystal in what is meant to be a single
crystal tip. Unfortunately over time this seed crystal may grow and
eventually you have a double emitting source. Nice for fancy images but not
for science! Thus great caution is required when running up the LaB6
filament and changing kV in order to prevent discharge occurring.

If you were always working below 5kV and looking at images I would suggest
LaB6 as due to the higher brightness and lower aberrations this source will
always better tungsten at these levels.

Enjoy!

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com





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Email: Mathew_1980-at-yahoo.com Name: Mathew Falls

Title-Subject: [Filtered] LaB6 vs W

Message: I'm new at SEM EDX. At my new place we have a jeol jsm 6460lv
with capability for both LaB6 and tungsten filaments. Most of the EDX
work done here was made using the W anode; however, nobody can really
explain why and that is my question:
-For SEM EDX at magnifications of ~ 5000x, what source is better LaB6 or
W filament? Why?

Thanks a lot.
Mathew



Login Host: 62.178.94.162
---------------------------------------------------------------------------



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From: sergei2-at-ornl.gov
Date: Fri, 24 Jun 2011 13:23:11 -0500
Subject: [Microscopy] Advanced SPM Workshop at CNMS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear colleagues

We are delighted to bring to your attention the following workshop at
the Center for Nanophase Materials Sciences:
Advanced Scanning Probe Microscopies at the CNMS: Materials Structure
and Function from Atomic to Micron Scales

September 21-22, 2011

Organizers:
Arthur P. Baddorf (ORNL)
Sergei V. Kalinin (ORNL)

Invited Lecturers:
S. Jesse, A. Tselev, A.P. Li, P. Maksymovych, N. Balke, Z. Gai, M. Pan
With participation of Asylum Research, Anasys, Bruker, NT-MDT, Omicron
NanoTechnology USA, RHK, and SPECS


Development of nanoscience and nanotechnology requires the capability to
image,
manipulate, and control matter and energy on the nanometer, molecular,
and ultimately,
atomic levels. Scanning probe microscopy (SPM) techniques provide
unparalleled access to
the nanoscale world through structural, functional, and chemical imaging
and manipulation on
nanometer and atomic scales. Beyond imaging surface topography, SPMs
have found an
extremely broad range of applications for probing electronic, transport,
optical, magnetic,
mechanical, and electromechanical properties – often at the level of
several tens of
nanometers and below. Achieving full potential of SPM requires focused
effort on developing
novel SPM platforms and imaging modes, data interpretation routines, as
well as capabilities
for the in-situ sample preparation.

This workshop features presentations by CNMS staff members and SPM industry
focused on technical capabilities developed and/or available at CNMS.
These include:

• Atomic and vibrational imaging by low-temperature high magnetic field STM
• Transport characterization by 4-probe STM/SEM
• Scanning Electron Microscopy with Polarization Analysis
• Piezoresponse Force Microscopy and Spectroscopy
• Band Excitation SPMs for thermal, magnetic, and mechanical property
mapping
• Electrochemical Strain Microscopy of Li-ion and oxygen conductors
• Microwave imaging and spectroscopy

This workshop will also feature presentation by leading SPM vendors
devoted to the
latest advances in SPM modes. Ultimately, we aim to build a network of
advanced SPM
practitioners to promote rapid dissemination of theoretical knowledge,
experimental protocols,
and novel technique development in these rapidly growing areas.

For more information and registration, please check regularly the CNMS
web site at
www.cnms.ornl.gov or contact the organizers at sergei2-at-ornl.gov or
baddorfap-at-ornl.gov.

--
Sergei V. Kalinin
co-Theme Leader for Functional Imaging on the Nanoscale
The Center for Nanophase Materials Sciences
and Materials Sciences and Technology Division
Oak Ridge National Laboratory
Oak Ridge, TN 37922

Adjunct Associate Professor,
Department of Materials Science and Engineering,
University of Tennessee, Knoxville

Phone: (865) 241-0236
http://imaging.ornl.gov


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From: maloneyb-at-fiu.edu
Date: Fri, 24 Jun 2011 14:54:56 -0500
Subject: [Microscopy] accounting software and instrument usage

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Group: has anyone had any luck in finding a system that users can
log into - when using an instrument - this system would keep track of
time used on the instrument and would help in creating invoices. Any
recommendations would be greatly appreciated. Also this may help in
keeping hackers out of your system.
Thanks
Barbara

==============================Original Headers==============================
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From: PhillipsT-at-missouri.edu
Date: Fri, 24 Jun 2011 15:05:26 -0500
Subject: [Microscopy] accounting software and instrument usage

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

One flaw in the concept of feeding "log in" and "log out" into an accounting system is that it assumes one uses all the time one has reserved. If a client books an instrument from 2 pm to 5 pm, but arrives and logs in at 3:15 and leaves at 4:15, they would be billed for 1 hr even though the reservation kept others from using the instrument for 3 hours. We are often not selling beam time as much as room time. We use the Calcium software http://www.brownbearsw.com/calcium/ program to schedule our core instruments. Any client can log in to the calendar on line to see when free time exists but they can't add or delete a reservation on their own. They are required to call core staff to book time. That prevents someone who is unqualified from reserving an instrument or a qualified user cancelling a reservation at the last minute and avoid being billed. The booking information can be exported out to an excel spread sheet for billing purposes. It is not fully automated but it works pretty well. Tom


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: maloneyb-at-fiu.edu [mailto:maloneyb-at-fiu.edu]
Sent: Friday, June 24, 2011 2:55 PM
To: Phillips, Thomas E.

Dear Group: has anyone had any luck in finding a system that users can
log into - when using an instrument - this system would keep track of
time used on the instrument and would help in creating invoices. Any
recommendations would be greatly appreciated. Also this may help in
keeping hackers out of your system.
Thanks
Barbara

==============================Original Headers==============================
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From: randy-nessler-at-uiowa.edu
Date: Fri, 24 Jun 2011 15:21:02 -0500
Subject: [Microscopy] accounting software and instrument usage

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We use OCF for scheduling but haven't used the billing functionality of it yet. It is reservation versus logon/logout. As Tom Phillips commented, you probably want to think about capturing room time as it prevents others from accessing the equipment.
http://bcf.arl.arizona.edu/

FOM will capture login/logout but you need to buy swipe card readers at each instrument (if I remember correctly).
http://www.fomnetworks.com/FOM_features.html


Randy

-----Original Message-----
X-from: maloneyb-at-fiu.edu [mailto:maloneyb-at-fiu.edu]
Sent: Friday, June 24, 2011 3:03 PM
To: Nessler, Randy A

Dear Group: has anyone had any luck in finding a system that users can log into - when using an instrument - this system would keep track of time used on the instrument and would help in creating invoices. Any recommendations would be greatly appreciated. Also this may help in keeping hackers out of your system.
Thanks
Barbara

==============================Original Headers==============================
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14, 31 -- From randy-nessler-at-uiowa.edu Fri Jun 24 15:21:02 2011
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From: syli-at-northwestern.edu
Date: Fri, 24 Jun 2011 20:47:10 -0500
Subject: [Microscopy] accounting software and instrument usage

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Claim: This email is sent on behalf of FOM Networks, Inc.

Dear Barbara and Randy,
I believe the FOM system is the best solution that suits your needs. A
typical use case of the system is as follows:
1) The user reserves a session via a standard webpage. There is no need to
install any client-side software.
2) The user logs into the system and turns on a hardware access control box
or a software access control to the instrument. This ensures the accurate
login/logoff time.
3) The user logs off when he is done and the access control is turned off.
4) At the end of each month, the manager downloads fully customizable
reports/invoices.

Please feel free to email me offline if you have more questions.
Thanks,
Shuyou

_________________
Shuyou Li, Ph.D.
FOM Networks, Inc.
www.fomnetworks.com
224-225-9168




-----Original Message-----
X-from: randy-nessler-at-uiowa.edu [mailto:randy-nessler-at-uiowa.edu]
Sent: Friday, June 24, 2011 3:23 PM
To: syli-at-northwestern.edu

We use OCF for scheduling but haven't used the billing functionality of it
yet. It is reservation versus logon/logout. As Tom Phillips commented, you
probably want to think about capturing room time as it prevents others from
accessing the equipment.
http://bcf.arl.arizona.edu/

FOM will capture login/logout but you need to buy swipe card readers at each
instrument (if I remember correctly).
http://www.fomnetworks.com/FOM_features.html


Randy

-----Original Message-----
X-from: maloneyb-at-fiu.edu [mailto:maloneyb-at-fiu.edu]
Sent: Friday, June 24, 2011 3:03 PM
To: Nessler, Randy A

Dear Group: has anyone had any luck in finding a system that users can log
into - when using an instrument - this system would keep track of time used
on the instrument and would help in creating invoices. Any recommendations
would be greatly appreciated. Also this may help in keeping hackers out of
your system.
Thanks
Barbara

==============================Original Headers==============================
1, 16 -- From maloneyb-at-fiu.edu Fri Jun 24 14:54:56 2011 1, 16 -- Received:
from fiumailsmtp.fiu.edu (dithub02.ad.fiu.edu [131.94.72.23])
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 25 Jun 2011 07:43:06 -0500
Subject: [Microscopy] viaWWW:RE: Tem EDX

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Email: luo-at-tamu.edu Name: Zhiping Luo

Organization: Texas A&M University

Title-Subject: [Filtered] RE: Tem EDX

Message: Hi Debby,


I agree with Henk that you should not see the elements from the p-p if
the detector geometry is optimized. You need to request for service to
figure out where is the problem.


Normally the possible spurious source is the grids if you use, as well
as the specimen holder when it is translated far way from its zero position.


Sincerely,


Zhiping Luo

} Date: Thu, 23 Jun 2011 16:28:09 -0500
} To: zhiping_luo-at-hotmail.com
} From: colijn.1-at-osu.edu
} Subject: [Microscopy] Tem EDX
}
}
}
}
} ----------------------------------------------------------------------------
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} Hi Debby,
}
} While the Fe, Co etc are undoubtedly from the pole-piece, I wonder why
} you see such a significant contribution to the spectrum. As long as the
} objective aperture is out, even the scattered electrons should go down
} the bore of the pole-piece. Brehmstrahlung from the condenser apertures
} may have some effect, but it should be small.
}
} Analytical scopes have improved dramatically over the years and I
} thought stray signal was pretty much a thing of the past. Pretty much
} every microscope I've used in the past 25 years has almost no x-rays
} from the p-p. Do you have an unusual scope? (You can reply off-line if
} you don't wish to identify the scope publicly.) In my experience, the
} EDX collimators on TEM detectors don't shield very much, so the
} improvements in stray signal have been due to changes in the column itself.
}
} Cheers,
} Henk
}
}
} At 6/22/2011 8:32 PM, dsherman-at-purdue.edu wrote:
} }
} } ----------------------------------------------------------------------------
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} }
} } Thanks to all for the quick response. Consensus is that the reviewer is
} } incorrect as many scopes do see Fe and Co in EDX spectra from the polepiece.
} } The amount may depend on the type of microscope, detector, etc but
} } apparently many instruments show this.
} }
} } I didn't mention this in my first E-mail but I regularly take a background
} } spectrum and they invariably show Fe and Co in our instrument. It is
} } difficult to do a background subtraction and remove all of it. Presumably
} } this is because the sample does deflect many more electrons than just the
} } support film resulting in more X-ray production from other areas within the
} } objective lens.
} }
} } We also have a cryo blade that is made of copper and also the connection
} } from the external nitrogen dewar to the decontaminator is a copper braid.
} } Thus, even when using a low background (Beryllium) holder and nickel grid we
} } often get a small amount of Cu. This may not show up with a SiLi detector
} } but we get so many counts with the SDD that this may translate into higher
} } background peaks for some of these elements.
} }
} } Debby
} }
} }
} } On 6/22/11 6:15 PM, "Debby Sherman" {dsherman-at-purdue.edu} wrote:
} }
} } }
} } } ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} } } ----------------------------------------------------------------------------
} } }
} } } Hi all,
} } }
} } } We have a SDD EDX system on our TEM and routinely get Co, Cu, and Fe in the
} } } spectra. I understood that these elements are from the polepiece and other
} } } components in the sample area.
} } }
} } } When a student submitted a manuscript with these elements in the spectrum,
} } } along with the other elements of interest (IN, Sb), a reviewer said that
} } } the TEM instruments are strictly restricted from using the magnetic
} } } impurities/parts, so there must be other sources for iron.
} } }
} } } Comments? How would you respond to this reviewer.
} } }
} } } Debby
} } }
} } } ---
} } } Debby Sherman, Director Phone: 765-494-6666
} } } Life Science Microscopy Facility FAX: 765-494-5896
} } } Purdue University E-mail:dsherman-at-purdue.edu
} } } S-052 Whistler Building
} } } 170 S. University Street
} } } West Lafayette, IN 47907
} } } http://www.ag.purdue.edu/facilities/microscopy
} } }


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From: microscopylistserver-noreply-at-microscopy.com
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Subject: [Microscopy] viaWWW:wanted DRV-2000

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From: beth-at-plantbio.uga.edu
Date: Mon, 27 Jun 2011 16:16:23 -0500
Subject: [Microscopy] removing the handle from a Reichert 2800 cryostat

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Hi all,
I need advice on dismantling a Reichert 2800 cryostat. I cannot remove
the handle. I've tried an allen wrench but I can't get it to budge. Is
there a magic alignment?
thanks for any help,
Beth


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From: hkonishi-at-wisc.edu
Date: Tue, 28 Jun 2011 17:02:26 -0500
Subject: [Microscopy] Software to find the most intense pixels

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I have two questions.





1. How to get coordinates of the most intense pixels


I want to get coordinates of the most intense pixels in an area on STEM image. Manually I can find them on Digital Micrograph and get the coordinates, but I am looking for a more convenient method. If there is a software for such purpose, please advise.



Because of the background noise, the most intense pixels are not always the atom positions. If there is a software that handles the background noise problem and finds true “most intense pixels”, please advise.





2. How to get total pixel number in a ROI on Digital Micrograph


I want to know how to get the total pixel number in a ROI.











Thank you,


Hiromi

UW-Madison



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From: p.zoon-at-nfi.minjus.nl
Date: Wed, 29 Jun 2011 01:30:33 -0500
Subject: [Microscopy] RE: Software to find the most intense pixels

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Hi,

Have a look at ImageJ. This is a free image analysis program that has a lot of usefull features and plugins.
Total number of pixels in ROI is generated automatically when you make/select a ROI. Coordinate of most intense pixel(s) can be found as well, by performing a measurement. If this specific option is not present it should be rather straightforward to write your own macro that will give you the x,y coordinate.

Kind regards


dr. Peter Zoon
Forensic Scientist

..................................................................................
Netherlands Forensisc Institute
Microtrace Department
Laan van Ypenburg 6 | 2497 GB | The Hague
Postbus 24044 | 2490 AA | The Hague


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I have two questions.





1. How to get coordinates of the most intense pixels


I want to get coordinates of the most intense pixels in an area on STEM image. Manually I can find them on Digital Micrograph and get the coordinates, but I am looking for a more convenient method. If there is a software for such purpose, please advise.



Because of the background noise, the most intense pixels are not always the atom positions. If there is a software that handles the background noise problem and finds true "most intense pixels", please advise.





2. How to get total pixel number in a ROI on Digital Micrograph


I want to know how to get the total pixel number in a ROI.











Thank you,


Hiromi

UW-Madison



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From: mike.bode-at-resaltatech.com
Date: Wed, 29 Jun 2011 10:08:01 -0500
Subject: [Microscopy] Software to find the most intense pixels

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Hiromi, after reading your question again, it seems that you are not
simply looking for a pixel value. You mention STEM and atom positions, so I
suppose that you rather want to locate the atom from noisy data. Is that
correct?

If so, I think you will have to do some modeling. I don't know what
intensity distribution you can expect from a single atom (or a column of
atoms in a crystal) from STEM, but let's assume it could be something like a
Gaussian distribution, where the maximum shows the most likely position of
the atom. In that case you would have to set an ROI around the area of the
atom, and fit a 2-D Gaussian to the data. This can also give you error
values for the position of the maximum. If you have a crystal, then you can
probably define a grid, and run your algorithm automatically on any field in
the grid.

Unfortunately I can't help you with DM, but I am sure it has capabilities to
do this.

Mike


---
Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com






-----Original Message-----
X-from: hkonishi-at-wisc.edu [mailto:hkonishi-at-wisc.edu]
Sent: Tuesday, June 28, 2011 4:13 PM
To: mike.bode-at-resaltatech.com




I have two questions.





1. How to get coordinates of the most intense pixels


I want to get coordinates of the most intense pixels in an area on STEM
image. Manually I can find them on Digital Micrograph and get the
coordinates, but I am looking for a more convenient method. If there is a
software for such purpose, please advise.



Because of the background noise, the most intense pixels are not always the
atom positions. If there is a software that handles the background noise
problem and finds true "most intense pixels", please advise.





2. How to get total pixel number in a ROI on Digital Micrograph


I want to know how to get the total pixel number in a ROI.











Thank you,


Hiromi

UW-Madison



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From: bozzola-at-siu.edu
Date: Wed, 29 Jun 2011 12:30:49 -0500
Subject: [Microscopy] TEM stability of polystyrene beads

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A researcher wants to study the uptake of 200 nm polystyrene beads
using TEM of sectioned materials. I believe the beads will be
dissolved in any solvent we use (including ethanol). I suggested other
nanoparticles, but the researcher believes PS would be best for the
work.

I was hoping to use ethanol with the epoxy resin (to avoid more
powerful organic solvents like acetone and polypropylene) but the
manufacturer of the beads said any organic solvent would dissolve the
beads.

Anyone have experience using PS beads and embedding?

Thanks.

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: jarnikm-at-mail.nih.gov
Date: Wed, 29 Jun 2011 14:54:40 -0500
Subject: [Microscopy] Re: TEM stability of polystyrene beads

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

John,

You might want to remember that some of the Epon substitutes will also dissolve PS.
I have used LX-112 from Ladd and it works well with PS. I assume that there are others that do also but EMbed-812 will not work with it for it melted my small polystyrene petri dishes.

I have no financial ties to the above products but simply use both.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.

________________________________
X-from: {bozzola-at-siu.edu}
Reply-To: {bozzola-at-siu.edu}

You could try Tokuyasu cryosectioning, I guess?

Michal


On Jun 29, 2011, at 1:39 PM, bozzola-at-siu.edu wrote:

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} A researcher wants to study the uptake of 200 nm polystyrene beads
} using TEM of sectioned materials. I believe the beads will be
} dissolved in any solvent we use (including ethanol). I suggested other
} nanoparticles, but the researcher believes PS would be best for the
} work.
}
} I was hoping to use ethanol with the epoxy resin (to avoid more
} powerful organic solvents like acetone and polypropylene) but the
} manufacturer of the beads said any organic solvent would dissolve the
} beads.
}
} Anyone have experience using PS beads and embedding?
}
} Thanks.
}
} --
} John J. Bozzola, Ph.D., Professor & Director of IMAGE
} Integrated Microscopy & Graphics Expertise
} Southern Illinois University
} 750 Communications Drive
} Carbondale, ILÂ 62901
} Phone: 618-453-3730
}
}
} ==============================Original Headers==============================
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} 6, 18 -- Subject: TEM stability of polystyrene beads
} 6, 18 -- From: John Bozzola {bozzola-at-siu.edu}
} 6, 18 -- To: MSAListserver {Microscopy-at-microscopy.com}
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Michal Jarnik
NICHD, CBMP
Bldg 18T, Rm. 101
Tel. 301-594-3944



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From: jehrman-at-mta.ca
Date: Thu, 30 Jun 2011 08:52:38 -0500
Subject: [Microscopy] microscopes on money

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Good Morning

I can confirm that polystyrene beads will dissolve. The research
specimens that we processed using Acetone and Procure 812 resin
demonstrated this. However, the loss of the beads (FLUORESBRITE PLAIN
YG 2.00 MICRON MICROSPHERES) was not a concern with this project as the
fluorescent yellow of the beads worked well to demonstrate the target
area for dissection; and then the unmistakable uniformly round spaces in
the infiltrating inflammatory cells was clearly visible in the semi-thin
resin sections. Researcher was happy. As always it depends on what the
researcher is seeking to demonstrate.

(No commercial associations)
Regards
Naomi

Naomi McCallum
Supervising Scientist, EM Unit, Anatomical Pathology
Pathology Queensland


} } } {connellyps-at-nhlbi.nih.gov} 6/30/2011 5:47 am } } }



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John,

You might want to remember that some of the Epon substitutes will also
dissolve PS.
I have used LX-112 from Ladd and it works well with PS. I assume that
there are others that do also but EMbed-812 will not work with it for it
melted my small polystyrene petri dishes.

I have no financial ties to the above products but simply use both.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not
represent the NIH. This message is not confidential and can be freely
shared and reproduced.

________________________________
X-from: {bozzola-at-siu.edu}
Reply-To: {bozzola-at-siu.edu}

While there is no doubt that acetone dissolves plastics, I would be surprised if
ethanol would do any harm to them.
I would recommend bypassing the acetone step and directly embedding in
ethanol/resin mixture after dehydration.

Just be sure to leave no trace of ethanol in the resin.

In any case it is quite straightforward to test the resistance of the beads to
ethanol or anything else: leave them in ethanol overnight and check by SEM.

Best regards,

Stephane

 
----- Original Message ----
X-from: "naomi_mccallum-at-health.qld.gov.au" {naomi_mccallum-at-health.qld.gov.au}
To: nizets2-at-yahoo.com
Sent: Thu, June 30, 2011 12:35:23 AM

Good Morning

I can confirm that polystyrene beads will dissolve.  The research
specimens that we processed using Acetone and Procure 812 resin
demonstrated this.  However, the loss of the beads (FLUORESBRITE PLAIN
YG 2.00 MICRON MICROSPHERES) was not a concern with this project as the
fluorescent yellow of the beads worked well to demonstrate the target
area for dissection; and then the unmistakable uniformly round spaces in
the infiltrating inflammatory cells was clearly visible in the semi-thin
resin sections. Researcher was happy.  As always it depends on what the
researcher is seeking to demonstrate.

(No commercial associations)
Regards
Naomi

Naomi McCallum
Supervising Scientist, EM Unit, Anatomical Pathology
Pathology Queensland


} } } {connellyps-at-nhlbi.nih.gov} 6/30/2011 5:47 am } } }



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John,

You might want to remember that some of the Epon substitutes will also
dissolve PS.
I have used LX-112 from Ladd and it works well with PS. I assume that
there are others that do also but EMbed-812 will not work with it for it
melted my small polystyrene petri dishes.

I have no financial ties to the above products but simply use both.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not
represent the NIH. This message is not confidential and can be freely
shared and reproduced.

________________________________
X-from: {bozzola-at-siu.edu}
Reply-To: {bozzola-at-siu.edu}

Has anyone else seen the back of the new Canadian "polymer" C-note:

http://farm4.static.flickr.com/3116/5852863462_50bd76cd27_o.jpg

This is clearly a Zeiss AxioImager scope. Ah well, I guess we Canadians
have a monarch of another country on change and other bills, why not a
German scope on the $100.

JME

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

If at first you don't succeed, you must be a programmer.


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From: jmircheski-at-us.es
Date: Thu, 30 Jun 2011 11:51:55 -0500
Subject: [Microscopy] Semi-automatic quantification of synaptic vesicles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear all,

I am in a big (read urgent) need of a plug-in for ImageJ (or any other image
processing software) that can help me quantify synaptic vesicles. I need to
count vesicles and in the same time get one of these parameters: diameter or
radius or area of the same vesicle. Automatic processing of images involving
thresholding does not recognize many of the vesicles, so I’d like to have
something like a semi-automatic process: I define where the vesicle is (e.g.
by clicking in the centre), and the software does the rest. Does anybody
know if there is any software/plug-in/macro for ImageJ that can help me? Or
any other software (preferentially free)?

I am speaking of quantifying hundreds of vesicles in tens of end-plates...

Thanks in advance for the help.

Warmest regards at 42ºC from Seville,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es




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From: rcsencsits-at-lbl.gov
Date: Thu, 30 Jun 2011 12:26:49 -0500
Subject: [Microscopy] stability of polystyrene

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If you wish to test what solvents dissolve polystyrene try a low cost
styrofoam cup. It dissolves is seconds if you try to fill it with
acetone--tried it in chem lab decades ago, the lesson sticks.
Since many alcoholic beverages are served in #6 PS cups, alcohol should be fine.

Have a great day!
Roseann


Roseann Csencsits, PhD
Supervising Donner TEM Facility
Lawrence Berkeley Lab 01-365
1 Cyclotron Road
Berkeley, CA 94720

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From: jlagarto-at-cirklo.org
Date: Thu, 30 Jun 2011 13:07:32 -0500
Subject: [Microscopy] Agendo resource scheduler

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Dear all,


For the ones looking for a resource scheduler... Cirklo is proud to announce the release of Agendo v1.5.

Agendo is an open source (EUPL) resource scheduler developed by Cirklo at the Gulbenkian Institute of Science. This software was thought and partially developed
by core facility managers with accumulated years of experience in research. This software is running in our facility for almost 2 years and we are continuously developing it
so that other facilities can use it as well.

You can download it from
http://github.com/Cirklo/CirkloPackage

just follow these instructions
https://github.com/Cirklo/CirkloPackage/blob/master/INSTALL.txt

Contact us if you need help during the installation.

You can visit our demo site at
http://www.cirklo.org/agendo_demo.php

USERNAME: admin
PASSWORD: agendo

Go tohttp://www.cirklo.org/agendo_help.php to learn how to work with Agendo.

We can also set up and host a database for you in our server under a fee. Contactinfo-at-cirklo.org for more information.

Some features:

• Resource dependent configuration
• Three different booking methods: pre-scheduling with administrator confirmation, pre-scheduling with user confirmation in situ and direct scheduling
• Waiting lists with email or SMS warnings if the schedule is available
• Personal calendar - each user is allowed to view past and future entries for all resources with permission to use
• Warnings via email or SMS to the equipment admin if resource is scheduled but not used
• Session comments directly sent through email to the equipment administrator
• Color scheme that provides direct information about the equipment's usage
• Easy invoicing reports
• Static and dynamic reports (e.g. resource usage, unconfirmed entries, invoicing, most used resource, etc...)
• Quick integration with Ekrano for live remote monitoring of equipment usage
• Quick access to feature videos and help

More details inwww.cirklo.org

Best regards,
João Lagarto

Equipment management Unit
Instituto Gulbenkian de Ciência
Rua da Quinta Grande, 6
2780-156 Oeiras
Phone: + 351 214 464 607



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 30 Jun 2011 20:12:47 -0500
Subject: [Microscopy] viaWWW:Perl's Fe stain with DAB

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Email: smythen-at-musc.edu Name: Nancy Smythe

Organization: Medical University of SC

Title-Subject: [Filtered] Perl's Fe stain with DAB

Message: I am looking for a protocol for enhancing Perl's staining with
DAB. If anyone is currently doing this please contact me. It is to be on
5 micron paraffin sections.

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From: W.Muss-at-salk.at
Date: Fri, 1 Jul 2011 01:43:54 -0500
Subject: [Microscopy] Re: Perl's Fe stain with DAB

Contents Retrieved from Microscopy Listserver Archives
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Good morning,
dear Nancy,

interesting matter....(:-)) despite not really an EM-task (but could be used also for such....) therefore:

My personal proposal: perhaps try

oo {Straightforward histochemical staining of Fe by the adaptation of an old-school technique
Identification of the endodermal vacuole as the site of Fe storage in Arabidopsis embryos}
by Hannetz Roschzttardtz, Geneviève Conéjéro, Catherine Curie, and Stéphane Mari

at: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2835959/

Plant Signal Behav. 2010 January; 5(1): 56–57 © 2010 Landes Bioscience
Only in Case you are not able to open the article at the given address/URL:

oo Excerpt of used methods in that paper on Arabidopsis embryos (==} embedding in KULZER Technovit resin):

o Perls Stain and DAB/H2O2 Intensification
The embryos were dissected from seeds previously imbibed in distilled water for 3 h, using a binocular magnifying lens. The isolated embryos were vacuum infiltrated with equal volumes of 4% (v/v) HCl and 4% (w/v) K-ferrocyanide (Perls stain solution) for 15 min and incubated for 30 min at room temperature (Stacey et al., 2008). The DAB intensification method is described in Meguro et al. (2007). After washing with distillated water, the embryos were incubated in a methanol solution containing 0.01 m NaN3 and 0.3% (v/v) H2O2 for 1 h, and then washed with 0.1 m phosphate buffer (pH 7.4). For the intensification reaction the embryos were incubated between 10 to 30 min in a 0.1 m phosphate buffer (pH 7.4) solution containing 0.025% (w/v) DAB (Sigma), 0.005% (v/v) H2O2, and 0.005% (w/v) CoCl2 (intensification solution). The reaction was stopped by rinsing with distilled water.The in vitro assay for FeII and FeIII was performed as follows: 1 mL of Perls stain solution was mixed with either 2 μL of FeSO4 or FeCl3 at 35 mm and, when necessary, 10 μL of a 57 mm ascorbic acid solution to reduce FeIII. The obtained solutions were dot blotted on a nitrocellulose membrane and further stained with DAB/H2O2 as described earlier for the staining of embryos. For Fe specificity assay of Perls/DAB stain (Fig. 1B, d) 1 mL of Perls stain solution was mixed with either 2 μL of FeSO4, FeCl3, CuSO4, MnCl2, or ZnCl2 at 35 mm, these solution were centrifuged, the supernantant discarded, and 1 mL of intensification solution was added and the tubes were vortexed. Finally, 2 μL were dot blotted on a nitrocellulose membrane.

o In Situ Perls/DAB/H2O2 Intensification
The isolated embryos were vacuum infiltrated with fixation solution containing 2% (w/v) paraformaldehyde, 1% (v/v) glutaraldehyde, 1% (w/v) caffeine in 100 mm phosphate buffer (pH 7) for 30 min and incubated for 15 h in the same solution. The fixated embryos were washed with 0.1 m phosphate buffer (pH 7.4) three times, and dehydrated in successive baths of 50%, 70%, 90%, 95%, and 100% ethanol, butanol/ethanol 1:1 (v/v), and 100% butanol. Then, the embryos were embedded in the Technovit 7100 resin (Kulzer) according to the manufacturer's instructions and thin sections (3 μm) were made. The sections were deposited on glass slides that were incubated for 45 min in Perls stain solution. The intensification procedure was then applied as described above.Microscopic Analysis
The embryos stained with Perls/DAB/H2O2 were dehydrated in successive baths of 50%, 70%, 90%, 95%, and 100% ethanol, butanol/ethanol 1:1 (v/v), and 100% butanol. Then, the embryos were embedded in the Technovit 7100 resin (Kulzer) according to the manufacturer's instructions and thin sections (7 μm) were made.

oo Lit. References in that paper concerning the methods used:

Meguro R, Asano Y, Odagiri S, Li C, Iwatsuki H, Shoumura K (2007) Nonheme-iron histochemistry for light and electron microscopy: a historical, theoretical and technical review. Arch Histol Cytol 70 1–19.
[PubMed: http://www.ncbi.nlm.nih.gov/pubmed/17558140]

Stacey MG, Patel A, McClain WE, Mathieu M, Remley M, Rogers EE, Gassmann W, Blevins DG, Stacey G (2008) The Arabidopsis AtOPT3 protein functions in metal homeostasis and movement of iron to developing seeds. Plant Physiol 146 589–601. [PMC free article: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2245856/]
[PubMed: http://www.ncbi.nlm.nih.gov/pubmed/18083798 ]


or even going back "to the roots":
Histochemistry. 1980;66(3):239-44.
["Diaminobenzidine black" as a new histochemical demonstration of exogenous iron (author's transl)].
[Article in French]
Nguyen-Legros J, Bizot J, Bolesse M, Pulicani JP.
Abstract
A new reaction for the histochemical demonstration of exogenous iron, used as a tracer for the study of connectivity in the central nervous system, is described. It consists of, first, the conversion of iron into Prussian blue, which acts secondarily as a catalyst for the oxidation of diaminobenzidine by hydrogen peroxide. The oxidized diaminobenzidine precipitates by polymerization and gives rise to a brown-colored insoluble reaction product. This reaction has a strikingly better sensitivity and contrast than the classical Perls's reaction.
PMID:7399970[PubMed - indexed for MEDLINE==} http://www.ncbi.nlm.nih.gov/pubmed/7399970]


Best wishes, good luck and regards,

Wolfgang MUSS
EM-Lab
SALK-LKH & PMU Salzburg
AUSTRIA


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Von: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
Gesendet: Freitag, 01. Juli 2011 03:17
An: Muß Wolfgang
Betreff: [Microscopy] Perl's Fe stain with DAB

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I am looking for a protocol for enhancing Perl's staining with DAB.
If anyone is currently doing this please contact me. It is to be on 5 micron paraffin sections.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 5 Jul 2011 19:03:03 -0500
Subject: [Microscopy] viaWWW:Remote instrumentation

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

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Email: zwang-at-genectr.hunter.cuny.edu Name: Zhong Wang

Organization: Hunter College

Title-Subject: [Filtered] Remote instrumentation

Message: My name is Zhong Wang working for the Bio-Imaging Facility at
the Hunter College, CUNY. At present we are working on a remote
instrumentation project for microscopic imaging. This project aims at
manipulating microscopic systems from remote sites via the fast internet
connection and supporting web conferencing software. By using proper
remote connection protocols, microscopic imaging system can be shared
remotely for research purposes. Now we are looking for partners to set
up networks for tests and demos(we have confocal and spinning-disk
system available for this purpose). The description of our facility can
be found from the following link:
http://biology.hunter.cuny.edu/index.php?option=com_content&view=article&id=44&Itemid=62
If you are interested, please send me an email including:
Contact information
Job Title

Your interest

Scientific Equipment that can be shared
Internet Connection speed
Does the remote end have any video conferencing codes?
Thank you.

Zhong Wang
Bio-imaging Facility
Hunter College of CUNY

Email: zwang-at-genectr.hunter.cuny.edu


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From: connellyps-at-nhlbi.nih.gov
Date: Wed, 6 Jul 2011 19:46:23 -0500
Subject: [Microscopy] Facilities Operation and Management Focus Interest Group News

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

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Email: alline.myers-at-nist.gov Name: Alline Myers

Organization: NIST/CNST/NanoFab

Title-Subject: [Filtered] FIB/SEM/TEM Engineer Position

Message: FIB/SEM/TEM Engineer

NIST/Center for Nanoscale Science and Technology - Gaithersburg, MD 20899

Please send resumes to the address below: Vincent K. Luciani
NanoFab Manager
Center for Nanoscale Science and Technology National Institute of
Standards and Technology 100 Bureau Drive, MS 6201 Gaithersburg, MD
20899-6200 USA

The Nanofabrication Facility (NanoFab) at the Center for Nanoscale
Science and Technology (CNST) of the National Institute of Standards and
Technology (NIST) seeks a highly motivated individual with significant
experience in electron beam imaging and micro-/nano- fabrication
technologies. The individual will have primary responsibility for the
operation of multiple Focused Ion Beam (FIB) systems and a Field
Emission Scanning Electron Microscope (FESEM), including process
development, user training, operation and management of associated
vendor service contracts and service activities. As part of a growing,
state-of-the-art nanofabrication user facility, the successful candidate
will possess a good ability to interact with and train users with skill
levels varying from novice to expert. There will be extensive
opportunities to expand experience into all facets of materials
characterization and nanofabrication.
Skills required:
The individual should have significant practical experience in the FIB
and FESEM operation, and a sound understanding of the associated
analytic techniques such as EDS. Other desirable skills include:
Experience specifically with FEI Helios FIBÂ’s, TEM sample preparation,
TEM operation and Raith (SEM based) E-Beam lithography. The successful
candidate will be proficient in MS Office applications and general
computer use. Also important is a hands-on approach, an ability to work
with a wide range of scientists and engineers, and an enthusiasm for
working on a number of projects simultaneously. The ability to train and
interact well with users is essential to supporting the user program. We
will consider candidates at any appropriate level (pay band ZP I-IV,
salary $21,592-$136,771). Candidates must have at least a bachelorÂ’s
degree in science or engineering, or equivalent education combined with
experience in FIB, SEM and TEM operation.

About the CNST NanoFab
The NanoFab, part of NISTÂ’s Center for Nanoscale Science and Technology
(http://cnst.nist.gov), is a 1,000 m2 Class 100 Cleanroom that contains
new processing and analytical equipment and enables the fabrication of
prototypical nanoscale test structures, measurement instruments,
standard reference materials, electronic devices, magnetic devices, MEMS
and bio-devices critical to NISTÂ’s nanotechnology programs. The NIST
NanoFab is operated as a fee-based shared access user facility. This
means that users from NIST and its partners are permitted to
independently operate the equipment. NanoFab staff members also perform
services for users.

About NIST:
Located in Gaithersburg, MD, just outside Washington DC, the National
Institute of Standards and Technology is a premier high technology
government laboratory. An essential part of NIST's work is to anticipate
the future. Fast-moving sectors such as nanotechnology, quantum
information science, homeland security, information technology, and
advanced manufacturing need sophisticated technical support systems to
flourish and grow. NIST provides that support by continually improving
the U.S. measurement system, developing new technologies, fostering
standards, and providing both the business and technical evaluation
tools needed to produce quality products and organizations. NIST is an
unusual federal agency. Its mission is broad-to promote U.S. innovation
and industrial competitiveness by advancing measurement science,
standards, and technology in ways that enhance economic security and
improve our quality of life. NIST recognizes two key assets: the
diversity of the research programs within its multi-disciplinary
structure and the diversity of the people it employs. Both provide
strength and flexibility to meet the challenges of the future. It is
this combination of talent, energy, commitment, and dedication that will
keep the Agency on the frontiers of science.
Many onsite services are available to our employees: free parking, child
care, employee assistance, cafeterias, credit union, fitness center, and
health services. Additionally, there are employee associations that
sponsor various wellness, recreation, and social activities. For a
summary of benefits available to NIST employees, go to
http://www.nist.gov/hrmd/benefits/summarychart.htm.

The Department of Commerce is an Equal Opportunity Employer. US
citizenship is required.


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From roy.goldup-at-tesco.net Wed Jul 6 18:49:48 2011
Return-Path: {roy.goldup-at-tesco.net}
Received: from mtaout01-winn.ispmail.ntl.com (mtaout01-winn.ispmail.ntl.com [81.103.221.47])
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Message-ID: {20110707004932.C944G.569758.root-at-web09-winn.ispmail.private.ntl.com}

1) The Facilities Operation and Management Focus Interest Group (FOM FIG)
hopes that everyone attending M&M 2011 will make plans to attend the
Symposium/Roundtable that will be presented on Wednesday from 1:30 to 3:30
in Room 109 of the Nashville Convention Center. We think that the topic is
of interest to many.

A14B Equipment Funding Opportunities & Strategies for Success
Owen Mills and Christopher Gilpin
With reduction in government funding it has become increasingly competitive
to obtain grant funding from federal funding agencies. Agency budgets have
been reduced and criteria for successful submissions evolve over time. This
session will consist of a set of informal presentations, in an open forum
format, by representatives from federal funding agencies ­ Office of Naval
Research, National Institutes of Health and the National Science Foundation.
Each speaker will give an overview of their process for announcing funding
opportunities together with a description the application and review
process. Each presentation will specifically address programs and procedures
that pertain to acquiring major equipment that will be relevant to society
members. In addition, speakers will cover strategies to write a successful
application that could improve funding prospects. The open format will
allow for audience participation and the session is planned to be fluid and
dynamic to enable individual components of the grant application process to
be explored in more detail especially where common mistakes are often made.
Invited Speakers:
Debby Sherman, Purdue University
Shahbazian Yassar Reza, Michigan Technological University
Richard Edelmann, Miami University
Isabel Cardenas-Navia, Office of Naval Research
Craig Henderson, National Science Foundation
Christina Liu, National Institutes of Health

2) Any day now our Facilities Operation and Management Focus Interest Group
web page will be activated. We will give you the link and information very
soon. [We hope!]

3) The FOM FIG welcomes new members and if you think you are a member and
have not received a previous message concerning the symposium and the Annual
Luncheon and Business Meeting of the Facilities Operation and Management
Focus Interest Group (FOM FIG) your membership has expired. You can join by
contacting the MSA business office to pay the $10.00 FIG fee. Please also
contact Pat Connelly at {psconnelly-at-gmail.com} if you are joining now or
have questions.

4) FOM FIG Members shall have their Annual Luncheon and Business Meeting
this year during M&M 2011 on Tuesday August 9. The Lunch will be provided at
no cost to our members. There is however a need for you to reply to Pat
Connelly as soon as possible ­ deadline is July 15th so do NOT hit ³Reply²
but please email {psconnelly-at-gmail.com} for your Reservation must be made
before then.

Owen Mills, Leader of the FOM FIG, will lead the meeting.
During the Business Meeting we will be having Elections for a Leader-Elect
to follow Tom Williams, soon to become the Leader. We are also in need of a
Secretary. The current officers request that you nominate yourself to serve
in either of these two capacities by contacting Pat Connelly. There is a lot
of cooperation between past office holders and the newly elected and there
is time to get familiar with the duties. You will not be thrown to the
wolves so to speak.

The discussion topic to follow the business meeting is:
Deferred Maintenance: Core Facilities and the implications of aging
infrastructure in the era of shrinking budgets
-what are the short-term and long-term problems for Labs
-innovative solutions and "band-aid" fixes

See you in Nashville!

Owen P. Mills, FOM FIG Leader
Pat Connelly, FOM FIG Secretary
{psconnelly-at-gmail.com}



==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 6 Jul 2011 20:07:06 -0500
Subject: [Microscopy] viaWWW:JEOL 840A SEM surplus

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

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Email: Edward.Duke-at-sdsmt.edu Name: Ed Duke

Organization: South Dakota School of Mines and Technology

Title-Subject: [Filtered] JEOL 840A SEM surplus

Message: JEOL 840 SEM with Oxford ISIS EDS and heating/cooling stage is
available through online auction site PublicSurplus.com

http://www.publicsurplus.com/sms/auction/view?auc=584994

Auction item #584994

See site for details.

Location Rapid City, South Dakota, USA.

Inquiries can be addressed to edward.duke-at-sdsmt.edu



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From: tomxlawson-at-gmail.com
Date: Thu, 7 Jul 2011 02:34:20 -0500
Subject: [Microscopy] Any way to concentrate the bacteria to about 1 ul for observation on

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Microscopists,

Do you know any way to concentrate the bacteria to about 1 ul for
observation on a slide-well?

I have a 1 ml aqueous solution containing about 10 bacteria cells. So
that I can observe the bacteria cells, I am centrifuging the 1 ml,
removing the supernatant and spotting 10 ul to a 0.6 mm diameter
slide-well before staining with DAPI.

Unfortunately the 10 ul volume and well area is too large at 60X
objective to quickly find the stained bacteria. It would be much
better I centrifuge the volume still smaller to 1 ul, but this is
difficult to spot without losing some of the bacteria. I have tried
filtering, but the filter area is still too large for rapid detection.

Regards,

Tom

--
Tom Lawson
PhD Student
tomxlawson-at-gmail.com
Macquarie University
NSW, 2109
Australia

==============================Original Headers==============================
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7, 24 -- Message-ID: {CA+UEVcvVPGmbhskzdsqWBBun823-Ac29dv0eUdhQVZ=OpKxwMA-at-mail.gmail.com}
7, 24 -- Subject: Any way to concentrate the bacteria to about 1 ul for observation on
7, 24 -- a slide-well?
7, 24 -- From: Tom Lawson {tomxlawson-at-gmail.com}
7, 24 -- To: Microscopy-at-Microscopy.Com
7, 24 -- Content-Type: text/plain; charset=ISO-8859-1
==============================End of - Headers==============================




From: dave-at-boeckeler.com
Date: Fri, 8 Jul 2011 17:54:59 -0500
Subject: [Microscopy] High Pressure Freezer User Group Meeting

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Microscopists,

If you are planning to attend the forthcoming M&M 2011
meeting in Nashville, and have an interest in High
Pressure Freezing, please consider attending the
following user group meeting:

High Pressure Freezer User Group Meeting

Tuesday Aug 9th, 2011
6:00pm until around 8:00pm
Gospel Room, Renaissance Nashville Hotel
611 Commerce Street
Nashville
(adjacent to the Convention Center)

Meeting Philosophy: An informal, relaxed discussion
group sharing experiences with high pressure freezing
of biological materials. Although this meeting is
primarily focused on experiences with the HPM 010 High
Pressure Freezing Machine, it is open to anyone with
an interest in cryoimmobilization by high pressure
freezing or with experiences to share using other
freezing devices and associated cryo techniques such
as freeze substitution.

Meeting Co-Chairs: Joe Austin, PhD
Director-Advanced
Electron Microscopy Facility
Biological
Science Division
University of Chicago

Frank Macaluso
Director -
Analytical Imaging Facility
Albert Einstein
College of Medicine
Bronx, NY

Meeting Agenda:

6:00pm Welcome & Introduction

6:15pm - 6:45pm "How I learned to Stop Worrying
and Trust my TEM Images" - a brief introduction to
high pressure freezing and freeze substitution
Joe Austin, PhD

6:45pm - 7:15pm " Neutral lipids: a moving target
for preservation in freeze substitution of plant cells"
R. Howard Berg, PhD

Director-Integrated Microscopy Facility
Danforth Plant
Science Center
St. Louis

7:15pm - 8:00pm (open): Open discussion

Complimentary soft drinks, light refreshments, coffee
and tea will be served plus a cash bar will be open
during the meeting serving wine, beer and cocktails.

Please drop me an email if you would like to reserve a
place.

See you in Nashville.

Dave Roberts
Director-RMC Products
Boeckeler Instruments Inc
4650 S. Butterfield Drive
Tucson, Arizona 85714
Tel: 520-745-0001
Fax: 520-745-0004
www.rmcproducts.com
dave-at-boeckeler.com


==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 8 Jul 2011 22:37:44 -0500
Subject: [Microscopy] viaWWW:Durst varicontroller

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: yamawaki-at-stanford.edu Name: Ruth Yamawaki

Organization: Stanford University

Title-Subject: [Filtered] Durst varicontroller wanted

Message: I still live in the dark ages of printing micrographs. My
Durst Varicontrol is no longer varicontroling. I know it is not the bulb
because I have tried two different new bulbs. If you have a Durst
Varicontrol available please contact me. The enlarger is Durst Femokit.


Thank you.

Ruth Yamawaki
Stanford University
Department of Comparative Medicine
Palo Alto, Ca
650 723-3457

Login Host: 171.65.84.72
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==============================Original Headers==============================
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From: stefan.diller-at-t-online.de
Date: Sat, 9 Jul 2011 01:32:09 -0500
Subject: [Microscopy] Re: viaWWW:Durst varicontroller

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Ruth,
if you are still doing b+w prints and need to repair stuff, why not add little comfort and changing to a better controller and get
results faster, easier and better looking?
I am using the splitgrade-system. It fits on a lot of colour or multigrade enlargers but works best when the enlarger head is
re-worked containing motorized dichroitic filters (you can bring in the filters manually also...).
See more at
http://www.heilandelectronic.de/html/english/products/splitgrade_main.htm

Just a satisfied customer.


Best wishes,
Stefan

-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 09.07.11 05:41, schrieb microscopylistserver-noreply-at-microscopy.com:
} ----------------------------------------------------------------------------
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} This Question/Comment was submitted to the Microscopy Listserver
} using the WWW based Form at http://www.microscopy.com/MLFormMail.html
} ---------------------------------------------------------------------------
} Remember this posting is most likely not from a Subscriber, so when
} replying please copy both yamawaki-at-stanford.edu as well as the
} MIcroscopy Listserver
} ---------------------------------------------------------------------------
}
} Email: yamawaki-at-stanford.edu Name: Ruth Yamawaki
}
} Organization: Stanford University
}
} Title-Subject: [Filtered] Durst varicontroller wanted
}
} Message: I still live in the dark ages of printing micrographs. My
} Durst Varicontrol is no longer varicontroling. I know it is not the bulb
} because I have tried two different new bulbs. If you have a Durst
} Varicontrol available please contact me. The enlarger is Durst Femokit.
}
}
} Thank you.
}
} Ruth Yamawaki
} Stanford University
} Department of Comparative Medicine
} Palo Alto, Ca
} 650 723-3457
}
} Login Host: 171.65.84.72
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
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==============================Original Headers==============================
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7, 22 -- Received: from mailout03.t-online.de (mailout03.t-online.de [194.25.134.81])
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From: jsb43-at-cam.ac.uk
Date: Mon, 11 Jul 2011 07:51:13 -0500
Subject: [Microscopy] 229 Th transition in EELS?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,

I've just been reading about an experiment exploring the use of a 229 Th
(thorium) *nuclear* transition at 7.6 eV that might form the basis of a
precise clock (NewScientist website).

However, what intrigued me was this: has this transition ever been seen in
the electron microscope (band-gap region)? If so, would it work well as the
basis of crystal-field splitting measurements, and would its excitation
depend sensitively on the excitation of the 1s Bloch states?

Best, Jon


==============================Original Headers==============================
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From: vray-at-partbeamsystech.com
Date: Mon, 11 Jul 2011 12:16:07 -0500
Subject: [Microscopy] Tutorial or "How To" guide for FEI "Auto Script" languate

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

Did anyone take a trouble of putting together some kind of tutorial, or
any other form of programing aid, or a cheat-sheet for FEI AutoScript
language? I am looking into the project which will require automation,
and could use some help in the beginning.

We have the "AutoScript Technical Note" which came with the tool, which
is helpful, but that is rather a reference then the manual or a tutorial...

Thanks everyone beforehand,
--
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

==============================Original Headers==============================
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From: patpxs-at-gmail.com
Date: Mon, 11 Jul 2011 13:04:14 -0500
Subject: [Microscopy] MT-2 Free To Good Home

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Listers,

I have 2 MT-2s that need a home. I'm not sure if they still work but
if you want them and are willing to pick them up or pay for shipping
you can have them.

First come, first served. These are "As Is".

Contact me if you are interested.

Paula :-)

--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#251M, Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.2091


==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 11 Jul 2011 21:29:34 -0500
Subject: [Microscopy] viaWWW:Bacterial Specimen Dehydration Help for SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: benjamin.brezler-at-gmail.com Name: Benjamin Brezler

Organization: San Francisco State University

Title-Subject: [Filtered] Bacterial Specimen Dehydration Help for SEM

Message: I am having some difficulty with dehydration of my specimens,
and help I could get would be much appreciated.

I am working with a Gram-negative, motile, alpha-proteobacteria. My
general protocol is as follows;
1) Fix for 15min. at room temp. with 2.5% glutaraldehyde in a 0.1M
Sodium Cacodylate solution (pH~7).
2) Dehydrate with a ethanol series--30%, 50%, 70%, 100% (X3), then
critical point dry.

Unfortunately, my bacteria are coming out wrinkled, shriveled, and just
generally improperly dehydrated.

I have tried several permutations of this protocol including fixing at
in the fridge for an hour, post-fixing with 1% Osmium Tetroxide for
30min. before the dehydration process, but I haven't found anything that
has really helped.

Does anyone have advice/experience with this sort of preparation?


Thanks,
Benjamin

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From: tina-at-pbrc.hawaii.edu
Date: Mon, 11 Jul 2011 22:03:33 -0500
Subject: [Microscopy] Re: viaWWW:Bacterial Specimen Dehydration Help for SEM

Contents Retrieved from Microscopy Listserver Archives
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Hi, Ben-

When I have problems, I buckle down and do what Dennis Kunkel does (Google
his stuff to see beautiful microbes):

Your fix is OK, wash well, postfix 1% OsO4, wash with cacodylate again,
then (I think this is the trick) dehydrate in ethanol, 10%, 20%, 30%, 50%,
70%, 85%, 95%, two times each dilution; first time for 5 in, second time
for 15 min. Don't rush this part.

When in 70% ethanol transfer to filter holder (or smooth lens tissue
origami packets).

Dehydrate in 100% ethanol 3 x 10 min, then critical point dry

Good luck!
Aloha,
Tina
}
} Message: I am having some difficulty with dehydration of my specimens,
} and help I could get would be much appreciated.
}
} I am working with a Gram-negative, motile, alpha-proteobacteria. My
} general protocol is as follows;
} 1) Fix for 15min. at room temp. with 2.5% glutaraldehyde in a 0.1M
} Sodium Cacodylate solution (pH~7).
} 2) Dehydrate with a ethanol series--30%, 50%, 70%, 100% (X3), then
} critical point dry.
}
} Unfortunately, my bacteria are coming out wrinkled, shriveled, and just
} generally improperly dehydrated.
}
} I have tried several permutations of this protocol including fixing at
} in the fridge for an hour, post-fixing with 1% Osmium Tetroxide for
} 30min. before the dehydration process, but I haven't found anything that
} has really helped.
}
} Does anyone have advice/experience with this sort of preparation?
}
}
} Thanks,
} Benjamin
}
} Login Host: 98.234.237.9
} ---------------------------------------------------------------------------
}
}
}
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}

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: oshel1pe-at-cmich.edu
Date: Tue, 12 Jul 2011 07:15:37 -0500
Subject: [Microscopy] Re: viaWWW:Bacterial Specimen Dehydration Help for

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Benjamin,

Your fix seems short to me - I generally use 30-60 minutes in 1% to
1.25% glut in buffer. The dehydration definitely needs expanding -
especially the lack of 90% and 95% EtOH.
But.
Mostly, what do you mean by "critical point dry"? That is, what is
your exact procedure? You have to think of the CPD in the same way as
you do the dehydration. The EtOH must be replaced within the cells
with liquid CO2, which requires flushing and soaking cycles,
analogous to the dehydration steps used to substitute H2O with EtOH.
I generally use 5, 5 minute soaks when doing bacteria on membranes.
If I'm doing cells on agar, I treat them as tissue - the agar has to
be dried properly to maintain the relationships between the cells
(they're a community, not just a bunch of bugs).
The time and number of steps varies with the cells, the community
(how many different types, what kind of biofilm, etc.), and is pretty
much empirical.
Have you tried drying from HMDS (hexamethyldisilizane)? That can work
very nicely. And some bacteria will air dry from 100% EtOH or acetone
just fine.

Phil

} Email: benjamin.brezler-at-gmail.com Name: Benjamin Brezler
}
} Organization: San Francisco State University
}
} Title-Subject: [Filtered] Bacterial Specimen Dehydration Help for SEM
}
} Message: I am having some difficulty with dehydration of my specimens,
} and help I could get would be much appreciated.
}
} I am working with a Gram-negative, motile, alpha-proteobacteria. My
} general protocol is as follows;
} 1) Fix for 15min. at room temp. with 2.5% glutaraldehyde in a 0.1M
} Sodium Cacodylate solution (pH~7).
} 2) Dehydrate with a ethanol series--30%, 50%, 70%, 100% (X3), then
} critical point dry.
}
} Unfortunately, my bacteria are coming out wrinkled, shriveled, and just
} generally improperly dehydrated.
}
} I have tried several permutations of this protocol including fixing at
} in the fridge for an hour, post-fixing with 1% Osmium Tetroxide for
} 30min. before the dehydration process, but I haven't found anything that
} has really helped.
}
} Does anyone have advice/experience with this sort of preparation?
}
}
} Thanks,
} Benjamin

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: jacques.faerber-at-ipcms.u-strasbg.fr
Date: Tue, 12 Jul 2011 08:25:27 -0500
Subject: [Microscopy] Cambridge Stereoscan 100 SEM electronics avaible

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all

We have a Cambridge Stereoscan 100 SEM (~1982) which was dismantled a
few years ago, the "hardware" part dealing now as model of how a SEM is
built, in the entry hall of our EM facility.

We have still the electronics laying in the way, which must be discard
soon and is so available if someone is interested. It's complete exept
the turbo pump controler.

Please contacte me, or caroline.habold-at-iphc.cnrs.fr, but please before
july 22. I'll be away after that.
It's located in Strasbourg, France, and of coarse is are free of charge
expet shipping and packing at your charge. It will be discard beginning
september.

Best regards

Jacques

--
Veuillez prendre note de la nouvelle adresse mail.

J. Faerber
IPCMS-DSI
Institut de Physique et Chimie des Matériaux de Strasbourg
Département Surfaces et Interfaces
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail Jacques.Faerber-at-ipcms.unistra.fr


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From: duleyml-at-muohio.edu
Date: Tue, 12 Jul 2011 10:46:13 -0500
Subject: [Microscopy] need a BSE detector for JEOL 840

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Good morning all,

We are looking for a BSE detector for a JEOL840 A (or any backscatter
detector that might work). One of our students raised a sample just
a little too high! If anyone has one sitting around gathering dust
they would be willing to part with we would be forever grateful.

TIA

Matt Duley



Matthew L. Duley

Microscopy Specialist
Center for Advanced Microscopy & Imaging
9 Upham Hall
Miami University
Oxford, Ohio 45056
513.529.4164
FAX 513.529.4243
Duleyml-at-muohio.edu


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From: bozzola-at-siu.edu
Date: Tue, 12 Jul 2011 11:10:13 -0500
Subject: [Microscopy] Re: Bacterial Specimen Dehydration Help for

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

To add to what Tina and Phil contributed:

I do an extended fixation in glut (1 day) and Os (1-2 days), followed
by dehydration in EtOH, like Tina describes.

Then, a long exchange of CO2 in the CPD device, like Phil mentions.

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901


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From: barnesa-at-umn.edu
Date: Tue, 12 Jul 2011 15:30:50 -0500
Subject: [Microscopy] Re: Bacterial Specimen Dehydration Help for SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ben,
Joining in the chorus of excellent responses you've gotten so far,
here are a couple of thoughts:

} 1) Fix for 15min. at room temp. with 2.5% glutaraldehyde in a 0.1M
} Sodium Cacodylate solution (pH~7).

In my hands, short ( {4 hrs -at- RT) fixations of bacteria can cause
later shrinkage problems. Admittedly I usually work with Gram-positives,
but even Gram-negative bugs often need at least an overnight fix. If
you're trying to maintain any extracellular matrix, this problem becomes
even more acute - 16-24 hrs at RT is where I usually start.

Though not usually an issue with single bacterial cells, the
osmolality of your fix is pretty low, too.

} 2) Dehydrate with a ethanol series--30%, 50%, 70%, 100% (X3), then
} critical point dry.

As other commentators have noted, this EtOH series is short and
pretty abrupt: I've moved toward more steps rather than fewer (I
typically do eight gradations - 25% -} 50% -} 70% -} 85% -} 95% x2 -}
100% x2). Even this may not be enough: I'm considering moving to 10
stages (adding an early (~10%) and a late (~90%)) for my most
morphologically important specimens.

Tina also suggested lengthening the transition times - while it
hasn't helped my specific preps, it is an excellent point.

Overall, I think you may be trying to rush your preps. Good SEM prep
takes lots of time (and figuring out the most efficient prep for your
particular sample often takes even longer).

Aaron

----------------------------
Aaron Barnes
Dunny Lab - Dept of Microbiology
University of Minnesota

} Unfortunately, my bacteria are coming out wrinkled, shriveled, and just
} generally improperly dehydrated.
}
} I have tried several permutations of this protocol including fixing at
} in the fridge for an hour, post-fixing with 1% Osmium Tetroxide for
} 30min. before the dehydration process, but I haven't found anything that
} has really helped.
}
} Does anyone have advice/experience with this sort of preparation?
}
}
} Thanks,
} Benjamin
}
} Login Host: 98.234.237.9
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
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==============================Original Headers==============================
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From: graham.d.wright-at-googlemail.com
Date: Wed, 13 Jul 2011 01:26:39 -0500
Subject: [Microscopy] EM - job advert, Electron Microscopy Officer

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Benjamin
Bacteria are known to be tough creatures so it is difficult to comment on
the difficulties you are facing in preparing them for SEM Especially if we
don't see any pictures with your comments describing the problem you see. Of
course in SEM anything can go wrong but in your case, speaking 'sans voir',
it could be a layer of dirt covering the microbes and their fine details.
Which means that you have to do something before fixation or at least before
dehydration..
With best regards
yorgos

Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
eikonika-at-otenet.gr
www.aim.cat
***********************************


----- Original Message -----
X-from: {microscopylistserver-noreply-at-microscopy.com}
To: {eikonika-at-otenet.gr}
Sent: Tuesday, July 12, 2011 5:36 AM

Dear all,

The A*STAR Institute of Medical Biology in Singapore has a position
for an Electron Microscopy Officer available.

Full details for the job are here:
http://sg.dimension.jobsdb.com/career/ad.asp?AC=ASTAR&EC=001&JobID=5013

Brief details:
Electron Microscopy Officer

The IMB Microscopy Unit (IMU) is a core technology platform of IMB
whose mission is to provide optical imaging and image analysis tools
with expertise to facilitate research in molecular, cell and
developmental biology. The recent purchase of both a scanning electron
microscope (SEM) and a transmission electron microscope (TEM) along
with the associated sample preparation equipment will see the
establishment of the Electron Microscopy Suite and will extend the
techniques available in IMU to cover both optical and electron
microscopy.

Duties and responsibilities:

The successful candidate will be involved in all aspects of the
operation of the IMB Electron Microcopy Suite. This will include:
·        Carrying out sample preparation and electron microscopy for researchers
·        Training, advising and supporting users in the application of
electron microscopy techniques to biomedical research; from sample
preparation, through image acquisition, to image processing and
analysis
·        Developing collaborative research projects with research staff
·        Liaising with the manufacturers for repairs, upgrades and
application support
·        Organising international workshops, courses and conferences
·        Trouble-shooting, providing basic maintenance and upkeep of
microscope systems
·        Performing other administrative duties


Regards,
Graham
--
Dr Graham Wright
Microscopy Unit Manager

Institute of Medical Biology
8A Biomedical Grove, #06-06 Immunos, Singapore 138648
W:  http://www.imb.a-star.edu.sg/imu/


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11, 26 -- Subject: EM - job advert, Electron Microscopy Officer
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From: jpchandl-at-mines.edu
Date: Wed, 13 Jul 2011 12:02:58 -0500
Subject: [Microscopy] EDS and photography surplus equipment available

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We have several pieces of excess equipment that will be sent to surplus/salvage within the next couple of weeks. There might be components, such as printed circuit boards, that could be useful. Please let me know by Friday, July 22, if you are interested. No guarantee that any are still functional. These items are free, but packing and shipping costs are the responsibility of the receiver.

Available:
EDS, consoles only:
Tracor Northern 5500
EDAX 9800 Plus
Link eXL II
LogE photographic printer

--John Chandler
EM Lab
Colorado School of Mines
Golden, Colorado
jpchandl-at-mines.edu



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From: PhillipsT-at-missouri.edu
Date: Wed, 13 Jul 2011 14:53:26 -0500
Subject: [Microscopy] Slide holder on LM stage

Contents Retrieved from Microscopy Listserver Archives
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The little arm or finger that holds a microscope slide in place on my XY stage no longer pops back into place. I assume there is some spring inside that has tired out (I know how it feels....). Has anyone ever repaired one of these? This is on a Zeiss Axiophot but the design seems similar to other brands. Tom

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/




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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 13 Jul 2011 17:46:13 -0500
Subject: [Microscopy] viaWWW:CDSEM service needed

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Email: junhe1970-at-yahoo.com Name: Jun

Organization: GCS

Title-Subject: [Filtered] CDSEM service needed

Message: We are a foundry based in Los Angeles area looking for
comercial CD SEM servcie nearby. Most of our samples are 4 inch wafers.
We have our own Hitachi FSEM in house but need a sencond source when it
is down.



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From: patpxs-at-gmail.com
Date: Wed, 13 Jul 2011 17:52:13 -0500
Subject: [Microscopy] MT-2s have a new home

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Everybody,

The MT-2s have been claimed.

Thanks for all the replies, I didn't think there would be thast much
interest in these old but reliable beasties.

Paula :-)

--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#251M, Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.2091


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 14 Jul 2011 08:45:46 -0500
Subject: [Microscopy] viaWWW:Cleaning light microscope lenses

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Email: rfoley-at-uab.edu Name: Robin Foley

Organization: UAB

Title-Subject: [Filtered] Cleaning light microscope lenses

Message: All,

I used to have a company come around and clean my light microscopes
about once per year. Unfortunately, they went out of business and my
microscopes are REALLY dirty!
Do any of you know companies that clean microscopes?
Alternatively - what methods do you use to clean your lenses and digital
camera connections? I'm looking for specifics as I know the lenses are
quite delicate.

If it helps - I've got all Zeiss optical microscopes (5 or 6 different
models).

Thanks!

Robin Foley

Login Host: 138.26.80.193
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From: ben.micklem-at-pharm.ox.ac.uk
Date: Thu, 14 Jul 2011 08:57:46 -0500
Subject: [Microscopy] Re: viaWWW:Cleaning light microscope lenses

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This PDF is useful:
http://www.zeiss.com/industry/general_clean_microscope.pdf

We use the recommended 85% hexane 15% isopropanol cleaning solvent and it
works well.

Ben

--
Research Support Manager
MRC Anatomical Neuropharmacology Unit, Mansfield Road,
Oxford, OX1 3TH, United Kingdom. Telephone: 01865 271866
{http://mrcanu.pharm.ox.ac.uk/}




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From: baskin-at-bio.umass.edu
Date: Thu, 14 Jul 2011 09:27:05 -0500
Subject: [Microscopy] Re: viaWWW:Cleaning light microscope lenses

Contents Retrieved from Microscopy Listserver Archives
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Hi Robin,
IMHO, do it yourself is fine for a critically dirty bit that
you have to clean, but there is nothing like having a professional
work over your scope from lamp to camera. If you are in the New
England area I can recommend Accu-Tech Optical"
{service-at-accutechoptical.com} . I have had great service from them
(based I think in Vermont). I don't recognize "uab" so maybe you are
in Oregon. But fyi.
Tobias

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} Email: rfoley-at-uab.edu Name: Robin Foley
}
} Organization: UAB
}
} Title-Subject: [Filtered] Cleaning light microscope lenses
}
} Message: All,
}
} I used to have a company come around and clean my light microscopes
} about once per year. Unfortunately, they went out of business and my
} microscopes are REALLY dirty!
} Do any of you know companies that clean microscopes?
} Alternatively - what methods do you use to clean your lenses and digital
} camera connections? I'm looking for specifics as I know the lenses are
} quite delicate.
}
} If it helps - I've got all Zeiss optical microscopes (5 or 6 different
} models).
}
} Thanks!
}
} Robin Foley
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--
_ ____ __ ____
/ \ / / \ / \ \ Tobias I. Baskin
/ / / / \ \ \ Biology Department
/_ / __ /__ \ \ \__ 611 N. Pleasant St.
/ / / \ \ \ University of Massachusetts
/ / / \ \ \ Amherst, MA, 01003
/ / ___ / \ \__/ \ ____
www.bio.umass.edu/biology/baskin
Voice: 413 - 545 - 1533 Fax: 413 - 545 - 3243

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From: frank_karl-at-ardl.com
Date: Thu, 14 Jul 2011 11:27:04 -0500
Subject: [Microscopy] Sputtering sputter coaters

Contents Retrieved from Microscopy Listserver Archives
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Hello Everyone,
We're having a little trouble with our Edwards Sputter Coater S150B. It seems it doesn't deposit metal, specifically gold, on samples. We purge with argon and we believe we have the voltages set correctly. Does anyone know of anyone who services these instruments? I'm concern that we're not getting the voltages we thing we are getting.

any suggestions would be welcome!

Thanks!!!

Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



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From: ruscid2-at-rpi.edu
Date: Thu, 14 Jul 2011 11:35:19 -0500
Subject: [Microscopy] Gatan MonoCL3 Mirrors

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello-
I'd like to know if anyone has attempted to:
1) successfully clean the oil off of a dirty mirror without ruining it
2) drilled out a larger hole through the mirror to get a wider field of
view
Please let me know if you have tried these things, even if it didn't work.
Thanks,
Dan Ruscitto

--
Dan Ruscitto, Ph.D.

Laboratory Manager
1W13 Jonsson-Rowland Science Center
Earth& Environmental Sciences
Rensselaer Polytechnic Institute
110 8th St.
Troy NY 12180
Ph: 518-276-2372
Fax: 518-276-2012


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From: vray-at-partbeamsystech.com
Date: Thu, 14 Jul 2011 13:52:08 -0500
Subject: [Microscopy] Re: Gatan MonoCL3 Mirrors

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I routinely clean dielectric-coated front surface mirrors in positioning
interferometers by blowing dust off and solvent/blow dry cleaning with
airbrush. This method may work for metal front-surface mirrors, but I
never tried it.

Instead of drilling larger hole in existing mirror and risking ruining
the instrument, I'd suggest making a replacement with the desired hole
and substituting it for existing. Higher cost, but you have a solid
fallback plan in case something goes wrong.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 7/14/2011 12:36 PM, ruscid2-at-rpi.edu wrote:
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} Hello-
} I'd like to know if anyone has attempted to:
} 1) successfully clean the oil off of a dirty mirror without ruining it
} 2) drilled out a larger hole through the mirror to get a wider field of
} view
} Please let me know if you have tried these things, even if it didn't work.
} Thanks,
} Dan Ruscitto
}

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From: patpxs-at-gmail.com
Date: 2/13/86
Subject: [Microscopy] Field Emission Tips Free

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Listers,

We have in our posession a box of 7 really old Field Emission tips, circa 1986.
Some have the American Optical Corporation label on them. Some have
the FEI label on them.

The FEI labels also have this written on them, by hand:


The AO tips have nothing written on them to indicate how old they are
but they are probably the same vintage if not older. Shoot, when did
AO go out of business?

I'm not even sure what type of EM can use these.

If you are a brave soul and wants to give them a try, let me know.

You pay for shipping, etc. These are "As-Is".

Paula :-)

--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#251M, Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.2091


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From: DRK-at-shcc.org
Date: Thu, 14 Jul 2011 16:26:22 -0500
Subject: [Microscopy] Balzers Control Unit EVM 052 for electron beam gun

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Hello Fellow Microscopists,

I am looking to obtain a Balzers Electron Beam Gun HV power supply designated EVM 052A. My hope is that a few of you may have a moth-balled freeze fracture unit or evaporator that used this controller for the electron beam guns. If you have one of these and would be willing to part with it, would you please contact me to discuss the details? I'll try to make the exchange as easy as possible for you.

Many thanks,

Doug

Douglas R. Keene
Assistant Investigator
Micro-Imaging Center
Shriners Hospital for Children
3101 S.W. Sam Jackson Park Road
Portland, Oregon 97239
Office: 503-221-3434
Cell: 503-819-3600



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From: benada-at-biomed.cas.cz
Date: Fri, 15 Jul 2011 04:15:19 -0500
Subject: [Microscopy] Re: Sputtering sputter coaters

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Frank,
We had similar trouble with our old Polaron sputter-coater. The problem was in the HT cable. The
central lead wire was broken. Fortunately, the cable was available as spare part.

I hope it might help you.

Best regards Oldrich

--
Oldrich Benada
Institute of Microbiology ASCR, v.v.i.
Videnska 1083
142 20 Prague 4

On Thursday 14 of July 2011 18:29:12 you wrote:
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} Hello Everyone,
} We're having a little trouble with our Edwards Sputter Coater S150B. It
} seems it doesn't deposit metal, specifically gold, on samples. We purge
} with argon and we believe we have the voltages set correctly. Does anyone
} know of anyone who services these instruments? I'm concern that we're not
} getting the voltages we thing we are getting.
}
} any suggestions would be welcome!
}
} Thanks!!!
}
} Frank Karl
} Microscopist
} ARDL
} 2887 Gilchrist Road
} Akron, Ohio 44305
} 330-794-6600
}
}
}
} ________________________________
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}
} ==============================Original
} Headers============================== 8, 25 -- From frank_karl-at-ardl.com
} Thu Jul 14 11:27:03 2011
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From: DusevichV-at-umkc.edu
Date: Fri, 15 Jul 2011 10:33:37 -0500
Subject: [Microscopy] Sputtering sputter coaters

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

High voltage connections are quite probable cause. For my new sputter coater I needed to tighten screw to restore HT connection.

Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} -----Original Message-----
} From: benada-at-biomed.cas.cz [mailto:benada-at-biomed.cas.cz]
} Sent: Friday, July 15, 2011 4:16 AM
} To: Dusevich, Vladimir
} Subject: [Microscopy] Re: Sputtering sputter coaters
}
}
}
}
} -----------------------------------------------------------------------
} -----
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
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} -----------------------------------------------------------------------
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}
} Hello Frank,
} We had similar trouble with our old Polaron sputter-coater. The problem
} was in the HT cable. The
} central lead wire was broken. Fortunately, the cable was available as
} spare part.
}
} I hope it might help you.
}
} Best regards Oldrich
}
} --
} Oldrich Benada
} Institute of Microbiology ASCR, v.v.i.
} Videnska 1083
} 142 20 Prague 4
}
} On Thursday 14 of July 2011 18:29:12 you wrote:
} } ---------------------------------------------------------------------
} ------
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5, 29 -- From DusevichV-at-umkc.edu Fri Jul 15 10:33:37 2011
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5, 29 -- Date: Fri, 15 Jul 2011 10:33:34 -0500
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From: knick-at-llu.edu
Date: Fri, 15 Jul 2011 11:22:34 -0500
Subject: [Microscopy] Sputtering sputter coaters

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

If you have been using the sputter coater for a while it may just be
that the target needs to be cleaned. I think that even a thin coat of
hydrocarbons that are barely visible can impede coating. You will still
see the argon plasma and normal current/vacuum readings.

Kevin

-----Original Message-----
X-from: DusevichV-at-umkc.edu [mailto:DusevichV-at-umkc.edu]
Sent: Friday, July 15, 2011 8:42 AM
To: Nick, Kevin (LLU)

High voltage connections are quite probable cause. For my new sputter
coater I needed to tighten screw to restore HT connection.

Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} -----Original Message-----
} From: benada-at-biomed.cas.cz [mailto:benada-at-biomed.cas.cz]
} Sent: Friday, July 15, 2011 4:16 AM
} To: Dusevich, Vladimir
} Subject: [Microscopy] Re: Sputtering sputter coaters
}
}
}
}
}
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-----------------------------------------------------------------------
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}
} Hello Frank,
} We had similar trouble with our old Polaron sputter-coater. The
problem
} was in the HT cable. The
} central lead wire was broken. Fortunately, the cable was available as
} spare part.
}
} I hope it might help you.
}
} Best regards Oldrich
}
} --
} Oldrich Benada
} Institute of Microbiology ASCR, v.v.i.
} Videnska 1083
} 142 20 Prague 4
}
} On Thursday 14 of July 2011 18:29:12 you wrote:
} }
---------------------------------------------------------------------
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13, 22 -- From knick-at-llu.edu Fri Jul 15 11:22:34 2011
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From: john.mitchels-at-gmail.com
Date: Fri, 15 Jul 2011 11:47:20 -0500
Subject: [Microscopy] Mag Com Port Jeol 6300 or 6400 series

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Listers

I am having new found fun with our donated gift of a working ADDA2 on
our 6301F thanks to Frank in the Albert Einstein College of Medicine.
One thing we were wondering is there a com port somewhere in the
inerds of a 6300 or 6400 jeol microscope that we can use to read the
mag externally through the ADDA2. If anyone knows of where we might
find it and on which board. I would appriciate the info. We still are
not sure and Jeol is checking if this microscope has had the necessary
firmware upgrade but they too are unsure of the location of the com
port. So I thought I would ask the list.

Thanks in advance.
John

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From: LettJ-at-ent.wustl.edu
Date: Fri, 15 Jul 2011 17:13:03 -0500
Subject: [Microscopy] SEM: protocol for insects

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello,

I will be processing a set of insect specimens for a group of high
school students. I've spent some time web-searching for SEM protocols
and I haven't found many.

What is the best way to fix insects in the field. (The students will be
doing this with an instructor/supervisor who will later bring the
specimens to me.)

I regularly process mammalian tissue for SEM, but what is the best way
to process insects?

(As part of a twelve-Saturday arts/science program, the students will be
designing and producing interpretive signage for a local National Fish
and Wildlife refuge. The SEM images will be incorporated into the
signage.)

Thank you,

Jaci

Jaclynn Lett
Senior Research Technician
Research Center for Auditory and Vestibular Studies
Department of Otolaryngology
Washington University School of Medicine
660 S Euclid Avenue, Campus Box 8115
St. Louis, MO 63110

Office: 314-747-7257
Fax: 314-747-7230
Email: lettj-at-ent.wustl.edu
Web: http://otocore.wustl.edu



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From: dsherman-at-purdue.edu
Date: Mon, 18 Jul 2011 07:30:29 -0500
Subject: [Microscopy] Gatan cryo workshop-demo

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Folks,

I would like to call your attention to the following information about a
series of 1-day workshops to be held at the Life Science Microscopy Facility
at Purdue university. We have two FEG-SEMs with cryosystems and they are
heavily used. It has turned out to be a very useful technique for many
different types of hydrated samples...not just biological samples.

==================================================================
Cryo SEM Workshop - August 3 - 4, 2011

Hosted by:
The Life Science Microscopy Facility
Purdue University


You are invited to a FREE Cryo SEM Workshop hosted by Purdue University.

This Workshop will cover basic and advanced techniques and methodology for
cryo-imaging. Lectures and lab sessions are coordinated to provide an
interactive educational program for all participants. Attendees are
encouraged to sign up for a one day session and bring specimens for
preparation and imaging using Gatan¹s Alto 2500 systems.

Workshop Program Daily Schedule: August 3rd ­ 4th

9:00 ­ 9:30 Welcome & Introductions
9:30 ­ 10:30 *Marilyn Carey ­ Lecture & Discussion
Basic theory & Cryo SEM Introduction

10:30 ­ Noon Morning Lab Session ­ Hands on
Noon ­ 1:15 Lunch provided
1:15 ­ 3:00 Afternoon Lab Session ­ Hands on
3:00 ­ 3:15 Break
3:15 ­ 5:00 Afternoon Lab Session ­ Hands on

*Marilyn Carey is a Cryo-SEM Specialist at Gatun UK

Bring your own Cryo samples to run on Purdue University Cryo SEM Systems:
NOVA nanoSEM FESEM
Quanta 3D FEG

To register for the one day session please contact:

Steve Nagy - Gatan Central Regional SEM Mgr.
SNagy-at-Gatan.com {mailto:SNagy-at-Gatan.com}
(612) 616-9557

Hotel Accommodations: Hilton Garden Inn 356 East State Street, West
Lafayette, Indiana 47906

Telephone: 765 743-2100 or www.hiltongardeninn.com
{http://www.hiltongardeninn.com}


Regards,
Debby

--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/



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From: sergei2-at-ornl.gov
Date: Mon, 18 Jul 2011 11:40:36 -0500
Subject: [Microscopy] Position opening

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear colleagues

Below please find a description of a postdoctoral position in the areas
of scanning probe and electron microscopy of energy storage materials. I
will greatly appreciate if you can bring it to attention of potential
candidates with experience in SPM of energy materials,
PFM/nanoferroelectrics, in-situ SPM, and in-situ (S)TEM.

https://www3.orau.gov/ORNL_TOppS/Posting/Details/162

Yours

Sergei Kalinin

The Center for Nanophase Materials Sciences (CNMS) at Oak Ridge National
Laboratory (ORNL) is seeking to fill a postdoctoral position in the
field of scanning probe and electron microscopy of energy storage and
conversion systems. The applicant will conduct research on the nanoscale
functionality of energy materials, including Li-ion batteries and fuel
cells. The primary experimental technique is electrochemical strain
microscopy under environmental control. Research will be directed toward
the correlation of macroscopic and nanoscopic parameters and their role
in electrochemical functionality in current and advanced battery
materials. The program will have a strong component of innovative
technique development, namely the development of an in-situ
electrochemical cell to be used with the scanning probe microscope. The
CNMS {http://cnms.ornl.gov/} is a collaborative nanoscience user
research facility established by the Office of Science, U.S. Department
of Energy.

This position requires a Ph.D. in condensed matter physics, materials
science, electrochemistry or a related field. The successful applicant
should have a strong background in scanning probe microscopy in ambient
and liquid environment or in-situ electrochemical experiments using
scanning and transmission electron microscopy, synchrotron methods, or
scanning probe microscopy. Familiarity with numerical data analysis and
customization of control software is a plus (Labview, Matlab). Prior
research work needs to be supported by a strong record of publications
in peer-reviewed journals, preferably as a senior author, and
presentations at scientific conferences. The applicant should be
motivated, safety conscious and possess excellent oral and written
communication skills. The applicant must have the ability to work in a
team, interact effectively with colleagues and external collaborators.
Demonstrated ability to communicate in English to an international
scientific audience is essential.Applicants must have received their
highest degree not more than five years prior to the date of
application, and must complete all degree requirements before starting
the appointment.

*Technical Questions: *For more information about this position, please
contact Dr. Nina Balke (_n2b-at-ornl.gov {mailto:5nm-at-ornl.gov} _) and
reference the ad number listed above in the subject line. Applications
will be accepted until the position is filled.

--
Sergei V. Kalinin
co-Theme Leader for Functional Imaging on the Nanoscale
The Center for Nanophase Materials Sciences
and Materials Sciences and Technology Division
Oak Ridge National Laboratory
Oak Ridge, TN 37922

Adjunct Associate Professor,
Department of Materials Science and Engineering,
University of Tennessee, Knoxville

Phone: (865) 241-0236
http://imaging.ornl.gov


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From: DRK-at-shcc.org
Date: Mon, 18 Jul 2011 12:10:32 -0500
Subject: [Microscopy] Balzers EVM 052 Electron Beam Gun Controller

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Fellow Microscopists,

Last week I posted a "want" for a Balzers EVM052A electron beam gun controller. So far no one has come forward with a working unit, perhaps not surprising since these units were of 1980's vintage. But it did occur to me that my last message might have suggested I was looking for a donation; in fact I am willing to pay $$$ for a working unit. If you have one that you are willing to part with, please respond to me directly so that we can work out the details.

Many thanks,

Doug

Douglas R. Keene
Assistant Investigator
Micro-Imaging Center
Shriners Hospital for Children
3101 S.W. Sam Jackson Park Road
Portland, Oregon 97239
Office: 503-221-3434
Cell: 503-819-3600




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From: patpxs-at-gmail.com
Date: Mon, 18 Jul 2011 12:26:37 -0500
Subject: [Microscopy] FE tips are taken

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Listers,

The FE tips have are taken.

Thanks for all the interest.

Paula :-)

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4, 23 -- Subject: FE tips are taken
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 18 Jul 2011 18:43:59 -0500
Subject: [Microscopy] viaWWW:TEM Biology Position Available

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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at
http://www.microscopy.com/MicroscopyListserver/MLFormMail.html
---------------------------------------------------------------------------
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replying please copy both candace_haigler-at-ncsu.edu as well as the
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Email: candace_haigler-at-ncsu.edu Name: Candace Haigler

Organization: North Carolina State University

Title-Subject: [Filtered] TEM Biology Position Available

Message: A postdoc or other research associate position is available at
North Carolina State University, Raleigh, NC in the lab of Dr. Candace
Haigler, Professor of Crop Science and Plant Biology
(candace_haigler-at-ncsu.edu) as part of the Center for Lignocellulose
Structure and Formation. The research will focus on advanced TEM to
elucidate the structure and function of the cellulose-synthesizing
complex in plant systems. The intellectually challenging research will
be coordinated with other Center researchers working in the areas of
molecular genetics, nanobioengineering, computational modeling, and
biochemistry. Work will involve independent use of TEM, thin sectioning,
immunolabeling, and sample preparation by freeze fracture, with training
possible for freeze fracture for otherwise highly qualified candidates.
Persons with a PhD emphasizing biological TEM or highly experienced
candidates with a M.S. degree may apply at http://jobs.ncsu.edu for
position number 101332, which also provides further details about the
application process. NC State University is an equal
opportunity/affirmative action employer. All qualified applicants will
receive consideration for employment without regard to race, color,
national origin, religion sex, age, veteran status, disability, or
sexual orientation. Individuals with disabilities desiring
accommodations during the application process should contact Joyce Elias
at 919-515-2648.

Login Host: 152.1.151.167
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From: matthew.olszta-at-pnnl.gov
Date: Tue, 19 Jul 2011 10:55:00 -0500
Subject: [Microscopy] Desktop Microscopist

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All,
I would like to gauge the interest of the EM community in a new version of Desktop Microscopist. As many of you know, currently the accessibility of the old Mac version of DM is becoming obsolete, as I believe the last system it would operate on was OS9. Recently we have been in contact with the rights owner/creator of DM to possibly develop a new version which would run on any system (PC, Mac, Linux). It would be helpful to have an idea of who still uses DM, and if there is a desire to have it updated.

Our group still uses DM on a regular basis to solve any number of phase identification and orientation relationships in the oxidation of stainless steels, and so we are hopeful we can bring it over for a new generation of electron microscopists.

Emails responses can be sent to matthew.olszta-at-pnnl.gov

Regards,
Matt Olszta


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 19 Jul 2011 20:01:10 -0500
Subject: [Microscopy] viaWWW:Imaging in Biomedical Research at the University of Sussex

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Email: r.g.phillips-at-sussex.ac.uk Name: Roger Phillips

Organization: University of Sussex, School of Life Sciences

Title-Subject: [Filtered] Imaging in Biomedical Research at the
University of Sussex

Message: Dear colleagues,
I am Programme Convenor for the MSc in Imaging in Biomedical Research at
the University of Sussex. Due to late withdrawals, we can still offer
two fully funded (fees and stipend) MRC studentships for our course. I
would be very grateful if you would pass information about this
opportunity on to your graduated tutees. The programme includes taught
and research components and covers various techniques in microscopy,
medical imaging and image processing in equal parts. For further
information and for application please follow the links:
http://www.sussex.ac.uk/study/pg/2011/taught/1654/23871#tabs-1
http://www.sussex.ac.uk/study/pg/applying/
Please advise any interested student to contact me at
R.G.Phillips-at-sussex.ac.uk Thanks for your help, Roger

Dr Roger Guy Phillips
Centre for Advanced Microscopy,
University of Sussex
School of Life Sciences
John Maynard Smith Building
Falmer, Brighton & Hove
BN1 9QG
United Kingdom

phone:44 (0)1273 877585
fax: 44 (0)1273 678433
email: R.G.Phillips-at-sussex.ac.uk
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 19 Jul 2011 20:01:32 -0500
Subject: [Microscopy] viaWWW:Ultramicrotome problem

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Email: guosheng.liu-at-usask.ca Name: Guosheng Liu

Organization: U of S

Title-Subject: [Filtered] Ultramicrotome problem

Message: Hi, All,

Our two Reichert-Jung Ultracut microtomes are long due for tuning up or
service. The worst is that the Reset Control for Specimen Advance knob
doesn't work yesterday (the warning light keep flashing). Any
suggestion/idea for fixing it? I noticed an message that was sent by
Dorota two months ago requesting for service (see below) but no replies
were posted. I got similar question: any service available for those old
microtomes in north America?

Thanks a lot,

Guosheng Liu

_______________________________________________________________
Organization: Atlantic Veterinary College at UPEI

Ultramicrotome service

Hi, I am looking for a service for our Reichert-Jung Ultracut E
microtome in Maritime area, Canada. Our ultramicrotomes are in need of a
tune up or more.
Thank you Dorota

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 19 Jul 2011 20:02:20 -0500
Subject: [Microscopy] viaWWW:long term effects of flooding

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Email: garnet.martens-at-botany.ubc.ca Name: Garnet Martens

Organization: UBC Bioimaging Facility

Title-Subject: [Filtered] long term effects of flooding

Message: Hello all,

We suffered a major flood in our emlab over the past weekend. A water
pipe on the third floor of our building fell apart on Saturday morning
and eventually flooded the entire wing. All four of our scopes got very
wet and I was wondering if anyone out there has had a similar
experience. The water filtered through three floors of concrete and was
basically brine by the time in hit the basement. Some of our ancillary
equipment is now showing signs of rust and some external parts of the
scopes are showing rust as well. By the way, this is our third flood in
6 years but definitely the worst.

Hoping for the best and the scopes are resurrected what are some of the
long term effects that you have discovered? How have the microscope
companies dealt with extended warranties, etc.
Thanks,

Garnet

--
Garnet Martens
Research Manager
BioImaging Facility
6270 University Blvd
Vancouver, BC
V6T 1Z4
CANADA

garnet.martens-at-botany.ubc.ca
www.emlab.ubc.ca
604-822-3354


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From: kraftpiano-at-gmail.com
Date: Tue, 19 Jul 2011 20:12:38 -0500
Subject: [Microscopy] Re: viaWWW:long term effects of flooding

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I don't know what type of scope this is, or what vintage, but I was teaching in my classroom in West Palm Beach, FL when a torrential deluge erupted, which resulted in the flooding of my classroom, mid-lecture. (Apparently, as we later found out, the downspouts were all pointing into a drainage ditch which ran into my room, which was in the corner of the building) I had a JEOL JSM-35CF in there, and although there was some rusting around the base, everything was OK, as the height of the base was two inches or so, which was below the high water line. I would imagine the true extent of the damage really depends on how high the water got, and what components came into contact with it. That being said, everything was allowed to dry off for a significant amount of time before I felt comfortable powering anything up again.

--Justin A. Kraft



On Jul 19, 2011, at 9:07 PM, microscopylistserver-noreply-at-microscopy.com wrote:

}
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} Email: garnet.martens-at-botany.ubc.ca Name: Garnet Martens
}
} Organization: UBC Bioimaging Facility
}
} Title-Subject: [Filtered] long term effects of flooding
}
} Message: Hello all,
}
} We suffered a major flood in our emlab over the past weekend. A water
} pipe on the third floor of our building fell apart on Saturday morning
} and eventually flooded the entire wing. All four of our scopes got very
} wet and I was wondering if anyone out there has had a similar
} experience. The water filtered through three floors of concrete and was
} basically brine by the time in hit the basement. Some of our ancillary
} equipment is now showing signs of rust and some external parts of the
} scopes are showing rust as well. By the way, this is our third flood in
} 6 years but definitely the worst.
}
} Hoping for the best and the scopes are resurrected what are some of the
} long term effects that you have discovered? How have the microscope
} companies dealt with extended warranties, etc.
} Thanks,
}
} Garnet
}
} --
} Garnet Martens
} Research Manager
} BioImaging Facility
} 6270 University Blvd
} Vancouver, BC
} V6T 1Z4
} CANADA
}
} garnet.martens-at-botany.ubc.ca
} www.emlab.ubc.ca
} 604-822-3354
}
}
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From: bigelow-at-umich.edu
Date: Tue, 19 Jul 2011 22:21:55 -0500
Subject: [Microscopy] Preventing corrosion

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Those of you who have had your instruments flooded recently may be
interested in products called"Vapor Phase Corrosion Inhibitors". I
first encountered this stuff while in the Navy, working in the
Corrosion Group at the Naval Research Laboratory back during WWII.
These are compounds that give off a vapor that adsorbs onto metal
surfaces and prevents corrosion from occurring. The amount adsorbed
is of the order of a monomolecular layer - you"ll never know it's
there. We found we could ship steel rocket cases overseas with water
sloshing around in them, but no corrosion would occur as long as a
VPI was present. This leads me to think that if you put some VPI
inside the cabinets of the instruments that have been flooded it
might well prevent them from rusting.

Incidentally, if you buy a fancy, expensive tool, like a micrometer
caliper, you will often find a piece of yellow paper in the case
with it. This paper has been treated with a VPI and is present to
keep the tool from rusting during shipment and while on the dealers
shelf.

The VPI we used back in the 40s was manufactured by the Shell
Chemical Co. If you do a Google search for Vapor Phase Corrosion
Inhibitors you will find numerous references. From these it appears
that the Cortec Co. is now a major manufacturer of them. Perhaps it
would be worthwhile to get in contact with them and see if they might
suggest something that would keep your instruments from rusting..
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: kraftpiano-at-gmail.com
Date: Wed, 20 Jul 2011 07:18:31 -0500
Subject: [Microscopy] Link eXL system to a good home.

Contents Retrieved from Microscopy Listserver Archives
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Dear listers, I will be moving shortly, and am trying to downsize some of the random stuff I have hanging around that I do not need. In that vein, I have a Link eXL system that is fully functional (No detector) complete with software install disks and a bunch of manuals. I also have a complete set of spare parts for it to keep it running. The software is node-locked to the CPU, so those will have to go together, but if there is anyone out there still maintaining one of these systems, this is a great opportunity to get replacement parts and spares for the cost of shipping!

Unfortunately, if it doesn't get claimed before I leave for M&M, it will get tossed.

--Justin A. Kraft

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 20 Jul 2011 07:20:22 -0500
Subject: [Microscopy] viaWWW:Need help with Ion Pump problem on a EVO40

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Email: bengu-at-fen.bilkent.edu.tr Name: Erman Bengu

Organization: Bilkent University

Title-Subject: [Filtered] Need help with Ion Pump problem on a EVO40

Message: Hi All,

We are currently experiencing a problem with our Carl-Zeiss EVO 40 SEM.
We have fitted this SEM with a LaB6 filament, and the gun area is pumped
with an ion pump. We occasionally (every 3-4 months) bake the gun area
to reach ~ 2-3 x 10(-7) mbar vacuum levels as a req for the LaB6
filament operation.
During the last bake, we found that the ion pump stopped working during
the cool down stage while the final vacuum level in the system was good
around 10(-7) mbar levels.
However, since then we were not able to keep the ion-pump working. When
we turn the ion pump on, it slowly dies away. That is, the reading of
the vacuum level in the gun area is thru the ion current (there is not
an extra ion gauge in the system), and the vacuum level starts at
10(-8)mbars and within 5 mins goes down to 10(-11)mbars. Finally, the
ion pump shuts down. This pattern repeated after several restarts of the
system.
I tried gently tapping the ion pump with a plastic handle of a
screwdriver, which kept vacuum level around 10(-8)'s and the pump
running, but I think that is not a viable option for running any SEM
with decent resolution. :)

Any ideas, suggestions ?

Thanx in advance

Erman Bengu

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 20 Jul 2011 07:20:50 -0500
Subject: [Microscopy] viaWWW:service ultramicrotome

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Email: wadowska-at-upei.ca Name: Dorota Wadowska

Organization: Atlantic Veterinary College at UPEI

Title-Subject: [Filtered] service ultramicrotome

Message: Hi,
I posted a message asking about ultramicrotomes and I also sent e-mails
to EM labs in my area. Depending on what model of Reichetr-Jung you have
there might or might not be a service available. I got a contact for
Leica Microsystems and they agreed to service it. I have Ultracut E and
apparantly there is no service available at all. Dorota

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 20 Jul 2011 07:21:13 -0500
Subject: [Microscopy] viaWWW:Long term effects of flooding

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Email: richard.ross-at-allisontransmission.com Name: Richard Ross

Organization: Allison Transmission Inc.
Title-Subject: [Microscopy] Long term effects of flooding

Message: Long term effects can't be good. In general, corrosion will be
promoted. If electrical ciruitry is powered up while wet, electricity
will aggressively accelerate the corrosion. Definitely not good. Sounds
like your facilities people are about as concerned as our were. For
years we had an ancient air handler above our SEM that leaked steam
condensate in the winter and A/C condensate in the summer, not to
mention roof leaks. I finally built an ugly tent of reinforced
polyethylene sheeting over the scope. Finally, our area was remodeled
and the leaking air handler disappeared. Now its just the occasional
roof leak.
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From: varguc-at-freemail.hu
Date: Wed, 20 Jul 2011 07:49:44 -0500
Subject: [Microscopy] JCXA 733 operation console schematics needed

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Dear List!

We badly need your help because at the moment our Jeol JCXA 733 (Superprobe)
EPMA instrument at the Institute for Geochemical Research, Hungary cannot be
controlled by its original computer interface for some time.
It had originally been equipped with a DEC PDP-11 minicomputer but in 1996 we
replaced the PDP with a PC [Z.Valkai, L.Varga: PC interface for an old-fashioned
EPMA, proc. of EMAS'96, 2nd Regional Workshop on Electron Probe Microanal. of
Materials Today - Practical Aspects, 19-22 May 1996, Balatonfüred, Hungary,
p.71-72 (poster session)].
Our solution was based on a special ISA card developed by my colleague. This
card is connected to the UNIBUS lines so that the PC could play the exact role of
the PDP. After working for some 15 years this system is out of order now.
The Superprobe can still be controlled manually when the three state switch on
the operation console is in LOCAL mode.
My colleague has investigated the PC card and fixed some errors of the card.
However, the system still does'nt work under computer control. We suspect that
something went wrong in the operation control and interface (OCX) unit.
This unit is located in a big rack under the X-ray counting system, made by ORTEC.
The PDP computer used to be under these units in the same rack.
Please let us know if you have the circuit diagram of the OCX unit. We would
also appreciate any ideas to revive our system.
With my best regards:

Laszlo Varga, computer programmer

P.S. I am sending this message to the microscopy and to the EPMA lists at the
same time so I would like to apologize to those of you who receive it twice.


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From: vray-at-partbeamsystech.com
Date: Wed, 20 Jul 2011 08:43:41 -0500
Subject: [Microscopy] Re: viaWWW:Need help with Ion Pump problem on a EVO40

Contents Retrieved from Microscopy Listserver Archives
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Hi Erman,

Ion pumps have a long, but limited lifetime. Most likely internals of
your pump became coated with dielectric deposits, and you will need to
replace it. If new pump is beyond the budget, then you can send your
original pump to be rebuild.

For rebuilding I wholeheartedly recommend http://www.duniway.com/ No any
connections to Duniway here - just a very happy customer.

Good luck :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 7/20/2011 8:21 AM, microscopylistserver-noreply-at-microscopy.com wrote:
} ----------------------------------------------------------------------------
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} MIcroscopy Listserver
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} Email: bengu-at-fen.bilkent.edu.tr Name: Erman Bengu
}
} Organization: Bilkent University
}
} Title-Subject: [Filtered] Need help with Ion Pump problem on a EVO40
}
} Message: Hi All,
}
} We are currently experiencing a problem with our Carl-Zeiss EVO 40 SEM.
} We have fitted this SEM with a LaB6 filament, and the gun area is pumped
} with an ion pump. We occasionally (every 3-4 months) bake the gun area
} to reach ~ 2-3 x 10(-7) mbar vacuum levels as a req for the LaB6
} filament operation.
} During the last bake, we found that the ion pump stopped working during
} the cool down stage while the final vacuum level in the system was good
} around 10(-7) mbar levels.
} However, since then we were not able to keep the ion-pump working. When
} we turn the ion pump on, it slowly dies away. That is, the reading of
} the vacuum level in the gun area is thru the ion current (there is not
} an extra ion gauge in the system), and the vacuum level starts at
} 10(-8)mbars and within 5 mins goes down to 10(-11)mbars. Finally, the
} ion pump shuts down. This pattern repeated after several restarts of the
} system.
} I tried gently tapping the ion pump with a plastic handle of a
} screwdriver, which kept vacuum level around 10(-8)'s and the pump
} running, but I think that is not a viable option for running any SEM
} with decent resolution. :)
}
} Any ideas, suggestions ?
}
} Thanx in advance
}
} Erman Bengu
}
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From: jfmjfm-at-umich.edu
Date: Wed, 20 Jul 2011 09:00:48 -0500
Subject: [Microscopy] viaWWW:Need help with Ion Pump problem on a EVO40

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Gentle taps with a screw driver?
I can remember the Phillips engineers hitting the magnet of the ion pump on the Bristol EM400 with a 2" by 4" block of wood.
This was to knock the whiskers off the inside of the pump which tended to cause it to short out and not operate.
If you are going to have to replace the pump anyway, a couple of fairly brutal knocks might be in order, just to see if you can eek out a couple more months.
A rebuild is probably in the offing, but you might be able to stretch the life of the current one.
Cheers
Jfm

On Jul 20, 2011, at 9:52 AM, vray-at-partbeamsystech.com wrote:

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} Hi Erman,
}
} Ion pumps have a long, but limited lifetime. Most likely internals of
} your pump became coated with dielectric deposits, and you will need to
} replace it. If new pump is beyond the budget, then you can send your
} original pump to be rebuild.
}
} For rebuilding I wholeheartedly recommend http://www.duniway.com/ No any
} connections to Duniway here - just a very happy customer.
}
} Good luck :)
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
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} On 7/20/2011 8:21 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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} } Email: bengu-at-fen.bilkent.edu.tr Name: Erman Bengu
} }
} } Organization: Bilkent University
} }
} } Title-Subject: [Filtered] Need help with Ion Pump problem on a EVO40
} }
} } Message: Hi All,
} }
} } We are currently experiencing a problem with our Carl-Zeiss EVO 40 SEM.
} } We have fitted this SEM with a LaB6 filament, and the gun area is pumped
} } with an ion pump. We occasionally (every 3-4 months) bake the gun area
} } to reach ~ 2-3 x 10(-7) mbar vacuum levels as a req for the LaB6
} } filament operation.
} } During the last bake, we found that the ion pump stopped working during
} } the cool down stage while the final vacuum level in the system was good
} } around 10(-7) mbar levels.
} } However, since then we were not able to keep the ion-pump working. When
} } we turn the ion pump on, it slowly dies away. That is, the reading of
} } the vacuum level in the gun area is thru the ion current (there is not
} } an extra ion gauge in the system), and the vacuum level starts at
} } 10(-8)mbars and within 5 mins goes down to 10(-11)mbars. Finally, the
} } ion pump shuts down. This pattern repeated after several restarts of the
} } system.
} } I tried gently tapping the ion pump with a plastic handle of a
} } screwdriver, which kept vacuum level around 10(-8)'s and the pump
} } running, but I think that is not a viable option for running any SEM
} } with decent resolution. :)
} }
} } Any ideas, suggestions ?
} }
} } Thanx in advance
} }
} } Erman Bengu
} }
} } Login Host: 139.179.97.107
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___
John Mansfield PhD Cphys MInstP
Microanalysis Society - President Elect
Associate Director
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
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From: John.Mardinly-at-asu.edu
Date: Wed, 20 Jul 2011 12:27:23 -0500
Subject: [Microscopy] viaWWW:Need help with Ion Pump problem on a EVO40

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Erman;
Use a hammer and pound the crap out of it. If you are doing it
right, you should also use hearing protection and eye protection.

A. John Mardinly,
ASU


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Organization: Bilkent University

Title-Subject: [Filtered] Need help with Ion Pump problem on a EVO40

Message: Hi All,

We are currently experiencing a problem with our Carl-Zeiss EVO 40 SEM.
We have fitted this SEM with a LaB6 filament, and the gun area is pumped

with an ion pump. We occasionally (every 3-4 months) bake the gun area
to reach ~ 2-3 x 10(-7) mbar vacuum levels as a req for the LaB6
filament operation.
During the last bake, we found that the ion pump stopped working during
the cool down stage while the final vacuum level in the system was good
around 10(-7) mbar levels.
However, since then we were not able to keep the ion-pump working. When
we turn the ion pump on, it slowly dies away. That is, the reading of
the vacuum level in the gun area is thru the ion current (there is not
an extra ion gauge in the system), and the vacuum level starts at
10(-8)mbars and within 5 mins goes down to 10(-11)mbars. Finally, the
ion pump shuts down. This pattern repeated after several restarts of the

system.
I tried gently tapping the ion pump with a plastic handle of a
screwdriver, which kept vacuum level around 10(-8)'s and the pump
running, but I think that is not a viable option for running any SEM
with decent resolution. :)

Any ideas, suggestions ?

Thanx in advance

Erman Bengu

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From: FMonson-at-wcupa.edu
Date: Wed, 20 Jul 2011 14:05:17 -0500
Subject: [Microscopy] viaWWW:service ultramicrotome

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Took me 20 minutes to burrow into the Leica site - back-and-forth between Google and Leica - before I got a link that gave a Canadian address following an ultramicrotome 'hit'

Ultramicrotome:
http://www.leica-microsystems.com/products/electron-microscope-sample-preparation/biological-specimens/low-temperature-techniques/ultramicrotomy/details/product/leica-em-uc6/

contact: http://www.leica-microsystems.com/contact-support/local-addresses/ drop-down "Canada"

If I didn't know better, from your experience and mine today, I might think that Leica doesn't want anyone to contact them on this subject. If the owner is a public university, then get the lawyers to make the call, and make certain they have your service contract in hand.

Hope this helps,

Fred Monson

HTTP://CMIRT.WCUPA.EDU
fmonson-at-wcupa.edu

P.S. And I've been a Leitz user and owner all of my life!


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Email: wadowska-at-upei.ca Name: Dorota Wadowska

Organization: Atlantic Veterinary College at UPEI

Title-Subject: [Filtered] service ultramicrotome

Message: Hi,
I posted a message asking about ultramicrotomes and I also sent e-mails
to EM labs in my area. Depending on what model of Reichetr-Jung you have
there might or might not be a service available. I got a contact for
Leica Microsystems and they agreed to service it. I have Ultracut E and
apparantly there is no service available at all. Dorota

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From: greggps-at-umich.edu
Date: Wed, 20 Jul 2011 14:21:55 -0500
Subject: [Microscopy] RE: :service ultramicrotome

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

If it's any use, I was told that Leica's specimen sectioning/preparation business is now handled by Mager Scientific. Their contact information is below:

www.magersci.com Questions? Email us or call 734.426.3885
Mager Scientific, Inc. P.O. Box 160 Dexter, Michigan 48130

I don't believe they service the ultramicrotomes, but they have contacts for parts, and possibly a third party vendor recommendation.

Good luck,
~Gregg

Gregg Sobocinski
Microscope Imaging Specialist
University of Michigan
Molecular, Cellular, and Developmental Biology
Ann Arbor, Michigan
USA


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Email: wadowska-at-upei.ca Name: Dorota Wadowska

Organization: Atlantic Veterinary College at UPEI

Title-Subject: [Filtered] service ultramicrotome

Message: Hi,
I posted a message asking about ultramicrotomes and I also sent e-mails
to EM labs in my area. Depending on what model of Reichetr-Jung you have
there might or might not be a service available. I got a contact for
Leica Microsystems and they agreed to service it. I have Ultracut E and
apparantly there is no service available at all. Dorota

Login Host: 137.149.102.148
---------------------------------------------------------------------------



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From: bozzola-at-siu.edu
Date: Wed, 20 Jul 2011 17:38:53 -0500
Subject: [Microscopy] EM: frozen glutaraldehyde question

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We routinely store small ampoules of our glutaraldehyde in the
freezer. Someone noticed that 4 out of the 20 or so ampoules did not
freeze even after 4 months. We first thought they must be different
concentrations, but they are all 8%.

Anyone know why this might occur?

Thank you.

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: PhillipsT-at-missouri.edu
Date: Wed, 20 Jul 2011 17:43:37 -0500
Subject: [Microscopy] EM: frozen glutaraldehyde question

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I don't have the answer but will share a similar observation with Mowiol mounting medium. I freeze 2 ml aliquots of a batch and store them all in one rack in my -20 C freezer. Invariably some freeze and others don't. It doesn't appear to be related to where they are stored in the freezer. Initially I blamed this on technicians who failed to adequately mix the ingredients. But then I made a batch and stirred it for a ridiculous amount of time and still observed the variability. Perhaps the answer to John's question will also solve my mystery. Tom


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: bozzola-at-siu.edu [mailto:bozzola-at-siu.edu]
Sent: Wednesday, July 20, 2011 5:40 PM
To: Phillips, Thomas E.

We routinely store small ampoules of our glutaraldehyde in the
freezer. Someone noticed that 4 out of the 20 or so ampoules did not
freeze even after 4 months. We first thought they must be different
concentrations, but they are all 8%.

Anyone know why this might occur?

Thank you.

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: pwebster-at-hei.org
Date: Wed, 20 Jul 2011 17:59:53 -0500
Subject: [Microscopy] Re: EM: frozen glutaraldehyde question

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Hi John,

Have you checked to see if you have a non-frosting freezer? Some freezers
routinely switch on a thawing cycle to remove ice from the chamber.

You can easily tell of you have one or not - if your freezer is filled with
ice, you don't have one. If there is no ice build-up, it is because the
machine is thawing it on a time schedule.

Paul.


Paul Webster, Ph.D.
House Ear Institute
2100 West Third Street
Los Angeles
CA 90057
(213) 273 8026




On 7/20/11 3:42 PM, "bozzola-at-siu.edu" {bozzola-at-siu.edu} wrote:

} Microscopy-at-microscopy.com


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 20 Jul 2011 18:00:35 -0500
Subject: [Microscopy] viaWWW:Nonfat Dry Milk Powder for OsO4 Neutralization

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Email: singinggardenersx2-at-live.com Name: Gigi Kemalyan

Organization: HHMI/Nogales Lab

Title-Subject: [Filtered] Nonfat Dry Milk Powder for OsO4 Neutralization

Message: Hello Listers,
We are in the process of getting set-up for traditional bench top
fixation and resin embedding for a special TEM project, and as part of
that I have the task of writing an SOP for handling osmium tetroxide. A
colleague at the neighboring Lawrence Berkeley National Lab uses nonfat
dry milk powder for his OsO4 emergency spill kit. Try as I might, I have
not been able to find any literature that describes this as a safe way
to neutralize osmium tetroxide -- just the usual corn oil/kitty litter.
Have any of you used nonfat dry milk powder for osmium spills, or do you
know a source I could quote in our SOP? It seems a very simple and easy
way to handle a spill, but I want to make sure this method actually safe
before we make it part of our OsO4 handling protocol.
Many thanks,

Gigi Kemalyan
Research Technician
HHMI/Nogales Lab
742 Stanley Hall
Berkeley, CA 94720
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From: zaluzec-at-aaem.amc.anl.gov
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Subject: [Microscopy] Administrivia: Replying to postings from microscopylistserver-noreply@microscopy.com

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From: bigelow-at-umich.edu
Date: Wed, 20 Jul 2011 20:42:53 -0500
Subject: [Microscopy] RE: Ion Pumps

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Dr. Mardinly's comments about using a hammer to dislodge whiskers
inside an ion pump leads me to point out that if the whiskers are
not too firmly established it is often possible to get rid of them by
turning the high voltage supply on for a few seconds (not too long or
you may damage the power supply) three or four times with the
pressure in the pump above 1 Pa (10-2 Torr), If this approach works
it is gentler, and quieter, than the hammer method. Incidentally,
this method (but not the hammer method) and other characteristics of
ion pumps, are described on page 295 of my book, 'Vacuum Methods in
Electron Microscopy'.

Good luck!
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: peter.heimann-at-uni-bielefeld.de
Date: Thu, 21 Jul 2011 02:53:21 -0500
Subject: [Microscopy] Re: EM: frozen glutaraldehyde question

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this is a good sign!
obviously your solution in the state of a supercooled fluid and is very
clean (pure) and without any particles (serving as starters for freezing
of ice crystals)
just tap hardly on the vial immediately after taking from the freezer
and usually it should freeze (get solid) within a second.

greetings,

peter heimann



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We routinely store small ampoules of our glutaraldehyde in the freezer.
Someone noticed that 4 out of the 20 or so ampoules did not freeze even
after 4 months. We first thought they must be different concentrations,
but they are all 8%. Anyone know why this might occur? Thank you.

--
====================================================

Dr. Peter Heimann Raum: W7-107 / Tel.: +49-(0)521-106-5628
Universitaet Bielefeld Fax: +49-(0)521-106-5654
"Zellbiologie / Cell Biology" W7-107
33501 Bielefeld, Germany www.uni-bielefeld.de/biologie/cellbio



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From: tomas.hrncir-at-tescan.cz
Date: Thu, 21 Jul 2011 03:04:45 -0500
Subject: [Microscopy] Re: RE: Ion Pumps

Contents Retrieved from Microscopy Listserver Archives
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This is the correct procedure how to remove whiskers, however I do not
think that Erman's problem is caused by whiskers in the ion pump.
Presence of whiskers causes additional field emission current and as a
result it appears like additional (leakage) current. Such ion pump
shows higher ion current and therefore it measures higher pressure than
expected. Erman's ion pump shows unexpectedly low pressure. Therefore
it could be a problem of the ion pump controller (e.g. lower voltage
than usual), ion pump is not necessarily bad. I would not use a hammer
in this case :-).
Erman, please let us know your results later, so that we will know what
was your problem.
Tomas

--
Tomas Hrncir, Ph.D.
R&D - Physics http://www.tescan.cz
Tescan +420 547130468 | tomas.hrncir-at-tescan.cz
Libusina trida 21 | 623 00 Brno | Czech Republic

On Wed, 20 Jul 2011 20:51:28 -0500
bigelow-at-umich.edu wrote:

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} Dr. Mardinly's comments about using a hammer to dislodge whiskers
} inside an ion pump leads me to point out that if the whiskers are
} not too firmly established it is often possible to get rid of them by
} turning the high voltage supply on for a few seconds (not too long or
} you may damage the power supply) three or four times with the
} pressure in the pump above 1 Pa (10-2 Torr), If this approach works
} it is gentler, and quieter, than the hammer method. Incidentally,
} this method (but not the hammer method) and other characteristics of
} ion pumps, are described on page 295 of my book, 'Vacuum Methods in
} Electron Microscopy'.
}
} Good luck!
} --
} Wilbur C. Bigelow, Professor Emeritus
} Materials Sci. & Engr., Univ. of Michigan
} Ann Arbor, Michigan 48109-2136
} e-mail: bigelow-at-umich.edu;
} Fx:734-763-4788; Ph:734-975-0858
} Address mail to: 2911 Whittier Court
} Ann Arbor, MI 48104-6731


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From: W.Muss-at-salk.at
Date: Thu, 21 Jul 2011 03:43:38 -0500
Subject: [Microscopy] Re: Nonfat Dry Milk Powder for OsO4 Neutralization [SOP for handling OsO4], sorry for longness

Contents Retrieved from Microscopy Listserver Archives
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Good morning,

dear Gigi,

as to my knowledge, there are several (US-) (internet-)sources (SOP's, pdf's) on OsO4 handling, storage and disposal available, some of them I have filed in my e-library.
e.g.:
OsO4 SOP: Div.of Occupatl.Health&Safety,NIH
OsO4 SOP: UnivMed&Dent.NJ


Also I have chosen a very simple ("European") way of treating used OsO4 working solutions and disposing them of very effective by first overlaying such with (ca.98-99%) EtOH (ETHANOL) solution (which has been collected from the last two dehydration steps of specimens in 100% EtOH) and in a second step, to decant the more less clear overlaying solution and keep the } Osmium Black { precipitate in a bigger storage flask until it is filled and last but not least can be

EITHER "recycled" (by yourself, colleagues of a Chemistry Department or a company willing to take over the material for recycling)

OR disposed of as "OsO2-metal precipitate in EtOH" according to your national/local laws/regulations.

Such a method IMHO should be favoured (compared to treating OsO4-working solutions with either corn oil, kitty litter and so on....), since it produces more/less safe and stable storage conditions for a more/less non-hazardous precipitation product, which - additionally - easily can be } stored { as well as } recovered { in higher amounts and might be "recycled" by chemical proven methods if such a possibility is desired for any reason.

Such a "method", as I described earlier (MUSS 1992) was not invented by myself, since there were bibliographic sources pointing to such possibilities, but has been tested and proven over a long period of } practical { experience (my own hand on: 1983-1992), was communicated also several times on the MSA listserver, you'll find several postings on this in the MSA List-Server archives [1997, 2002 2007, last thread on this was Nov.2010, as well as some Net-Notes in the MSA-periodical: Microscopy Today..]

You need not to follow such personal practical hints, because they were made "official" by a } European { Electron microscopist like me (opposing at that time the disposal considerations of a big US-Company), but there also have been some US-colleagues using that method independently in parallel and there were given quite strong hints on that "precipitating OsO4 to OsO2= Osmiumblack " method by

e.g. MILLONIG 1976 ( "About Methodology" conc. OsO4 Fixative(s) in:
Laboratory Manual of Biological Electron Microscopy, Millonig G (ed.), Mario SAVIOLO EDITORE, Vercelli Italy)

as well as KIERNAN,
e.g. 2001
John A. KIERNAN: e-mail: jkiernan-at-julian.uwo.ca
Recycling Osmium Tetroxide.
MICROSCOPY TODAY, #01-1, 19, (Jan) 2001
keywords: recycling, osmeth, OsO4, OsO2, primary, secondary, post - fixative
{ { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { {CITATION} } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } } }
Osmium tetroxide is indeed a wonderful stuff. Osmium is a rare element, so disposal of used solutions should consist of recycling, not dumping, even though osmium compounds are not considered environmentally hazardous (Smith et al., 1978, Trace Metal in the Environment, vol. 4, Ann Arbor Science Publishers). The colorless and soluble toxic tetroxide is rapidly reduced by almost any kind of dirt to a black, insoluble dioxide, usually in a colloidal form that's readily dispersed by moving water if it isn't firmly stuck to the solid organic matter that brought about the reduction.

If OsO4 slops are collected in alcohol, the osmium (now in the form of crude, harmless, insoluble osmium dioxide) can be reoxidized, purified, re-reduced to pure OsO2 and stored. OsO2 is easily re-oxidized to give a buffered solution of osmium tetroxide (2% or less). See J. Micr. 113, 77-82 (1978) 1; the procedure does involve certain hazards, so it must be done carefully.

Recovered OsO4 can also be used to make osmeth, which is a beautiful golden crystalline solid that contains osmium tetroxide complexed with methenamine ( = hexamethylene tetramine or hexamine [HANKER et al., 1976, Histochemistry 49, 263-291] 2). It costs next to nothing to make your own osmeth from recycled OsO4, but osmeth is very expensive to buy. Osmeth does not emit osmic (and therefore toxic) fumes.
{ { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { {end of citation { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { { {

but also there are other points of views published in the net: see RE by Jim Darley in 2000) to KIERNAN's view at:
http://www.histosearch.com/histonet/Nov00A/RE.quotDisposalquotofOsmiA.html

As a matter of fact, recently (don't exactly know when companies started to offer such reagents) there have been described other ways to fully deactivate as well as recover OsO4-OsO2 by means of chemical scavenger reagent:
cf:
Osmium recovery is possible with scavengers such as {QuadraPure}
(http://www.sigmaaldrich.com/etc/medialib/docs/Aldrich/Brochure/al_quadrapure_guide.Par.0001.File.tmp/al_quadrapure_guide.pdf)
Now available from Johnson Matthey on scale as well as Sigma-Aldrich for smaller amounts.
http://www.scavengingtechnologies.com/site.asp?id=1297&pageid=1299
(but that means: you have to pay for additional, perhaps costly chemicals)



If you would like to know more about the low cost, effective and reliable "technique" I personally use for now over 25 years in our lab (and got a local award for environment protection!), or would like to get some documents wherein the steps not only have been described but have been enlighting also the "Why's" and "How's", please feel free to reply to me and request/allow sending of those documents (pdf's).

Naturally I would like to hear about what you are going to do,
for that:
best wishes and good luck,



Wolfgang MUSS
(MSA Member in good standing since 1996)
Head EM-Lab
Univ.-Inst. Pathology SALK-LKH (Gen. Hosp.)
and PMU (priv. Paracelsus Medical University)

SALZBURG AUSTRIA









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} Gesendet: Donnerstag, 21. Juli 2011 01:03
} An: Muß Wolfgang
} Betreff: [Microscopy] Nonfat Dry Milk Powder for OsO4 Neutralization
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} Email: singinggardenersx2-at-live.com
} Name: Gigi Kemalyan
} Organization: HHMI/Nogales Lab
} Title-Subject: Nonfat Dry Milk Powder for OsO4
} Neutralization
} Message:
}
} Hello Listers,
} We are in the process of getting set-up for traditional bench top
} fixation and resin embedding for a special TEM project, and as part of
} that I have the task of writing an SOP for handling osmium tetroxide.
}
} A colleague at the neighboring Lawrence Berkeley National Lab uses
} nonfat dry milk powder for his OsO4 emergency spill kit.
} Try as I might, I have not been able to find any literature that
} describes this as a safe way to neutralize osmium tetroxide -- just the
} usual corn oil/kitty litter.
}
} Have any of you used nonfat dry milk powder for osmium spills, or do
} you know a source I could quote in our SOP? It seems a very simple and
} easy way to handle a spill, but I want to make sure this method
} actually safe before we make it part of our OsO4 handling protocol.
}
} Many thanks,
}
} Gigi Kemalyan
} Research Technician
} HHMI/Nogales Lab
} 742 Stanley Hall
} Berkeley, CA 94720
} http://cryoem.berkeley.edu
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From: ehaller-at-health.usf.edu
Date: Thu, 21 Jul 2011 07:18:29 -0500
Subject: [Microscopy] Re: EM: frozen glutaraldehyde question

Contents Retrieved from Microscopy Listserver Archives
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Drats! Here, I thought I had finally discovered proof for dark energy, and was ready to publish a paper on it! I thought the majic particles were keeping these vials thawed. :)

Ed

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: pwebster-at-hei.org [pwebster-at-hei.org]
Sent: Wednesday, July 20, 2011 7:06 PM
To: Haller, Edward

Hi John,

Have you checked to see if you have a non-frosting freezer? Some freezers
routinely switch on a thawing cycle to remove ice from the chamber.

You can easily tell of you have one or not - if your freezer is filled with
ice, you don't have one. If there is no ice build-up, it is because the
machine is thawing it on a time schedule.

Paul.


Paul Webster, Ph.D.
House Ear Institute
2100 West Third Street
Los Angeles
CA 90057
(213) 273 8026




On 7/20/11 3:42 PM, "bozzola-at-siu.edu" {bozzola-at-siu.edu} wrote:

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From: oshel1pe-at-cmich.edu
Date: Thu, 21 Jul 2011 07:42:28 -0500
Subject: [Microscopy] Re: EM: frozen glutaraldehyde question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Nah, it's really string theory = the glutaraldehyde has formed long chains.

It hasn't? Then it must be string theory - the predicted value is wrong.

Phil

} Drats! Here, I thought I had finally discovered proof for dark
} energy, and was ready to publish a paper on it! I thought the majic
} particles were keeping these vials thawed. :)
}
} Ed
}
} Edward Haller, Lab Manager
} University of South Florida
} Integrative Biology Department
} Electron Microscopy Core
} SCA 110
} 4202 East Fowler Avenue
} Tampa, FL 33620
} 813-974-2676
} ehaller-at-usf.edu
} Office: LSA 119
} ________________________________________
} X-from: pwebster-at-hei.org [pwebster-at-hei.org]
} Sent: Wednesday, July 20, 2011 7:06 PM
} To: Haller, Edward
} Subject: [Microscopy] Re: EM: frozen glutaraldehyde question
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: jmircheski-at-us.es
Date: Thu, 21 Jul 2011 09:06:50 -0500
Subject: [Microscopy] Sodium ethoxide

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

I need to etch some Epon from my blocks, and I intended using Sodium
Ethoxide for that. Unfortunately, I can't find the detailed protocol that I
used (only once) several years ago. Can anyone provide a detailed protocol
for the preparation, please?
Thanks,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es





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From: jmircheski-at-us.es
Date: Thu, 21 Jul 2011 09:13:34 -0500
Subject: [Microscopy] EPON in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

One more question for today:
Has anyone examined EPON blocks in a SEM? I tried to image my muscle samples
embedded in EPON with a SEM. (the same block was previously used for
ultra-thin sections, so its surface was pretty flat). The only thing I could
see were brighter than background spots representing the muscle fibres.
I'll try to remove some resin from the surface with sodium ethoxide, so that
only the sample "sticks out" a little bit over the resin, unembedded.
Has anyone else done something similar (seeing EPON blocks in SEM)? Could
you please share your experience?

Thanks again,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es





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From: bozzola-at-siu.edu
Date: Thu, 21 Jul 2011 09:14:48 -0500
Subject: [Microscopy] Re: EM: frozen glutaraldehyde question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ed,

Drats, indeed! Now I have to recall my online paper:

A New Phenomenon: Dark Matter Causes Freezing Point Depression of
Aqueous Solutions of Glutaraldehyde

I hoped it would be a classic, along with the articles on polywater
and spiritual ectoplasms.

John Bozzola

}
} Drats! Here, I thought I had finally discovered proof for dark energy, and was ready to publish a paper on it! I thought the majic particles were keeping these vials thawed.  :)
}
} Ed
}
} Edward Haller, Lab Manager
} University of South Florida

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: PhillipsT-at-missouri.edu
Date: Thu, 21 Jul 2011 09:30:14 -0500
Subject: [Microscopy] Sodium ethoxide

Contents Retrieved from Microscopy Listserver Archives
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I usually just dump a bunch of sodium hydroxide pellets into the bottle of a glass Schott-style bottle and then add about 50-100 mls of ethanol to it. You want a saturated solution so if all the pellets dissolve, add more. You could use a stir bar to speed equilibration but I usually do it a couple of days beforehand and give the bottle a swirl once or twice a day and that is enough. It is obviously a caustic solution so be careful. Wear gloves and I usually require my students to wear safety glasses when using it. I simply carefully decant off the solution when I want to use it. Many anecdotal comments I have read on line over the years suggest it gets stronger the longer you let the solution sit. When I want to etch the sections, I use this procedure:

1) Pour about 40-50 mls of sodium ethoxide solution into a glass Coplin jar. This solution is very caustic - use gloves and eye protection!

2) Etch number and circle sections on the slides using a diamond pen. Rinse the slides with dH2O.

3) Carefully insert slides into the caustic sodium ethoxide solution using a forceps. Leave in etching solution for 1 hour.

4) Fill 3 Coplin jars with 95% ethanol, 70% ethanol, and dH2O.

5) Using a forceps, transfer the slides from the etching solution into the 95% ethanol for 10 min.

6) Using a forceps, transfer the slides from the 95% solution into the 70% ethanol for 10 min.

7) Using a forceps, transfer the slides to the distilled water Coplin jar. Transfer the Coplin gar to the sink and slowly run distilled water into the jar for 10 min.

8) Let the slides dry.

Good luck. Tom


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: jmircheski-at-us.es [mailto:jmircheski-at-us.es]
Sent: Thursday, July 21, 2011 9:08 AM
To: Phillips, Thomas E.

Dear Listers,

I need to etch some Epon from my blocks, and I intended using Sodium
Ethoxide for that. Unfortunately, I can't find the detailed protocol that I
used (only once) several years ago. Can anyone provide a detailed protocol
for the preparation, please?
Thanks,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es





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From: beth-at-plantbio.uga.edu
Date: Thu, 21 Jul 2011 09:37:46 -0500
Subject: [Microscopy] service ultramicrotome

Contents Retrieved from Microscopy Listserver Archives
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If you don't mind shipping your equipment try http://southeastpathology.com/service/
for microtome service.
best,
Beth


} Email: wadowska-at-upei.ca Name: Dorota Wadowska
}
} Organization: Atlantic Veterinary College at UPEI
}
} Title-Subject: [Filtered] service ultramicrotome
}
} Message: Hi,
} I posted a message asking about ultramicrotomes and I also sent e-
} mails
} to EM labs in my area. Depending on what model of Reichetr-Jung you
} have
} there might or might not be a service available. I got a contact for
} Leica Microsystems and they agreed to service it. I have Ultracut E
} and
} apparantly there is no service available at all. Dorota


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From: eschumacher-at-mccrone.com
Date: Thu, 21 Jul 2011 09:40:54 -0500
Subject: [Microscopy] Meeting Announcement: M3S Optical Workshop

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Greetings All,

The Midwest Microscopy and Microanalysis Society will hold its fifth annual Optical Techniques Workshop on Wednesday, August 31, 2011, at the Hooke College of Applied Sciences in Westmont, IL. John G. Delly will present an overview of contrast techniques for light microscopy. Program details and registration information can be found on our website under Meetings:

www.midwestmicroscopy.org

We look forward to seeing you there!

Regards,

Elaine Schumacher
M3S Program Coordinator

*********************************************************************
Elaine F.Schumacher
Senior Research Scientist
McCrone Associates, Inc.
850 Pasquinelli Drive
Westmont, IL 60559-5539 USA
630-887-7100 (tel)
630-887-7417 (fax)
E-mail: eschumacher-at-mccrone.com
Web Site: www.mccrone.com



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From: ehaller-at-health.usf.edu
Date: Thu, 21 Jul 2011 14:21:27 -0500
Subject: [Microscopy] EPON in SEM

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Hi, Josif,

I haven't seen any replies to your question on the listserver. Yes, I have done SEM on EPON thick sections without etching them, which work better than using the block. Use a razor blade and hand-trim a "thick" section (actually as thin as you can trim manually) from an EPON block after you have cut some thin sections from the block face to smooth the face off, and mount this section with the smooth side facing up on some double-sided carbon tape. Use a piece of plastic wrap (Saran Wrap, sandwich wrap, plastic bag) to press the section onto the tape. If you have access to a carbon coater, give the sample a light carbon coating to reduce charging. Put a couple of marks on the tape so you can find the section easily in the SEM, either by pin pricks or dots of silver paint. Now observe your section using your backscattered electron detector. I've never tried this with en-bloc uranyl acetate stained tissue, only osmicated tissue, but have been able to obtain photos of the tissue in this manner, and if the tissue had foreign particles in it, have located them rapidly by this technique for x-ray analysis. You may try staining your tissue with uranyl acetate and lead citrate and see if this is a possibility. I have not experimented with this.

Ed Haller

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: jmircheski-at-us.es [jmircheski-at-us.es]
Sent: Thursday, July 21, 2011 10:21 AM
To: Haller, Edward

One more question for today:
Has anyone examined EPON blocks in a SEM? I tried to image my muscle samples
embedded in EPON with a SEM. (the same block was previously used for
ultra-thin sections, so its surface was pretty flat). The only thing I could
see were brighter than background spots representing the muscle fibres.
I'll try to remove some resin from the surface with sodium ethoxide, so that
only the sample "sticks out" a little bit over the resin, unembedded.
Has anyone else done something similar (seeing EPON blocks in SEM)? Could
you please share your experience?

Thanks again,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain

Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es





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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 21 Jul 2011 18:04:11 -0500
Subject: [Microscopy] viaWWW:Olympus CKX41 question

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Email: michael.cammer-at-med.nyu.edu
Name: Michael Cammer

Organization: Skirball/NYU

Title-Subject: [Filtered] Olympus CKX41 question

Message: The Olympus CKX41 fluorescent tissue culture microscope is sold
with filter blocks for "blue" and "green" fluorescence. Has anyone
retrofitted it for additional filters, such as mCherry?



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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 22 Jul 2011 08:07:31 -0500
Subject: [Microscopy] viaWWW:converting TEM to digital image capture

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Email: saidel-at-camden.rutgers.edu Name: Bill Saidel

Organization: Rutgers Univ., Dept of Biology, Camden campus

Title-Subject: [Filtered] converting TEM to digital image capture

Message: Has anyone successfully used the side port of a Zeiss 902 (or
any model TEM) with a digital camera body (Nikon) to capture images? If
so, please rsvp me with details (saidel-at-camden.rutgers.edu) or
information about companies that have the accessory equipment?

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From: protrain-at-emcourses.com
Date: Fri, 22 Jul 2011 15:12:29 -0500
Subject: [Microscopy] Microscopy Errors

Contents Retrieved from Microscopy Listserver Archives
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Hi

The latest Microscopy Today just bounced on my doorstep and I have to say I
am 100% with Charles Lyman's editorial comment! And, whilst we are at it,
what about destroying the other errors in understanding that have made their
home in our subject?

Most errors seem to crop up in SEM terminology. Take objective lens as a
name for the third condenser, it does not follow microscopy parlance in that
the does not produce the image, it simply acts as a third condenser. In
truth it is the instrument's electronics that produces the image. Then
there is depth of field when what people are talking about is depth of
focus. How does the position of an imaging surface explain the way we
visualise depth in an image? Please, please let us sort out depth of field
and depth of focus too!

Microscopy has an amazing history, so abusing names that were part of that
history does seem so wrong!

Steve Chapman
Protrain



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From: PhillipsT-at-missouri.edu
Date: Fri, 22 Jul 2011 15:22:28 -0500
Subject: [Microscopy] Microscopy Errors

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I also agree. I bought a microscope and there is nothing micro about it. I can barely lift the thing! :) Tom


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: Friday, July 22, 2011 3:14 PM
To: Phillips, Thomas E.

Hi

The latest Microscopy Today just bounced on my doorstep and I have to say I
am 100% with Charles Lyman's editorial comment! And, whilst we are at it,
what about destroying the other errors in understanding that have made their
home in our subject?

Most errors seem to crop up in SEM terminology. Take objective lens as a
name for the third condenser, it does not follow microscopy parlance in that
the does not produce the image, it simply acts as a third condenser. In
truth it is the instrument's electronics that produces the image. Then
there is depth of field when what people are talking about is depth of
focus. How does the position of an imaging surface explain the way we
visualise depth in an image? Please, please let us sort out depth of field
and depth of focus too!

Microscopy has an amazing history, so abusing names that were part of that
history does seem so wrong!

Steve Chapman
Protrain



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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 22 Jul 2011 19:09:11 -0500
Subject: [Microscopy] viaWWW:Circuit diagrams of PHI 660

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Email: charlesping-at-hotmail.com Name: Xiaoping Zha

Organization: University of York

Title-Subject: [Filtered] Circuit diagrams of PHI 660

Message: Dear all

Has anyone got circuit diagrams of PHI 660 Scanning Auger System? Our
PHI 660 has difficulties in high magnification. The deflection waveform
shows high noise. Just wonder if anyone has the circuit diagrams for PHI
660 so that we can diagnose the issue. Many thanks

Dr. Xiaoping Zha
University of York

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From: gary.nichols-at-pfizer.com
Date: Mon, 25 Jul 2011 05:36:16 -0500
Subject: [Microscopy] Microscopy Errors

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Steve,

I agree that the terms "depth of field" and "depth of focus" are too
frequently interchanged, but I feel that you, too, have fallen into the
same trap. These two terms are well-documented and describe two quite
different features in an imaging system. You got it correct in your
1986 book: Working with the Scanning Electron Microscope (page 22).

Depth of field relates to the object space and depth of focus relates to
the image space. Some microscopists use "depth of focus" when they
really mean "depth of field"; the confusion seems to come from the fact
that as the focus control is adjusted, different parts of the specimen
(in the z-direction) go in and out of focus. So, when photographers
(who first coined the terms) and light and electron microscopists use
the term "depth of field" they are correct if they are talking about how
much of the subject or specimen is in acceptable focus. Depth of focus
is used to describe the how much a camera can be moved from the film
/detector plane before the image becomes unacceptably out of focus.
Depth of focus is usually a fixed distance that cannot be changed
because it is unusual for the microscopist to be able to move the film
or detector plane away from the imaging/projection lens. For digital
imaging in an SEM, depth of focus is a redundant term because there is
no camera, so a microscopist shouldn't even need to think about this
term nowadays.

Microscopy does have an amazing history and the two terms are
well-established and easily understood, so any attempt to change their
meaning will result in even more confusion. I hope that the depth of
field and depth of focus is now sorted!

Gary Nichols
Pfizer UK
-------------------------
Hi

The latest Microscopy Today just bounced on my doorstep and I have to
say I am 100% with Charles Lyman's editorial comment! And, whilst we
are at it, what about destroying the other errors in understanding that
have made their home in our subject?

Most errors seem to crop up in SEM terminology. Take objective lens as
a name for the third condenser, it does not follow microscopy parlance
in that the does not produce the image, it simply acts as a third
condenser. In truth it is the instrument's electronics that produces
the image. Then there is depth of field when what people are talking
about is depth of focus. How does the position of an imaging surface
explain the way we visualise depth in an image? Please, please let us
sort out depth of field and depth of focus too!

Microscopy has an amazing history, so abusing names that were part of
that history does seem so wrong!

Steve Chapman
Protrain

-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: 22 July 2011 21:16
To: Nichols, Gary

Hi

The latest Microscopy Today just bounced on my doorstep and I have to
say I
am 100% with Charles Lyman's editorial comment! And, whilst we are at
it,
what about destroying the other errors in understanding that have made
their
home in our subject?

Most errors seem to crop up in SEM terminology. Take objective lens as
a
name for the third condenser, it does not follow microscopy parlance in
that
the does not produce the image, it simply acts as a third condenser. In
truth it is the instrument's electronics that produces the image. Then
there is depth of field when what people are talking about is depth of
focus. How does the position of an imaging surface explain the way we
visualise depth in an image? Please, please let us sort out depth of
field
and depth of focus too!

Microscopy has an amazing history, so abusing names that were part of
that
history does seem so wrong!

Steve Chapman
Protrain



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From: protrain-at-emcourses.com
Date: Mon, 25 Jul 2011 06:07:08 -0500
Subject: [Microscopy] Microscopy Errors

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Gary

Thank you for pointing out a misunderstanding I may have portrayed, my term
"imaging surface" was me referring to the "film plane".

For those who I may have confused I think the TEM portrays depth of field
and depth of focus very clearly. It is easy to see how small a depth of
field the operator has (just microns) and it is clear the depth of focus is
almost limitless with an image in focus on a digital camera both above and
below the screen!

Watching TV and writing an email is clearly not the best way of explaining a
situation; sorry listers.

Steve

-----Original Message-----
X-from: gary.nichols-at-pfizer.com [mailto:gary.nichols-at-pfizer.com]
Sent: 25 July 2011 11:37
To: protrain-at-emcourses.com

Steve,

I agree that the terms "depth of field" and "depth of focus" are too
frequently interchanged, but I feel that you, too, have fallen into the
same trap. These two terms are well-documented and describe two quite
different features in an imaging system. You got it correct in your
1986 book: Working with the Scanning Electron Microscope (page 22).

Depth of field relates to the object space and depth of focus relates to
the image space. Some microscopists use "depth of focus" when they
really mean "depth of field"; the confusion seems to come from the fact
that as the focus control is adjusted, different parts of the specimen
(in the z-direction) go in and out of focus. So, when photographers
(who first coined the terms) and light and electron microscopists use
the term "depth of field" they are correct if they are talking about how
much of the subject or specimen is in acceptable focus. Depth of focus
is used to describe the how much a camera can be moved from the film
/detector plane before the image becomes unacceptably out of focus.
Depth of focus is usually a fixed distance that cannot be changed
because it is unusual for the microscopist to be able to move the film
or detector plane away from the imaging/projection lens. For digital
imaging in an SEM, depth of focus is a redundant term because there is
no camera, so a microscopist shouldn't even need to think about this
term nowadays.

Microscopy does have an amazing history and the two terms are
well-established and easily understood, so any attempt to change their
meaning will result in even more confusion. I hope that the depth of
field and depth of focus is now sorted!

Gary Nichols
Pfizer UK
-------------------------
Hi

The latest Microscopy Today just bounced on my doorstep and I have to
say I am 100% with Charles Lyman's editorial comment! And, whilst we
are at it, what about destroying the other errors in understanding that
have made their home in our subject?

Most errors seem to crop up in SEM terminology. Take objective lens as
a name for the third condenser, it does not follow microscopy parlance
in that the does not produce the image, it simply acts as a third
condenser. In truth it is the instrument's electronics that produces
the image. Then there is depth of field when what people are talking
about is depth of focus. How does the position of an imaging surface
explain the way we visualise depth in an image? Please, please let us
sort out depth of field and depth of focus too!

Microscopy has an amazing history, so abusing names that were part of
that history does seem so wrong!

Steve Chapman
Protrain

-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: 22 July 2011 21:16
To: Nichols, Gary

Hi

The latest Microscopy Today just bounced on my doorstep and I have to
say I
am 100% with Charles Lyman's editorial comment! And, whilst we are at
it,
what about destroying the other errors in understanding that have made
their
home in our subject?

Most errors seem to crop up in SEM terminology. Take objective lens as
a
name for the third condenser, it does not follow microscopy parlance in
that
the does not produce the image, it simply acts as a third condenser. In
truth it is the instrument's electronics that produces the image. Then
there is depth of field when what people are talking about is depth of
focus. How does the position of an imaging surface explain the way we
visualise depth in an image? Please, please let us sort out depth of
field
and depth of focus too!

Microscopy has an amazing history, so abusing names that were part of
that
history does seem so wrong!

Steve Chapman
Protrain



==============================Original
Headers==============================
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From: Jan.Ringnalda-at-fei.com
Date: Mon, 25 Jul 2011 06:29:04 -0500
Subject: [Microscopy] Microscopy Errors

Contents Retrieved from Microscopy Listserver Archives
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Hi Steve, 'Microns' of depth of field was a long time before aberration correctors became popular. I think this discussion of depth of field will become more and more important as correctors allow larger convergence angles and subsequently severely reduce the depth of field. Furthermore the effect of sample thickness, convergence angle and also channeling will become more and more important especially due to the popular pass-time of analyzing at the atomic level directly down a zone-axis. In terms of systems with probe correctors, the depth of field goes to a number in the nanometer range. Well perhaps a few tens of nanometers...

Jan


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 25 Jul 2011 07:43:39 -0500
Subject: [Microscopy] viaWWW:TomoJ - 3D tomography

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Email: dzhou-at-tcd.ie Name: Dan Zhou

Organization: TCD & CRANN, Ireland

Title-Subject: [Filtered] TomoJ - 3D tomography

Message: Hi, all.

I'm using TomoJ in ImageJ to do 3D tomography. But when I import the
tilt series into ImageJ, the later images will turn very black although
originally it is not.

Any one knows what's wrong and how to solve this?

Thanks in advance.

Dan

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From: Zaluzec-at-aaem.amc.anl.gov
Date: Mon, 25 Jul 2011 08:38:52 -0500
Subject: [Microscopy] Re: viaWWW:TomoJ 3D tomography

Contents Retrieved from Microscopy Listserver Archives
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Dan

The most likely problem is that you have imported an image with a
dc offset or gain setting which does not match the display
and the total range of intensities is outside the display capabilities.

This can happen when for example you import 8 bit images into an 16 bit display mode.

In ImageJ go to the pull down menus

Image-} Adjust-} Brightness/Contrast

Try the Auto setting and see if that fixes your data display range.

Cheers

Nestor
Your Friendly Neighborhood SysOp

===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
Materials Science/Bldg 212
9700 S. Cass Ave.
Argonne, Illinois 60439 USA
Tel: 530-NES-TORZ (530-637-8679)
Fax: 630-252-4798

iChat:Zaluzec-at-AIM
Skype: Zaluzec-at-ANL
TPM: http://tpm.amc.anl.gov

Email: Zaluzec-at-aaem.amc.anl.gov
WWW: http://tpm.amc.anl.gov

Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
Senior Fellow of the Computational Institute - University of Chicago
E.P. Wigner Fellow - Oak Ridge National Laboratory
President: Microscopy Society of America
===========================================







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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 26 Jul 2011 07:39:32 -0500
Subject: [Microscopy] viaWWW:Need part for JEOL 6100

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Email: edsworth-at-aol.com Name: Ed Holdsworth

Organization: SEMTEC Laboratories, Inc. also MAS

Title-Subject: [Filtered] Need part for JEOL 6100

Message: I need a magnification power amplifier (steel box with lots of
stuff in it) for a JEOL 6100. If anybody is piecing out either a JEOL
6100 or a JEOL 820 (not 840) and would like to sell the mag pwr amp,
please contact me off line at 602-276-6138. Thanks!
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 26 Jul 2011 07:41:02 -0500
Subject: [Microscopy] viaWWW:TEM: RDF Software

Contents Retrieved from Microscopy Listserver Archives
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Email: drg.mitchell-at-sydney.edu.au Name: David Mitchell

Organization: University of Sydney

Title-Subject: [Filtered] TEM: RDF Software

Message: Dear Listers
Radial Distribution Function (RDF) analysis is a powerful tool for
understanding structure in amorphous materials. The methods for RDF
analysis of electron diffraction data are well established, although to
the uninitiated they may seem quite daunting. To help demystify the
technique and make its implementation quick and simple, myself and Tim
Petersen have developed a suite of tools for RDF analysis in
DigitalMicrograph (Gatan inc.). The software is called RDFTools and can
be downloaded freely from the following site:

http://www.dmscripting.com/rdftools.html

There is a detailed instruction manual and some sample data to work
through. I hope you find it of interest. Regards, Dave Mitchell
TEM Manager
ACMM, University of Sydney.

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From: dkoleary-at-verizon.net
Date: Tue, 26 Jul 2011 15:54:46 -0500
Subject: [Microscopy] LM NYMS 7 Saturday course on Use of & polarized light Microscopy

Contents Retrieved from Microscopy Listserver Archives
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New YorkMicroscopical Society
Bernard Friedman Memorial Workshops
Use of the Microscope& Polarized Light Microscopy
 September 17, 24, October 1, 8, 15, 22, 29, 2011
 
A basic course on light microscopy which will cover the following topics:
Theory of microscopy, Kohler Illumination
Diffraction Theory, Contrast Methods          
Polarized light, Phase Contrast, Interference     
Hoffman contrast, Rheinberg, Dark-field & oblique Illumination
 
An advanced course on polarized light microscopy which will cover the following topics:
The nature of polarized light
The origin and interpretation of interference colors
Birefringence and crystal orientation,  The Indicatrix
Compensation and variable compensators
Interference figures and their interpretation
 
The workshop will consist of seven consecutive Saturdays of lectures and hands on labs to cover the theoretical and practical aspects of microscopy. The course instructors are Jan Hinsch formerly of Leica Microsystems, Inc., Dennis O’Leary of Micro-Optical Methods, Mary McCann of McCann Imaging, John Reffner of John Jay College and N.Y.M.S. Instructor Don O'Leary.
 
WHEN:          September 17, 24, October 1 ,8, 15, 22, 29, 2011. 10AM to 4 PM
 
WHERE:       One Prospect Village Plaza, Clifton, NJ 07013, accessible by public transportation. Information on car pools and transportation will be provided.)
 
COST:            $695 for NYMS members, $725 for non-members (includes membership) Lunch and course materials are included. Checks made out to NYMS.

HOW:             Register using form below. Limited to the first 12 registrants.      Send form to Don O'Leary, 10 Sampson Street, Unit 113, Saddle Brook, NJ 07663
 
FURTHER INFORMATION:  Call D. O'Leary (201) 368 -8849
E-mail:  dkoleary-at-verizon.net Fax (425) 988-1415
 
PLEASE MAIL THIS APPLICATION WITH YOUR PAYMENT
-------------------------------------------------------------------------
Registration Form Use of the Microscope & Polarized Light Microscopy
N.Y.M.S. Member_________________ ($695)  Non-Member__________($725)
Sept. 17 to Oct. 29
Registration for Use of the Microscope only (4 Sessions)
N.Y.M.S. Member_________________ ($395)  Non-Member__________($425)
Sept. 17 to Oct. 8
Registration for Polarized Light Microscopy Only (4 Sessions)
N.Y.M.S. Member_________________ ($395)  Non-Member__________($425)
Oct. 8 to  29
Name______________________________________________________________________
Address____________________________________________________________________
City___________________________State_________________zip____________
Phone (W)_______________________(H)___________________________
 
e-mail address___________________.
 
Please send your application and payment directly to:
 
NYMS Fall 2011 Courses
c/o Mel Pollinger, Treasurer
18-04 Hillery Street
Fair Lawn, NJ  07410-5207                    


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From: mraderma-at-uvm.edu
Date: Tue, 26 Jul 2011 22:50:39 -0500
Subject: [Microscopy] Sunday short course on 3D EM at M&M meeting 2011

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Dear All,

I would like to make you aware of the Sunday (Aug. 7, 8:30 AM-5 PM)
short course on 3D electron microscopy held at the Microcopy and
Microanalysis meeting Aug 7-11 in Nashville TN. This course should not
only be interesting to biologists, but also for people in the material
sciences field interested in 3D electron microscopy. Registration for
this course is still open
(http://www.microscopy.org/MandM/2011/register.cfm). Description
below.

X14: 3D Electron Microscopy of Macromolecular Assemblies
Teresa Ruiz, Michael Radermacher

This short course will provide a comprehensive description of the
methods used for 3D structure determination of macromolecular
complexes from electron micrographs. First specimen preparation
techniques for single particles (deep stain, vitreous ice), will be
presented and the selection of imaging conditions including low-dose
imaging. This will be followed by a detailed explanation of image
processing techniques with special emphasis on the random conical
reconstruction technique. In the last part structure interpretation
and docking of X-ray structures to 3D EM densities will be demonstrated.

The techniques described have application in both biological and
materials science.

--
Michael Radermacher, Ph.D., Prof.
University of Vermont
Dept. Molecular Physiology and Biophysics
HSRF 120 / 149 Beaumont Ave
Burlington, VT 05405
USA



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 27 Jul 2011 07:14:54 -0500
Subject: [Microscopy] viaWWW:TEM: EELS alingment or GIF CCD problem?

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Email: dzhou-at-tcd.ie Name: Dan

Organization: TCD & CRANN, Ireland

Title-Subject: [Filtered] TEM: EELS alingment or GIF CCD problem?

Message: Hi, all.

I recently really confused by our EELS system here. Anyone can help me
to figure out if it is my alingment or the GIF CCD (or the lenses for
EELS) damaged? Following is the procedure I did and the phenomenon I
observed:
1 I align ZLP and tune GIF CCD in imaging mode. Check the image and
observed image quite like overfocused carbon image while I illuminate a
hole area without anything there.
2 Didn't met that before and didn't think it as abnormal at that stage.
3 Go to spectroscopy mode. The zero loss peak's FWHM is double the value
I checked one day before, but the alignmetn file is the same, nobody use
it between. Play a bit with 'focus x' and 'focus y', the energy
resolution goes to the value I expected. To this stage, the zero loss
peak looks OK.
4 But when I set offset to 500 eV, still hole area, and acquire spectrum
with relative long time without saturate the CCD, it shows irregular
wave with 3-5eV peak continuously.
5 Go back to imaging mode,prepare gain reference, align ZLP, tune GIF,
and go back to spectroscopy mode again. The spectrum I got is still with
irregular wave peaks, which don't belong to the sample energy loss.
Thanks in advance. Dan

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 27 Jul 2011 07:15:23 -0500
Subject: [Microscopy] viaWWW:Microscopy errors

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Email: gary-at-gaugler.com Name: gary gaugler

Title-Subject: [Filtered] Microscopy errors

Message: This is of course very interesting. But I have a totally
different experience that was and has been exasperating.

Filing the PTO Form VA for copyright registration of SEM, LM and
TEM pix, the application was rejected....not once but
several times. VA is visual arts--photographs. Well, the
examiner rejected the application the first time because
an image from a SEM or TEM was not a photograph. In his
view, it was the product of a method of producing images
and hence, was a patent issue. Sigh. There was no optical
glass lens. There was no film (for SEM) but a negative for TEM.

The explanation I gave about how a TEM and SEM "images" were
formed based on scanned or transmitted electrons did not
connect with visual arts. Too technical of an explanation of
how SEMs and TEMs work--oops. Electron optics was a deal killer.

Re-submitted and hope to get a different person. Nope. OK.
Change the submission title. Re-submit. Now waiting for
several months. Patents are backed-up too as I hear.

An objective lens made from copper wire? That did not fly.
No shutter or flap mirror. No viewing prism. Registration
denied. Finally, sanity should prevail.

gary g.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 27 Jul 2011 14:37:31 -0500
Subject: [Microscopy] viaWWW:insect ovaries

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Email: lisa.whitworth-at-okstate.edu Name: Lisa Whitworth

Organization: Oklahoma State University

Title-Subject: [Filtered] insect ovaries

Message: Hello,
I am having a difficult time infiltrating ovaries from hawk moths. I
tried Spurr's and Poly Bed 812 with 3:1 propylene oxide for up to 7
days, then 1:1, then 100% resin. I have not found much reference
material, but 2 of the references I have found cite the use of these
resins, but without much detail. One reference suggests LR White
polymerized at 50oC under nitrogen.

If anyone has any experience with this and can give me some advice, I
would greatly appreciate it!

thank you,
Lisa

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 27 Jul 2011 14:38:04 -0500
Subject: [Microscopy] viaWWW:Epon Thick Sections Are Rolling-up

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Email: kcildavis02-at-gmail.com Name: Christie Davis

Title-Subject: [Filtered] Epon Thick Sections Are Rolling-up

Message: Does anyone have suggestions on how to get epon thick sections
(4 microns) to stop rolling up? We've played with the water level and
the sectioning speed, but they still roll. Thank you!

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 27 Jul 2011 14:38:49 -0500
Subject: [Microscopy] viaWWW:TEM_Postdoctoral-level Electron Microscopist Position Available

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Email: ttxu-at-uncc.edu Name: Terry Xu

Organization: UNC Charlotte

Title-Subject: [Filtered] TEM_Postdoctoral-level Electron Microscopist
Position Available

Message: The University of North Carolina at Charlotte (UNC Charlotte)
is seeking a postdoctoral-level electron microscopist to lead the
operation and the user program of the Transmission Electron Microscopy
lab. The start date of this position is January 2012.

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From: PhillipsT-at-missouri.edu
Date: Wed, 27 Jul 2011 14:42:19 -0500
Subject: [Microscopy] Subject: [Filtered] Epon Thick Sections Are Rolling-up

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4 microns is a pretty thick Epon section. Is there a reason you don't want to do 1 micron which is more standard?


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/




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From: connellyps-at-nhlbi.nih.gov
Date: Wed, 27 Jul 2011 15:46:04 -0400
Subject: [Microscopy] viaWWW:Epon Thick Sections Are Rolling-up

Contents Retrieved from Microscopy Listserver Archives
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Christie,

As mentioned in another reply the standard is about 1 micron.

It is difficult to get anything over 2 microns to stick to a slide during
staining. You will not get good stain all the way through 4 microns.

Let us know more about your project .
Why are you attempting 4 microns?

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E ­ Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not
represent the NIH. This message is not confidential and can be freely shared
and reproduced.


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Email: kcildavis02-at-gmail.com Name: Christie Davis

Title-Subject: [Filtered] Epon Thick Sections Are Rolling-up

Message: Does anyone have suggestions on how to get epon thick sections
(4 microns) to stop rolling up? We've played with the water level and
the sectioning speed, but they still roll. Thank you!

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 27 Jul 2011 16:57:46 -0500
Subject: [Microscopy] viaWWW:Biosample in TEM 80 KV and 200 KV

Contents Retrieved from Microscopy Listserver Archives
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Sounds like a project that would be better suited for paraffin.


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


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Email: marcela.redigolo-at-mail.wvu.edu Name: Marcela Redigolo

Organization: WVU SRF

Title-Subject: [Filtered] Biosample in TEM 80 KV and 200 KV

Message: Dear all:

We have one user that prepares his biological tissues in resin and then
cut them for TEM studies. He has been using a 80KV TEM for that, but
that TEM does't have digital camera and he wants to start using ours.

We have a JEOL 2100 TEM operating at 200KV. We can run the sample and do
some imaging while playing a bit with the settings of the scope, but
still in some cases the sample ends up burning. I'm not experienced with
biological samples.

Is there a different sample preparation he should look for, or maybe
change his resin or do cryo-cut, before coming to our scope, or is there
a certain group of settings I should work with for this particular case?
Thanks for any help.

Marcela.


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From: rcsencsits-at-lbl.gov
Date: Wed, 27 Jul 2011 18:07:05 -0500
Subject: [Microscopy] Re: Biosample in TEM 80 KV and 200 KV

Contents Retrieved from Microscopy Listserver Archives
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Hi Marcela,

By burning do you mean bubbling or exploding sections? Sometimes a thin carbon coating of the section will improve things greatly, even if the sections are on carbon coated formvar or lacey film supports. I can use a 10 nm STEM probe in a 2100F for EDS linescans and maps of biological sections-- if carbon coated. Without the carbon coating the films can explode under the beam.

In TEM mode I tend to use spot sizes 3-5 to minimize beam exposure/damage.

I do not believe a cryo cut would be of any value. A small objective aperture will help prevent/balance charging effects. How thick are the sections? I generally find 150-250 nm quite fine.

I grew up in the Materials world and now manage a structural biology TEM facility. HAADF STEM can be a great way to image biological low contrast samples.

Best regards,
Roseann

Roseann Csencsits, PhD
Manager Donner TEM Facility
Lawrence Berkeley Lab 01-365
1 Cyclotron Road
Berkeley, CA 94720
510-486-4548


On Jul 27, 2011, at 3:03 PM, microscopylistserver-noreply-at-microscopy.com wrote:

} Email: marcela.redigolo-at-mail.wvu.edu Name: Marcela Redigolo
}
} Organization: WVU SRF
}
} Title-Subject: [Filtered] Biosample in TEM 80 KV and 200 KV
}
} Message: Dear all:
}
} We have one user that prepares his biological tissues in resin and then
} cut them for TEM studies. He has been using a 80KV TEM for that, but
} that TEM does't have digital camera and he wants to start using ours.
}
} We have a JEOL 2100 TEM operating at 200KV. We can run the sample and do
} some imaging while playing a bit with the settings of the scope, but
} still in some cases the sample ends up burning. I'm not experienced with
} biological samples.
}
} Is there a different sample preparation he should look for, or maybe
} change his resin or do cryo-cut, before coming to our scope, or is there
} a certain group of settings I should work with for this particular case?
} Thanks for any help.
}
} Marcela.
}


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From: protrain-at-emcourses.com
Date: Thu, 28 Jul 2011 03:25:16 -0500
Subject: [Microscopy] RE: viaWWW:Biosample in TEM 80 KV and 200 KV

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Marcela

Your 200kV microscope will work very well down at 80kV and when you return
to 200kV it will regain its absolute stability quite quickly.

I had a similar incident with a client who also worried about changing from
their 200kV JEOL. I had the client take test pictures of the gold lattice
from 200kV down to 80kV in 20kV steps; she was 100% successful!

Enjoy

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com


-----Original Message-----


Email: marcela.redigolo-at-mail.wvu.edu Name: Marcela Redigolo

Organization: WVU SRF

Title-Subject: [Filtered] Biosample in TEM 80 KV and 200 KV

Message: Dear all:

We have one user that prepares his biological tissues in resin and then
cut them for TEM studies. He has been using a 80KV TEM for that, but
that TEM does't have digital camera and he wants to start using ours.

We have a JEOL 2100 TEM operating at 200KV. We can run the sample and do
some imaging while playing a bit with the settings of the scope, but
still in some cases the sample ends up burning. I'm not experienced with
biological samples.

Is there a different sample preparation he should look for, or maybe
change his resin or do cryo-cut, before coming to our scope, or is there
a certain group of settings I should work with for this particular case?
Thanks for any help.

Marcela.


Login Host: 157.182.80.244
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From: W.Muss-at-salk.at
Date: Thu, 28 Jul 2011 05:30:03 -0500
Subject: [Microscopy] Re: Epon Thick Sections Are Rolling-up [ sponge ==>sounds like a project better suited for paraffin ?

Contents Retrieved from Microscopy Listserver Archives
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Dear Christine Davis,
dear listers,

since we know a little bit more about the basics of the original question (Thanks to Prof. Phillips's posting!), i.e.
sponge containing loosely, and therefore only little distributed organic matter in a normal 1 µm semithin section) I would like to chime in...

For me there are several questions:
ia) did the sections roll up at 1µm thickness too?
ib) what is the current block face area you try to section?

iia) no question about 4 µm a little bit too thick IMO,
iib) what about sectioning speed, use of diamond knife/glass knife, and esp. sectioning angle of knife/knives

iiia) since much blank resin seems to be contained in the block/section therefore - one should think about the chosen hardness of the resin (should be adapted to the hardness of sponge structure(s), are there calcified structures included or were samples decalcified prior to embedding?)
iiib) what about penetration quality of resin into the sample?

iv) I have serially sectioned (in the "primitive times" of my dissertation) rat brain (+/- whole hypothalamus, at least up to 3x4 mm sectioning area) at 2 µm routinely for 2D-3D reconstruction (at that time using "ordinary" glass knives: neither a problem with sectioning or adhesion as well as staining afterwards with a "crude" 3 step LM staining method (chrome-alum-gallocyanin stain), but had to
iva) adjust resin to really SOFT as well as (I was able to section 10-15 consecutive sections -at- 2µm with ONE glass knife)
Oh, yes...BTW...for sure knowing about the differences between soft brain and {hard} sponge tissue.. but since with my brain samples the whole space of the third ventricle had to be included there also was much blank resin in the sections...
ivb) to pretreat slides (subbing) with (if I recall this correctly) chrome-alum-gelatine (==} cf. http://stainsfile.info/StainsFile/prepare/adhesives/chromegelatin.htm ) for this task.

v) IMHO, the advantage of "more material" to be seen in a section by making the section thicker will go against "resolution" if you are going to view at higher mag. or document by micrographs.

vi) therefore either you have to accept the material included in the section is low in quantity, as well as morphological detail (suggest or compare e.g. with {hydra} samples??) and you have eventually to section serially with high quality OR you collect every say 10th section (or collecting randomly, following "stereological" = mathematical principles) or
vii) you go better (as Tom pointed out) if you try another technique (e.g. EM-Fixation and Dehydration as usual, followed by paraffin embedding, thick sectioning, overview-staining and IF you need special LM or EM then on a respective, interesting location in the section, you could re-embed that thick section into resin without difficulties or use another resin, like (Kulzer)Technovit (c),TM),
cf.: http://www.immunologie-labor.com/cellmarker_files/IET_tissue_05.pdf, KUHLMANN 2008...ok: no reference for 4µm resin thick sections but rather infos on microtoming issues).

As an alternative, try to find references for such a task [google: { 4 µm semithin resin sections } ]
e.g.
http://jcp.bmj.com/content/58/9/897.full
J Clin Pathol 2005;58:897-903 doi:10.1136/jcp.2004.023788
How we process trephine biopsy specimens: epoxy resin embedded bone marrow biopsies
T Krenacs, E Bagdi, E Stelkovics, L Bereczki, L Krenacs

or also
http://www.sciencedirect.com/science/article/pii/0047720679900086
Micron (1969)
Volume 10, Issue 2, 1979, Pages 145-147
A rapid method for resectioning of semithin large epoxy sections for electron microscopy [6 µm sections!]
W. I. Butcher, R. E. Schmidt, F. A. Elias and M. J. Hammond


Nevertheless, for your quite nasty task: all the best and good luck!

Regards,
Wolfgang Muss
SALZBURG-AUSTRIA







} -----Ursprüngliche Nachricht-----
} Von: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
} Gesendet: Mittwoch, 27. Juli 2011 23:44
} An: Muß Wolfgang
} Betreff: [Microscopy] Re: Epon Thick Sections Are Rolling-up
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} Sounds like a project that would be better suited for paraffin.
}
}
} Thomas E. Phillips, Ph.D
} Professor of Biological Sciences
} Director, Molecular Cytology Core
} 2 Tucker Hall
} University of Missouri
} Columbia, MO 65211-7400
} 573-882-4712 (office)
} 573-882-0123 (fax)
} phillipst-at-missouri.edu
}
} http://www.biology.missouri.edu/faculty/phillips.html
} http://www.biotech.missouri.edu/mcc/
}
}
} X-from: Christine Davis [mailto:kcildavis02-at-gmail.com]
} Sent: Wednesday, July 27, 2011 3:30 PM
} To: Phillips, Thomas E.
} Subject: Re: Subject: [Filtered] Epon Thick Sections Are Rolling-up
}
} The researcher is looking at sponge which isn't very dense and they
} don't see enough tissue at 1 micron.
}
} Thank you!
} Christie
} On Wed, Jul 27, 2011 at 3:41 PM, Phillips, Thomas E.
} {PhillipsT-at-missouri.edu} wrote:
} 4 microns is a pretty thick Epon section. Is there a reason you don't
} want to do 1 micron which is more standard?
}
} Thomas E. Phillips, Ph.D
} Professor of Biological Sciences
} Director, Molecular Cytology Core
} 2 Tucker Hall
} University of Missouri
} Columbia, MO 65211-7400
} 573-882-4712 (office)
} 573-882-0123 (fax)
} phillipst-at-missouri.edu
}
} http://www.biology.missouri.edu/faculty/phillips.html
} http://www.biotech.missouri.edu/mcc/
}
}
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From: eschumacher-at-mccrone.com
Date: Thu, 28 Jul 2011 07:50:16 -0500
Subject: [Microscopy] RE: viaWWW:Biosample in TEM 80 KV and 200 KV

Contents Retrieved from Microscopy Listserver Archives
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Hello Steve and Fellow Listers,

Just to add what may be an obvious note about operating at a lower accelerating voltage. If the 2100 has never been aligned at anything other than 200kV, you may need to have a service engineer in to do initial alignments at lower voltages. When our JEOL JEM-3010 was installed, the engineers did alignments at 50kV intervals from 50 to 300kV and stored those values for future use. On the rare occasions when I use a lower accelerating voltage, I just have to do some minor touch-up to the alignment. Also, you'll want to check your magnification calibration at the lower accelerating voltage.

Regards,

Elaine

*********************************************************************
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630-887-7100 (tel)
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E-mail: eschumacher-at-mccrone.com
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-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: Thursday, July 28, 2011 3:35 AM
To: Elaine F. Schumacher

Dear Marcela

Your 200kV microscope will work very well down at 80kV and when you return
to 200kV it will regain its absolute stability quite quickly.

I had a similar incident with a client who also worried about changing from
their 200kV JEOL. I had the client take test pictures of the gold lattice
from 200kV down to 80kV in 20kV steps; she was 100% successful!

Enjoy

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com


-----Original Message-----


Email: marcela.redigolo-at-mail.wvu.edu Name: Marcela Redigolo

Organization: WVU SRF

Title-Subject: [Filtered] Biosample in TEM 80 KV and 200 KV

Message: Dear all:

We have one user that prepares his biological tissues in resin and then
cut them for TEM studies. He has been using a 80KV TEM for that, but
that TEM does't have digital camera and he wants to start using ours.

We have a JEOL 2100 TEM operating at 200KV. We can run the sample and do
some imaging while playing a bit with the settings of the scope, but
still in some cases the sample ends up burning. I'm not experienced with
biological samples.

Is there a different sample preparation he should look for, or maybe
change his resin or do cryo-cut, before coming to our scope, or is there
a certain group of settings I should work with for this particular case?
Thanks for any help.

Marcela.


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From: belfry-at-unb.ca
Date: Thu, 28 Jul 2011 08:11:00 -0500
Subject: [Microscopy] Re: Biosample in TEM 80 KV and 200 KV

Contents Retrieved from Microscopy Listserver Archives
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Hi Marcela,
I also needed to adapt biological sections for use in a 200 KV TEM. I
routinely purchase carbon/formvar-coated copper grids (200 mesh) and
collect the sections on the 'light' non-carbon side of the grid (less
phobic and easier to collect sections from the boat water). The
stability of the carbon plus support film permits the use of thinner
sections (less than 70 nm) and there is less drift of the material under
the electron beam. The electron beam can be focused to a fine spot on
these grids for making height adjustment and for x-ray analysis. I did
not like carbon-only coated grids because of the increased background
texture.

I stopped trying to make these grids myself - the time involved and
inconsistent quality of my homemade grids were not worth it. The
increased grid cost is offset by your reduced photography cost.

Changing KV to 120 in the instrument required additional magnification
calibrations and although this may improve contrast in the biological
material on the screen, the digital camera we use provides excellent
contrast in the final image. So depending on the camera and your final
images, a lower KV may improve contrast but I would definitely recommend
carbon/formvar-coated grids.

Regards, Susan Belfry


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Hi Marcela,

By burning do you mean bubbling or exploding sections? Sometimes a thin
carbon coating of the section will improve things greatly, even if the
sections are on carbon coated formvar or lacey film supports. I can use
a 10 nm STEM probe in a 2100F for EDS linescans and maps of biological
sections-- if carbon coated. Without the carbon coating the films can
explode under the beam.
In TEM mode I tend to use spot sizes 3-5 to minimize beam exposure/damage.

I do not believe a cryo cut would be of any value. A small objective
aperture will help prevent/balance charging effects. How thick are the
sections? I generally find 150-250 nm quite fine.

I grew up in the Materials world and now manage a structural biology TEM
facility. HAADF STEM can be a great way to image biological low
contrast samples.

Best regards,
Roseann

Roseann Csencsits, PhD
Manager Donner TEM Facility
Lawrence Berkeley Lab 01-365
1 Cyclotron Road
Berkeley, CA 94720
510-486-4548


On Jul 27, 2011, at 3:03 PM, microscopylistserver-noreply-at-microscopy.com
wrote:

} Email: marcela.redigolo-at-mail.wvu.edu Name: Marcela Redigolo
}
} Organization: WVU SRF
}
} Title-Subject: [Filtered] Biosample in TEM 80 KV and 200 KV
}
} Message: Dear all:
}
} We have one user that prepares his biological tissues in resin and then
} cut them for TEM studies. He has been using a 80KV TEM for that, but
} that TEM does't have digital camera and he wants to start using ours.
}
} We have a JEOL 2100 TEM operating at 200KV. We can run the sample and do
} some imaging while playing a bit with the settings of the scope, but
} still in some cases the sample ends up burning. I'm not experienced with
} biological samples.
}
} Is there a different sample preparation he should look for, or maybe
} change his resin or do cryo-cut, before coming to our scope, or is there
} a certain group of settings I should work with for this particular case?
} Thanks for any help.
}
} Marcela.
}

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From: Marcela.Redigolo-at-mail.wvu.edu
Date: Thu, 28 Jul 2011 08:11:57 -0500
Subject: [Microscopy] RE: viaWWW:Biosample in TEM 80 KV and 200 KV

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Dear all:


Thanks for all the replies and many suggestions.
We indeed never worked with the scope at 80KV and you are correct, Elaine.
The alignment is way off. Still, I'll keep this idea in mind. It will be very helpful to have the scope
operating on both accelerating voltages. But before doing this, I'll try many other ideas that
were suggested for this biosample in particular.


Thanks again to all for your replies. I really appreciate!


Kindest regards,


Marcela.




} } } 07/28/11 9:01 AM } } }



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Hello Steve and Fellow Listers,

Just to add what may be an obvious note about operating at a lower accelerating voltage. If the 2100 has never been aligned at anything other than 200kV, you may need to have a service engineer in to do initial alignments at lower voltages. When our JEOL JEM-3010 was installed, the engineers did alignments at 50kV intervals from 50 to 300kV and stored those values for future use. On the rare occasions when I use a lower accelerating voltage, I just have to do some minor touch-up to the alignment. Also, you'll want to check your magnification calibration at the lower accelerating voltage.

Regards,

Elaine

*********************************************************************
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Senior Research Scientist
McCrone Associates, Inc.
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630-887-7417 (fax)
E-mail: eschumacher-at-mccrone.com
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-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: Thursday, July 28, 2011 3:35 AM
To: Elaine F. Schumacher

Dear Marcela

Your 200kV microscope will work very well down at 80kV and when you return
to 200kV it will regain its absolute stability quite quickly.

I had a similar incident with a client who also worried about changing from
their 200kV JEOL. I had the client take test pictures of the gold lattice
from 200kV down to 80kV in 20kV steps; she was 100% successful!

Enjoy

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com


-----Original Message-----


Email: marcela.redigolo-at-mail.wvu.edu Name: Marcela Redigolo

Organization: WVU SRF

Title-Subject: [Filtered] Biosample in TEM 80 KV and 200 KV

Message: Dear all:

We have one user that prepares his biological tissues in resin and then
cut them for TEM studies. He has been using a 80KV TEM for that, but
that TEM does't have digital camera and he wants to start using ours.

We have a JEOL 2100 TEM operating at 200KV. We can run the sample and do
some imaging while playing a bit with the settings of the scope, but
still in some cases the sample ends up burning. I'm not experienced with
biological samples.

Is there a different sample preparation he should look for, or maybe
change his resin or do cryo-cut, before coming to our scope, or is there
a certain group of settings I should work with for this particular case?
Thanks for any help.

Marcela.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 28 Jul 2011 08:35:22 -0500
Subject: [Microscopy] viaWWW:Epon Thick Sections Are Rolling-up

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Email: kcildavis02-at-gmail.com Name: Christie Davis

Title-Subject: [Filtered] Epon Thick Sections Are Rolling-up

Message: Thank you for your suggestions and patience as I learn to use
the list server! HereÂ’s the project info so far as IÂ’ve learned:
The material is sponge with spicules, the researcher does want 4-5
micron thick sections, and we use a histo diamond knife.
We trim to 2 mm size trapezoids. The lab has been doing this for a
few years, but the two students who mainly work on the project are away
this summer and the person who supervised them left the institution. We
also bought a new epon kit and theyÂ’re epon recipe doesnÂ’t allow for the
WPE change as mine does so the block composition has possibly changed.
I think itÂ’s softer.
IÂ’m teaching students who have never sectioned anything before and IÂ’ve
never done such thick epon sections. The toluidine blue (2.9% w/v) with
borax (2.7% w/v) penetrates the entire 5 microns without a problem.
Pre-warmed Superfrosted slides must be used to hold the sections and we
wash with 95%Etoh then 50% Etoh then water. They seem to stick fine,
but you must be careful on the water step.
The sections tend to only curve slightly when I do it by hand or when I
play with the water and speed to get it just right. I think experience
will help the students some.
They have done extremely large square block faces and 5-micron sections
in the past (over 4mm), but have blown through the histo knife. When
asked, I suggested going to 4 microns and smaller block faces to help
stretch the knife life.
So as you can see a lot has changed in the project so pinpointing the
solution might be difficult. The solution might also just be experience
since I can cope better than the students. I never got to try the old
epon, but I suspect that change is important also.
Does anyone think the square shape would be better? Thank you again and
I hope the details help.



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From: carlos.inoki-at-lnls.br
Date: Thu, 28 Jul 2011 09:49:15 -0500
Subject: [Microscopy] TEM: Tvips EM-Menu TIFF and Gatan Digital Micrograph DM3

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Dear Fellows,

We are a long time user of Gatan Digital Micrograph (DM), including several plug-ins that are available for it. We did install a new ccd camera from Tvips in one of our TEMs, and obviously it uses a different image file format. It is a kind of proprietary 16 bit tiff with a 512 bit header. We are able to open the tiff image in the DM, but the calibration is lost. We can extract the calibration from the tiff with another program and fix calibration of the image in the DM. The problem is when you have a batch of images and it is a pain to do this task manually. With no calibration the image is useless.

I was wondering if someone has already solved this problem and have a script to this task on DM. Open a Tvips tiff file and correct calibration. There is a script that does the opposite, batch convert DM3 files to standard tiff. I just don't want to reinvent the wheel. Before someone mentions, I already did took a look at the DMScripting webpage.

Thanks,

Carlos

__
Carlos Kazuo Inoki
Laboratório Nacional de Nanotecnologia
Caixa Postal 6192
Campinas, SP
13083-970
Brazil

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 28 Jul 2011 19:20:16 -0500
Subject: [Microscopy] viaWWW:Looking for a used Digiscan I

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Email: csown-at-beamdevices.com Name: Chris Own

Organization: BeamDevices, Inc

Title-Subject: [Filtered] Looking for a used Digiscan I

Message: Hi,

I am interested in obtaining a used Gatan Digiscan I for interfacing
with an SEM. I'm wondering if anybody on the listserv might have an
extra one sitting around in a closet in their lab gathering dust that
they'd be willing to part with. If you have one, please contact me.

Thank you!

Dr. Chris Own

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From: John.Mardinly-at-asu.edu
Date: Fri, 29 Jul 2011 01:41:10 -0500
Subject: [Microscopy] M and M 2011 Program

Contents Retrieved from Microscopy Listserver Archives
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Has anybody tried to download a copy of the program from the Cambridge Journals web site? It displays on line as a Flash publication. There is an off-line version that can be downloaded, but it does not work on an ipad. There is a help menu that says any page range can be printed, but when I try to print it, it only allows 15 pages at a time to be printed, which is a pain because there are over 200 pages, and Flash crashes every time anyway when i try to print to PDF. What I really need it is PDF so I can load it onto my iPad and/or iPhone. Does anyone know how do do this? Is Cambridge going to post a more useful version? I am not going to put it on my laptop because my laptop weighs more than the printed version. Can we save some trees here?

John Mardinly
ASU

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From: jmircheski-at-us.es
Date: Fri, 29 Jul 2011 06:35:30 -0500
Subject: [Microscopy] Sodium ethoxide

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thanks Tom,

I knew it was so complicated...

Best,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es


-----Original Message-----
X-from: Phillips, Thomas E. [mailto:PhillipsT-at-missouri.edu]
Sent: Thursday, July 21, 2011 4:29 PM
To: jmircheski-at-us.es; microscopy-at-microscopy.com

Dear Listers,

I need to etch some Epon from my blocks, and I intended using Sodium
Ethoxide for that. Unfortunately, I can't find the detailed protocol that I
used (only once) several years ago. Can anyone provide a detailed protocol
for the preparation, please?
Thanks,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es





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From: jmircheski-at-us.es
Date: Fri, 29 Jul 2011 07:40:17 -0500
Subject: [Microscopy] EPON in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

Thank you very much for your advices and help. I tried to image epon block
faces, but without success. We used two microscopes, a JEOL 6460LV and a
higher resolution Hitachi S5200. There were no environmental SEM nor a SEM
with a microtome available. We used coated and uncoated blocks, combined
with etched and unetched resin. The result was always the same - zero, or
close to zero.
Now, after re-reading your messages, I see that many of you (Derrick, Zack,
Ed...) suggest coating with CARBON, and we coated with GOLD. Two reasons for
our choice of gold: the carbon coater is broken, and the SEM technician has
little experience in biological samples (I have 0 experience in SEM) and
assumed that it will be fine with the gold.
Well, now I have to wait until September for people to come back from
vacations, and don't know till when until the carbon coater is repaired...
Then maybe I can tell you if it was successful.

The question: what do you think, was the gold the reason that we couldn't
see any fibres at the block surface? Will carbon alleviate the situation?

And one additional, maybe worthy of another topic: the intention of the
"epon in SEM" was to check these blocks under SEM, so that we can use them
later in a FIB/SEM. Is there anyone experienced in FIB/SEM? If so, have you
ever tried to use epon blocks/sections?

Thanks again to everyone.

Regards from Sevilla, I'm freezing here (it's only 32ºC)

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es


-----Original Message-----
X-from: Haller, Edward [mailto:ehaller-at-health.usf.edu]
Sent: Thursday, July 21, 2011 9:19 PM
To: jmircheski-at-us.es; Microscopy-at-microscopy.com

One more question for today:
Has anyone examined EPON blocks in a SEM? I tried to image my muscle samples
embedded in EPON with a SEM. (the same block was previously used for
ultra-thin sections, so its surface was pretty flat). The only thing I could
see were brighter than background spots representing the muscle fibres.
I'll try to remove some resin from the surface with sodium ethoxide, so that
only the sample "sticks out" a little bit over the resin, unembedded.
Has anyone else done something similar (seeing EPON blocks in SEM)? Could
you please share your experience?

Thanks again,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain

Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es





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From: dsherman-at-purdue.edu
Date: Fri, 29 Jul 2011 07:43:25 -0500
Subject: [Microscopy] Re: M and M 2011 Program

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I agree...let's make this user friendly with modern communication devices.
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/


} From: "John.Mardinly-at-asu.edu" {John.Mardinly-at-asu.edu}
} Reply-To: "John.Mardinly-at-asu.edu" {John.Mardinly-at-asu.edu}
} Date: Fri, 29 Jul 2011 02:42:50 -0400
} To: Debby Sherman {dsherman-at-purdue.edu}
} Subject: [Microscopy] M and M 2011 Program
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
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}
} Has anybody tried to download a copy of the program from the Cambridge
} Journals web site? It displays on line as a Flash publication. There is an
} off-line version that can be downloaded, but it does not work on an ipad.
} There is a help menu that says any page range can be printed, but when I try
} to print it, it only allows 15 pages at a time to be printed, which is a pain
} because there are over 200 pages, and Flash crashes every time anyway when i
} try to print to PDF. What I really need it is PDF so I can load it onto my
} iPad and/or iPhone. Does anyone know how do do this? Is Cambridge going to
} post a more useful version? I am not going to put it on my laptop because my
} laptop weighs more than the printed version. Can we save some trees here?
}
} John Mardinly
} ASU
}
} ==============================Original Headers==============================
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5, 31 -- From dsherman-at-purdue.edu Fri Jul 29 07:43:25 2011
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From: zaluzec-at-aaem.amc.anl.gov
Date: Fri, 29 Jul 2011 01:41:10 -0500
Subject: [Microscopy] M and M 2011 Program

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

John

I have contacted Cambridge about this a few days ago
as I discovered the same issues with the Flash version of EXPO.

Cambridge has promised a full PDF downloadable version on-line
in a few days. Hopefully it will be there by this coming Monday (7/1).

Nestor
Your Friendly Neighborhood SysOp
&
President - Microscopy Society of America





-------- Original Message --------

Has anybody tried to download a copy of the program from the Cambridge
Journals web site? It displays on line as a Flash publication. There is
an off-line version that can be downloaded, but it does not work on an
ipad. There is a help menu that says any page range can be printed, but
when I try to print it, it only allows 15 pages at a time to be printed,
which is a pain because there are over 200 pages, and Flash crashes
every time anyway when i try to print to PDF. What I really need it is
PDF so I can load it onto my iPad and/or iPhone. Does anyone know how do
do this? Is Cambridge going to post a more useful version? I am not
going to put it on my laptop because my laptop weighs more than the
printed version. Can we save some trees here?

John Mardinly
ASU

==============================Original Headers==============================
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From: ehaller-at-health.usf.edu
Date: Fri, 29 Jul 2011 08:57:27 -0500
Subject: [Microscopy] EPON in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Josif,

You can attempt to view your block using a low accelerating voltage and not coating the block if you have a field-emission SEM. With the Hitachi S5200, you might be able to image at a few kV in backscattered mode uncoated and not melt the epon. It is worth a try. As soon as you coat with gold, you will cover everything in the block, and will see nothing inside the block unless it has a higher atomic number than the gold itself, or unless it is physically sticking out of the surface of the block. With the FIB, although I don't use one, you may be able to preferentially etch away the epon to get some surface relief of the tissue, since the tissue is osmium fixed, it may be slightly harder than the plastic, and may resist etching a bit. I haven't tried this. If that's the case, then you could lightly coat with gold. You might have to explore etching at different angles to do this.

Ed

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
X-from: Josif Mircheski [jmircheski-at-us.es]
Sent: Friday, July 29, 2011 8:40 AM
To: Haller, Edward; microscopy-at-microscopy.com

One more question for today:
Has anyone examined EPON blocks in a SEM? I tried to image my muscle samples
embedded in EPON with a SEM. (the same block was previously used for
ultra-thin sections, so its surface was pretty flat). The only thing I could
see were brighter than background spots representing the muscle fibres.
I'll try to remove some resin from the surface with sodium ethoxide, so that
only the sample "sticks out" a little bit over the resin, unembedded.
Has anyone else done something similar (seeing EPON blocks in SEM)? Could
you please share your experience?

Thanks again,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain

Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es





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From: ech-at-uvic.ca
Date: Fri, 29 Jul 2011 08:57:54 -0500
Subject: [Microscopy] Re: Fwd: M and M 2011 Program - online Version

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Nestor
I haven't seen any comments about the on-line version.

It is excellent. They did a really good job.
http://content.yudu.com/A1sxh8/MAMv17s1/resources/index.htm?referrerUrl=http%3A%2F%2Fjournals.cambridge.org%2Faction%2FdisplayJournal%3Fjid%3DMAM

The bookmarks and the search engine work very well.

Do you know what program they use to do this?
Elaine

} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America


--
Dr. Elaine C. Humphrey
STEHM Technologist and Lab Manager
Bob Wright Science Centre A015
Advanced Microscopy Facility
University of Victoria, Canada

Lab: 250-853-3968
cell: 250-886-2068
website: http://www.stehm.uvic.ca

==============================Original Headers==============================
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From: frank_karl-at-ardl.com
Date: Fri, 29 Jul 2011 12:01:35 -0500
Subject: [Microscopy] pax-it software

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Everyone,
I'm using Pax-it software to capture images and make measurements on my stereomicroscope but I'm having trouble with calibrating the images.

If I take an image of a mm ruler, run the calibration routine on a distance of 5mm and then take the same image, and measure the same distance I get 4.5mm. Now I'm using the same side of the markers. I get this effect if I close the calibrated image and then reopen it. I've recalibrated, restarted the software and the computer and get the same results.

We did a Pax-on line conference, the service guy got to work, but as soon as we signed off and I repeated his step we were back to getting 4.5 or 4.8 for a actual 5mm span.

Any Pax-it users with suggestions?

Frank Karl
Microscopist



________________________________
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From: zaluzec-at-aaem.amc.anl.gov
Date: Sat, 30 Jul 2011 08:37:13 -0500
Subject: [Microscopy] Re: M and M 2011 Program online Version

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Elaine

The on-line page turning version of EXPO is written/done using FLASH,
and was done by the team at Cambridge University Press.

I concur it works well (even on my Desktop Mac).

Flash is not supported on a number of Apple OS platforms
(iPad, iPhone ....) and since many of us carry portable HW to the
meeting this is an issue. A downloadable PDF version will fix this issue.

Cambridge will have a full PDF version available for download shortly.
When that happens we will post an update on the MM2011 & Journal WWW
sites and I will also see to it that the Listserver subscribers are
notified.

Just to confirm, all attendee's at M&M2011 will receive a printed copy
of the EXPO. This will include a DVD of the Full M&M Proceedings with
all the manuscripts. Electronic download of manuscripts will also be
available on-line through the Journal Web site, after the meeting opens.

Lastly, as long as I'm churning out details, a hard copy of the
Proceedings, for those of you like me who still like to have a printed
book, is available via Print-on-Demand service. Details available on
the Registration Page, at the Meeting or via Cambridge Press.

Hope to see many of you in about at week in Nashville, still plenty
of time to register (Nestor takes off his M&M/MSA PR hat now ...)

Cheers,
Nestor
Your Friendly Neighborhood SysOp.





On 7/29/11 8:57 AM, ech-at-uvic.ca wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Nestor
} I haven't seen any comments about the on-line version.
}
} It is excellent. They did a really good job.
} http://content.yudu.com/A1sxh8/MAMv17s1/resources/index.htm?referrerUrl=http%3A%2F%2Fjournals.cambridge.org%2Faction%2FdisplayJournal%3Fjid%3DMAM
}
} The bookmarks and the search engine work very well.
}
} Do you know what program they use to do this?
} Elaine
}
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } John
} }
} } I have contacted Cambridge about this a few days ago
} } as I discovered the same issues with the Flash version of EXPO.
} }
} } Cambridge has promised a full PDF downloadable version on-line
} } in a few days. Hopefully it will be there by this coming Monday (7/1).
} }
} } Nestor
} } Your Friendly Neighborhood SysOp
} } &
} } President - Microscopy Society of America
} }
} }
} }
} }
} }
} } -------- Original Message --------
} } Subject: [Microscopy] M and M 2011 Program
} } Date: Fri, 29 Jul 2011 01:41:10 -0500
} } X-from: John.Mardinly-at-asu.edu
} } Reply-To: John.Mardinly-at-asu.edu
} } To: Nestor_Zaluzec-at-microscopy.com
} }
} }
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Has anybody tried to download a copy of the program from the Cambridge
} } Journals web site? It displays on line as a Flash publication. There is
} } an off-line version that can be downloaded, but it does not work on an
} } ipad. There is a help menu that says any page range can be printed, but
} } when I try to print it, it only allows 15 pages at a time to be printed,
} } which is a pain because there are over 200 pages, and Flash crashes
} } every time anyway when i try to print to PDF. What I really need it is
} } PDF so I can load it onto my iPad and/or iPhone. Does anyone know how do
} } do this? Is Cambridge going to post a more useful version? I am not
} } going to put it on my laptop because my laptop weighs more than the
} } printed version. Can we save some trees here?
} }
} } John Mardinly
} } ASU
} }
}
}

--
===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
Materials Science/Bldg 212
Argonne, Illinois 60439 USA

Tel: 1-530-NES-TORZ (1-530-637-8679)
Fax: 1-630-252-4798

Email: Zaluzec-at-aaem.amc.anl.gov

iChat:Zaluzec-at-AIM
Skype: Zaluzec
TPM: http://tpm.amc.anl.gov
WWW: http://www.amc.anl.gov

Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
E.P. Wigner Fellow - Oak Ridge National Laboratory
Senior Fellow of the Computational Institute - University of Chicago
President Microscopy Society of America

===========================================

The box said ...
"This program requires Win 95/98/NT/2K/XP/Vista or better..."
So I bought a Mac !

===========================================

==============================Original Headers==============================
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From: d.sokolov-at-massey.ac.nz
Date: Mon, 1 Aug 2011 00:42:41 -0500
Subject: [Microscopy] AFM Deconvolution

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,

what is the current status with deconvolution of AFM images please? Your
suggestions and links on software, protocols and other resources would
be highly appreciated.

With kind regards,
Dmitry


==============================Original Headers==============================
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4, 18 -- Date: Mon, 01 Aug 2011 17:42:41 +1200
4, 18 -- From: Dmitry Sokolov {d.sokolov-at-massey.ac.nz}
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From: dcristofori-at-unive.it
Date: Mon, 1 Aug 2011 05:07:11 -0500
Subject: [Microscopy] SEM - filament heating current

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,
our SEM Jeol JSM-5600LV is experiencing some problems in the filament
heating current (thermoionic emission, W hairpin filament). At first the
current was very unstable, fluctuating between about 15 and 150 µA. Now
it has more or less stabilised, but at values definitely too high. I can
try to clean the gun components, at least, but I've never opened an SEM
gun. In particular, I wonder if there's some isolating gas like SF6 in
TEM guns.
Does anyone have advices for me?
Thanks a lot

Davide



~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Mon, 1 Aug 2011 07:26:03 -0500
Subject: [Microscopy] Re: SEM - filament heating current

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Davide,

Opening the gun is easy, and there should be full directions in the SEM manual.
Your symptoms sound like most like either the
filament has physically drifted and needs to be
(manually) recentered, or it has grown a whisker
that is approaching the Wehnelt. If you are very
careful, the whisker can be knocked off without
disturbing the filament. Just make sure the now
loose whisker is not rattling around in the
Wehnelt, then reinstall the Wehnelt and you
should be OK.
But, expect to have to replace the filament if it is a whisker.

Phil

} Dear Listers,
} our SEM Jeol JSM-5600LV is experiencing some problems in the filament
} heating current (thermoionic emission, W hairpin filament). At first the
} current was very unstable, fluctuating between about 15 and 150 µA. Now
} it has more or less stabilised, but at values definitely too high. I can
} try to clean the gun components, at least, but I've never opened an SEM
} gun. In particular, I wonder if there's some isolating gas like SF6 in
} TEM guns.
} Does anyone have advices for me?
} Thanks a lot
}
} Davide
}
}
}
} ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
} Davide Cristofori
}
} direct phone = 041.234.67.26
} e-mail = dcristofori[at]unive[dot]it
}
} Universita' Ca' Foscari Venezia
} Dipartimento di Sc. Molecolari e Nanosistemi
} Lab. di Scienza e Tecnologia dei Materiali
} Via Torino, 155b
} I-30172 Mestre (VE)
} Italy
} ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576


==============================Original Headers==============================
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From: dsherman-at-purdue.edu
Date: Mon, 1 Aug 2011 07:50:23 -0500
Subject: [Microscopy] Facility Director Position available

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi All,

I am planning to retire from my present position in December, 2011. I will
be staying local and will actively continue microscopy but from a different
direction.

This is a great position for anyone interested in a challenging,
multi-faceted job. Although the facility name is Life Science Microscopy,
the position involves working with researchers form throughout the
university. You never know what will come in the door, often from
Engineering or the more physical sciences (Chemistry, Earth and Atmospheric
Sciences, etc) as well as from the Colleges of Agriculture, Vet Medicine,
etc. Lots of variety and great administrative support.

Along with the job comes a very pleasant location with strong academic,
retail and manufacturing economy, good schools and affordable housing. We
are only 1hr from Indianapolis and 2hrs from Chicago....easy day trips to
both.

I will be at M&M so if you have any interest at all and would like to talk
to me there than please contact me...or just contact me in any case and I
can give you more information.

The formal position is not yet up but will be soon. It will be posted on
the MSA jobs listing as well as through the Purdue University HR site as
soon as it is finalized. Following is the tentative job description that is
awaiting final HR approval before posting:

Debby



Director, Life Science Microscopy Facility
Purdue University is seeking an individual with broad training in microscopy
to direct a multiuser and service core facility. The individual will be
responsible for the operation of the Life Science Microscopy Facility (LSMF)
(http://www.ag.purdue.edu/facilities/microscopy). The applicant must be
knowledgeable in theory and operation of transmission and scanning electron
microscopes, light microscopes, and all related equipment. Although both
non-biological and biological samples are routinely imaged, the individual
must have a strong background in biological sample preparation. The
individual is also responsible for routine maintenance of facilities,
budgetary decisions, and supervision of support staff in addition to working
directly with researchers on a daily basis. Teaching commitments will
include major roles in microscopy theory/laboratory courses as well as
one-on-one teaching of facility users. The individual must demonstrate a
desire to remain current with technology and assist a faculty advisory
committee in obtaining state-of-the-art equipment. Scholarly pursuit as a
co-investigator with faculty on research projects is encouraged. The
position requires an individual with strong inter-personal and multi-tasking
skills. Good communication skills (oral and written) are essential.

The mission of the LSMF is to provide a broad range of Purdue researchers
access to state-of-the-art microscopy instrumentation and to provide
service, consultation and training to assist scientists in obtaining their
research objectives. Technology in the LSMF provides capabilities for light,
transmission, and scanning electron microscopy, and computer-based image
analysis. Equipment is available for cryoSEM imaging, high pressure freezing
and freeze substitution, ultramicrotomy, critical point drying, vacuum
evaporation, sputter coating, microwave sample preparation, and other
support instrumentation. Staff in the LSMF provides expertise in a wide
range of specialized preparation techniques including immunocytochemistry
and HPF-freeze substitution. Equipment in the facility includes FEI/Philips
CM-100 and FEI/Philips CM-10 bio-twin transmission electron microscopes, FEI
NOVA nanoSEM FESEM, FEI Quanta 3D FEG Dual-beam, and JEOL JSM-840 scanning
electron microscopes.

Candidates should have an M.S. or Ph.D. degree and a minimum of 5 years
post-graduate experience in a life-science microscopy field. Experience
directing a multiuser facility is highly preferred.

Interested applicants should apply for the position on-line through the
Purdue University Human Resources website ( position requisition ID number
not yet assigned)



--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/
Hi All,






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From: dcristofori-at-unive.it
Date: Mon, 1 Aug 2011 08:07:59 -0500
Subject: [Microscopy] SEM - filament heating current: addenda

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,
Thank you for your quick replies and suggestions.
I forgot to say I checked the filament and no wiskers are present.
Indeed, the problem is present also with a couple of brand new
filaments, from different boxes (but not sure they're from different
batches). Also the filament position looks the right one, and actually
the hardware doesn't allow for such big drifts.
As for opening the gun, I mean "dismantle", because the idea was to
check for some problem on electrical contacts for the heating current
and high tension. Just an attempt, because we had a similar problem with
TEM time ago.
So, is it safe for the gun to dismantle it without knowing how the
instrument is built? May there be SF6 or any other insulating gas?
Thanks again

Davide

~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

==============================Original Headers==============================
5, 19 -- From dcristofori-at-unive.it Mon Aug 1 08:07:59 2011
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From: Jeffd-at-capstone-inc.com
Date: Mon, 1 Aug 2011 08:16:25 -0500
Subject: [Microscopy] Field Application Engineer Opening - East Coast United States

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Position Available : Field Application Engineer

Location : East Coast, USA (preferably Upstate, NY region - Albany,
East Fishkill)

Brief Description & Qualifications : Newly created role to support
increased demand on East Coast for growing and leading edge SEM/TEM
sample preparation equipment division of global semiconductor
manufacturer. Seeking a talented, practical technologist/engineer
possessing 3 years+ "best practice" industry exposure in technical
support and field engineering within advanced microscopy (TEM, SEM)
sample prep environment. This professional is going to oversee primarily
East Coast (United States) installation, qualification and acceptance of
advanced sample prep inspection systems at customer sites. More
comprehensive description available upon request. =20

BS Engineering/Physics required. Technical Masters desirable. Ability
and desire to travel 40%. Must be comfortable working independently at
customer sites.

Please reply directly to Jeff Dollar
Thank you!


==============================Original Headers==============================
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From: kenconverse-at-qualityimages.biz
Date: Mon, 1 Aug 2011 08:46:14 -0500
Subject: [Microscopy] SEM - filament heating current: addenda

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Davide,
I'm assuming the gun is of similar construction to the 5200, 5300, 5400.
There is no gas. There are pieces of red silicone rubber and a machined
nylon core. This can all be disassembled, cleaned, inspected carefully for
arc tracks and reassembled with a small amount of silicone grease on the
silicone rubber parts.

It is a smaller version of the 840/6400 gun.

I have had to get a new nylon piece machined for a 6400 that had arced
through due to mostly being operated at 40kV. I also had a 5200 with a bad
cable which I tried repairing/replacing several times but had to finally
give up and by the cable/gun assembly from JEOL. They would only sell the
complete assembly.

Before you go through all of that, is the gun vacuum good enough? Having
the emission current bounce all around could possibly be arcing in the gun
due to poor vacuum. The arcing could also have damaged components in the HT
tank. Check the bias circuit carefully.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: dcristofori-at-unive.it [mailto:dcristofori-at-unive.it]
Sent: Monday, August 01, 2011 9:10 AM
To: kenconverse-at-qualityimages.biz

Dear All,
Thank you for your quick replies and suggestions.
I forgot to say I checked the filament and no wiskers are present.
Indeed, the problem is present also with a couple of brand new
filaments, from different boxes (but not sure they're from different
batches). Also the filament position looks the right one, and actually
the hardware doesn't allow for such big drifts.
As for opening the gun, I mean "dismantle", because the idea was to
check for some problem on electrical contacts for the heating current
and high tension. Just an attempt, because we had a similar problem with
TEM time ago.
So, is it safe for the gun to dismantle it without knowing how the
instrument is built? May there be SF6 or any other insulating gas?
Thanks again

Davide

~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

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==============================Original Headers==============================
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19, 28 -- Subject: RE: [Microscopy] SEM - filament heating current: addenda
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 1 Aug 2011 19:34:52 -0500
Subject: [Microscopy] viaWWW: MM2011 Expo Issue as PDF now available

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://microscopy.com/MLFormMail.html
---------------------------------------------------------------------------
Remember this posting is most likely not from a Subscriber, so when
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Email: abjohnson-at-cambridge.org
Name: Aaron Bernard Johnson

Organization: Cambridge Journals

Title-Subject: [Filtered] M&M 2011 EXPO: single PDF to download (Apple
friendly!)

Message: Dear Microscopy Community,

I write to you as the Cambridge Journals publisher for the Microscopy &
Microanalysis 2011 EXPO. As several of you have pointed, out the
magazine page-turning view does not work on an iPad because of Adobe
Flash compatibility with Apple. However, there are now 2 options:


http://journals.cambridge.org/action/displayJournal?jid=MAM

M&M 2011 EXPO: Option 1 - Single PDF cover-to-cover view (Apple / iPad
friendly !)

M&M 2011 EXPO: Option 2 - Magazine view ( Flash technology and
challenging for Apple/iPad)


with best summer wishes and see you in Nashville!

Aaron

Senior Editor, Cambridge Journals
abjohnson-at-cambridge.org

Login Host: 65.202.160.242
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 2 Aug 2011 07:30:44 -0500
Subject: [Microscopy] viaWWW:3D tomography in SEM

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: dzhou-at-tcd.ie Name: Dan Zhou

Organization: CRANN, TCD, Ireland

Title-Subject: [Filtered] 3D tomography in SEM

Message: Hi, all.
May I know is there any free or open source software specifically
suitable for 3D tomography in SEM?

I know some very good in TEM tomography, but not sure if they suit SEM.

Thanks in advance!

Dan

Login Host: 134.226.252.160
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From: protrain-at-emcourses.com
Date: Tue, 2 Aug 2011 13:04:05 -0500
Subject: [Microscopy] SEM - filament heating current

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

First I agree with you it seems that the gun may be dirty or the vacuum
system is inadequate. The fact that the system improved would be the vacuum
improving but you still need to clean the gun area. I would still worry
about electrical connections and possibly the high voltage cable but first
thing first make sure that the gun chamber is clean.

The electron gun in an SEM is a very simple system. The cathode assembly is
fixed to a ceramic insulator and the anode screws (or simply fits inside)
the top of the first condenser lens and the gun alignment coil system.

There are a vast array of cleaning media used by laboratories to clean the
cathode assemblies of electron microscopes. With many of these the biggest
failing is the difficulty of removing completely the cleaning media leading
to excessive contamination within the system. This problem is further
complicated by the human hazards associated with some of the solvents being
used. In some countries acetone and ether are not permitted in the
laboratory.

In the best technique the cathode assembly is placed, aperture face upwards,
in a beaker of stock ammonia solution diluted 3 parts ammonia to one part
water. The stock solution may be 30 to 40% ammonia. After 15 minutes in
the ultrasonic cleaner the beaker is placed under running water and
thoroughly flushed through. Care should be taken to ensure that none of the
clamping or alignment screws had fallen out of the cathode assembly and
could be flushed away! The cathode is then washed with alcohol before being
dried with a hair drier. A new filament should be fitted and centred. The
assembly should be checked for cleanliness by observing with a 10X lens
prior to re installation in the microscope. Total time for this procedure
should be less than 25 minutes from filament break to pump down.

Great care should be taken not to allow the ammonia solution to make contact
with the skin or eyes of the operator. When flushing the solution through
with water its flow should be set so as not to splash the solution over the
operator prior to placing the beaker under the flow.

The anode should be cleaned in a similar fashion.

If the metal walls of the gun chamber are coloured they too should be
cleaned using 1 part ammonia solution with 10 parts of water. It would be
ideal to remove the gun chamber but with care it may be cleaned in situ.
Once clean it should be heated with a hair dryer to out gas. Cover the
anode area with aluminium foil during cleaning and use damped fluff free but
absorbent tissue to apply the solution.

Check all of the "O" rings that are disturbed and wash them, like washing
your hands, in hot soapy water. Clean the "O" ring seats and flat faces
with a solvent.

I hope that this helps but if you need more please come back to me.

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com

-----Original Message-----
X-from: dcristofori-at-unive.it [mailto:dcristofori-at-unive.it]
Sent: 01 August 2011 11:08
To: protrain-at-emcourses.com

Dear Listers,
our SEM Jeol JSM-5600LV is experiencing some problems in the filament
heating current (thermoionic emission, W hairpin filament). At first the
current was very unstable, fluctuating between about 15 and 150 µA. Now
it has more or less stabilised, but at values definitely too high. I can
try to clean the gun components, at least, but I've never opened an SEM
gun. In particular, I wonder if there's some isolating gas like SF6 in
TEM guns.
Does anyone have advices for me?
Thanks a lot

Davide



~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

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From: bjdewe-at-aol.com
Date: Tue, 2 Aug 2011 14:38:35 -0500
Subject: [Microscopy] Re:

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Smoking kills people.. http://honeybeejoy.com/page.php?iGIS=76s0




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From: ce-at-personifysearch.com
Date: Tue, 2 Aug 2011 15:12:36 -0500
Subject: [Microscopy] Technical Service Engineer Opportunity in Berlin Germany

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Technical Service Engineer

The Company:

Our client is a leading developer and producer of innovative high-tech
precision optics systems for the analysis of microstructures. As one of
the market leaders in each of the fields of Microscopy, Confocal Laser
Scanning Microscopy, Imaging Systems, Specimen Preparation and Medical
Equipment. Comprising nine manufacturing facilities in seven countries,
sales and service companies in 20 countries and an international network
of dealers, the company is represented in over 100 countries.

The Opportunity:

The company currently has an opening for a Technical Service Engineer
based in Berlin Germany. All applicants must not be adverse to travel, as
this is a position that may require you to travel when necessary.

Salary: Commensurate with experience

Other: Company car

Primary Responsibilities:

The Technical Service Engineer will visit customers for preventative
maintenance, repairs, fault analysis, phone support and upgrades in order
to achieve optimum customer care and ensure a professional repair in due
time with effective and efficient working practice. The Technical Service
Engineer will also deliver, promote and sell high quality technical
service within the area of responsibility with the objective of achieving
customer satisfaction while obtaining individual or team revenue and
targets.


Additional Responsibilities:
- Work closely with the Service Team to ensure all customers in territory
are provided a professional After Sales service
- Work closely with Sales Reps within the respective Segment in order to
support activities such as Installations and Demo/Exhibitions
- Exchange valuable information resulting from customer contacts to
increase customer satisfaction and sales
- Work closely with Customer Care in order to ensure smooth and fast
processes and information flow
- Deliver accurate reporting, handling and timely submission of Mobile
Service reports, Expenses, Spares Stock management and other Service
documentation


Education and Experience Required:

- Degree in Engineering; Familiarity with standard IT tools; Experienced
Technical Engineer with qualifications in IT (Connectivity and Networking)
- Ability to demonstrate understanding of basic Optical principles and
demonstrate sound Electronic and Instrumentation engineering skills
- Ability to plan own work and work unsupervised
- Fluency in German, English capable to communicate, and strong
communication skills


If you meet and/or exceed the experience criteria, please submit your
resume by emailing Christy Edwards (Sr. e-Recruitment Consultant with
Personify). We wish everyone the best of luck. Unfortunately only
qualified candidates will be considered.

==============================Original Headers==============================
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==============================End of - Headers==============================




From: ce-at-personifysearch.com
Date: Tue, 2 Aug 2011 15:19:19 -0500
Subject: [Microscopy] R&D Manager - Digital Pathology Opportunity in Germany

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

R&D Manager - Digital Pathology


The Company:

Our client is a leading developer and producer of innovative high-tech
precision optics systems for the analysis of microstructures. As one of
the market leaders in each of the fields of Microscopy, Confocal Laser
Scanning Microscopy, Imaging Systems, Specimen Preparation and Medical
Equipment. Comprising nine manufacturing facilities in seven countries,
sales and service companies in 20 countries and an international network
of dealers, the company is represented in over 100 countries.

The Opportunity:

The company currently has an opening for an R&D Manager for the business
segment, Digital Pathology. Ideal base for this position is Germany. All
applicants must not be adverse to travel, as this is a position that may
require you to travel when necessary.

Salary: Commensurate with experience

Primary Responsibilities:

The R&D Manager is responsible for all Research and Development issues
regarding Virtual Microscopes/Digital Pathology and will manage R&D teams
in Dublin, Ireland and Wetzlar, Germany (approx. 20 employees working in
development, testing, system engineering and project management).

Additional Responsibilities:
- Build Research and Development (R&D) Team; Alignment of existing teams
in Dublin, Ireland and Wetzlar Germany; Lead, develop and rate R&D staff
- Insourcing software development and testing team for Slide Scanner;
Implement system engineer
- Support in preparation and implementation of Digital Pathology strategy
and transfer/lead over into roadmap portfolio
- Definition and implementation of whole Slide Scanner strategy and
Software-application strategy (together with Production Management)
- Install medium-term capacity planning for R&D Digital Pathology and
sourcing strategy for all critical components
- Agree on portfolio and technology topics with Program Management and
Management R&D Clinical Imaging



Education and Experience Required:

- University degree in Engineering or Sciences
- Serveral years of experience in R&D (preferalbly hard- and software)
including some years in teamleader or project leader role
- Experience in Medical Device Industry (regulated environment)
- Broad knowledge of modern hard- and software development techniques
- Experience in cross-platform systems integration
- Good leadership and project managment skills
- Knowledge in optics and mechanics is preferable


If you meet and/or exceed the experience criteria, please submit your
resume by emailing Christy Edwards (Sr. e-Recruitment Consultant with
Personify) at ce-at-personifysearch.com. We wish everyone the best of luck.
Unfortunately only qualified candidates will be considered.

==============================Original Headers==============================
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==============================End of - Headers==============================




From: ce-at-personifysearch.com
Date: Tue, 2 Aug 2011 15:22:55 -0500
Subject: [Microscopy] Technical Service Engineer Opportunity in Berlin Germany

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Technical Service Engineer


The Company:

Our client is a leading developer and producer of innovative high-tech
precision optics systems for the analysis of microstructures. As one of
the market leaders in each of the fields of Microscopy, Confocal Laser
Scanning Microscopy, Imaging Systems, Specimen Preparation and Medical
Equipment. Comprising nine manufacturing facilities in seven countries,
sales and service companies in 20 countries and an international network
of dealers, the company is represented in over 100 countries.

The Opportunity:

The company currently has an opening for a Technical Service Engineer
based in Berlin Germany. All applicants must not be adverse to travel, as
this is a position that may require you to travel when necessary.

Salary: Commensurate with experience

Other: Company car

Primary Responsibilities:

The Technical Service Engineer will visit customers for preventative
maintenance, repairs, fault analysis, phone support and upgrades in order
to achieve optimum customer care and ensure a professional repair in due
time with effective and efficient working practice. The Technical Service
Engineer will also deliver, promote and sell high quality technical
service within the area of responsibility with the objective of achieving
customer satisfaction while obtaining individual or team revenue and
targets.


Additional Responsibilities:
- Work closely with the Service Team to ensure all customers in territory
are provided a professional After Sales service
- Work closely with Sales Reps within the respective Segment in order to
support activities such as Installations and Demo/Exhibitions
- Exchange valuable information resulting from customer contacts to
increase customer satisfaction and sales
- Work closely with Customer Care in order to ensure smooth and fast
processes and information flow
- Deliver accurate reporting, handling and timely submission of Mobile
Service reports, Expenses, Spares Stock management and other Service
documentation


Education and Experience Required:

- Degree in Engineering; Familiarity with standard IT tools; Experienced
Technical Engineer with qualifications in IT (Connectivity and Networking)
- Ability to demonstrate understanding of basic Optical principles and
demonstrate sound Electronic and Instrumentation engineering skills
- Ability to plan own work and work unsupervised
- Fluency in German, English capable to communicate, and strong
communication skills


If you meet and/or exceed the experience criteria, please submit your
resume by emailing Christy Edwards (Sr. e-Recruitment Consultant with
Personify) at ce-at-personifysearch.com. We wish everyone the best of luck.
Unfortunately only qualified candidates will be considered.

==============================Original Headers==============================
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From: zaluzec-at-aaem.amc.anl.gov
Date: Tue, 2 Aug 2011 19:57:59 -0500
Subject: [Microscopy] Administrivia: Spam from AOL User

Contents Retrieved from Microscopy Listserver Archives
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Colleagues...

I saw the spam posting from AOL. This subscription has
been disabled so no additional posting should be forthcoming.
Investigating it appears that the AOL Email address has been
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their accounts.

Cheers,

Nestor
Your Friendly Neighborhood SysOp

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From: nizets2-at-yahoo.com
Date: Wed, 3 Aug 2011 04:18:00 -0500
Subject: [Microscopy] RE: viaWWW:Biosample in TEM 80 KV and 200 KV

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Just one additional thought: did you insert the objective aperture?
Perhaps on the 200kV (EDX?) you mainly work with the aperture out. It needs to
be inserted otherwise there is a big chance that you blow up your section.

Regards
Stephane



----- Original Message ----
X-from: "Marcela.Redigolo-at-mail.wvu.edu" {Marcela.Redigolo-at-mail.wvu.edu}
To: nizets2-at-yahoo.com
Sent: Thu, July 28, 2011 3:14:46 PM

Dear all:


Thanks for all the replies and many suggestions.
We indeed never worked with the scope at 80KV and you are correct, Elaine.
The alignment is way off. Still, I'll keep this idea in mind. It will be very
helpful to have the scope

operating on both accelerating voltages. But before doing this, I'll try many
other ideas that
were suggested for this biosample in particular.


Thanks again to all for your replies. I really appreciate!


Kindest regards,


Marcela.




} } }   07/28/11 9:01 AM } } }



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Hello Steve and Fellow Listers,

Just to add what may be an obvious note about operating at a lower accelerating
voltage.  If the 2100 has never been aligned at anything other than 200kV, you
may need to have a service engineer in to do initial alignments at lower
voltages.  When our JEOL JEM-3010 was installed, the engineers did alignments at
50kV intervals from 50 to 300kV and stored those values for future use.  On the
rare occasions when I use a lower accelerating voltage, I just have to do some
minor touch-up to the alignment.  Also, you'll want to check your magnification
calibration at the lower accelerating voltage. 


Regards,

Elaine

********************************************************************* 
Elaine F.Schumacher
Senior Research Scientist
McCrone Associates, Inc.
850 Pasquinelli Drive
Westmont, IL  60559-5539 USA
630-887-7100 (tel)
630-887-7417 (fax)
E-mail:      eschumacher-at-mccrone.com
Web Site:  www.mccrone.com



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-----Original Message-----
X-from: protrain-at-emcourses.com [mailto:protrain-at-emcourses.com]
Sent: Thursday, July 28, 2011 3:35 AM
To: Elaine F. Schumacher

Dear Marcela

Your 200kV microscope will work very well down at 80kV and when you return
to 200kV it will regain its absolute stability quite quickly.

I had a similar incident with a client who also worried about changing from
their 200kV JEOL.  I had the client take test pictures of the gold lattice
from 200kV down to 80kV in 20kV steps; she was 100% successful!

Enjoy

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512  Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com


-----Original Message-----


Email: marcela.redigolo-at-mail.wvu.edu Name: Marcela Redigolo

Organization: WVU SRF

Title-Subject: [Filtered] Biosample in TEM 80 KV and 200 KV

Message: Dear all:

We have one user that prepares his biological tissues in resin and then
cut them for TEM studies. He has been using a 80KV TEM for that, but
that TEM does't have digital camera and he wants to start using ours.

We have a JEOL 2100 TEM operating at 200KV. We can run the sample and do
some imaging while playing a bit with the settings of the scope, but
still in some cases the sample ends up burning. I'm not experienced with
biological samples.

Is there a different sample preparation he should look for, or maybe
change his resin or do cryo-cut, before coming to our scope, or is there
a certain group of settings I should work with for this particular case?
Thanks for any help.

Marcela.


  Login Host: 157.182.80.244
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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Wed, 3 Aug 2011 06:44:19 -0500
Subject: [Microscopy] tomo and SEM

Contents Retrieved from Microscopy Listserver Archives
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there was a posting on 'tomo and SEM' on the listserver and I accidentally hit the delete button. Anyway: I know that Paul Walther in Ulm , Germany , did something in this direction, and showed it on a conference. You may contact him directly. - As far as I remember, he collected the data straight forward by tilting the specimen in the SEM (is every SEM able to do this ...? eucentric height??) and processed the data straight away in IMOD (Boulder; David Mastronarde and co!). -- Paul is the person to ask.
kind regards - Reinhard

--
Prof. Dr. Reinhard Rachel
Universitaet Regensburg
Centre for EM / Anatomy
Faculty for Biology&Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29



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From: sekkio-at-mac.com
Date: Wed, 3 Aug 2011 07:26:36 -0500
Subject: [Microscopy] alby

Contents Retrieved from Microscopy Listserver Archives
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Ciao everybody,
please have a look at http://www.microscopy-analysis.com/magazine-issue/volume-25-issue-5-july-2011.
All the best
Alby


Please, put on your agenda 4-6 July 2012, Optics Within Life Sciences in Genoa.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 3 Aug 2011 08:27:20 -0500
Subject: [Microscopy] viaWWW:Cathodoluminescence Topical Conference 2011

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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: scott.wight-at-nist.gov Name: Scott Wight

Organization: NIST

Title-Subject: [Filtered] Cathodoluminescence Topical Conference 2011

Message: Abstracts are now being accepted for the Cathodoluminescence
Topical Conference to be held at NIST in Gaithersburg, MD, USA on
October 24-28, 2011. Please see the conference website for details:
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From: dcristofori-at-unive.it
Date: Wed, 3 Aug 2011 08:40:31 -0500
Subject: [Microscopy] RE: SEM - filament heating current

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,
thank you so much for your support! You gave me very useful and detailed
information!
I'd like to follow your advice to monitor the vacuum in the gun, but
actually I don't know how to do it: there's no gauge reading in the
software, so the gauge output is just a voltage signal which I'm not
sure to be able to measure and to convert in pressure. And no aperture
for an external vacuum gauge in the gun.
Maybe all of this is getting too technical and not interesting for other
Listers. If you feel this is the case, please let me know. If in
trouble, I'll contact privately some of you.
Thanks again


Davide

~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

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From: mraderma-at-uvm.edu
Date: Wed, 3 Aug 2011 17:10:18 -0500
Subject: [Microscopy] Instructor Change, Sunday short course X14

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,

There has been a change in instructors for the Sunday short course
X14: 3D Electron Microscopy of Macromolecular Assemblies. We are glad
to announce that the section on docking of X-ray structures will now
be taught by Dr. Edward Morris from the Structural Biology group at
the Institute of Cancer Research in London, UK.

Course description (on-site registration is possible):

X14: 3D Electron Microscopy of Macromolecular Assemblies
Teresa Ruiz, Michael Radermacher, and Edward Morris

This short course will provide a comprehensive description of the
methods used for 3D structure determination of macromolecular
complexes from electron micrographs. First specimen preparation
techniques for single particles (deep stain, vitreous ice), will be
presented and the selection of imaging conditions including low-dose
imaging. This will be followed by a detailed explanation of image
processing techniques with special emphasis on the random conical
reconstruction technique. In the last part structure interpretation
and docking of X-ray structures to 3D EM densities will be demonstrated.
The techniques described have application in both biological and
materials science.


--
Michael Radermacher, Ph.D., Prof.
University of Vermont
Dept. Molecular Physiology and Biophysics
HSRF 120 / 149 Beaumont Ave
Burlington, VT 05405
USA





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From: bozzola-at-siu.edu
Date: Wed, 3 Aug 2011 17:46:42 -0500
Subject: [Microscopy] LM: pricing quotes

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A researcher at our institution is writing a grant proposal and would
like to include two light microscopes in the proposal:
(1) an inverted, phase microscope with objectives of 5, 10, 20 and
40X, (2) a stereomicroscope with bottom lighting and a magnification
range of 5 to 40X.

She mostly would be looking at large cells (swimming algae) and trying
to "pick" individual cells using a fine glass pipette. We have been
doing this on my Olympus SZH10 but she now wants her own system. Price
would be a consideration; therefore, a "price range" would be the best
approach.

Thank you.

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: mary.raven-at-lifesci.ucsb.edu
Date: Wed, 3 Aug 2011 18:05:53 -0500
Subject: [Microscopy] LM - Registration NOW Open for Jan 2012 Advanced Microscopy and

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Dear All,
Registration is Now Open for the 2012 Advanced Microscopy and Digital
Imaging Workshop at UC, Santa Barbara.
January 17-20, 2012
Offered by the Neuroscience Research Institute (NRI) and Department of
Molecular, Cellular, and Developmental Biology (MCDB).

For more details please see
https://www.lifesci.ucsb.edu/mcdb/events/imaging_workshop/

Best Regards
Mary

--
Mary Raven
Microscopy Facility Director
Neuroscience Research Institute&
Molecular, Cellular& Developmental Biology
Biology 2 Building, room 5173
The University of California
Santa Barbara, CA 93106-5060

https://ucsb-microscopy.ucsd.edu/schedule/
http://www.lifesci.ucsb.edu/mcdb/research/facilities/microscopy/microscopy.html
Phone: (805) 893 8702
Fax: (805) 893 2005



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7, 19 -- Digital Imaging Workshop
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From: jheintz-at-wisc.edu
Date: Thu, 4 Aug 2011 08:21:46 -0500
Subject: [Microscopy] Sputter Coater( Conductavac IV ) Issue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello All,
 I am attempting to remedy an issue with a Conductavac IV sputter coater by
See Vac. Recently, it was observed that the ammeter needle was wavering
considerably during the sputter coating process. The needle would be at 0 mA
and with a slight twist of the Current Adjust Knob the needle would be up
near 40mA(~ half way up ammeter).  I assumed there might be a short
somewhere in the system and after checking all the connections and making
sure all junctions were snug no obvious problems were observed.
 Another sputter coating run was attempted but to no avail. However, the
needle now moves with more fluidity. Control of the needle has been regained
though the needle currently maxes out(100mA) where the needle would
typically be at 30mA(proper amps for general sputter coating). Why the rapid
increase in amps? I have also clean the anode and cathode hoping the
removing any debris would help solve my issue. The vacuum pumping out the
system is working fine and easily pumps below 100mTorr.
 SeeVac appears to have gone under or been bought since making the
Conductavac IV(~25 years of age) so trying to find a troubleshooting source
has been difficult. Any suggestions, whether is specially pertains to the
Conductavac IV or any sputter coater, on my amp problem will be greatly
appreciated. Thank you for your time.

-Joe

--
Joseph Heintz
Lab/BBPIC Manager
University of Wisconsin-Madison
Room 1048, Animal Sciences Building
1675 Observatory Dr.
Madison, WI 53706
608.263.4162


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From: oshel1pe-at-cmich.edu
Date: Thu, 4 Aug 2011 09:31:21 -0500
Subject: [Microscopy] Re: Sputter Coater( Conductavac IV ) Issue

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Joe,

Check for break-down of the high-temperature epoxy around the
electrical feed-through at the top. I had that problem in the past.

Phil

} Hello All,
} I am attempting to remedy an issue with a Conductavac IV sputter coater by
} See Vac. Recently, it was observed that the ammeter needle was wavering
} considerably during the sputter coating process. The needle would be at 0 mA
} and with a slight twist of the Current Adjust Knob the needle would be up
} near 40mA(~ half way up ammeter). I assumed there might be a short
} somewhere in the system and after checking all the connections and making
} sure all junctions were snug no obvious problems were observed.
} Another sputter coating run was attempted but to no avail. However, the
} needle now moves with more fluidity. Control of the needle has been regained
} though the needle currently maxes out(100mA) where the needle would
} typically be at 30mA(proper amps for general sputter coating). Why the rapid
} increase in amps? I have also clean the anode and cathode hoping the
} removing any debris would help solve my issue. The vacuum pumping out the
} system is working fine and easily pumps below 100mTorr.
} SeeVac appears to have gone under or been bought since making the
} Conductavac IV(~25 years of age) so trying to find a troubleshooting source
} has been difficult. Any suggestions, whether is specially pertains to the
} Conductavac IV or any sputter coater, on my amp problem will be greatly
} appreciated. Thank you for your time.
}
} -Joe
}
} --
} Joseph Heintz
} Lab/BBPIC Manager
} University of Wisconsin-Madison
} Room 1048, Animal Sciences Building
} 1675 Observatory Dr.
} Madison, WI 53706
} 608.263.4162

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: richard.ross-at-allisontransmission.com
Date: Thu, 4 Aug 2011 09:50:37 -0500
Subject: [Microscopy] Sputter Coater( Conductavac IV ) Issue

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Joe,

My start at troubleshooting would be to determine 1) if the ammeter is at fault or 2) if the current being measured is really fluctuating as the meter seems to indicate. Background: Ammeters are typically voltmeters that measure the voltage drop across a shunt resistor. Then, using Ohms law, the current measured = I = V/R, where V is the voltage drop measured and R is the value of the shunt resistance. The shunt resistor may be external to the meter, inside the meter case, or for very low currents the resistance of the meter coil itself will suffice (there would be no shunt resistor - external or internal -in this instance). Suggested troubleshooting: After rechecking and cleaning any connections to a possible external shunt resistor, I would substitute a good digital volt-ohm-meter (a typical Fluke 112, etc.) for the suspect ammeter, set to read amperage, and see if the fluctuations reproduce. With the results of this test, you should then know whether the meter needs replacing or you need to keep looking elsewhere.

Hope this helps, Rick

Richard A. Ross
Sr. Engineer
Materials Engineering
Allison Transmission, Inc.
PO Box 894, Mail M-13
Indianapolis, IN 46206
317-242-4880

-----Original Message-----
X-from: jheintz-at-wisc.edu [mailto:jheintz-at-wisc.edu]
Sent: Thursday, August 04, 2011 9:38 AM
To: Richard A. Ross

Hello All,
 I am attempting to remedy an issue with a Conductavac IV sputter coater by See Vac. Recently, it was observed that the ammeter needle was wavering considerably during the sputter coating process. The needle would be at 0 mA and with a slight twist of the Current Adjust Knob the needle would be up near 40mA(~ half way up ammeter).  I assumed there might be a short somewhere in the system and after checking all the connections and making sure all junctions were snug no obvious problems were observed.
 Another sputter coating run was attempted but to no avail. However, the needle now moves with more fluidity. Control of the needle has been regained though the needle currently maxes out(100mA) where the needle would typically be at 30mA(proper amps for general sputter coating). Why the rapid increase in amps? I have also clean the anode and cathode hoping the removing any debris would help solve my issue. The vacuum pumping out the system is working fine and easily pumps below 100mTorr.
 SeeVac appears to have gone under or been bought since making the Conductavac IV(~25 years of age) so trying to find a troubleshooting source has been difficult. Any suggestions, whether is specially pertains to the Conductavac IV or any sputter coater, on my amp problem will be greatly appreciated. Thank you for your time.

-Joe

--
Joseph Heintz
Lab/BBPIC Manager
University of Wisconsin-Madison
Room 1048, Animal Sciences Building
1675 Observatory Dr.
Madison, WI 53706
608.263.4162


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From: tbargar-at-unmc.edu
Date: Thu, 4 Aug 2011 11:00:47 -0500
Subject: [Microscopy] Looking for advice about a immuno-gold project

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I have a researcher with a project where the antigen they want to label is
naturally present in the control and should be present in a greater amount
in the experimental cell culture. Right now the amount of label looks to
be similar in both. I'm looking for help on how to proceed to
differentiate these two conditions better. If anyone is interested in
helping please contact me privately. Thanks.


Tom Bargar
University of Nebraska Medical Center
Core Electron Microscopy Research Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 4 Aug 2011 16:13:32 -0500
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: Looking for Desktop Microscopist

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From: microscopylistserver-noreply-at-microscopy.com
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Subject: [Microscopy] viaWWW: Support in a successful service lab

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Title-Subject: [Filtered] a successful service lab

Message: How many full time electron microscoptist do you think it would
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1. Processing: 140 TEM samples
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From: beth-at-plantbio.uga.edu
Date: Thu, 4 Aug 2011 16:18:30 -0500
Subject: [Microscopy] JEOL 100SX TEM - free to a good home

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Harvey Hoch is retiring from Cornell and he wants to find a home for
his JEOL 100SX TEM. He loves this 20 year old scope and he says it is
working fine. He has permission to give it away. The party receiving
the scope would be responsible for the expense of having it
disassembled and moved. If interested please contact Harvey at hch1-at-cornell.edu
as soon as possible.

my best,
Beth (I'm just the messenger)


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 4 Aug 2011 16:22:49 -0500
Subject: [Microscopy] viaWWW: MC 2011 Meeting Aug 28-Sept 2

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Email: Wolfgang Jäger {wj-at-tf.uni-kiel.de}

Organization: Christian-Albrechts-University of Kiel

Microscopy Conference MC 2011
August 28 - September 2, 2011, Kiel / Germany
http://www.mc2011.de

Scientists and manufacturers meet at the Bay of Kiel for 6 days, from
August 28th to September 2nd, 2011, in order to discuss and exchange the
latest developments in Instrumentation and Methods and current topics in
Materials Science and Life Science during the International Microscopy
Conference 2011.

The venue of the congress is the campus of the
Christian-Albrechts-University of Kiel, for the first time. The congress
is jointly organized by the DGE German Society for Electron Microscopy in
collaboration with the European Microscopy Society (EMS), the Nordic
Microscopy Society (SCANDEM), the Polish Microscopy Society (PTMi), and
with scientists from research institutions in Estonia, Latvia,
Lithuania, and St. Petersburg, Russia.

The congress was initiated by Professor Wolfgang Jaeger of the Faculty
of Engineering of the Kiel University and will bring together
internationally distinguished scientists with experts from industry.
Currently 700 participants from all over the world and 49 companies are
expected to meet in Kiel from August 28 until September 2, 2011. The
scientific program of the congress, designed by an international panel
of distinguished scientists, focuses on electron microscopy and related
methods and comprises more than 25 symposia and workshops. The program
is complemented by plenary talks of leading scientists on current
developments of Instrumentation and Methods and on current topics in
Materials Science and in Life Science.

The conference is actively supported by the Helmholtz Zentrum Geesthacht
(HZG) Centre for Materials and Coastal Research and by the
Fraunhofer-Institute for Silicon Technology (ISIT) Itzehoe.

In addition, the conference will provide a forum for the information
exchange between scientists and manufacturers, as it will host a major
trade exhibition, bringing together manufacturers of microscopes and
suppliers of equipment and products in all fields of microscopy and
related techniques.


Wolfgang Jaeger Professor, Dr.
Mikrostrukturanalytik, Institut für Materialwissenschaft Microanalysis
of Materials, Institute for Materials Science
Christian-Albrechts-Universitaet zu Kiel
Kaiserstrasse 2 24143 Kiel Germany EU
T +49 431 880 6177
F -6178
wj-at-tf.uni-kiel.de
Chairman MC2011 Microscopy Conference Kiel Germany
www.mc2011.de



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From: colijn.1-at-osu.edu
Date: Thu, 4 Aug 2011 18:52:29 -0500
Subject: [Microscopy] Re: [Filtered] MicroscopyListserverviaWWW: Looking for

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Mark,

At the moment, Desktop Microscopist is essentially defunct. The person
who was doing the development has pretty much dropped the project.

A few weeks back, Matt Olszta (matthew.olszta-at-pnnl.gov) posted a message
to the listserver asking about interest in reviving Desktop
Microscopist. He might be a good contact to see if anyone else is
interested.

Cheers,
Henk

At 8/4/2011 5:14 PM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Email: wall1-at-LLNL.gov Name: Mark A. Wall
}
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} Title-Subject: [Filtered] Desktop Microscopist
}
} Message: Can anyone tell me if it is still possible to purchase a copy
} of Desktop Microscopist? If so, from who? My Web searches keep hitting
} roadblocks.
} thanks,
}
} Mark A. Wall
} LLNL
}
} Login Host: 128.115.27.11
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}
} ==============================Original Headers==============================
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}

--
Hendrik O. Colijn
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

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From: contact-at-integrityscientific.com
Date: Fri, 5 Aug 2011 03:19:46 -0500
Subject: [Microscopy] TEM plasma cleaner

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

We need to get a TEM plasma cleaner in our lab, but we have some
restrictions on our budget. The plasma cleaner should be suitable for
TEM holders, and both soft and hard materials. We are thinking about a
FEMTO UHP Plasma Treatment System (from Diener electronic) or the SPI
Plasma Prep Plasma Cleaner. Does anyone have those plasma cleaners in
ther lab? If yes, could you provide some feedback?

Best Regards,

Ana

==============================Original Headers==============================
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From: sekkio-at-mac.com
Date: Fri, 5 Aug 2011 07:29:01 -0500
Subject: [Microscopy] alby about owls2012

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear
please consider that the OWLS 2012 website is open even if under "work in progress". Please, put on the agenda the dates. If you are interested un bursaries please let me know via email using as subject "OWLS12 support", deadline is "asap".
All the best
Alby

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From: sekkio-at-mac.com
Date: Fri, 5 Aug 2011 08:05:53 -0500
Subject: [Microscopy] website

Contents Retrieved from Microscopy Listserver Archives
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Sorry here is the link: http://www.owls2012.org/
Alby

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From: spurgeon-at-drexel.edu
Date: Fri, 5 Aug 2011 11:10:28 -0500
Subject: [Microscopy] Fitting x-ray reflectivity data

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi listers,

I know that this isn't exactly microscopy-related but I have a
question about fitting x-ray reflectivity data.

All of the programs I've used for fitting thin film x-ray reflectivity
(GenX, SimulReflec, ReflPak) require three columns of data: q,
reflectivity, and counting error dR. I've been measuring some samples
on a Rigaku SmartLab system and it only outputs two columns: q and
counts. I know how to normalize the counts to the critical edge to get
reflectivity, but how do I extract the error dR? Is it something that
the x-ray system has to record during a scan?

I have a feeling it's something simple that I slept through in my
statistics class but any help would be greatly appreciated. Thanks!

--
Steven Spurgeon
Dynamic Characterization Group
Department of Materials Science & Engineering
Drexel University

Office: Bossone 105
Email: spurgeon-at-drexel.edu
Web: http://www.materials.drexel.edu/dcg/

==============================Original Headers==============================
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From: jsb43-at-cam.ac.uk
Date: Fri, 5 Aug 2011 12:35:53 -0500
Subject: [Microscopy] Re: Fitting x-ray reflectivity data

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Dear Steven,

If the count rate is genuinely the number of photons detected (N), then the
count rate is Poisson distributed, i.e. the standard deviation = sqrt(N) to
a very good approximation. The approximation gets better the higher the
count rate is; I would use this approximation only if N} 10 counts/channel.

Yours, Jon


} Hi listers,
}
} I know that this isn't exactly microscopy-related but I have a
} question about fitting x-ray reflectivity data.
}
} All of the programs I've used for fitting thin film x-ray reflectivity
} (GenX, SimulReflec, ReflPak) require three columns of data: q,
} reflectivity, and counting error dR. I've been measuring some samples
} on a Rigaku SmartLab system and it only outputs two columns: q and
} counts. I know how to normalize the counts to the critical edge to get
} reflectivity, but how do I extract the error dR? Is it something that
} the x-ray system has to record during a scan?
}
} I have a feeling it's something simple that I slept through in my
} statistics class but any help would be greatly appreciated. Thanks!
}
} --
} Steven Spurgeon
} Dynamic Characterization Group
} Department of Materials Science & Engineering
} Drexel University
}
} Office: Bossone 105
} Email: spurgeon-at-drexel.edu
} Web: http://www.materials.drexel.edu/dcg/
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 6 Aug 2011 00:14:09 -0500
Subject: [Microscopy] viaWWW:Room Design

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Email: DougM-at-gmaol.com Name: Doug

Organization: IEFAS Inc

Title-Subject: [Filtered] Room Design

Message: Hello,

We're in the process of building a SEM room and were asked what color do
we want our walls to be. I figured this would be a good place to get
some opinions. Is there an ideal color for a SEM room? Does one color
lend itself to better imaging then another?
Thanks all!

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From: stefan.diller-at-t-online.de
Date: Sun, 7 Aug 2011 12:47:36 -0500
Subject: [Microscopy] Re: viaWWW:Room Design

Contents Retrieved from Microscopy Listserver Archives
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Hi Doug,
if you do coloured SEM work like me :-) I would propose an "Ansel Adams" neutral grey. Images on the wall will look perfect that way.
I would add some spotlights also, if you will be the proud owner of a new scope.
:-))

Best wishes,
Stefan


-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 06.08.11 07:20, schrieb microscopylistserver-noreply-at-microscopy.com:
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}
} Email: DougM-at-gmaol.com Name: Doug
}
} Organization: IEFAS Inc
}
} Title-Subject: [Filtered] Room Design
}
} Message: Hello,
}
} We're in the process of building a SEM room and were asked what color do
} we want our walls to be. I figured this would be a good place to get
} some opinions. Is there an ideal color for a SEM room? Does one color
} lend itself to better imaging then another?
} Thanks all!
}
} Login Host: 152.135.235.188
} ---------------------------------------------------------------------------
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}
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 8 Aug 2011 18:26:34 -0500
Subject: [Microscopy] viaWWW:Diamond Knife (Drukker) supplier

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Email: z.zhou-at-lboro.ac.uk Name: Z Zhou

Organization: Loughborough University UK

Title-Subject: [Filtered] Diamond Knife (Drukker) supplier

Message: Looking for supplier(s) in the UK or Europe of the diamond
knife “Drukker international”. The one I inherited was from EMITECH LTD,
but was told no longer supply them. The knife is mainly for room
temperature TEM sectioning polymer composites. Type: Ultra with trough
2mm-45°.
Agar supplies “Diatome”. Attempted to try one of equivalent functions.
How do you compare these two knives?

Zhou


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From: ce-at-personifysearch.com
Date: Tue, 9 Aug 2011 09:10:25 -0500
Subject: [Microscopy] Product Specialist Opportunity with a Market Leader in Microscopy

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Product Specialist - Microscopy

The Company:
Our client is a leading developer and producer of innovative high-tech
precision optics systems for the analysis of microstructures.  As one of
the market leaders in each of the fields of Microscopy, Confocal Laser
Scanning Microscopy, Imaging Systems, Specimen Preparation and Medical
Equipment.  Comprising nine manufacturing facilities in seven countries,
sales and service companies in 20 countries and an international network
of dealers, the company is represented in over 100 countries.

The Opportunity:
The company currently has an opening for a Product Specialist - Microscopy
to be based in Chicago IL or Philadelphia PA.  Relocation may be
considered for this opportunity.

Base: Commensurate with experience
Other: Full benefits - 401k program/matching

Primary Responsibilities:
This position requires interfacing with customers and sales/applications
specialist to deeply understand and provide extensive application support
on issues related to Widefield and Advanced Fluorescence Microscopy.
Significant time will be spent working with customers to identify optimal
solutions to their needs and troubleshoot application, hardware and
software problems.  In addition, candidate will support trade shows and
training courses, including planning, communicating, attending and
reporting.  Handling demonstration system logistics and confirming correct
system functionality is also required.

Education and Experience Required:
- Minimum BA/BS in Biological Sciences or Engineering; Advanced degree
preferred
- Business aptitude required
- Familiarity with biological imaging applications needed
- Fluorescence microscopy experience highly valued
- Good written and verbal communication skills are necessary

If you meet and/or exceed the experience criteria, please submit your
resume by emailing Christy Edwards (Sr. e-Recruitment Consultant with
Personify) at ce-at-personifysearch.com. We wish everyone the best of luck.
Unfortunately only qualified candidates will be considered.


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From: zhouhw33-at-gmail.com
Date: Tue, 9 Aug 2011 13:44:46 -0500
Subject: [Microscopy] Artifacts of the scintillator on a Gatan camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

We have a Gatan camera showing some unusall features on the gain
reference images (those "honeycomb" images). These features, according
to Gatan, are perhaps "physical artifacts" on the phosphor coating.
They also claim that the scintillator cannot be made defect-free. As
long as those artifacts do not affect image quality, there is no need
to replace the scintillator - as the new one may have its own problem.

Has anyone met a similar problem? What would be the long-term effects
of the physical artifacts (of the phosphor coating) on the performance
of the camera? Right now, these artifacts can be corrected by software
method (gain reference corrected). However, will they lead to dead
pixels eventually?

I should mention that these artifacts are not oil contaminants. We
baked the camera several times and they are still there. They are not
hardened oil contaminants either. A service engineer from Gatan had
cleaned the surface with ethanol. But those features remain on the
uncorrected images. Their latest explanation is they might be the
"physical artifacts on the phosphor coating".

Any input is welcome. Also, if you would like to see how those
artifacts look like, please send me an email.

Kind regards,

Hongwen Zhou


Temple University
1901 N 13th Street
Philadelphia, PA 19122
Tel: (215) 204-0366

==============================Original Headers==============================
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9, 23 -- Message-ID: {CAODik+tDFdxyw-s4APK+Qxao27jhMUuDabOV=oGd0UTvKhL01A-at-mail.gmail.com}
9, 23 -- Subject: Artifacts of the scintillator on a Gatan camera
9, 23 -- From: Hongwen Zhou {zhouhw33-at-gmail.com}
9, 23 -- To: Microscopy-at-microscopy.com
9, 23 -- Content-Type: text/plain; charset=ISO-8859-1
==============================End of - Headers==============================




From: zhouhw33-at-gmail.com
Date: Tue, 9 Aug 2011 15:01:43 -0500
Subject: [Microscopy] Re: Artifacts of the scintillator on a Gatan camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

It seems that my words had caused some confusion. To clarify: when I
say "artifacts", I did not refer to the honeycomb pattern. The
artifacts are superimposed on the honeycomb pattern.



On Tue, Aug 9, 2011 at 2:44 PM, Hongwen Zhou {zhouhw33-at-gmail.com} wrote:
} Dear Listers,
}
} We have a Gatan camera showing some unusall features on the gain
} reference images (those "honeycomb" images). These features, according
} to Gatan, are perhaps "physical artifacts" on the phosphor coating.
} They also claim that the scintillator cannot be made defect-free. As
} long as those artifacts do not affect image quality, there is no need
} to replace the scintillator - as the new one may have its own problem.
}
} Has anyone met a similar problem? What would be the long-term effects
} of the physical artifacts (of the phosphor coating) on the performance
} of the camera? Right now, these artifacts can be corrected by software
} method (gain reference corrected). However, will they lead to dead
} pixels eventually?
}
} I should mention that these artifacts are not oil contaminants. We
} baked the camera several times and they are still there. They are not
} hardened oil contaminants either. A service engineer from Gatan had
} cleaned the surface with ethanol. But those features remain on the
} uncorrected images. Their latest explanation is they might be the
} "physical artifacts on the phosphor coating".
}
} Any input is welcome. Also, if you would like to see how those
} artifacts look like, please send me an email.
}
} Kind regards,
}
} Hongwen Zhou
}
}
} Temple University
} 1901 N 13th Street
} Philadelphia, PA 19122
} Tel: (215) 204-0366
}

==============================Original Headers==============================
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4, 26 -- Date: Tue, 9 Aug 2011 16:01:42 -0400
4, 26 -- Message-ID: {CAODik+v-bVBfHSKtXzO=dVs9X8WTsmhc80O3PwsADgzpOmhr7A-at-mail.gmail.com}
4, 26 -- Subject: Re: Artifacts of the scintillator on a Gatan camera
4, 26 -- From: Hongwen Zhou {zhouhw33-at-gmail.com}
4, 26 -- To: Microscopy-at-microscopy.com
4, 26 -- Content-Type: text/plain; charset=ISO-8859-1
==============================End of - Headers==============================




From: tobias.starborg-at-manchester.ac.uk
Date: Wed, 10 Aug 2011 03:32:35 -0500
Subject: [Microscopy] Re: Artifacts of the scintillator on a Gatan camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Zhou,

It is difficult to picture what you mean by "artefacts" without an image. Would it be possible for you to host the image on a website and put a link here, so that we can see what you are talking about? I have to admit that I was also one of the people thinking that you were worried by the honeycomb effect of the fibre optics.

TobyS


Dr Tobias Starborg
Senior Experimental Officer: 3DEM
Michael Smith Building
Oxford Road
Manchester
M13 9PT
Tel: +44(0)1612755170
http://manchesterpolara.org.uk

________________________________________
X-from: zhouhw33-at-gmail.com [zhouhw33-at-gmail.com]
Sent: 09 August 2011 21:08
To: Tobias Starborg

It seems that my words had caused some confusion. To clarify: when I
say "artifacts", I did not refer to the honeycomb pattern. The
artifacts are superimposed on the honeycomb pattern.



On Tue, Aug 9, 2011 at 2:44 PM, Hongwen Zhou {zhouhw33-at-gmail.com} wrote:
} Dear Listers,
}
} We have a Gatan camera showing some unusall features on the gain
} reference images (those "honeycomb" images). These features, according
} to Gatan, are perhaps "physical artifacts" on the phosphor coating.
} They also claim that the scintillator cannot be made defect-free. As
} long as those artifacts do not affect image quality, there is no need
} to replace the scintillator - as the new one may have its own problem.
}
} Has anyone met a similar problem? What would be the long-term effects
} of the physical artifacts (of the phosphor coating) on the performance
} of the camera? Right now, these artifacts can be corrected by software
} method (gain reference corrected). However, will they lead to dead
} pixels eventually?
}
} I should mention that these artifacts are not oil contaminants. We
} baked the camera several times and they are still there. They are not
} hardened oil contaminants either. A service engineer from Gatan had
} cleaned the surface with ethanol. But those features remain on the
} uncorrected images. Their latest explanation is they might be the
} "physical artifacts on the phosphor coating".
}
} Any input is welcome. Also, if you would like to see how those
} artifacts look like, please send me an email.
}
} Kind regards,
}
} Hongwen Zhou
}
}
} Temple University
} 1901 N 13th Street
} Philadelphia, PA 19122
} Tel: (215) 204-0366
}

==============================Original Headers==============================
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4, 26 -- Subject: Re: Artifacts of the scintillator on a Gatan camera
4, 26 -- From: Hongwen Zhou {zhouhw33-at-gmail.com}
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4, 26 -- Content-Type: text/plain; charset=ISO-8859-1
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==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 10 Aug 2011 07:26:58 -0500
Subject: [Microscopy] viaWWW:EDX on nanoporous material

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Email: adrian.vega-at-utoronto,ca Name: Adrian Vega

Organization: Chemical Engineering - University of Toronto

Title-Subject: [Filtered] EDX on nanoporous material

Message: Good afternnon

I am doing some SEM/EDX analysis on nanoporous alloys containing
Ag-Au-Pt with a pore size between 3-15nm. This nanoporous alloy is on
top of an alloy with the same elements. The average thickness of this
nanoporous layer is around 8um. Typically, I prepare metallographic
specimens to either determine the thickness of my nanoporous alloys or
to analyze its composition by doing EDX on a cross section of the
sample. However, I found that because the Pt concentration is very low
(~1at.%) I have to use accelerating voltages higher than 20kV (I have
tried lower accelerating voltages obtaining very weir EDX results). I
have two main concerns. One is about the effect of porosity in my
results because I know that this type of analysis assumes 100% density
whether you are using standardless routines or with standards. My second
concern, which is related to the first one, is if there is any real
concern of having an interference of the substrate in my EDX reading,
mainly due to high interaction volume and high porosity. Therefore, I
was wondering of there is any correction or consideration to take into
account to do this kind of analysis.

Thanks in advance for any help

Best regards

Adrian Vega
Login Host: 128.100.199.138
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From: zhouhw33-at-gmail.com
Date: Wed, 10 Aug 2011 07:30:31 -0500
Subject: [Microscopy] Re: Artifacts of the scintillator on a Gatan camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Toby,

Thanks for your suggestion. Please find the image in the attached link,

https://picasaweb.google.com/lh/photo/uCjBAq60wL8N8AbSCp4Nnw?feat=directlink

There are three artifacts on that image, one near the upper left
corner, one at the lower left corner, and one near the lower right
corner, respectively.

Regards,

Hongwen Zhou



On Wed, Aug 10, 2011 at 4:43 AM, {tobias.starborg-at-manchester.ac.uk} wrote:
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
} To  Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
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} ----------------------------------------------------------------------------
}
} Dear Zhou,
}
}      It is difficult to picture what you mean by "artefacts" without an image.  Would it be possible for you to host the image on a website and put a link here, so that we can see what you are talking about?  I have to admit that I was also one of the people thinking that you were worried by the honeycomb effect of the fibre optics.
}
} TobyS
}
}
} Dr Tobias Starborg
} Senior Experimental Officer: 3DEM
} Michael Smith Building
} Oxford Road
} Manchester
} M13 9PT
} Tel: +44(0)1612755170
} http://manchesterpolara.org.uk
}
} ________________________________________
} X-from: zhouhw33-at-gmail.com [zhouhw33-at-gmail.com]
} Sent: 09 August 2011 21:08
} To: Tobias Starborg
} Subject: [Microscopy] Re: Artifacts of the scintillator on a Gatan camera
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
} To  Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} It seems that my words had caused some confusion. To clarify: when I
} say "artifacts", I did not refer to the honeycomb pattern. The
} artifacts are superimposed on the honeycomb pattern.
}
}
}
} On Tue, Aug 9, 2011 at 2:44 PM, Hongwen Zhou {zhouhw33-at-gmail.com} wrote:
} } Dear Listers,
} }
} } We have a Gatan camera showing some unusall features on the gain
} } reference images (those "honeycomb" images). These features, according
} } to Gatan, are perhaps "physical artifacts" on the phosphor coating.
} } They also claim that the scintillator cannot be made defect-free. As
} } long as those artifacts do not affect image quality, there is no need
} } to replace the scintillator - as the new one may have its own problem.
} }
} } Has anyone met a similar problem? What would be the long-term effects
} } of the physical artifacts (of the phosphor coating) on the performance
} } of the camera? Right now, these artifacts can be corrected by software
} } method (gain reference corrected). However, will they lead to dead
} } pixels eventually?
} }
} } I should mention that these artifacts are not oil contaminants. We
} } baked the camera several times and they are still there. They are not
} } hardened oil contaminants either. A service engineer from Gatan had
} } cleaned the surface with ethanol. But those features remain on the
} } uncorrected images. Their latest explanation is they might be the
} } "physical artifacts on the phosphor coating".
} }
} } Any input is welcome. Also, if you would like to see how those
} } artifacts look like, please send me an email.
} }
} } Kind regards,
} }
} } Hongwen Zhou
} }
} }
} } Temple University
} } 1901 N 13th Street
} } Philadelphia, PA 19122
} } Tel: (215) 204-0366
} }
}
} ==============================Original Headers==============================
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} 4, 26 -- Subject: Re: Artifacts of the scintillator on a Gatan camera
} 4, 26 -- From: Hongwen Zhou {zhouhw33-at-gmail.com}
} 4, 26 -- To: Microscopy-at-microscopy.com
} 4, 26 -- Content-Type: text/plain; charset=ISO-8859-1
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} 13, 32 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
} 13, 32 -- Subject: RE: [Microscopy] Re: Artifacts of the scintillator on a Gatan camera
} 13, 32 -- Thread-Topic: [Microscopy] Re: Artifacts of the scintillator on a Gatan
} 13, 32 --  camera
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10, 28 -- Subject: Re: [Microscopy] Artifacts of the scintillator on a Gatan camera
10, 28 -- From: Hongwen Zhou {zhouhw33-at-gmail.com}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 10 Aug 2011 07:31:15 -0500
Subject: [Microscopy] viaWWW:Publisher looking for Electron Micrograph Images

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From: zhouhw33-at-gmail.com
Date: Wed, 10 Aug 2011 07:34:53 -0500
Subject: [Microscopy] Re: Artifacts of the scintillator on a Gatan camera

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Dear Toby,

Thanks for your suggestion. Please find the image in the attached link,

https://picasaweb.google.com/lh/photo/uCjBAq60wL8N8AbSCp4Nnw?feat=directlink

There are three artifacts on that image, one near the upper left
corner, one at the lower left corner, and one near the lower right
corner, respectively.

Regards,

Hongwen Zhou



On Wed, Aug 10, 2011 at 4:43 AM, {tobias.starborg-at-manchester.ac.uk} wrote:
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
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} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Dear Zhou,
}
}      It is difficult to picture what you mean by "artefacts" without an image.  Would it be possible for you to host the image on a website and put a link here, so that we can see what you are talking about?  I have to admit that I was also one of the people thinking that you were worried by the honeycomb effect of the fibre optics.
}
} TobyS
}
}
} Dr Tobias Starborg
} Senior Experimental Officer: 3DEM
} Michael Smith Building
} Oxford Road
} Manchester
} M13 9PT
} Tel: +44(0)1612755170
} http://manchesterpolara.org.uk
}
} ________________________________________
} X-from: zhouhw33-at-gmail.com [zhouhw33-at-gmail.com]
} Sent: 09 August 2011 21:08
} To: Tobias Starborg
} Subject: [Microscopy] Re: Artifacts of the scintillator on a Gatan camera
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
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} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} It seems that my words had caused some confusion. To clarify: when I
} say "artifacts", I did not refer to the honeycomb pattern. The
} artifacts are superimposed on the honeycomb pattern.
}
}
}
} On Tue, Aug 9, 2011 at 2:44 PM, Hongwen Zhou {zhouhw33-at-gmail.com} wrote:
} } Dear Listers,
} }
} } We have a Gatan camera showing some unusall features on the gain
} } reference images (those "honeycomb" images). These features, according
} } to Gatan, are perhaps "physical artifacts" on the phosphor coating.
} } They also claim that the scintillator cannot be made defect-free. As
} } long as those artifacts do not affect image quality, there is no need
} } to replace the scintillator - as the new one may have its own problem.
} }
} } Has anyone met a similar problem? What would be the long-term effects
} } of the physical artifacts (of the phosphor coating) on the performance
} } of the camera? Right now, these artifacts can be corrected by software
} } method (gain reference corrected). However, will they lead to dead
} } pixels eventually?
} }
} } I should mention that these artifacts are not oil contaminants. We
} } baked the camera several times and they are still there. They are not
} } hardened oil contaminants either. A service engineer from Gatan had
} } cleaned the surface with ethanol. But those features remain on the
} } uncorrected images. Their latest explanation is they might be the
} } "physical artifacts on the phosphor coating".
} }
} } Any input is welcome. Also, if you would like to see how those
} } artifacts look like, please send me an email.
} }
} } Kind regards,
} }
} } Hongwen Zhou
} }
} }
} } Temple University
} } 1901 N 13th Street
} } Philadelphia, PA 19122
} } Tel: (215) 204-0366
} }
}
} ==============================Original Headers==============================
} 4, 26 -- From zhouhw33-at-gmail.com Tue Aug  9 15:01:43 2011
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} 4, 26 -- Message-ID: {CAODik+v-bVBfHSKtXzO=dVs9X8WTsmhc80O3PwsADgzpOmhr7A-at-mail.gmail.com}
} 4, 26 -- Subject: Re: Artifacts of the scintillator on a Gatan camera
} 4, 26 -- From: Hongwen Zhou {zhouhw33-at-gmail.com}
} 4, 26 -- To: Microscopy-at-microscopy.com
} 4, 26 -- Content-Type: text/plain; charset=ISO-8859-1
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}
} ==============================Original Headers==============================
} 13, 32 -- From tobias.starborg-at-manchester.ac.uk Wed Aug 10 03:32:34 2011
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} 13, 32 -- From: Tobias Starborg {tobias.starborg-at-manchester.ac.uk}
} 13, 32 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
} 13, 32 -- Subject: RE: [Microscopy] Re: Artifacts of the scintillator on a Gatan camera
} 13, 32 -- Thread-Topic: [Microscopy] Re: Artifacts of the scintillator on a Gatan
} 13, 32 --  camera
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10, 28 -- Subject: Re: [Microscopy] Artifacts of the scintillator on a Gatan camera
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From: ben.micklem-at-pharm.ox.ac.uk
Date: Wed, 10 Aug 2011 08:44:51 -0500
Subject: [Microscopy] Artifacts of the scintillator on a Gatan camera

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This looks completely normal to me- in fact it looks pretty clean. It
seems like the image is inverted, compared to how our US1000 shows the
gain ref- i.e. the gaps between the bundles of fibres should be dark, not
bright.

The line in the bottom right looks like a ripple in the scintillator- our
older side-mount camera has many more of these- looks a bit like a rippled
sheet that has been pulled from one point on the edge, and it does not
affect the images once gain reference correction has been applied.

The two lighter patches on the left side I think are contamination (would
be dark patches if the image was the not inverted), but as they are not
completely opaque (as well as being on the edge of the frame which makes
the less noticeable) I don't think they will have any effect on your
images. Even small completely opaque contamination can be removed quite
well by the Gatan software. Over a certain number of pixels being
obscured, it can be a problem- they turn up as black hard-edges spots on
all images in the same place.



Ben


--
Research Support Manager
MRC Anatomical Neuropharmacology Unit, Mansfield Road,
Oxford, OX1 3TH, United Kingdom. Telephone: 01865 271866
{http://mrcanu.pharm.ox.ac.uk/}




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From: mh281909-at-dal.ca
Date: Wed, 10 Aug 2011 09:19:07 -0500
Subject: [Microscopy] Applying voltage to MEMS chip in SEM/FIB

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Hi,

I am with Dalhousie University MEMS research group and my research
area is focused on electrothermal actuators. I am looking for a method
to apply and control electrical power (Voltage=5~10 V, Current=2~10
mA) to MEMS chips while
it is in SEM or FIB vacuum chamber. Please let me know if you are aware of
any technique or tools/kits that can be used to achieve this goal. SEM
model: “Hitachi S-4700, FE-SEM”. FIB model: "Hitachi FB-2000A"

Kind regards,

Mehrdad


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From: wesaia-at-iastate.edu
Date: Wed, 10 Aug 2011 10:04:21 -0500
Subject: [Microscopy] viaWWW:EDX on nanoporous material

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Given those elements, you may be okay using higher voltages. You probably want to use something like Casino or some other Monte Carlo method to estimate the excitation volume. I ran simulations on pure Ag (the lightest component) and found that the excitation depth was about 1 um at 30 kV. It was about 700 nm at 25k V and about 500 nm at 20 kV. You should not be exciting your substrate.

I am uncertain what you mean when you say you had problems with low Pt concentration calling for higher accelerating voltages. What is your Au content? If it is high, then you need to make sure that your system is deconvoluting well. It will be more challenging to pick out a small intensity for the Pt M line next to a strong intensity for the Au line; however, it should be possible. You could use the L lines around 9.5 keV, but the intensity is much lower than for the M lines.

Such challenging deconvolutions will need critical review rather than simply believing the numbers. You should check the fit and examine the residuals to make sure everything is accounted for. I recommend that for all critical applications.

If there is a problem with your energy calibration and the peaks shift, then you could really have problems with the Pt intensity. Residuals would show leftover intensity on one side of the peak and a deficit of intensity on the other. Of course, that could be reflected in errors in the Pt concentration.

You could also have problems if the stored peak widths are not the same as the operating conditions at the time of analysis. We have an old Oxford ISIS system. The factory peak profiles were collected at the highest resolution setting, but we usually reduce the pulse processing time to count faster. Our peaks are a bit broader and the default profiles don't fit the actual spectra very well. (New software probably takes the pulse processing time into account and adjusts the profiles.) Therefore, we have collected our own profiles under the exact same conditions. The default profiles are pretty good, but our own profiles take all possible differences between our system and the factory into account.

I would recommend comparing results for L lines and M lines. At 30 kV, they should give you similar numbers if the deconvolution is good.

I would also recommend testing the analyses on a sample with no Pt (maybe on a sample of pure gold). You could overly the two spectra to see if Pt appears on a shoulder of the Au peak. You could also check the deconvolution results. If the software still reports Pt in the no-Pt sample, then you should downgrade the trust in your software.

Offhand, I don't know that porosity of 3-15 nm should cause problems with the analysis, provided it is homogeneously distributed. It would allow a deeper penetration of the beam, but it would allow a longer path-length for absorption on the way out. The mass absorption effects on the way in and the way out should be the same.

EDS can be quite a powerful technique if done well with good software. Just beware that not all software is created equal. You will need to watch it carefully as you apply it to a number of problems and determine how much trust you can put into the results.

Warren Straszheim


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Email: adrian.vega-at-utoronto,ca Name: Adrian Vega

Organization: Chemical Engineering - University of Toronto

Title-Subject: [Filtered] EDX on nanoporous material

Message: Good afternnon

I am doing some SEM/EDX analysis on nanoporous alloys containing
Ag-Au-Pt with a pore size between 3-15nm. This nanoporous alloy is on
top of an alloy with the same elements. The average thickness of this
nanoporous layer is around 8um. Typically, I prepare metallographic
specimens to either determine the thickness of my nanoporous alloys or
to analyze its composition by doing EDX on a cross section of the
sample. However, I found that because the Pt concentration is very low
(~1at.%) I have to use accelerating voltages higher than 20kV (I have
tried lower accelerating voltages obtaining very weir EDX results). I
have two main concerns. One is about the effect of porosity in my
results because I know that this type of analysis assumes 100% density
whether you are using standardless routines or with standards. My second
concern, which is related to the first one, is if there is any real
concern of having an interference of the substrate in my EDX reading,
mainly due to high interaction volume and high porosity. Therefore, I
was wondering of there is any correction or consideration to take into
account to do this kind of analysis.

Thanks in advance for any help

Best regards

Adrian Vega
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 11 Aug 2011 17:44:16 -0500
Subject: [Microscopy] viaWWW:Color SEM images

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Email: rct204-at-gmail.com Name: Ram Tiruvalam

Organization: Haldor Topsøe

Title-Subject: [Filtered] Color SEM images

Message: Hi everyone,

This might seem like a basic question so please bear with me. I am
looking for the best way to color SEM images . I am only aware of a few
techniques such as (a)acquiring images at diffrent accelerating voltages
and using them as RGB channels (b) using matlab scripts such as
"Colorization using Optimization" (c) using custom color tables.
But none of these techniques give me the stunning images i have seen
from various groups. how are the stunning color SEM images generated?
Should i use Adobe Photoshop ?

Any ideas?
I have access to a regular SEM with one SE detector and one BSE detector.

Ram


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From: rosemary.white-at-csiro.au
Date: Thu, 11 Aug 2011 18:02:34 -0500
Subject: [Microscopy] Re: viaWWW:Color SEM images

Contents Retrieved from Microscopy Listserver Archives
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A simple way is to take 3 separate images with individual quadrants of
your BSE detector, then combine them in photoshop or other package,
colouring the individual channels red, green and blue, respectively. Or
some other colour combination.
Someone else will probably know the software package you can buy to do the
other type of image colourisation - where individual objects are coloured
differently.
cheers,
Rosemary

Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334


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From: tina-at-pbrc.hawaii.edu
Date: Thu, 11 Aug 2011 19:14:53 -0500
Subject: [Microscopy] Re: viaWWW:Color SEM images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Ram-

Do you mean colorized like my images
http://www5.pbrc.hawaii.edu/microangela/
or Dennis Kunkel's http://www.denniskunkel.com/
all taken with "my" SEMs at the University of Hawaii? We use Photoshop.

In short, you need to learn to use your selection tools (especially Magic
Wand and Lasso) really well, then save and use the selected areas as masks
so that you can paint or fill with color in Color Mode.

If this is too brief, let me know.

Aloha,
Tina

} This might seem like a basic question so please bear with me. I am
} looking for the best way to color SEM images . I am only aware of a few
} techniques such as (a)acquiring images at diffrent accelerating voltages
} and using them as RGB channels (b) using matlab scripts such as
} "Colorization using Optimization" (c) using custom color tables.
} But none of these techniques give me the stunning images i have seen
} from various groups. how are the stunning color SEM images generated?
} Should i use Adobe Photoshop ?
}
} Any ideas?
} I have access to a regular SEM with one SE detector and one BSE detector.

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: jehrman-at-mta.ca
Date: Fri, 12 Aug 2011 07:13:44 -0500
Subject: [Microscopy] Lytro camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Listers,

Has anyone else seen this:

http://www.lytro.com/

My immediate questions:

1. Does it actually work?
2. Can it be applied to microscopy?

JME

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

If it isn't broken, fix it until it is.





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From: stefan.diller-at-t-online.de
Date: Fri, 12 Aug 2011 10:33:42 -0500
Subject: [Microscopy] Re: viaWWW:Color SEM images

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Ram,
as others from the list answered there are two principal ways to get colour in your SEM images:
- make good black and white images and add a lot of "Photoshop magic" to bring colour to the specimen
- use multiple detectors and perhaps also different kind of detectors (like SE or backscattered...) to get different signals back
from the specimen and use these signals to attribute aesthetical colours to the image (and add some Photoshop magic...).

For example: I use the secondary electrons for getting a very fast separation of parts on specimen with a small interaction volume
like hairs on insects or cells or substrate etc.
The backscattered detectors (I have three) I use to get surfaces (topography) ad hoc separated in a different colour.
You can also try to get more different images with different accelerating voltages and the best suited detectors for it...
Also distance of the detectors to the specimen can make very different iamges...

There is a PDF from a MIKROKOSMOS article which describes my work, but only in German language:
www.elektronenmikroskopie.info/pdf/Mikrokosmos06-99.pdf (1 MB)

I am using a digital image aquisition system from point electronic, www.pointelectronic.de, which can handle up to 8 detectors and
scan up to 4 detectors in a resolution of max. 16kx16k pixel. The scanning software has the ability to directly mix the signals
from the SEM into a coloured image.

For the images, have a look at:
http://www.elektronenmikroskopie.info/galerie%20-%20rem-biologie.htm for biologic specimen
and
http://www.elektronenmikroskopie.info/galerie%20-%20rem-material.htm for some images from material science.
Sorry, pages are only in German language up to now and the site is still in construction.

Best wishes,
Stefan

-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------



Am 12.08.11 00:48, schrieb microscopylistserver-noreply-at-microscopy.com:
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} Title-Subject: [Filtered] Color SEM images
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} Message: Hi everyone,
}
} This might seem like a basic question so please bear with me. I am
} looking for the best way to color SEM images . I am only aware of a few
} techniques such as (a)acquiring images at diffrent accelerating voltages
} and using them as RGB channels (b) using matlab scripts such as
} "Colorization using Optimization" (c) using custom color tables.
} But none of these techniques give me the stunning images i have seen
} from various groups. how are the stunning color SEM images generated?
} Should i use Adobe Photoshop ?
}
} Any ideas?
} I have access to a regular SEM with one SE detector and one BSE detector.
}
} Ram
}
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From: rosemary.white-at-csiro.au
Date: Sat, 13 Aug 2011 20:21:37 -0500
Subject: [Microscopy] Re: Lytro camera

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hmmm, is it just a fancy way of presenting extended focus images? You
click on the picture and it knows which image in the through focus series
to show?

Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
M 61 2 420 972 028
E rosemary.white-at-csiro.au


On 12/08/11 10:19 PM, "jehrman-at-mta.ca" {jehrman-at-mta.ca} wrote:

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8, 31 -- Subject: Re: [Microscopy] Lytro camera
8, 31 -- From: Rosemary White {rosemary.white-at-csiro.au}
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From: microwink-at-gmail.com
Date: Sat, 13 Aug 2011 21:08:59 -0500
Subject: [Microscopy] Lytro camera

Contents Retrieved from Microscopy Listserver Archives
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Hi Rosemary,

This type of camera is known as a plenoptic camera. Wikipedia has a
short description of this technology here:

http://en.wikipedia.org/wiki/Plenoptic_camera

The references do a good job explaining the technology in depth. In
fact, reference 2 is a paper coauthored by the founder, Dr. Ren Ng, of
Lytro. This video from Adobe shows the technology in action:

http://www.youtube.com/watch?v=jS7usnHmNZ0

Cheers,
Chris

On Sat, Aug 13, 2011 at 9:31 PM, {rosemary.white-at-csiro.au} wrote:
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} Hmmm, is it just a fancy way of presenting extended focus images?  You
} click on the picture and it knows which image in the through focus series
} to show?
}
} Rosemary White
} CSIRO Plant Industry
} GPO Box 1600
} Canberra, ACT 2601
} Australia
}
} T 61 2 6246 5475
} F 61 2 6246 5334
} M 61 2 420 972 028
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--
Christopher Winkler
Dynamic Characterization Group
http://www.materials.drexel.edu/dcg/
Drexel University
267-496-0587


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11, 28 -- Subject: Re: [Microscopy] Re: Lytro camera
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From: mike.bode-at-resaltatech.com
Date: Sun, 14 Aug 2011 19:22:19 -0500
Subject: [Microscopy] Lytro camera

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I saw this (new) technology, and my first impulse was the same: Can that be
used for microscopy? If you look at the technology, it works essentially by
breaking up the image into many smaller images through the use of an array
of microlenses. These lenses are spatially distributed, and each one sees
the object from a slightly different angle. It's like "stereo on steroids"
(Hmm, perhaps I should trademark that :-).
A modern light microscope is "infinity corrected". The objective lenses are
designed so that the light is focused to infinity. If I understand that
correctly, the microlenses in a such a camera would all see the same image,
and the images could not be focused after the fact.
Of course, it might be possible to design objective lenses that allow the
use of such a camera.

P.S.: I'd like to thank everybody who came to our booth at the M&M meeting
in Nashville. I hope everybody who was there had a productive and good time.

---
Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com





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X-from: jehrman-at-mta.ca [mailto:jehrman-at-mta.ca]
Sent: Friday, August 12, 2011 6:22 AM
To: mike.bode-at-resaltatech.com

Hi Listers,

Has anyone else seen this:

http://www.lytro.com/

My immediate questions:

1. Does it actually work?
2. Can it be applied to microscopy?

JME

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

If it isn't broken, fix it until it is.





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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 15 Aug 2011 07:24:14 -0500
Subject: [Microscopy] viaWWW:Color SEM images- Thanks

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Email: rct204-at-gmail.com Name: Ram Chandra

Organization: HALDOR TOPSØE

Title-Subject: [Filtered] Color SEM images- Thanks

Message: Dear All,

Thank you very much for the wonderful responses and teaching me how to
color SEM images.
I will definitely try some of the techniques and software (Thanks for
the Gimp tip Bryan) you have mentioned.

Rosemary: I will definitely try you technique as it seems possible on my
microscope. thanks.

Tina: Your images and coloring are spectacular. In the cases of "More
stuff" and "bacteria" in the grows on you section
(http://www5.pbrc.hawaii.edu/microangela/)it seems spectacularly hard to
color each one of the bacteria and fibers individually with the magic
lasso tool. Is it just a lot of patience? Or do you have some nice
tricks? I am surprised that the borders can look so crisp after
photoshop manipulation.

Stefan: Your images just look very natural and extremely beautiful.
thanks for sharing
it.(http://www.elektronenmikroskopie.info/galerie%20-%20rem-biologie.htm) Let
me see how good google translate is with your german paper :-)

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 15 Aug 2011 16:19:34 -0500
Subject: [Microscopy] viaWWW:Help - Johns Hopkins grad Student research project

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Email: jnorona1-at-jhu.edu Name: Joao Norona

Organization: Johns Hopkins University

Title-Subject: [Filtered] Help - Johns Hopkins grad Student research project

Message: My name is Joao Noroña and I’m a graduate student from Johns
Hopkins University. IÂ’m doing a project regarding illumination sources
in the Microscopy market and would really appreciate it if you could
spare couple of minutes to take a brief online survey regarding the
types of equipment you use in your labs and their illumination sources.

I came across this list serve during my online research, and hopefully,
with your help, I will be able to get some information that is not
available online.

IÂ’m not trying to push any product or sell you anything, I promise! IÂ’m
just trying to get some data directly from the people that know this
type of equipment best, the people on this listserve (experienced users).
As you know, the more data points I gather, the more validity there will
be to my research, so if after answering the survey you feel comfortable
enough, I would greatly appreciate it if you could forward it along to
fellow researchers at other labs.

I realize that this request may be a bit intrusive and I apologize in
advance, I just have not been able to find this information elsewhere.

https://www.surveymonkey.com/s/NG26LZL

Thank you very much for your help and time!

Joao


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From: garyeaston-at-scannerscorp.com
Date: Tue, 16 Aug 2011 15:39:53 -0500
Subject: [Microscopy] BSE Detector upgrade

Contents Retrieved from Microscopy Listserver Archives
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Hi Listers,
Are there any companies, other than K&E or Robinson, that
manufactures a BSE Detector System upgrade? Please reply off-line, thanks.

Gary Easton, Pres.




Scanners Corporation
90 Aileron Court
Suite 6
Westminster, MD USA 21157
410-857-7633

SEM Service Provider

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 17 Aug 2011 08:54:41 -0500
Subject: [Microscopy] viaWWW:cathodoluminescence imaging

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Email: linda.romano-at-live.com Name: Linda Romano

Organization: private

Title-Subject: [Filtered] cathodoluminescence imaging

Message: Does anyone know a place to get cathodoluminescence performed
in the US as a paid service?
Thank you

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From: donovan-at-uoregon.edu
Date: Wed, 17 Aug 2011 10:44:08 -0500
Subject: [Microscopy] Re: viaWWW:cathodoluminescence imaging

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Hello Linda,
Try the link below. I believe MicroTrace Scientific run by Skip Palenik performs catholuminscence.
Good luck.

Frank

http://www.microtracescientific.com/labratory/equipment/cl.htm


-----Original Message-----
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[mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Wednesday, August 17, 2011 10:06 AM
To: Frank Karl

Hi Linda,
We can do that:

http://camcor.uoregon.edu/microanalytical/

john

At 07:00 AM 8/17/2011, microscopylistserver-noreply-at-microscopy.com wrote:



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From: mary.raven-at-lifesci.ucsb.edu
Date: Wed, 17 Aug 2011 14:32:22 -0500
Subject: [Microscopy] LM: inverted and upright microscopes

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Dear Listers
I am a big fan of data, calculations or references if you can supply
any. There is some lore in my facility that inverted microscopes are
optically inferior to upright microscopes. I realize they have a more
complicated light path. So, I'm wondering with a modern microscope how
inferior, if at all, are inverted microscopes compared to upright
microscopes everything else being equal (objectives, filters, camera and
sample preparation).
Thanks for any input
Best Regards
Mary

--
Mary Raven
Microscopy Facility Director
Neuroscience Research Institute&
Molecular, Cellular& Developmental Biology
Biology 2 Building, room 5173
The University of California
Santa Barbara, CA 93106-5060

https://ucsb-microscopy.ucsd.edu/schedule/
http://www.lifesci.ucsb.edu/mcdb/research/facilities/microscopy/microscopy.html
Phone: (805) 893 8702
Fax: (805) 893 2005



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From: baskin-at-bio.umass.edu
Date: Wed, 17 Aug 2011 15:00:12 -0500
Subject: [Microscopy] Re: LM: inverted and upright microscopes

Contents Retrieved from Microscopy Listserver Archives
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Mary,
The customary difference is that an inverted scope is
supplied with a long working distance and hence lower NA condenser.
So for transmitted light modes, the NA of the inverted condenser is
too small to fill the objective and hence imaging suffers. Note that
this doesn't matter for fluorescence and other incident light modes,
and many inverteds can be equipt with a high NA condenser and thus
brought to par (of course the working distance will go down).

Hope this helps,
Tobias


At 2:32 PM -0500 8/17/11, mary.raven-at-lifesci.ucsb.edu wrote:
}
}
} Dear Listers
} I am a big fan of data, calculations or references if you can supply
} any. There is some lore in my facility that inverted microscopes are
} optically inferior to upright microscopes. I realize they have a more
} complicated light path. So, I'm wondering with a modern microscope how
} inferior, if at all, are inverted microscopes compared to upright
} microscopes everything else being equal (objectives, filters, camera and
} sample preparation).
} Thanks for any input
} Best Regards
} Mary
}
} --
} Mary Raven
} Microscopy Facility Director
} Neuroscience Research Institute&
} Molecular, Cellular& Developmental Biology
} Biology 2 Building, room 5173
} The University of California
} Santa Barbara, CA 93106-5060
}
} https://ucsb-microscopy.ucsd.edu/schedule/
} http://www.lifesci.ucsb.edu/mcdb/research/facilities/microscopy/microscopy.html
} Phone: (805) 893 8702
} Fax: (805) 893 2005
}
}

--
_ ____ __ ____
/ \ / / \ / \ \ Tobias I. Baskin
/ / / / \ \ \ Biology Department
/_ / __ /__ \ \ \__ 611 N. Pleasant St.
/ / / \ \ \ University of Massachusetts
/ / / \ \ \ Amherst, MA, 01003
/ / ___ / \ \__/ \ ____
www.bio.umass.edu/biology/baskin
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From: bozhilov-at-ucr.edu
Date: Wed, 17 Aug 2011 18:07:31 -0500
Subject: [Microscopy] PIPS modulation board

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We are looking for a replacement beam modulation board for our Gatan PIPS ion mill system.
The S/N of the old board is 691 0240 Rev A.

Gatan currently sells newer version modulation boards which are not compatible with our system, 1996 model PIPS.


Krassimir Bozhilov
Central Facility for Advanced Microscopy and Microanalysis
University of California,
Riverside, CA 92521

phone 951 827 2998
fax 951 827 2489



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 17 Aug 2011 18:22:56 -0500
Subject: [Microscopy] viaWWW:replacement backscattered electron detectors

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Email: edward.duke-at-sdsmt.edu Name: Ed Duke

Organization: South Dakota School of Mines and Technology

Title-Subject: [Filtered] replacement backscattered electron detectors
for FE-SEM

Message: We are planning to replace the BSD on a Zeiss Supra40 VP field
emission SEM.

I am considering third-party detectors such as KE, probably a
retractable 18 mm or 24 mm diode type. We need a pretty sensitive
detector because of generally low probe current (~1-5 nA) and long
working distance for combined BSD/EDS (15 mm).

Does anyone have any experience or suggestions with KE or other
detectors, especially in FE-SEMs.

Thanks,
Ed

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From: dcvsr1-at-gmail.com
Date: Thu, 18 Aug 2011 12:41:39 -0500
Subject: [Microscopy] SEM - ImageJ Plugin or Macro for Layer Thickness

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone have a plugin or macro written for ImageJ that could be used to
measure the layer thickness of a multi- layered structure? I obtain images
from SEM so I have grayscale images that show the layers in different shades
of gray. It would be nice if the plugin could find and draw the boundary
between the layers and then give me the minimum, maximum and average
distance between the boundaries.



Daniel VanHart

Principal Research Support Specialist
Center for Autonomous Solar Power - BI Room 2210
Binghamton University
P.O. Box 6000
Binghamton, NY   13902-6000


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 19 Aug 2011 07:46:22 -0500
Subject: [Microscopy] viaWWW:refurbished SEM/CL

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Email: linda.romano-at-live.com Name: Linda Romano

Organization: consultant

Title-Subject: [Filtered] refurbished SEM/CL

Message: Does anyone know or have a refurbished SEM for sale? Having
cathodoluminescence is a plus.

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From: frank_karl-at-ardl.com
Date: Fri, 19 Aug 2011 09:07:42 -0500
Subject: [Microscopy] Edwards S150B sputter coater

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Once again I return to well of Microscopy knowledge and ask to drink not deeply, but clearly. In other words, I need help.

We have a Edwards Sputter Coater S150B. I can't get a good vacuum and I've traced it to rubber o-ring used to electrically isolated components from each other. I have a parts number, but as you know- (POOF! it's magic!) nobody has them. The part number is 11-E087-12-061. Does any one have any dimensions and hardness data on this ring so I can have a new one made? I'm reluctant to dig it out until I know I can get a new one.

Also, the high voltage cable is a cobbled together BNC connector. That needs replacement, but I would like to replace it with something a little bit more robust (we broke one of the four internal crimp connectors). Any Ideas?

Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



________________________________
This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.


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From: colijn.1-at-osu.edu
Date: Fri, 19 Aug 2011 10:35:27 -0500
Subject: [Microscopy] Re: Edwards S150B sputter coater

Contents Retrieved from Microscopy Listserver Archives
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Hi Karl,

O-rings are pretty standard items. Can you get the measurements from
the old O-ring? (wall thickness & either ID or OD) There should be
standard "Parker" numbers of the form "2-abc". Where "a" is the wall
thickness in 1/16" and "bc" describe the diameter. Note that the wall
thickness for "a" numbers 0 & 1 doesn't follow the general rule.

Otherwise you can measure the groove. O-rings are generally compressed
to 70% of their diameter, so the groove depth should let you calculate
the wall thickness.

The Parker O-ring handbook can be found here:
http://www.parker.com/literature/O-Ring%20Division%20Literature/2-xxx%20sizes.pdf

A standard industrial supply house such as Grainger should carry
O-rings. I've also picked up O-rings in the plumbing section at my
local home supply store.

Cheers,
Henk

At 8/19/2011 10:08 AM, frank_karl-at-ardl.com wrote:
}
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}
} Once again I return to well of Microscopy knowledge and ask to drink not deeply, but clearly. In other words, I need help.
}
} We have a Edwards Sputter Coater S150B. I can't get a good vacuum and I've traced it to rubber o-ring used to electrically isolated components from each other. I have a parts number, but as you know- (POOF! it's magic!) nobody has them. The part number is 11-E087-12-061. Does any one have any dimensions and hardness data on this ring so I can have a new one made? I'm reluctant to dig it out until I know I can get a new one.
}
} Also, the high voltage cable is a cobbled together BNC connector. That needs replacement, but I would like to replace it with something a little bit more robust (we broke one of the four internal crimp connectors). Any Ideas?
}
} Frank Karl
} Microscopist
} ARDL
} 2887 Gilchrist Road
} Akron, Ohio 44305
} 330-794-6600
}
}
}
} ________________________________
} This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.
}
}
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} 8, 25 -- Date: Fri, 19 Aug 2011 10:07:40 -0400
} 8, 25 -- Subject: Edwards S150B sputter coater
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--
Hendrik O. Colijn
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

==============================Original Headers==============================
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9, 25 -- From: "Hendrik O. Colijn" {colijn.1-at-osu.edu}
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From: kenconverse-at-qualityimages.biz
Date: Fri, 19 Aug 2011 12:11:44 -0500
Subject: [Microscopy] Re: Edwards S150B sputter coater

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Karl,
Edwards is saying that if you own one of their coaters, they are still
providing support. I'd call them for the size (or a manual).
http://www.edwardsvacuum.com/Products/List.aspx?r=125
and there is the possibility that the o-ring may be metric. I think it was
Will Bigellow that put up this link
https://zatkoff.com/index.asp
Zatkoff seems to have an excellent selection of Parker, European metric and
JIS (Japan Industrial Standard - used by JEOL) o-rings.

Ken Converse
Owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: colijn.1-at-osu.edu [mailto:colijn.1-at-osu.edu]
Sent: Friday, August 19, 2011 11:37 AM
To: kenconverse-at-qualityimages.biz

Hi Karl,

O-rings are pretty standard items. Can you get the measurements from
the old O-ring? (wall thickness & either ID or OD) There should be
standard "Parker" numbers of the form "2-abc". Where "a" is the wall
thickness in 1/16" and "bc" describe the diameter. Note that the wall
thickness for "a" numbers 0 & 1 doesn't follow the general rule.

Otherwise you can measure the groove. O-rings are generally compressed
to 70% of their diameter, so the groove depth should let you calculate
the wall thickness.

The Parker O-ring handbook can be found here:
http://www.parker.com/literature/O-Ring%20Division%20Literature/2-xxx%20size
s.pdf

A standard industrial supply house such as Grainger should carry
O-rings. I've also picked up O-rings in the plumbing section at my
local home supply store.

Cheers,
Henk

At 8/19/2011 10:08 AM, frank_karl-at-ardl.com wrote:
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} Once again I return to well of Microscopy knowledge and ask to drink not
deeply, but clearly. In other words, I need help.
}
} We have a Edwards Sputter Coater S150B. I can't get a good vacuum and
I've traced it to rubber o-ring used to electrically isolated components
from each other. I have a parts number, but as you know- (POOF! it's
magic!) nobody has them. The part number is 11-E087-12-061. Does any one
have any dimensions and hardness data on this ring so I can have a new one
made? I'm reluctant to dig it out until I know I can get a new one.
}
} Also, the high voltage cable is a cobbled together BNC connector. That
needs replacement, but I would like to replace it with something a little
bit more robust (we broke one of the four internal crimp connectors). Any
Ideas?
}
} Frank Karl
} Microscopist
} ARDL
} 2887 Gilchrist Road
} Akron, Ohio 44305
} 330-794-6600
}
}
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--
Hendrik O. Colijn
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

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From: bozzola-at-siu.edu
Date: Fri, 19 Aug 2011 13:16:12 -0500
Subject: [Microscopy] LM: inverted microscope purchase

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A colleague of mine is considering the purchase of an Accu-Scope 3032
inverted brightfield phase microscope from New York Microscope Co.

Personally, I have not heard anything about this brand or company and
am inquiring if anyone on this list has experience with either of
them. The cost ranges from $2.5 to 2.7K, which seems a bit on the low
side.

Thank you and best regards from Carbondale, IL.

JB

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: bozzola-at-siu.edu
Date: Fri, 19 Aug 2011 17:28:59 -0500
Subject: [Microscopy] poster printer recommendations

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

It looks like our HP 5000PS poster printer may be down for the count
due to a hard drive failure. I am attempting to order one but the part
is hard to locate.

So, in the event we have to replace it, I was wondering what 42-44
inch wide poster printer is favored by our group.

I am looking for a reliable printer with UV resistant inks.

Thank you kindly.

JB

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 19 Aug 2011 17:42:26 -0500
Subject: [Microscopy] viaWWW:PHILIPS 505 SEM

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This Question/Comment was submitted to the Microscopy Listserver
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Email: exploratorium-at-tiscali.it Name: Giovanni De Caro

Organization: Exploratorium Casalciprano - Campobasso
Title-Subject: [Filtered] PHILIPS 505 SEM

Message: Hi all. I have been offered at a low price a dismissed Philips
505 sem which I would like to use for educational purposes (science
museum for youngsters). The SEM has an EDAX and the seller says it was
working when shut off a couple of years ago. I would like to know from
some microscopist who has used or currently uses this instrument which
are the main components of this SEM which are more prone to go out of
service and if this is the kind of instrument which rarely needs
technical assistance (a "workhorse") or, on the other hand, if it is a
delicate SEM which with years tends to bee too expensive to repair and
maintain . To end , I need to know which are the things to inspect first
in order to understand if the instrument has undergone fatal breakdowns
which renders the SEM non reparable if not at a very high cost. Thank
you for your kind help. Giovanni, Italia

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 21 Aug 2011 06:53:24 -0500
Subject: [Microscopy] viaWWW:Veteran Expert on Cambridge Stereoscan 180

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Email: scopes.master-at-gmail.com Name: Hamid R. Shakeri

Organization: Aviceena Metallurgical Research Services

Title-Subject: [Filtered] Veteran Expert on Cambridge Stereoscan 180

Message: Are there any Veterans of Electron Microscopy with extensive
experience with Cambridge Stereoscan 180 around here? I am trying to
make one of these works again and need help in this regard. Thank you!

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From: dsherman-at-purdue.edu
Date: Mon, 22 Aug 2011 21:34:39 -0500
Subject: [Microscopy] NanoAl-nitrocellulose staining

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

I need advise on a new TEM sample. This is nano aluminum particles coated
(or so we hope) with nitrocellulose. It is easy to suspend the nanoAl in
ETOH or MeOH using sonicating and then depositing it on a coated grid for
imaging.

Problem comes in visualizing the nitrocellulose coating. The nanoAl cannot
be diluted in water or it will react releasing hydrogen. What I need is the
equivalent of a non-aqueous negative stain to see the coating. I have tried
aqueous UA and also UA in 70% MeOH without getting the desired negative
staining.

Is it possible to get negative staining with non-aqueous systems? Any
suggestions as to how to do it if it is possible would be appreciated as
would other suggestions on imaging these particles.

Debby


---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy




==============================Original Headers==============================
10, 29 -- From dsherman-at-purdue.edu Mon Aug 22 21:34:37 2011
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10, 29 -- CC: David Reese {reesed-at-purdue.edu}
10, 29 -- Date: Mon, 22 Aug 2011 22:34:28 -0400
10, 29 -- Subject: NanoAl-nitrocellulose staining
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From: AJBowling-at-dow.com
Date: Tue, 23 Aug 2011 08:27:44 -0500
Subject: [Microscopy] NanoAl-nitrocellulose staining

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Debby,

Well, this isn't negative staining, but perhaps you could try a
high-angle (75-80 deg) Pt-C shadow. I think a rotary shadow would give
you the best results (although a unidirectional shadow might be enough
to demonstrate the presence of the nitrocellulose layer). I'm thinking
just a light coating, so you can see a clear zone of nitrocellulose
centered around each black aluminum particle, that would be absent on
similar, non-coated particles...

Andy Bowling




_____________________
Andrew J Bowling, PhD
Discovery R&D
Dow AgroSciences
9330 Zionsville Rd
Indianapolis, IN 46268
317-337-3878




-----Original Message-----
X-from: dsherman-at-purdue.edu [mailto:dsherman-at-purdue.edu]
Sent: Monday, August 22, 2011 10:46 PM
To: Bowling, Andrew (AJ)

Hi all,

I need advise on a new TEM sample. This is nano aluminum particles
coated
(or so we hope) with nitrocellulose. It is easy to suspend the nanoAl
in
ETOH or MeOH using sonicating and then depositing it on a coated grid
for
imaging.

Problem comes in visualizing the nitrocellulose coating. The nanoAl
cannot
be diluted in water or it will react releasing hydrogen. What I need is
the
equivalent of a non-aqueous negative stain to see the coating. I have
tried
aqueous UA and also UA in 70% MeOH without getting the desired negative
staining.

Is it possible to get negative staining with non-aqueous systems? Any
suggestions as to how to do it if it is possible would be appreciated as
would other suggestions on imaging these particles.

Debby


---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy




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10, 29 -- CC: David Reese {reesed-at-purdue.edu}
10, 29 -- Date: Mon, 22 Aug 2011 22:34:28 -0400
10, 29 -- Subject: NanoAl-nitrocellulose staining
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From: sergei2-at-ornl.gov
Date: Tue, 23 Aug 2011 15:24:13 -0500
Subject: [Microscopy] CNMS SPM workshop - updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear colleagues

This is the last week for the registration for the workshop at the
Center for Nanophase Materials Sciences:
Advanced Scanning Probe Microscopies at the CNMS: Materials Structure
and Function from Atomic to Micron Scales (September 21-22, 2011).

The registration information is available at:
https://www.ornl.gov/cnms/2011/index.cfm
A number of travel fellowships will be available for the graduate
students on the first come-first served basis (contact Art Baddorf,
baddorfap-at-ornl.gov, for details).
Several of the companies will run the demos of their latest SPM
instruments. The tours of ORNL SPM machines will be available.

The workshop features presentations by CNMS staff members and SPM industry
focused on technical capabilities developed and/or available at CNMS.
These include:

• Atomic and vibrational imaging by low-temperature high magnetic field STM
• Transport characterization by 4-probe STM/SEM
• Scanning Electron Microscopy with Polarization Analysis
• Piezoresponse Force Microscopy and Spectroscopy
• Band Excitation SPMs for thermal, magnetic, and mechanical property
mapping
• Electrochemical Strain Microscopy of Li-ion and oxygen conductors
• Microwave imaging and spectroscopy

This workshop will also feature presentation by leading SPM vendors
devoted to the
latest advances in SPM modes. Ultimately, we aim to build a network of
advanced SPM
practitioners to promote rapid dissemination of theoretical knowledge,
experimental protocols,
and novel technique development in these rapidly growing areas.

For more information and registration, please check the CNMS web site at
www.cnms.ornl.gov or contact the organizers at sergei2-at-ornl.gov or
baddorfap-at-ornl.gov.

--
Sergei V. Kalinin
co-Theme Leader for Functional Imaging on the Nanoscale
The Center for Nanophase Materials Sciences
and Materials Sciences and Technology Division
Oak Ridge National Laboratory
Oak Ridge, TN 37922

Adjunct Associate Professor,
Department of Materials Science and Engineering,
University of Tennessee, Knoxville

Phone: (865) 241-0236
http://imaging.ornl.gov


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11, 26 -- Date: Tue, 23 Aug 2011 16:24:12 -0400
11, 26 -- From: "Sergei V. Kalinin" {sergei2-at-ornl.gov}
11, 26 -- Subject: CNMS SPM workshop - updates
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From: John.Mardinly-at-asu.edu
Date: Tue, 23 Aug 2011 16:49:53 -0500
Subject: [Microscopy] Nanotechnologists Are Targets of Unabomber Copycat, Alarming Universities - Technology - The Chronicle of Higher Education

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Anyone working in nanotechnology, and that probably includes a lot of microscopists, should be aware of this troubling development.

http://chronicle.com/article/Nanotechnologists-Are-Targets/128764/


John Mardinly
ASU



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From: jehrman-at-mta.ca
Date: Wed, 24 Aug 2011 07:40:31 -0500
Subject: [Microscopy] Sorvall/Porta-Blum MT-2 and LKB knifemaker, anyone?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

I've just unearthed an ancient Sorvall/Porta-Blum MT-2 and much newer
LKB 7801A knifemaker. I used both of these some 15 years ago and they
were operational, but as I have no glass strips I'm unable to test
either one now. Both appear to have all their parts (The MT-2 is missing
the "Reset" button, but the lever that the button actually moves is
accessible). The knifemaker is fairly pristine (I see one trim screw
missing on the back). In the past the microtome was marginally capable
of cutting ultrathin sections, but as it appears to have been "rode hard
and put away wet" so to speak in its life in other labs, I'm not sure
about it now.

Any takers? I can give them away if someone pays shipping, but will also
consider the highest cash(!) or trade offer. We're primarily a JEOL SEM
lab, so I'd be interested in things like unused "K"-type filaments,
10x10 mm stubs, etc. that you may have hanging around your neck and want
to get rid of. Be aware that the microtome is boat-anchor heavy, so I
would imagine shipping costs would be significant.

If I don't hear from anybody within a week, at least the microtome is
headed for a better place (i.e., the dumpster).

Thanks,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

'It's only when you look at an ant through a
magnifying glass on a sunny day that you realise
how often they burst into flames.' - Harry Hill


==============================Original Headers==============================
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From: eschumacher-at-mccrone.com
Date: Wed, 24 Aug 2011 08:39:23 -0500
Subject: [Microscopy] Short Course Announcement - Transmission Electron Microscopy

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings Fellow Microscopists,

The Hooke College of Applied Sciences, located in Westmont, IL, is offering a Transmission Electron Microscopy short course October 18-20, 2011. In addition to lectures, this course emphasizes hands-on training using state of the art equipment. For further details and registration information, please visit our website:

http://www.hookecollege.com/

You can also contact me directly if you have questions about the course.

Regards,

Elaine

*********************************************************************
Elaine F.Schumacher
Senior Research Scientist
McCrone Associates, Inc.
850 Pasquinelli Drive
Westmont, IL 60559-5539 USA
630-887-7100 (tel)
630-887-7417 (fax)
E-mail: eschumacher-at-mccrone.com
Web Site: www.mccrone.com



*********************************************************************
This message and any attachments are solely for the
intended recipient. If you are not the intended recipient,
disclosure, copying, use or distribution of the information
included in this message is prohibited.
*********************************************************************


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From: jehrman-at-mta.ca
Date: Wed, 24 Aug 2011 08:43:01 -0500
Subject: [Microscopy] LKB knifemaker spoken for on free basis

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Listers,

I figured the knifemaker would be popular. I've already promised it to
someone on a "free" basis but with our budget constraints have reserved
the right to give it to someone else who can trade for something we
need. So dig through your closets - new JEOL "K" filaments don't grow on
trees, but they do tend to lurk in forgotten dark corners.

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

'It's only when you look at an ant through a
magnifying glass on a sunny day that you realise
how often they burst into flames.' - Harry Hill


==============================Original Headers==============================
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From: ce-at-personifysearch.com
Date: Fri, 26 Aug 2011 10:44:48 -0500
Subject: [Microscopy] Job Opportunity - Head of Business Segment Clinical Imaging

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Head of Business Segment Clinical Imaging


The Company:

Our client is a leading developer and producer of innovative high-tech
precision optics systems for the analysis of microstructures. As one of
the market leaders in each of the fields of Microscopy, Confocal Laser
Scanning Microscopy, Imaging Systems, Specimen Preparation and Medical
Equipment. Comprising nine manufacturing facilities in seven countries,
sales and service companies in 20 countries and an international network
of dealers, the company is represented in over 100 countries.

The Opportunity:

The company currently has an opening for a Head of Business Segment
Clinical Imaging. This position can be based in Wetzlar, Germany or
Newcastle, UK. All applicants must not be adverse to travel, as this is a
position that may require you to travel when necessary.

Base salary is commensurate with experience plus bonus

Primary Responsibilities:

The Head of Business Segment Clinical Imaging will maintain ownership of
business in clinical customer segment, creating transparency in top line,
and maximizing business in that market. This position will manage all
Product Marketing and R&D functions related to business segment. The Head
of Business Segment will also maintain ownership of defined product range
over complete product life cycle, product and roadmap definition. This
role will plan and execute expansion into new application areas, ownership
of market and competitive intelligence.

Additional Responsibilities:
- Setting up the strategic plan and budget for Clinical Imaging by
leveraging microscopy technology into the niche application space
- Define product developments and product improvements to be made, drive
the product roadmap in the segment in order to guarantee maximum business
volume and margin, as well as customer satisfaction with the company's
product
- Evaluation and selection of innovative ideas, in order to build up a
technical concept for the product, teamwork with R&D in order to realize
innovative projects and bring them to the market
- Preparation and planning of market launches and presentations together
with the Selling Unit, in order to successfully launch new products and
sell them to the customers
- Manage the R&D Manager and align R&D strategy and execution with
business plan and budget; Ensure deadlines for R&D roadmaps are met
- Responsible for global pricing strategy to ensure market competitive
prices
- Management and development of associates in two sites (UK and Germany)
in order to ensure high motivation and high performance within the team by
using provided HR tools and processes

Education and Experience Required:

- Studies in Natural Sciences
- Knowledge in life science, medical devices and economics
- Experience in International Marketing
- Experience in Microscopy is highly desired
- Track record in successful product definition and market launches
- Leadership skills to lead and strengthen the product management and
application terms
- Excellent English skills; Fluency in German is a plus but not required


If you meet and/or exceed the experience criteria, please submit your
resume for review by clicking on the link below (you may have to copy and
paste it into your browser) or by emailing your info to Christy Edwards at
ce-at-personifysearch.com. We wish everyone the best of luck. Unfortunately
only qualified candidates will be considered.


http://tinyurl.com/LEU-HeadofBusSeg-GE-UK


Christy Edwards
Sr. e-Recruitment Consultant
Personify
5020 Weston Parkway
Suite 315
Cary, North Carolina 27513
(Tel) 800.875.6188 direct ext 109
(Fax) 919.460.8726
 www.personifysearch.com


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 27 Aug 2011 07:51:31 -0500
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: SX100 - set up and analyzing

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://microscopy.com/MicroscopyListserver/MLFormMail.html
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Remember this posting is most likely not from a Subscriber, so when replying please copy both
araz79kh as well as the MIcroscopy Listserver
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Email: araz79kh Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] set up and analyzing problem

Message: Hi All

I worked with SX100 but it makes more trouble for us and unfortunately it isn't user-friendly. now I
have problem in set up the system. when I calibrated the system and save it after load the
considering setup it is failed and never calibrated especially when choosing the point for analyzing
and acquire it. and the error comes: error from setup: anomaly of high voltage or anomaly of gun
current. I changed the filament many times but nothing was happened and previous error is repeated
again. why is it occur? what can I do to fix this problem? what is the good shape for beam when we
write gun scan high and low scan high? please help me in this cases.

best regards

Araz

Login Host: 94.183.106.107
---------------------------------------------------------------------------



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From: dsherman-at-purdue.edu
Date: Sat, 27 Aug 2011 10:49:15 -0500
Subject: [Microscopy] Lab director-Job posting

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The following position is now posted:

Director, Life Science Microscopy Facility ‹ West Lafayette ‹ Horticulture &
Landscape Architecture (Job Number: 1101380)

http://purdue.taleo.net/careersection/wl/jobdetail.ftl

http://www.purdue.edu/hr/Employment/


Debby
---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy





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From: frank_karl-at-ardl.com
Date: Mon, 29 Aug 2011 09:10:08 -0500
Subject: [Microscopy] Thanks!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I want to thank everyone with their suggestions about how to get our sputter up and running. What did we find?

Well, the vacuum fixed itself. Go figure. Must have been a particle of crud on a gasket, we thought they looked clean, but who knows. As far as the gold coating, it was a bad spot in the high voltage co-axial cable creating a short. We lengthen it. I'd still line to find the original electrical cap connection, but it is working like a champ.

Thanks again for the ideas and information.

Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



________________________________
This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.


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From: eugenia.minikus-at-psi.ch
Date: Tue, 30 Aug 2011 07:28:42 -0500
Subject: [Microscopy] GATAN MSC 1k CCD camera + Oxford Instr Isis X-ray EDS electronic ~1998 to give

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello,

We have in our laboratory one old GATAN MSC 1kx1k CCD camera + Oxford
Instruments Isis X-ray EDS electronics (without the detector), both of
~1998, to donate. They were both used on a TEM JEOL 2010. They were in
good state and functioning when they were replaced some years ago. They
are at the Paul Scherrer Institute in Switzerland.
We donate them; shipping and handling to be paid.

Please contact me if you are interested.

Best wishes,


Minikus Eugenia

CRPP-EPFL/Fusion Technology

5232 Villigen PSI / Switzerland

Tel +41 56 310 47 07

Fax +41 56 310 45 29



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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 30 Aug 2011 16:36:58 -0500
Subject: [Microscopy] viaWWW:Job opening: EM academic (Assistant Prof/Associate Prof)

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Email: martin.saunders-at-uwa.edu.au Name: Martin Saunders

Organization: The University of Western Australia

Title-Subject: [Filtered] Job opening: EM academic (Assistant
Prof/Associate Prof)

Message: The Centre for Microscopy, Characterisaton and Analysis (CMCA)
at The University of Western Australia is seeking suitable applicants
for a tenurable academic position (Assistant Prof/Associate Prof) to
join the CentreÂ’s electron microscopy group, providing support to
researchers broadly across the physical sciences/materials science and
engineering disciplines (potentially in both SEM and TEM). A key role
will be to provide renewed academic leadership in the field of scanning
electron microscopy as a consequence of impending retirement.
The CMCA is a major central university facility that supports the
research-intensive role of the university, forming a nexus for
collaborative and interdisciplinary research linked to applications of
our extensive microscopy and microanalysis capabilities, which include
SEM, TEM, EPMA, ion probes, optical, confocal, flow cytometry, cell
sorting, XRD, NMR and mass spec.

The successful candidate will have a background in the application of
electron microscopy in the physical sciences. They will be expected to
lead SEM-related activity in the Centre, including the provision of
teaching/training, and driving future plans for SEM capabilities at the
university. They will be encouraged to develop their own research
programmes while also establishing collaborative and interdisciplinary
research activities with local researchers.

More information on this position can be found at
https://www.his.admin.uwa.edu.au/jobvacs/external/academic/doc/doc2123955.RTF

Queries can be directed to our Centre Director (Prof David Sampson,
david.sampson-at-uwa.edu.au) or myself (martin.saunders-at-uwa.edu.au).

Regards,

Martin.

*****************************************

Professor Martin Saunders,
Deputy Director,
Centre for Microscopy, Characterisation and Analysis,
M010,
The University of Western Australia,
Crawley,
Western Australia 6009,
Australia.

Phone: +61 8 6488 8092
Fax: +61 8 6488 1087
E-mail: Martin.Saunders-at-uwa.edu.au
CRICOS Provider No. 00126G

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 30 Aug 2011 16:37:32 -0500
Subject: [Microscopy] viaWWW:Histology textbook recommendation

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Email: jpflugheber-at-stlawu.edu Name: Jill Pflugheber

Organization: St. Lawrence University

Title-Subject: [Filtered] Histology textbook recommendation

Message: I'm beginning preparations for a new class, and I would like to
preview some histology textbooks. The class will be for undergraduates,
probably at the 200 level, and will be a combination of
histology/methods and microscopy. Does anyone have any favorites that
they would recommend I preview? Thanks very much.

Jill Pflugheber
St. Lawrence University

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From: malcolm.haswell-at-sunderland.ac.uk
Date: Wed, 31 Aug 2011 05:01:32 -0500
Subject: [Microscopy] viaWWW:Histology textbook recommendation

Contents Retrieved from Microscopy Listserver Archives
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Jill

One text we have used for years is:
Histology: A text and Atlas - Johannes A.G. Rhodin - Oxf Uni Press published 1974 - I'm not sure if it is still in print but used to be our "bible". Very good for routine TEM mammalian histology as a histology atlas.

There appears to be a web version of some of the pictures in an on-line text
http://projects.galter.northwestern.edu/rhodin/

Malcolm

Malcolm Haswell
Imaging Suite
Faculty of Applied Sciences
University of Sunderland
SUNDERLAND
SR1 3SD
UK
email: malcolm.haswell-at-sunderland.ac.uk

________________________________________
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Email: jpflugheber-at-stlawu.edu Name: Jill Pflugheber

Organization: St. Lawrence University

Title-Subject: [Filtered] Histology textbook recommendation

Message: I'm beginning preparations for a new class, and I would like to
preview some histology textbooks. The class will be for undergraduates,
probably at the 200 level, and will be a combination of
histology/methods and microscopy. Does anyone have any favorites that
they would recommend I preview? Thanks very much.

Jill Pflugheber
St. Lawrence University

Login Host: 69.6.104.239
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From: smithj-at-winthrop.edu
Date: Wed, 31 Aug 2011 10:11:00 -0500
Subject: [Microscopy] LKB ultratome V manual to give away

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Instruction manual, complete with cryokit manual and spare-parts
catalogue. Yours for the cost of postage.
Julian

--
Julian P.S. Smith III
Director, Winthrop Microscopy Facility
Dept. of Biology
Winthrop University
520 Cherry Rd.
Rock Hill, SC 29733

803-323-2111 x6427 (vox)
803-323-3448 (fax)
803-524-2347 (cell)
Research Website www.birdnest.org/smithj
Personal Website www.rociada-east.net


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 31 Aug 2011 16:25:57 -0500
Subject: [Microscopy] [Filtered] HEPA filter system for sputter coater

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi everyone,


My lab works with pharmaceutical powders and we almost always perform
some SEM on them. While the powders are technically stuck to the posts
with adhesive I assume some loose powder is sucked up through the vacuum
system while sputter coating. It appears to me that the sputter coater
has no filtration system of any kind and could technically vent any
powders back into the lab through the exhaust. It's an older Hummer 6.2
system (no digital display so I assume it's at least 10 years old), the
exhaust port we want to cover is 6inchesx6inches.


I'd like to put a HEPA filter on the exhaust port but I contacted
Anatech and they didn't know a supplier for a housing like this. Most
HEPA filter housings I'm finding online are way too large for the
exhaust port, has anyone does this? Did you make your own filter housing
or is there a supplier for this kind of thing?


Thanks,

Annie



Disclaimer - August 31, 2011 LEGAL NOTICE: This message (and/or any
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intended for the addressee(s) only. Access to this e-mail by anyone
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 31 Aug 2011 16:28:13 -0500
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:

Contents Retrieved from Microscopy Listserver Archives
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Email: prlax-at-mindspring.com Name: David OHara

Organization: Parallax Research, Inc.

Title-Subject: [Filtered] WDS capabilities

Message: First, I want to thank Dr Peter Ingram for reminding me of this
listServer.
Next, my primary interest is in developing new WDS type instrumentation
so I like to see questions concerning WDS and things it can do and
potential applications. For example, there was a thread a couple of
months ago concerning measuring Na and Zn and someone asked if WDS could
resolve this overlap. The answer is "Yes" if the right diffractor is
used (TAP will work but the multilayer diffractors will still give an
overlap)
Not being an EM trained person, the needs for WDS are often not obvious
to me so this forum will be especially valueable.
So I have a few questions for EM users:
1: Is anybody interested in measuring Li in their SEM?
2: I was told by somebody that the Li line at 52 eV was due to a
"forbidden" transition so we would never see it....correct?
3: Why do I never hear about WDS on TEMs?

Thank You,

David OHara


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From: vray-at-partbeamsystech.com
Date: Wed, 31 Aug 2011 17:06:59 -0500
Subject: [Microscopy] Re: [Filtered] HEPA filter system for sputter coater

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Annie,

Somewhere inside of the sputter coater is a roughing pump with the
exhaust port that is significantly smaller then 6"x6" - in fact it may
be small enough to connect a PVC hose of a suitable diameter. If you
have difficulty locating pump exhaust port then try to speak with
someone who services it. First page of Google search had link to Ladd
Research in VT - these guys are still selling Hummer 6.2 coaters and I
know them as very responsive and helpful. No any connections here - just
a satisfied customer.

The ideal approach would be to connect a (clear PVC?) hose to the
exhaust port of the rouging pump in your coater and route it into the
safety exhaust of your lab. If you do not have safety exhaust in the
lab, then get a couple of filter housings for the water supply lines, of
the kind sold for whole-house water filtration (Home Depot or online),
connect them in series and fit first one with 1um filter cartridge and
second with activated charcoal filter cartridge. These water filters
have very low flow resistance, so pumping efficiency of your coater will
not be affected. After 1um followed by charcoal your air exhaust should
be much cleaner then it is now...

If you do not want to mess with plumbing and insist on covering 6"x6"
vent port of the sputter coater enclosure, then it is very easy to make
HEPA filters of custom size.

Simply buy larger HEPA filter of your liking, cut it to size with
scissors, glue solid edge around its perimeter (I like to use
waterproofing Al tape from 3M - its glue remains tacky for years) and
seal border to the filter with silicone caulk to prevent air from
filtering around. My laminar flow hood is using non-standard filters, so
I am going through filter-trimming exercise every 6 months to one year,
depending on usage. After some practice it takes about 15 minutes of
work to get perfect filter of a custom size. Stick your DIY filter to
the coater with solid perimeter of double-sided tape and secure with Al
tape for safety. If you are careful then it may even look pretty...

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 8/31/2011 5:26 PM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Hi everyone,
}
}
} My lab works with pharmaceutical powders and we almost always perform
} some SEM on them. While the powders are technically stuck to the posts
} with adhesive I assume some loose powder is sucked up through the vacuum
} system while sputter coating. It appears to me that the sputter coater
} has no filtration system of any kind and could technically vent any
} powders back into the lab through the exhaust. It's an older Hummer 6.2
} system (no digital display so I assume it's at least 10 years old), the
} exhaust port we want to cover is 6inchesx6inches.
}
}
} I'd like to put a HEPA filter on the exhaust port but I contacted
} Anatech and they didn't know a supplier for a housing like this. Most
} HEPA filter housings I'm finding online are way too large for the
} exhaust port, has anyone does this? Did you make your own filter housing
} or is there a supplier for this kind of thing?
}
}
} Thanks,
}
} Annie
}
}
}
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From: Naomi_McCallum-at-health.qld.gov.au
Date: Wed, 31 Aug 2011 18:49:40 -0500
Subject: [Microscopy] Re: viaWWW:Histology textbook recommendation

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Jill

http://www.nsh.org/content/textbooks-and-manuals

Here is a link to look at, we use Bancroft and one of my colleagues purchased the flash cards as a useful tool for the lab. There is nothing like a good colour image to compare with.

Hope this helps,
Naomi McCallum

Pathology Queensland, Australia.

} } } {microscopylistserver-noreply-at-microscopy.com} 8/31/2011 7:48 am } } }



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Email: jpflugheber-at-stlawu.edu Name: Jill Pflugheber

Organization: St. Lawrence University

Title-Subject: [Filtered] Histology textbook recommendation

Message: I'm beginning preparations for a new class, and I would like to
preview some histology textbooks. The class will be for undergraduates,
probably at the 200 level, and will be a combination of
histology/methods and microscopy. Does anyone have any favorites that
they would recommend I preview? Thanks very much.

Jill Pflugheber
St. Lawrence University

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From: mmcheath-at-syr.edu
Date: Thu, 1 Sep 2011 06:19:54 -0500
Subject: [Microscopy] [Filtered] HEPA filter system for sputter

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Annie and Valery,

If your coater uses a rotary vane oil rough pump, those powders shouldn't
be making it out of the exhaust of the pump. They should be trapped in
the oil. If the rough pump is a dry pump then the particles are probably
being exhausted.

If you really want to trap the particles upstream of the rough pump with a
HEPA try Flanders (http://www.flanderscorp.com). I believe they make
custom sizes.

Mike


********************************************************************
Michael M. Cheatham
321 Heroy Geology Laboratory Phone (315)-443-1261
Syracuse University Fax
(315)-443-3363
Syracuse, NY 13244-1070

email:mmcheath-at-syr.edu
http://earthsciences.syr.edu

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On 8/31/11 6:13 PM, "vray-at-partbeamsystech.com" {vray-at-partbeamsystech.com}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 1 Sep 2011 09:02:25 -0500
Subject: [Microscopy] viaWWW: Tantalum electropolishing

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Email: dam-at-fzu.cz Name: Karel Dám

Title-Subject: [Filtered] Tantalum electropolishing

Message: Dear listers,

I would like to prepare TEM samples from almost pure tantalum by
electropolishing but I´m not sure about the conditions. I have found
someone used an electrolyte of sulphupic (5%) and hydrofluoric (2%) acid
in methanol. Does anyone have experience with this material? What
electrolyte composition, voltage, sample thickness and temperature do
you use?

Any help will be very appreciated.
Thanks
regards

Karel

Karel Dám, MSc
Department of Physics AS CR, v. v. i.
Na Slovance 2
CZ-182 21 Prague 8
Czech Republic
Email: dam-at-fzu.cz

Login Host: 147.231.26.31
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From: FMonson-at-wcupa.edu
Date: Thu, 1 Sep 2011 09:02:46 -0500
Subject: [Microscopy] RE: [Filtered] HEPA filter system for sputter coater

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http://www.hi-q.net/products/filter-media-for-air-samplers/filter-paper-glass-fiber-cellulous-carbon-impregnated/default.html

http://www.hepa.com/products.asp

Hi Annie,

Please think about what you are requesting - and why.
1. I assume you get a vial of produict, or a bag, or a wheelbarrow - nonetheless, much more than you need to study particles or to do EDS/WDS/XRD etc. Where do you do your specimen prep? Lab bench? Hood? Hood with HEPA filter in exhaust? Glove bag? What are the dimensions of the specimen particles? Viruses are relatively large and HEPA filters are designed to safeguard us from pathogens and allergens. The HEPA standard: http://en.wikipedia.org/wiki/HEPA, as explained in Wikipedia helps us to understand the characteristics of the HEPA filtration systems which we might consider during our search and to increase the chance that we will get what we REALLY want. However, the acid test is whether we KNOW the properties of the smallest particles we must trap and what hazard they present.
2. Why are you worried about your sputter coater? The great majority of particles will be trapped in the oil of your vacuum pump - sputter coater, (E)SEM and little will get by the mist filter on the pump. If you are using a dry pump, then, are you worried about contaminating subsequent specimens, the chamber of the coater, or the room?

The two links at the top of the page should direct you in the right direction for HEPA filter consumables and systems. Remember, you can insert a 'filter' for almost anything between the chamber and the pump, but will you still be able to pull the vacuum with your current vacuum pump?

As is almost always the case with microscopy, we must adapt a little or adapt a lot, and most of us have to learn where and when we stop considering cost as a limitation.

In woodworking, for example, if you have a child who is about to take wood shop, wouldn't you like to know about this: http://www.sawstop.com/?gclid=CK-3zMOZ_KoCFQ0BQAod-UZo2g?

Hope this helps,

Fred Monson
http://cmirt.wcupa.edu
CMIRT, West Chester University of Pennsylvania
West Chester, PA, 19383
610-738-0437
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Hi everyone,


My lab works with pharmaceutical powders and we almost always perform
some SEM on them. While the powders are technically stuck to the posts
with adhesive I assume some loose powder is sucked up through the vacuum
system while sputter coating. It appears to me that the sputter coater
has no filtration system of any kind and could technically vent any
powders back into the lab through the exhaust. It's an older Hummer 6.2
system (no digital display so I assume it's at least 10 years old), the
exhaust port we want to cover is 6inchesx6inches.


I'd like to put a HEPA filter on the exhaust port but I contacted
Anatech and they didn't know a supplier for a housing like this. Most
HEPA filter housings I'm finding online are way too large for the
exhaust port, has anyone does this? Did you make your own filter housing
or is there a supplier for this kind of thing?


Thanks,

Annie



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From: microwink-at-gmail.com
Date: Thu, 1 Sep 2011 09:53:04 -0500
Subject: [Microscopy] Re: viaWWW: Tantalum electropolishing

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Hi Karel,

Recipes for electropolishing tantalum from Electron Microscopy of Thin
Crystals by PB Hirsch et al.:

1) Electrolyte: 10% HF (40% concentration) in 90% sulphuric acid.
Voltage: 12-20V
Current Density: 1-2 A/cm2
Temperature: room temp.
Pt or C cathode

2) Electrolyte: 5% sulphuric acid, 1.25% HF (40% concentration), and
93.75% methanol.
Voltage: 50-70V
Current Density: 4.4 A/cm2
Temperature: 0C (ice water bath)
Pt or C cathode

Similar recipes for electropolishing Ta from Practical Electron
Microscopy in Materials Science by KC Thompson-Russell and JW
Edington:

3) Electrolyte: 600ml methanol, 30ml sulphuric acid, and 7.5ml HF.
Voltage: 20V
Current Density: 26-28 A/cm2 (seems very high--be careful)
Temperature: room temp.
wash in ethanol

4) Electrolyte: 90% sulphuric acid and 10% HF.
Voltage: 14V
Current Density: 0.1-0.2 A/cm2
Temperature: room temp.
Pt cathode only
wash in water

Make sure you have a fresh supply of calcium gluconate gel on hand
when working with HF-based electrolytes!

Good luck,
Chris

On Thu, Sep 1, 2011 at 10:11 AM,
{microscopylistserver-noreply-at-microscopy.com} wrote:
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} Title-Subject: [Filtered] Tantalum electropolishing
}
} Message: Dear listers,
}
} I would like to prepare TEM samples from almost pure tantalum by
} electropolishing but I´m not sure about the conditions. I have found
} someone used an electrolyte of sulphupic (5%) and hydrofluoric (2%) acid
} in methanol. Does anyone have experience with this material? What
} electrolyte composition, voltage, sample thickness and temperature do
} you use?
}
} Any help will be very appreciated.
} Thanks
} regards
}
} Karel
}
} Karel Dám, MSc
} Department of Physics AS CR,  v. v. i.
} Na Slovance 2
} CZ-182 21 Prague 8
} Czech Republic
} Email: dam-at-fzu.cz
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--
Christopher Winkler
Dynamic Characterization Group
http://www.materials.drexel.edu/dcg/
Drexel University
267-496-0587


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From: NEERAJG-at-clemson.edu
Date: Thu, 1 Sep 2011 10:03:24 -0500
Subject: [Microscopy] Re: Chitnisase digestion of cuticle

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Dear list,

Does anyone have a good protocol or know a reference for digesting arthropod cuticle with chitinase?

Thanks,

Neeraj.

Neeraj V. Gohad, Ph.D.
Research Assistant Professor
Department of Biological Sciences
132 Long Hall
Clemson University
Clemson,SC-29634
Phone: 864-656-3597
Fax: 864-656-0435



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From: malcolm.haswell-at-sunderland.ac.uk
Date: Thu, 1 Sep 2011 10:20:24 -0500
Subject: [Microscopy] RE: [Filtered] HEPA filter system for sputter coater

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Annie

we normally use a light puff of air from a simple dust-off (air blower) to make sure there are no loose particles on our SEM stubs once they are stuck to the stub. If the samples are hazardous this would be done inside of an enclosure such as a fume hood or other extraction system. This would perhaps need more regular cleaning if you prepared many samples.

It would be relatively simple to trap most particles by partially enclosing the process or alternatively remove loose particles with a HEPA filtered vacuum cleaner.

Malcolm

Malcolm Haswell
Imaging Suite
Faculty of Applied Sciences
University of Sunderland
SUNDERLAND
SR1 3SD
UK
email: malcolm.haswell-at-sunderland.ac.uk

________________________________________
X-from: FMonson-at-wcupa.edu [FMonson-at-wcupa.edu]
Sent: 01 September 2011 15:15
To: Malcolm Haswell

http://www.hi-q.net/products/filter-media-for-air-samplers/filter-paper-glass-fiber-cellulous-carbon-impregnated/default.html

http://www.hepa.com/products.asp

Hi Annie,

Please think about what you are requesting - and why.
1. I assume you get a vial of produict, or a bag, or a wheelbarrow - nonetheless, much more than you need to study particles or to do EDS/WDS/XRD etc. Where do you do your specimen prep? Lab bench? Hood? Hood with HEPA filter in exhaust? Glove bag? What are the dimensions of the specimen particles? Viruses are relatively large and HEPA filters are designed to safeguard us from pathogens and allergens. The HEPA standard: http://en.wikipedia.org/wiki/HEPA, as explained in Wikipedia helps us to understand the characteristics of the HEPA filtration systems which we might consider during our search and to increase the chance that we will get what we REALLY want. However, the acid test is whether we KNOW the properties of the smallest particles we must trap and what hazard they present.
2. Why are you worried about your sputter coater? The great majority of particles will be trapped in the oil of your vacuum pump - sputter coater, (E)SEM and little will get by the mist filter on the pump. If you are using a dry pump, then, are you worried about contaminating subsequent specimens, the chamber of the coater, or the room?

The two links at the top of the page should direct you in the right direction for HEPA filter consumables and systems. Remember, you can insert a 'filter' for almost anything between the chamber and the pump, but will you still be able to pull the vacuum with your current vacuum pump?

As is almost always the case with microscopy, we must adapt a little or adapt a lot, and most of us have to learn where and when we stop considering cost as a limitation.

In woodworking, for example, if you have a child who is about to take wood shop, wouldn't you like to know about this: http://www.sawstop.com/?gclid=CK-3zMOZ_KoCFQ0BQAod-UZo2g?

Hope this helps,

Fred Monson
http://cmirt.wcupa.edu
CMIRT, West Chester University of Pennsylvania
West Chester, PA, 19383
610-738-0437
________________________________________


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Hi everyone,


My lab works with pharmaceutical powders and we almost always perform
some SEM on them. While the powders are technically stuck to the posts
with adhesive I assume some loose powder is sucked up through the vacuum
system while sputter coating. It appears to me that the sputter coater
has no filtration system of any kind and could technically vent any
powders back into the lab through the exhaust. It's an older Hummer 6.2
system (no digital display so I assume it's at least 10 years old), the
exhaust port we want to cover is 6inchesx6inches.


I'd like to put a HEPA filter on the exhaust port but I contacted
Anatech and they didn't know a supplier for a housing like this. Most
HEPA filter housings I'm finding online are way too large for the
exhaust port, has anyone does this? Did you make your own filter housing
or is there a supplier for this kind of thing?


Thanks,

Annie



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 1 Sep 2011 11:30:29 -0500
Subject: [Microscopy] viaWWW:JEOL JBX-5DII lithography systems

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Email: jjmccarthy-at-wisc.edu Name: Jon McCarthy

Organization: College of Engineering: UW Madison

Title-Subject: [Filtered] JEOL JBX-5DII lithography systems

Message: We have two 1995 vintage JBX instruments we wish to fiind a
home for. On system is used for parts to support the other. Neither
system has a warking computer, but we are getting a quote for a working
VAX for the system that was useable before shutdown in 2010.

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would be through the UW SWAP oranganization.

Contact;
Jon J McCarthy, Ph.D. Director, Shared Instrument Facilities
Co-Director Advance Materials Industrial Consortium
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jjmccarthy-at-wisc.edu


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From: Annie.Muske-Dukes-Driggs-at-bendresearch.com
Date: Thu, 1 Sep 2011 12:26:53 -0500
Subject: RE: [Microscopy] [Filtered] HEPA filter system for sputter coater

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Thank you for the responses, everyone!

For a bit of background: prepping samples in my lab almost always requires a respirator/filtered mask or in rare cases a suit with its own air supply and anyone else in the room has to wear a mask while sample prep is going on. The procedure has been to prep samples the in a HEPA lab hood with a mask and transfer them to the sputter coater (which is just on a bench and not in a hood). As soon as the posts are in the sputter coater people considered samples contained and would remove their masks. We also consider the samples contained after coating so people do not wear masks to transfer samples to the SEM or for imaging.

During a safety check of the lab the officers were concerned that over the years powder has been blown back into the lab and since I wasn't able to show them any filter system they wanted me to look into adding one. The particles in the samples vary in size from {10µm to } 200µm, I will look into the oil filters and find out if they catch something of that size. If not you have all given me a lot of options.

Thanks again,
Annie

-----Original Message-----
X-from: Monson, Frederick [mailto:FMonson-at-wcupa.edu]
Sent: Thursday, September 01, 2011 7:03 AM
To: microscopy-at-microscopy.com
Cc: Muske-Dukes-Driggs, Annie

Hi everyone,


My lab works with pharmaceutical powders and we almost always perform
some SEM on them. While the powders are technically stuck to the posts
with adhesive I assume some loose powder is sucked up through the vacuum
system while sputter coating. It appears to me that the sputter coater
has no filtration system of any kind and could technically vent any
powders back into the lab through the exhaust. It's an older Hummer 6.2
system (no digital display so I assume it's at least 10 years old), the
exhaust port we want to cover is 6inchesx6inches.


I'd like to put a HEPA filter on the exhaust port but I contacted
Anatech and they didn't know a supplier for a housing like this. Most
HEPA filter housings I'm finding online are way too large for the
exhaust port, has anyone does this? Did you make your own filter housing
or is there a supplier for this kind of thing?


Thanks,

Annie



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From: John.Mardinly-at-asu.edu
Date: Thu, 1 Sep 2011 13:58:28 -0500
Subject: [Microscopy] Re: [Filtered] MicroscopyListserverviaWWW:

Contents Retrieved from Microscopy Listserver Archives
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Back in the late 60's a British company called AEI manufactured a TEM with two WDS spectrometers. It was called EMMA-4. It was not a huge commercial success, and no one has tried to make a microscope like that since.

John Mardinly
ASU
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} Email: prlax-at-mindspring.com Name: David OHara
}
} Organization: Parallax Research, Inc.
}
} Title-Subject: [Filtered] WDS capabilities
}
} Message: First, I want to thank Dr Peter Ingram for reminding me of this
} listServer.
} Next, my primary interest is in developing new WDS type instrumentation
} so I like to see questions concerning WDS and things it can do and
} potential applications. For example, there was a thread a couple of
} months ago concerning measuring Na and Zn and someone asked if WDS could
} resolve this overlap. The answer is "Yes" if the right diffractor is
} used (TAP will work but the multilayer diffractors will still give an
} overlap)
} Not being an EM trained person, the needs for WDS are often not obvious
} to me so this forum will be especially valueable.
} So I have a few questions for EM users:
} 1: Is anybody interested in measuring Li in their SEM?
} 2: I was told by somebody that the Li line at 52 eV was due to a
} "forbidden" transition so we would never see it....correct?
} 3: Why do I never hear about WDS on TEMs?
}
} Thank You,
}
} David OHara
}
}
} Login Host: 68.35.253.50
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From: schenderson-at-vcu.edu
Date: Thu, 1 Sep 2011 15:26:56 -0500
Subject: [Microscopy] Microscopy Technician position available

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Microscopy Technician

A technical position is available in the Microscopy Facility of the
Department of Anatomy and Neurobiology in the School of Medicine at Virginia
Commonwealth University. The facility houses confocal, multi-photon, TIRF,
atomic force, and electron microscopes (TEM & SEM). The successful
candidate will assist with microscopy studies of various biological systems.
Duties include assisting users of the facility, providing basic instruction
in the use of equipment within the facility (i.e. microscopes, microtomes,
and image analysis programs), sample preparation, minor equipment
maintenance and some administrative work (ordering of supplies and monthly
billing). Applicants should have excellent communication and organizational
skills, an understanding of laboratory procedures, and the ability to manage
a large and varied workload. Minimum qualifications include a bachelor’s
degree in Science (with a concentration in Biology), at least 2 years of
hands-on experience with advanced light microscopy (e.g. confocal), electron
microscopy, sample preparation (including sectioning), and image analysis.
Computer skills are essential.

To apply, go to the VCU Jobs website at: https://www.vcujobs.com/

Click the Search Postings link in the upper left corner of the window. The
position number is 551220.

--------------------------

Scott Henderson, Ph.D.
Director of Microscopy
Associate Professor
Dept. Anatomy & Neurobiology
Virginia Commonwealth University
School of Medicine
1101 East Marshall St.
Richmond, VA  23298-0709




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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 1 Sep 2011 16:21:27 -0500
Subject: [Microscopy] viaWWW:Surplus: carbon coater and X-ray generator

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Email: ekoh-at-udel.edu Name: Ed Kohut

Organization: Dept. of Geological Sciences, University of Delaware

Title-Subject: [Filtered] Surplus: carbon coater and X-ray generator

Message: The UD Dept. of Geosciences is surplusing their remaining
mineralogical analytical equipment. The following items are available:
Denton DV-502 Carbon Coater

Phillips PW1729 X-Ray Generator (no tube or tower)

If interested please contact Bill Parnella at parnella-at-udel.edu or
302-831-3156

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 1 Sep 2011 16:21:55 -0500
Subject: [Microscopy] viaWWW:Measuring Aragonite/Calcite ratios

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Email: deanr-at-dickinson.edu Name: Robert Dean

Organization: Dickinson College

Title-Subject: [Filtered] Measuring Aragonite/Calcite ratios

Message: I have some small corals from a colleague who is interested in
seasonal variations of Arg/Cal. Any ideas on how to measure
Aragonite/Calcite ratios on a sample powder where there isn't enough
material for XRD?


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From: lherault-at-bu.edu
Date: Thu, 1 Sep 2011 20:04:26 -0500
Subject: [Microscopy] [Filtered] HEPA filter system for sputter coater

Contents Retrieved from Microscopy Listserver Archives
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Hello Robert,

That sounds like a very small amount of powder. You might look into analyzing it with FTIR since there is a difference between the spectra. Good luck!

Diane Ciaburri


-----Original Message-----
X-from: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Thursday, September 01, 2011 5:22 PM
To: Ciaburri, Diane A.

If powders were sucked away, wouldn't they just go into the oil of the
vacuum pump?

Ron L

-----Original Message-----
X-from: microscopylistserver-noreply-at-microscopy.com
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Sent: Wednesday, August 31, 2011 5:29 PM
To: lherault-at-bu.edu

Hi everyone,


My lab works with pharmaceutical powders and we almost always perform
some SEM on them. While the powders are technically stuck to the posts
with adhesive I assume some loose powder is sucked up through the vacuum
system while sputter coating. It appears to me that the sputter coater
has no filtration system of any kind and could technically vent any
powders back into the lab through the exhaust. It's an older Hummer 6.2
system (no digital display so I assume it's at least 10 years old), the
exhaust port we want to cover is 6inchesx6inches.


I'd like to put a HEPA filter on the exhaust port but I contacted
Anatech and they didn't know a supplier for a housing like this. Most
HEPA filter housings I'm finding online are way too large for the
exhaust port, has anyone does this? Did you make your own filter housing
or is there a supplier for this kind of thing?


Thanks,

Annie



Disclaimer - August 31, 2011 LEGAL NOTICE: This message (and/or any
attachments accompanying it) is confidential and proprietary. It is
intended for the addressee(s) only. Access to this e-mail by anyone
else is unauthorized. If you are not an addressee any disclosure,
copying, or distribution of the contents of this e-mail (and any
attachments) or any action taken (or not taken) in reliance upon this
message is unauthorized and may be unlawful. If you are not an
addressee, please contact the sender immediately by calling Bend
Research Inc (541) 382-4100.


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From: marshall-at-sfu.ca
Date: Thu, 1 Sep 2011 22:22:52 -0500
Subject: [Microscopy] Re: viaWWW:Measuring Aragonite/Calcite ratios

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

You could try Raman.
There are some low wave number peaks that you can use to distinguish
between the two polymorphs.
Sometime fluorescence is a problem, but you might get lucky.
You'd also have to make up some powders of known ratios to use as
calibration standards, but after that the actual time for each Raman
analysis would be less than a minute.
Dan



At 02:30 PM 01/09/2011, you wrote:



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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 4 Sep 2011 09:26:38 -0500
Subject: [Microscopy] viaWWW:emission current problem EPMA SX100

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Email: arturr.irani-at-yahoo.com Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] emission current problem

Message: Hi all

Increasing heat make to increase Emission current in EPMA SX100. for instance we set Hv in 15 Kev,
heat 198 and Emission current to 80 but when we clicking to preview other number are shown specially
EMI current increasing to 426 and at the end we couldn't set up the calibration. why it is
happening? also during set up calibration, there is errors like this: error from gun current.

also which problems may effect the gun current and emission current and which aleged to considering
part?

I need more urgent help.please every one know them guide me.

best regards

Araz

Login Host: 94.183.106.107
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 4 Sep 2011 09:27:04 -0500
Subject: [Microscopy] [Filtered] Re: viaWWW: Tantalum electropolishing

Contents Retrieved from Microscopy Listserver Archives
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Dear Lister

Hydrofluoric acid is a very hazardous material. I am a chemist and I avoid
using it wherever possible. You can not use it in a regular jet polishing
system, such as a Struers Tenupol, as the acid will etch the windows of the
light sensor.
I have no direct experience with Ta. However, a universal electropolishing
solution which I have used on literally dozens of metals, is 4% HClO4 in
methanol at -40°C, using about 120-160mA (for double sided polishing). This
includes stainless steels, superalloys, Al and Mg alloys, cast iron, copper
alloys, rare earth metals, metallic glasses etc.

HClO4 (perchloric acid) has its own hazards, but I would use it over HF any
day.
I can't guarantee that it will work with Ta, but if it was me, I'd be trying
it. The HF-containing solutions would be the last resort.

Regards,

Dave Mitchell




On 2/09/11 12:13 AM, "microscopylistserver-noreply-at-microscopy.com"
{microscopylistserver-noreply-at-microscopy.com} wrote:

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} Email: dam-at-fzu.cz Name: Karel Dám
}
} Title-Subject: [Filtered] Tantalum electropolishing
}
} Message: Dear listers,
}
} I would like to prepare TEM samples from almost pure tantalum by
} electropolishing but I´m not sure about the conditions. I have found
} someone used an electrolyte of sulphupic (5%) and hydrofluoric (2%) acid
} in methanol. Does anyone have experience with this material? What
} electrolyte composition, voltage, sample thickness and temperature do
} you use?
}
} Any help will be very appreciated.
} Thanks
} regards
}
} Karel
}
} Karel Dám, MSc
} Department of Physics AS CR, v. v. i.
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From: lisa-at-glosuntech.com
Date: Mon, 5 Sep 2011 23:36:48 -0500
Subject: [Microscopy] Denton 502 needed

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Dear members,

Our company is looking for an used good working condition Denton 502. If you happen to have one, please let me know. Thanks.


Regards,

Lisa
Glosuntech LLC

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From: FMonson-at-wcupa.edu
Date: Tue, 6 Sep 2011 10:35:30 -0500
Subject: [Microscopy] JEOL T220 Parts

Contents Retrieved from Microscopy Listserver Archives
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Morning All,

Sometime ago, we salvaged a JEOL T220A SEM. In the process, we set the column aside for demonstrations, and the removable parts in a box as used parts - should anyone ever ask.

The URL with the link to a list of those parts is: http://cmirt.wcupa.edu/CMIRT_JEOL_T220_Parts.html (Please disregard any mention of cost other than shipping.)

I will be 'discarding' the lot (except the column) in two weeks - that is, on 22 September, 2011.

Cheers,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl
=========================================================================
Abraham Lincoln was perhaps the greatest orator the United States has known since the days of the Founders. Read what he said, then, think and learn.
http://showcase.netins.net/web/creative/lincoln/speeches/lyceum.htm
And, what's a lyceum?
http://dig.lib.niu.edu/ISHS/ishs-1990spring/ishs-1990spring45.pdf
=========================================================================
History is Cyclic. Only the ism's, nouns or adjectives change, AND......, When the objective classroom turns to agenda, history repeats!
=========================================================================
"Pan-Germanism was an achievement of intellectuals and writers. The professors of history, law, economics, political science, geography, and philosophy were its most uncompromising advocates. They converted the students of the universities to their ideas. Very soon the graduates made more converts. As teachers in the field of higher education (in the famous German Gymnasium and educational institutions of the same rank), as lawyers, judges, civil servants, and diplomats they had ample opportunity to serve their cause."

""Soap capital" desires more cleanliness, "building capital" a greater demand for homes, "publishing capital" more and better education, and "armaments capital" bigger armaments. The shortrun interests of every branch of business encourage such attitudes. In the long run, however, increased demand results in an inflow of more capital into the booming branch, and the competition of the new enterprises cuts down the profits."
Ludwig von Mises (http://www.mises.org/etexts/mises/og/chap6.asp)
=========================================================================
Thus, the wise state, looking for the best result, will support research in those endeavors that promise improvements in the 'general welfare'. The 'wise state' will know that one cannot order up the solution to any problem by treating the process of innovation as little more than magic. The 'unwise state' will create chaos. (FCM, 2011)
=========================================================================




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From: WHITTAKS-at-si.edu
Date: Tue, 6 Sep 2011 14:59:57 -0500
Subject: [Microscopy] Position Announcement- Analytical EM - Was. DC

Contents Retrieved from Microscopy Listserver Archives
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The following position has just been posted for the National Museum of Natural History.

Please do not reply to this message- rather contact Tim Rose (roset-at-si.edu) for further information.

{} {} {} } {} {} Begin Message {} {} {} {} {} {}

Position Opening: Museum Specialist (Geology)

The Department of Mineral Sciences at the National Museum of Natural History in Washington, D.C. has a position opening in our analytical laboratories. We are seeking a person to assist a small group of full time researchers engaged in the study of meteorites, mineralogy, volcanology, igneous and metamorphic petrology, experimental petrology and biomineralogy.
The duties of this position include sample preparation, fabrication of custom-designed parts and sample holders and assistance in the Analytical Scanning Electron Microscope and Electron Microprobe Laboratories. Preparation of thin sections and polished mounts of a wide variety of materials including Antarctic meteorites, rocks and experimental products is an essential part of this position. The position also includes basic machining and fabrication of parts from a variety of materials for use in the analytical and experimental laboratories. In addition, this person will serve in a backup role in our electron beam laboratories assisting users and troubleshooting hardware and software issues.
We are looking for self-motivated applicants with a background in geologic sciences and the ability to work well in an exciting workplace with many challenges. All applicants must apply online at the USAJOBS website. No other applications can be accepted.
To apply please go to (open to the public):

http://jobview.usajobs.gov/GetJob.aspx?JobID=102153641&JobTitle=Museum+Specialist+(Geology)&brd=3876&vw=b&FedEmp=N&FedPub=Y&x=78&y=15&jbf574=SM03&AVSDM=2011-09-02+00%3a03%3a00

Or for persons with status (current or former Federal employees):

http://jobview.usajobs.gov/GetJob.aspx?JobID=102153593&JobTitle=Museum+Specialist+(Geology)&brd=3876&vw=b&FedEmp=Y&FedPub=Y&x=78&y=15&jbf574=SM03&pg=2&re=3&AVSDM=2011-09-02+00%3a03%3a00

Visit our website for more information about us: http://mineralsciences.si.edu/ or contact Tim Rose (roset-at-si.edu), Analytical Laboratories Manager


{} {} {} } {} {} End Message {} {} {} {} {} {}

Scott Whittaker
Chief NMNH Imaging
Manager SEM Lab
Smithsonian Institution
National Museum of Natural History
PO Box 37012   MRC104
Washington DC 20013-7012
202-633-0891




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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 6 Sep 2011 19:36:34 -0500
Subject: [Microscopy] viaWWW:emission current problem EPMA SX100

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Araz,
I'm not familiar with your particular system, but since I haven't seen any
replies, I'll give it a shot.

The first thing I would do is check to see if any tungsten whiskers have
grown that are shorting the wehnelt to the filament (cathode), assuming you
are running a tungsten filament. Cleaning will take care of that problem,
if that is the problem.

If that is not the problem, then there is probably some kind of problem in
the bias resistance circuit. It could be a shorted resistor or capacitor in
the HV tank or it could be a problem with any automated bias control circuit
that might exist. The problem could be located in the HV area or it could
be low voltage control circuitry located elsewhere. There is also the
possibility of a software glitch. You probably need to contact Cameca for
more specific information.

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz

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Email: arturr.irani-at-yahoo.com Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] emission current problem

Message: Hi all

Increasing heat make to increase Emission current in EPMA SX100. for
instance we set Hv in 15 Kev, heat 198 and Emission current to 80 but when we clicking to preview other
number are shown specially EMI current increasing to 426 and at the end we couldn't set up the
calibration. why it is happening? also during set up calibration, there is errors like this: error
from gun current.

also which problems may effect the gun current and emission current and
which aleged to considering part?

I need more urgent help.please every one know them guide me.

best regards

Araz

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 6 Sep 2011 19:37:22 -0500
Subject: [Microscopy] viaWWW:CT Scanner

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Email: jacqueline.ayotte-at-ticona.com Name: Jackie Ayotte

Organization: Ticona Engineering Polymers

Title-Subject: [Filtered] CT Scanner

Message: Dear Listers,

I am looking to purchase a CT Scanner in order to view voids in plastic parts and possibly glass
fiber orientation in parts without destroying the parts.

If anyone has a CT Scanner and is using it for similar purposes, I would be interested in knowing if
you are happy with the equipment and software. If so, I'd like to know who the manufacturer of the
equipment is and what make and model you have (if you can share this information).

My company is located in northern KY, USA - I hope to meet with a local sales representative.
Thank you for your help.

Best Regards
Jackie Ayotte
Analytical Microscopist / Spectroscopist

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 7 Sep 2011 08:18:19 -0500
Subject: [Microscopy] viaWWW:LM: Looking for Refurbished light microscopy instrumentation

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Email: l.kastrup-at-abberior.com Name: Lars Kastrup

Organization: Abberior GmbH

Title-Subject: [Filtered] LM: Refurbished light microscopy instrumentation

Message: Can anyone recommend a web site which is selling refurbished microscopy instrumentation
(epifluorescence microscopes, maybe confocal...)?

Best regards
Lars

---
Dr. Lars Kastrup
Abberior GmbH
Hans-Adolf-Krebs-Weg 1
37077 Göttingen
Germany
E-Mail: l.kastrup-at-abberior.com


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From: Nicola.Weston-at-nottingham.ac.uk
Date: Wed, 7 Sep 2011 08:39:34 -0500
Subject: [Microscopy] Ultramicrotomy of Mg particles

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Dear listers
Does anyone have experience of embedding and sectioning Mg particles. The particles have a very thin (a few nm) outer layer of Ti and the researcher needs to examine in TEM. He has embedded some particles and I have attempted to cut sections but the sperical particles roll up as the sections cut leaving holes in the sections. I think the particles are too densely packed in the block so there is little resin support around the spheres. Any tips on the best resin and cutting parameters to use would be very much appreciated before I get too frustrated!!
Best wishes all
Nicola WestonThis message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham.

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From: John.Mardinly-at-asu.edu
Date: Wed, 7 Sep 2011 16:24:32 -0500
Subject: [Microscopy] Re: Ultramicrotomy of Mg particles

Contents Retrieved from Microscopy Listserver Archives
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I tried microtoming a variety of aluminum alloy particles years ago and succeeded mostly in making aluminum nano-potato chips. A better bet would be to try a FIB on the embedded composite, or, depending on the size of the particles, it may even be possibly to lift out sections of single particles.

John Mardinly
ASU


On Sep 7, 2011, at 6:48 AM, "Nicola.Weston-at-nottingham.ac.uk" {Nicola.Weston-at-nottingham.ac.uk} wrote:

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} Dear listers
} Does anyone have experience of embedding and sectioning Mg particles. The particles have a very thin (a few nm) outer layer of Ti and the researcher needs to examine in TEM. He has embedded some particles and I have attempted to cut sections but the sperical particles roll up as the sections cut leaving holes in the sections. I think the particles are too densely packed in the block so there is little resin support around the spheres. Any tips on the best resin and cutting parameters to use would be very much appreciated before I get too frustrated!!
} Best wishes all
} Nicola WestonThis message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham.
}
} This message has been checked for viruses but the contents of an attachment
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} University of Nottingham may be monitored as permitted by UK legislation.
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 7 Sep 2011 17:50:10 -0500
Subject: [Microscopy] viaWWW:Cryo FIB-SEM Workshop 9/27/11

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Email: mlibera-at-stevens.edu Name: Matthew Libera

Organization: Stevens Institute of Technology

Title-Subject: [Filtered] Cryo FIB-SEM Workshop 9/27/11

Message: On Tuesday September 27, 2011 there will be a one-day workshop at Stevens Institute of
Technology in Hoboken, New Jersey addressing the current state of the art at the confluence of
scanning electron microscopy, focused ion-beam processing, and cryogenic specimen manipulation methods.
More details and registration information can be found at the Workshop website:
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 7 Sep 2011 17:50:50 -0500
Subject: [Microscopy] viaWWW:Spectroscopy/microscopy

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Email: bradbury.arcana-at-btinternet.com

Name: david bradabuey

Organization: retired

Title-Subject: [Filtered] Spectroscopy/microscopy

Message: Hi Folks.

Has anyone an old spectrometer (U/V Vis) they wish to donate to an old timer, I am presently
researching micrometeroites and bactiological magnetite, I am willing to collect or pay postage if
you can help. UK only please.

Many Thanks.

David Bradbury.
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From: Nicola.Weston-at-nottingham.ac.uk
Date: Thu, 8 Sep 2011 07:10:23 -0500
Subject: [Microscopy] Ultramicrotomy of Mg particles- Thanks

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Thanks all for your ideas. I should of course have added the particle size. DOH!
Spheres are ranging from 30 to over 100 microns so my usual powder prep technique will not work.
I think I'll send him over to another department which has a FIB-SEM!

I may persevere with some sectioning though as it's all good practice.This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 8 Sep 2011 08:34:16 -0500
Subject: [Microscopy] viaWWW:Do you know the person who operated this Stereoscan system

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Email: scopes.master-at-gmail.com

Name: Hamid R. Shakeri

Organization: Aviceena Metallurgical Research Services

Title-Subject: [Filtered] Do you know the person who operated this system in Maryland?

Message: Hello to all,
I am looking for the person who used to operate a Cambridge Stereoscan 180 at the following address:
Advanced Biotech
9108 Guilford Road
Columbia, MD 21045

We have acquired this system trying to make it work again and if could get in touch with the
previous operator, it will be a great help for us.
If you know this person please pass my email address:
scopes.master-at-gmail.com
to her/him.

Many thanks
Hamid R. Shakeri

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From: nholson-at-ucsd.edu
Date: Thu, 8 Sep 2011 13:34:49 -0500
Subject: [Microscopy] banned substances

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--
I recently had someone put a sample in our TEM that gummed up the
holder and contaminated the objective aperture. Another person lost
their support film and it dropped into the lenses necessitating
another service call. Two other people have asked me to allow them
to also put in questionable samples. We don't do any thin sectioning
here so it is all particulate samples. When I train individuals I
ask what their samples will be but many times, after they are
trained, these same people take on samples from colleagues and it is
those samples that I worry about.

What do some of the rest of you do in situations like this? I am
running a multi-user facility and people run their own samples after
they are trained. Do any of you have a banned list of substances
that you don't allow in your instruments?

Norm Olson


______________________________________________________________
Norm Olson
Cryoelectron Microscopy Facilities Manager
1510 Bonner Hall
Department of Chemistry & Biochemistry, MC-0378
University of California San Diego
La Jolla, CA 92093-0378
nholson-at-ucsd.edu
http://cryoem.ucsd.edu
Cell: (858)220-2183
(858)822-6718 - Office; (858)534-5846 - Fax
______________________________________________________________

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From: dsherman-at-purdue.edu
Date: Thu, 8 Sep 2011 16:01:51 -0500
Subject: [Microscopy] Re: banned substances

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Norm,

You cannot monitor each person and their samples. You just have to try to
teach them what is an appropriate and then trust them to act accordingly.

It sounds like the one person used a support grid with too much sample on
it, thus getting residue on the holder. Likely this sample "boiled in the
beam and that was what contaminated your aperture. I tell them that, first
of all, you should not be able to see the sample on the grid. If you do
than it is probably too thick. Secondly, the grid must be dry before
inserting, and third, if any sign of sample instability is seen than they
must immediately remove it from the microscope. This usually means there is
residual material that is not stable when exposed to the heat and energy of
the electron beam.

The other person had a poorly prepared sample as well. Most likely it was
not firmly in the holder and thus fell off the holder. I would think any
support film that was not well adhered to the grid would normally come off
during sample preparation. This should certainly not happen with any sample
and is not a problem with sectioned material. The sections must adhere well
to the support grid or they would not withstand subsequent staining. It is
pretty easy to hold a grid up to light and see if the surface is reflective
due to the presence of a film. If some squares are dark and others light
than you know the film is not covering the entire grid.

The instruments are there to be used so I would not like to indiscriminately
ban samples. However, users should be encouraged to talk to you before they
put questionable samples in the scope so that you can both brain-storm about
possible problems and ways to solve them. Sometimes this can just be
sandwiching the sample by putting an extra layer on top of the
sample...either carbon or formvar film will work.

If there is a way to mess up a scope a student will find it. That is just
one of the many reasons for training users thoroughly on not just the
microscope but also sample preparation and then all you can do is hope they
absorb the message.

Just my two cents from years of experience.

Debby
--
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy/


} From: Norman Olson {nholson-at-ucsd.edu}
} Reply-To: Norman Olson {nholson-at-ucsd.edu}
} Date: Thu, 8 Sep 2011 14:37:06 -0400
} To: Debby Sherman {dsherman-at-purdue.edu}
} Subject: [Microscopy] banned substances
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
}
} --
} I recently had someone put a sample in our TEM that gummed up the
} holder and contaminated the objective aperture. Another person lost
} their support film and it dropped into the lenses necessitating
} another service call. Two other people have asked me to allow them
} to also put in questionable samples. We don't do any thin sectioning
} here so it is all particulate samples. When I train individuals I
} ask what their samples will be but many times, after they are
} trained, these same people take on samples from colleagues and it is
} those samples that I worry about.
}
} What do some of the rest of you do in situations like this? I am
} running a multi-user facility and people run their own samples after
} they are trained. Do any of you have a banned list of substances
} that you don't allow in your instruments?
}
} Norm Olson
}
}
} ______________________________________________________________
} Norm Olson
} Cryoelectron Microscopy Facilities Manager
} 1510 Bonner Hall
} Department of Chemistry & Biochemistry, MC-0378
} University of California San Diego
} La Jolla, CA 92093-0378
} nholson-at-ucsd.edu
} http://cryoem.ucsd.edu
} Cell: (858)220-2183
} (858)822-6718 - Office; (858)534-5846 - Fax
} ______________________________________________________________
}
} ==============================Original Headers==============================
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} 6, 38 -- Subject: banned substances
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12, 31 -- From dsherman-at-purdue.edu Thu Sep 8 16:01:50 2011
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From: John.Mardinly-at-asu.edu
Date: Thu, 8 Sep 2011 18:21:01 -0500
Subject: [Microscopy] banned substances

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



John Mardinly,
ASU

We had one group of dental materials students at Michigan that were looking at human teeth. They did not attach the teeth properly, and they fell off the holders. Of course, they never admitted that to anyone, and they had so many teeth, they just kept putting more samples in until they got the photos they wanted. The next time I opened the specimen chamber, I found it full of human teeth. It did not take long to figure out where they came from. Just hope one of those clowns is not drilling out YOUR teeth the next time you go to the dentist!


On Sep 8, 2011, at 2:59 PM, "dsherman-at-purdue.edu" {dsherman-at-purdue.edu} wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Norm,
}
} You cannot monitor each person and their samples. You just have to try to
} teach them what is an appropriate and then trust them to act accordingly.
}
} It sounds like the one person used a support grid with too much sample on
} it, thus getting residue on the holder. Likely this sample "boiled in the
} beam and that was what contaminated your aperture. I tell them that, first
} of all, you should not be able to see the sample on the grid. If you do
} than it is probably too thick. Secondly, the grid must be dry before
} inserting, and third, if any sign of sample instability is seen than they
} must immediately remove it from the microscope. This usually means there is
} residual material that is not stable when exposed to the heat and energy of
} the electron beam.
}
} The other person had a poorly prepared sample as well. Most likely it was
} not firmly in the holder and thus fell off the holder. I would think any
} support film that was not well adhered to the grid would normally come off
} during sample preparation. This should certainly not happen with any sample
} and is not a problem with sectioned material. The sections must adhere well
} to the support grid or they would not withstand subsequent staining. It is
} pretty easy to hold a grid up to light and see if the surface is reflective
} due to the presence of a film. If some squares are dark and others light
} than you know the film is not covering the entire grid.
}
} The instruments are there to be used so I would not like to indiscriminately
} ban samples. However, users should be encouraged to talk to you before they
} put questionable samples in the scope so that you can both brain-storm about
} possible problems and ways to solve them. Sometimes this can just be
} sandwiching the sample by putting an extra layer on top of the
} sample...either carbon or formvar film will work.
}
} If there is a way to mess up a scope a student will find it. That is just
} one of the many reasons for training users thoroughly on not just the
} microscope but also sample preparation and then all you can do is hope they
} absorb the message.
}
} Just my two cents from years of experience.
}
} Debby
} --
} Debby Sherman, Director Phone: 765-494-6666
} Life Science Microscopy Facility FAX: 765-494-5896
} Purdue University E-mail: dsherman-at-purdue.edu
} S-052 Whistler Building
} 170 S. University Street
} West Lafayette, IN 47907
} http://www.ag.purdue.edu/facilities/microscopy/
}
}
} } From: Norman Olson {nholson-at-ucsd.edu}
} } Reply-To: Norman Olson {nholson-at-ucsd.edu}
} } Date: Thu, 8 Sep 2011 14:37:06 -0400
} } To: Debby Sherman {dsherman-at-purdue.edu}
} } Subject: [Microscopy] banned substances
} }
} }
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} }
} } --
} } I recently had someone put a sample in our TEM that gummed up the
} } holder and contaminated the objective aperture. Another person lost
} } their support film and it dropped into the lenses necessitating
} } another service call. Two other people have asked me to allow them
} } to also put in questionable samples. We don't do any thin sectioning
} } here so it is all particulate samples. When I train individuals I
} } ask what their samples will be but many times, after they are
} } trained, these same people take on samples from colleagues and it is
} } those samples that I worry about.
} }
} } What do some of the rest of you do in situations like this? I am
} } running a multi-user facility and people run their own samples after
} } they are trained. Do any of you have a banned list of substances
} } that you don't allow in your instruments?
} }
} } Norm Olson
} }
} }
} } ______________________________________________________________
} } Norm Olson
} } Cryoelectron Microscopy Facilities Manager
} } 1510 Bonner Hall
} } Department of Chemistry & Biochemistry, MC-0378
} } University of California San Diego
} } La Jolla, CA 92093-0378
} } nholson-at-ucsd.edu
} } http://cryoem.ucsd.edu
} } Cell: (858)220-2183
} } (858)822-6718 - Office; (858)534-5846 - Fax
} } ______________________________________________________________
} }
} } ==============================Original Headers==============================
} } 6, 38 -- From nholson-at-ucsd.edu Thu Sep 8 13:34:48 2011
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} 12, 31 -- {microscopy-at-microscopy.com}
} 12, 31 -- Date: Thu, 8 Sep 2011 17:01:47 -0400
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From: DusevichV-at-umkc.edu
Date: Fri, 9 Sep 2011 08:47:44 -0500
Subject: [Microscopy] Used SEM cost

Contents Retrieved from Microscopy Listserver Archives
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Hi Listers,

Do you think price of $60,000 for 10 years old VP SEM (tungsten, Windows NT, turbomolecular pump, 100 mm X travel) is right?
What can cost 10 years old EDS system (LN, basic software, no fancy staff)?

Thank you,

Vladimir


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From: oshel1pe-at-cmich.edu
Date: Fri, 9 Sep 2011 09:15:58 -0500
Subject: [Microscopy] Re: Used SEM cost

Contents Retrieved from Microscopy Listserver Archives
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Vladimir,

Buying or selling?
Either way ... first, it depends on what VP SEM, what extras does it
have, what condition is it in, and has it been maintained under
service contract for all its life - and does it have a complete
service history?
But.
Likely $60k is too high or way too high. Purchase price has to allow
for the costs of deinstalling, packing, removing, and shipping the
SEM to its new home. This will cost several thousand dollars.

The EDS system likely won't go for much or less. Especially if the
condition of the LN2 dewar isn't documented (does it need to be baked
out and pumped?), nor the condition of the detector window. Usually
the EDS is included in the sale price of the SEM.
Plus, how does the VP SEM in question compare to a new table-top or
"portable SEM", which are typically low vacuum units, and sell for
~$70k-$85k. (Can be more depending on brand and bells and whistles.)
Meaning, why pay $60k for a 10 year old SEM with whatever age and
service issues it has when one could spend $10-15k more and get a
brand new SEM with a warranty? Is the old SEM still capable of higher
resolution work? Does the buyer need the kV range of the used SEM, or
are the limited ranges of the lower-cost new SEMs sufficient?
Etc.

One way to get an idea of the going price is to look at successful
sales on ebay and publicsurplus.com (where many universities and the
like sell used EMs and other equipment). And trawl the web for
companies that buy old lab equipment and get prices from them.
Purchase prices, not selling prices.

Phil

} Hi Listers,
}
} Do you think price of $60,000 for 10 years old VP SEM (tungsten,
} Windows NT, turbomolecular pump, 100 mm X travel) is right?
} What can cost 10 years old EDS system (LN, basic software, no fancy staff)?
}
} Thank you,
}
} Vladimir

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: bozzola-at-siu.edu
Date: Fri, 9 Sep 2011 10:54:20 -0500
Subject: [Microscopy] Re: Used SEM cost

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Well, that is very interesting. You might inquire about the
availability of parts for this instrument. Here is my opinion:

We have a 14 yr old TEM (tungsten) with turbopump that has been out of
service for 3+ years due to lack of parts. Some time ago, on this
listserver, I asked about the life expectancy of a modern TEM and SEM
and the responses averaged 12-15 years. Appalling!

For a usable EDS system of that age, I think that $20-30K would be
reasonable. After all, you can buy a nice SDD system these days for
$80K or so.

John Bozzola

On Fri, Sep 9, 2011 at 8:49 AM, {DusevichV-at-umkc.edu} wrote:
}
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} Hi Listers,
}
} Do you think price of $60,000 for 10 years old VP SEM (tungsten, Windows NT, turbomolecular pump, 100 mm X travel) is right?
} What can cost 10 years old EDS system (LN, basic software, no fancy staff)?
}
} Thank you,
}
} Vladimir
}
}
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}



--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: paul_hazelton-at-umanitoba.ca
Date: Fri, 9 Sep 2011 14:29:23 -0500
Subject: [Microscopy] Used SEM cost

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

John et al

What's truly appalling is that I'm still running 2 old 201s (~36yrs old)
and a CM10 (~25yrs). But then, I have a 3rd 201 as spare parts to dip
into if needed.

Paul
--
Paul R. Hazelton, PhD
Viral Gastroenteritis Study Group
University of Manitoba
Department of Medical Microbiology
511 Basic Medical Sciences Building
745 Bannatyne Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
paulhazelton-at-mts.net
Phone: 204-789-3313 (w);
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 9 Sep 2011 15:16:41 -0500
Subject: [Microscopy] viaWWW:Materials Characterization Post-Doctoral Fellow Position

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Email: jbjasinski-at-gmail.com Name: Jacek Jasinski

Organization: Conn Center for Renewable Energy Research, University of Louisville

Title-Subject: [Filtered] Materials Characterization Post-Doctoral Fellow Position

Message: The Conn Center for Renewable Energy Research at the University of Louisville has an
immediate opening for a two-year post-doctoral position for a person with expertise and demonstrated
hands-on experience in materials characterization techniques, most notably, in TEM. The successful
candidate will work on projects related to materials characterization/development with UofL faculty
and students, as well as with external academic and industrial collaborators and customers. On a
regular basis, he or she will be involved in data acquisition, analysis, and technical
report/publication preparation. Other duties may include equipment maintenance, calibration, and
user training.

Requirements:

Applicants who meet the following requirements will be considered:

1. A PhD with 2-3 years post-doctoral experience, or a recent PhD, in material science, chemical
engineering, condensed matter physics, or a closely related subject area. 2. Strong academic
background and hands-on experience in transmission electron microscopy of materials. Demonstrated
expertise in at least some of the TEM-related techniques including HRTEM, electron diffraction,
STEM, EDX, EELS, EFTEM, or in situ TEM, are required. 3. Good oral and written communication
skills. 4. Good judgment, clear sense of purpose, and accountability.

Desirable is also hands-on research experience in one or more of the following areas:

1. Surface science and UHV techniques including XPS, Auger Spectroscopy and UPS. 2. Other materials
characterization techniques such as XRD and SEM.
3. Laser-spectroscopic techniques including micro-Raman, PL and FTIR.


Salary: Negotiable based on the level of experience and expertise.


Interested candidates should contact:

Dr. Jacek Jasinski
Theme Leader
Materials Characterization
Conn Center for Renewable Energy Research
University of Louisville
Louisville, KY 40292
Tel: (502) 852-6338
E-mail: jbjasinski-at-gmail.com (or jacek.jasinski-at-louisville.edu)



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From: vray-at-partbeamsystech.com
Date: Sat, 10 Sep 2011 02:04:23 -0500
Subject: [Microscopy] Re: Used SEM cost

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Vladimir,

As with anything else, price mainly depends on how badly seller needs to
get rid of it and how desperately buyer wants it "right now."
Flea-market psychology aside - if we are talking about basic SEM without
bells and whistles 10 years of age, then IMHO:

If it is not operational (regardless of the reasons why and claims about
its condition) then the price is about... outrageous;

If it is operational but not currently under OEM (or OEM-like) service
and/or does not fully conform to original specifications - the price is
about x3 too high;

If it is fully serviced and conforms to original specifications - the
price is about x2 too high;

If it was fully rebuilt to like-new condition by the OEM or reputable
service provider, fully conforms to original specifications, and comes
with 1 year parts and labor warranty, then the price is about right.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 9/9/2011 9:49 AM, DusevichV-at-umkc.edu wrote:
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} Hi Listers,
}
} Do you think price of $60,000 for 10 years old VP SEM (tungsten, Windows NT, turbomolecular pump, 100 mm X travel) is right?
} What can cost 10 years old EDS system (LN, basic software, no fancy staff)?
}
} Thank you,
}
} Vladimir
}
}
} ==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 10 Sep 2011 10:46:40 -0500
Subject: [Microscopy] viaWWW:3-Dimensional reconstruction at EM level

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Email: tamavlyutov-at-wisc.edu Name: Timur Mavlyutov

Organization: University of Wisconsin

Title-Subject: [Filtered] 3-Dimensional reconstruction at EM level

Message: I want to make 3-dimensional reconstraction of biological sample (part of the neuron about
5 micron deep) at EM level. I know that I need to generate about 50 serial sections for it, all 100
nm thick. But what then? What program should I use, how to position images and to make final
reconstruction?

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From: vitalylazar-at-att.net
Date: Sat, 10 Sep 2011 10:54:00 -0500
Subject: [Microscopy] Used SEM cost

Contents Retrieved from Microscopy Listserver Archives
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Correct!

Vitaly Feingold
SIA
2773 Heath Lane
Duluth GA 30096
Ph. 770-232-7785
Fax 770-232-1791
www.sia-cam.com
vitaly-at-sia-cam.com

On 9/10/2011 3:05 AM, vray-at-partbeamsystech.com wrote:
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}
} Hi Vladimir,
}
} As with anything else, price mainly depends on how badly seller needs to
} get rid of it and how desperately buyer wants it "right now."
} Flea-market psychology aside - if we are talking about basic SEM without
} bells and whistles 10 years of age, then IMHO:
}
} If it is not operational (regardless of the reasons why and claims about
} its condition) then the price is about... outrageous;
}
} If it is operational but not currently under OEM (or OEM-like) service
} and/or does not fully conform to original specifications - the price is
} about x3 too high;
}
} If it is fully serviced and conforms to original specifications - the
} price is about x2 too high;
}
} If it was fully rebuilt to like-new condition by the OEM or reputable
} service provider, fully conforms to original specifications, and comes
} with 1 year parts and labor warranty, then the price is about right.
}
} Cheers :)
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063 - leave a message with call-back number
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
} Web: www.freudlabs.com
}
} On 9/9/2011 9:49 AM, DusevichV-at-umkc.edu wrote:
} } ----------------------------------------------------------------------------
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} }
} } Hi Listers,
} }
} } Do you think price of $60,000 for 10 years old VP SEM (tungsten, Windows NT, turbomolecular pump, 100 mm X travel) is right?
} } What can cost 10 years old EDS system (LN, basic software, no fancy staff)?
} }
} } Thank you,
} }
} } Vladimir
} }
} }
} } ==============================Original Headers==============================
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From: ben.micklem-at-pharm.ox.ac.uk
Date: Mon, 12 Sep 2011 03:57:18 -0500
Subject: [Microscopy] Re: viaWWW:3-Dimensional reconstruction at EM level

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Timur,

Users at our unit have used Reconstruct for this purpose:
http://synapses.clm.utexas.edu/tools/reconstruct/reconstruct.stm

Regards,


Ben

--
Research Support Manager
MRC Anatomical Neuropharmacology Unit, Mansfield Road,
Oxford, OX1 3TH, United Kingdom. Telephone: 01865 271649
{http://mrcanu.pharm.ox.ac.uk/}




On 10/09/2011 16:56, "microscopylistserver-noreply-at-microscopy.com"
{microscopylistserver-noreply-at-microscopy.com} wrote:

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From: DusevichV-at-umkc.edu
Date: Mon, 12 Sep 2011 10:03:08 -0500
Subject: [Microscopy] RE: Used SEM cost

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Thanks a lot for all replies and advice on the topic.

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

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} From: DusevichV-at-umkc.edu [mailto:DusevichV-at-umkc.edu]
} Sent: Friday, September 09, 2011 8:49 AM
} To: Dusevich, Vladimir
} Subject: [Microscopy] Used SEM cost
}
}
}
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} Hi Listers,
}
} Do you think price of $60,000 for 10 years old VP SEM (tungsten,
} Windows NT, turbomolecular pump, 100 mm X travel) is right?
} What can cost 10 years old EDS system (LN, basic software, no fancy
} staff)?
}
} Thank you,
}
} Vladimir
}
}
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From: vic555-at-gmail.com
Date: Mon, 12 Sep 2011 10:31:45 -0500
Subject: [Microscopy] Lattice Parameter for Steel Phases

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Hello,

Does anyone know (or refer me to literature) the lattice parameter for
Austenite, Martensite and Cementite for 1% steel quenched and tempered?

I am trying to solve the SAD ring patterns for these structures.

Thanks
Vikram

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4, 24 -- Subject: Lattice Parameter for Steel Phases
4, 24 -- From: Vikram Bedekar {vic555-at-gmail.com}
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From: rok210-at-lehigh.edu
Date: Mon, 12 Sep 2011 10:56:30 -0500
Subject: [Microscopy] Re: Lattice Parameter for Steel Phases

Contents Retrieved from Microscopy Listserver Archives
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Hi Vikram,

Andrews Dyson and Keown back in 1971 had lots of diffraction patterns to
do with steels. Book is called The interpretation of diffraction
patterns, good luck finding it.

If you've got the samples then you should be able to index the ring
patterns from these known structures.

Cheers
Rob


On 9/12/2011 11:38 AM, vic555-at-gmail.com wrote:
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}
} Hello,
}
} Does anyone know (or refer me to literature) the lattice parameter for
} Austenite, Martensite and Cementite for 1% steel quenched and tempered?
}
} I am trying to solve the SAD ring patterns for these structures.
}
} Thanks
} Vikram
}
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From: bbandli-at-d.umn.edu
Date: Mon, 12 Sep 2011 11:54:06 -0500
Subject: [Microscopy] Re: Measuring Aragonite/Calcite ratios

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Hi Robert,

Two methods come to mind: polarized light microscopy (PLM) and electron
backscatter diffraction (EBSD).  It all depends on what you have access to
and the particle size of your samples.  Bigger particles should be easy to
differentiate by PLM (uniaxial calcite vs. biaxial aragonite and refractive
index differences), smaller (or larger) particles could be done by EBSD.

XRD might still be possible with a zero background sample holder if you have
access to one.

Hope this helps.

Best,
Bryan




--
___________________________________________________________________________
Bryan R. Bandli

Research Instrumentation Laboratory Manager
University of Minnesota, Duluth
229 Heller Hall
1114 Kirby Dr.
Duluth, MN  55812
218-726-7362
==================================================================


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 13 Sep 2011 08:24:09 -0500
Subject: [Microscopy] viaWWW:Olympus DP70 Camera Software/Drivers

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Email: tomw-at-uidaho.edu Name: Tom Williams

Organization: UI

Title-Subject: [Filtered] Olympus DP70 Camera Software/Drivers

Message: We have an Olympus DP 70 camera mounted on an Olympus BX 51 Fluorescence PLM (inherited
from a former faculty). The supporting computer had to have a complete system rebuild and we cannot
find the original software disks. Bottomline: we cannot get the camera to communicate with the
computer (currently running Win XP). Would anyone know of a source for drivers or supporting
software?
Any assistance would be greatly appreciated!

Tom


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 13 Sep 2011 08:24:58 -0500
Subject: [Microscopy] viaWWW:EDS dectector- time to cool down

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Email: rct204-at-gmail.com Name: RamChandra

Organization: Haldor Topsoe

Title-Subject: [Filtered] EDS dectector- time to cool down

Message: Hi all,

We have a traditional Si-Li EDS detector on or CM200 microscope. We have just noticed that when the
we add liquid nitrogen the crystal takes almost two days to cool down. We observe half a million
counts just after we add liquid N2 with the detector retracted and it takes almost two days to come
down to around 10. what could be the possible reason for this?
I think it usually it takes only about two hours for the crystal to cool down. I dont think there
is any ice in the dewar.

Any ideas?

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From: bozzola-at-siu.edu
Date: Tue, 13 Sep 2011 09:34:27 -0500
Subject: [Microscopy] Re: viaWWW:EDS dectector- time to cool down

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

It sounds like you are letting your detector come to room temp between
uses. It is more likely to develop ice-buildups in this scenario. I
would verify that you really do not have ice inside the dewar since
that is the most likely cause of your extended cool down time.

Another possibility is that the cooling-connection (contact) between
the LN2 and the detector has become loose.

John Bozzola

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From: wesaia-at-iastate.edu
Date: Tue, 13 Sep 2011 10:24:05 -0500
Subject: [Microscopy] viaWWW:EDS dectector- time to cool down

Contents Retrieved from Microscopy Listserver Archives
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It sounds like you are applying voltage to the detector as soon as you have introduced the LN2. I don't know that is a good idea. I was of the impression that the Li can quickly diffuse out of the crystal if voltage is applied while the crystal is warm. I think you would want to let the crystal cool for some time before applying power. Once the Li is gone, the crystal would need to be replaced. I would like someone else with more experience to comment on that. We keep our detectors cold 24-7.

You don't mention what brand of system you have. We have an older Oxford ISIS. Its normal behavior is to register hundreds if not thousands of counts when the software is first started as the various parameters are optimized internally. After about 5 minutes, the count had stabilized around 200-300 cps with the beam off. I would not expect it to get down to 10 cps since there is always a strobe peak present for reference.

Warren Straszheim

-----Original Message-----
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Email: rct204-at-gmail.com Name: RamChandra

Organization: Haldor Topsoe

Title-Subject: [Filtered] EDS dectector- time to cool down

Message: Hi all,

We have a traditional Si-Li EDS detector on or CM200 microscope. We have just noticed that when the
we add liquid nitrogen the crystal takes almost two days to cool down. We observe half a million
counts just after we add liquid N2 with the detector retracted and it takes almost two days to come
down to around 10. what could be the possible reason for this?
I think it usually it takes only about two hours for the crystal to cool down. I dont think there
is any ice in the dewar.

Any ideas?

Login Host: 195.41.211.254
---------------------------------------------------------------------------



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From: frank_karl-at-ardl.com
Date: Tue, 13 Sep 2011 10:52:32 -0500
Subject: [Microscopy] viaWWW:EDS dectector- time to cool down

Contents Retrieved from Microscopy Listserver Archives
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My experience with LN2 cooled EDS is to waited at least an hour after the dewar has stopped simmering off LN2. Two hours sounds about right from room temperature. Let me agree with the other responders. It's better to keep the Si-Li detector cold all the time. I will, on 4 day week-ends turn off the EDS unplug it if necessary, and allow it to warm up to room temp under vacuum. I want to help evaporate the pump oil which collects on the probe. But I give it plenty of time to cool down. With out the EDS, well, my SEM is just a big camera so I protect it with caution.

-----Original Message-----
X-from: wesaia-at-iastate.edu [mailto:wesaia-at-iastate.edu]
Sent: Tuesday, September 13, 2011 11:31 AM
To: Frank Karl

It sounds like you are applying voltage to the detector as soon as you have introduced the LN2. I don't know that is a good idea. I was of the impression that the Li can quickly diffuse out of the crystal if voltage is applied while the crystal is warm. I think you would want to let the crystal cool for some time before applying power. Once the Li is gone, the crystal would need to be replaced. I would like someone else with more experience to comment on that. We keep our detectors cold 24-7.

You don't mention what brand of system you have. We have an older Oxford ISIS. Its normal behavior is to register hundreds if not thousands of counts when the software is first started as the various parameters are optimized internally. After about 5 minutes, the count had stabilized around 200-300 cps with the beam off. I would not expect it to get down to 10 cps since there is always a strobe peak present for reference.

Warren Straszheim

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Organization: Haldor Topsoe

Title-Subject: [Filtered] EDS dectector- time to cool down

Message: Hi all,

We have a traditional Si-Li EDS detector on or CM200 microscope. We have just noticed that when the
we add liquid nitrogen the crystal takes almost two days to cool down. We observe half a million
counts just after we add liquid N2 with the detector retracted and it takes almost two days to come
down to around 10. what could be the possible reason for this?
I think it usually it takes only about two hours for the crystal to cool down. I dont think there
is any ice in the dewar.

Any ideas?

Login Host: 195.41.211.254
---------------------------------------------------------------------------



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From: kenconverse-at-qualityimages.biz
Date: Tue, 13 Sep 2011 11:14:04 -0500
Subject: [Microscopy] viaWWW:EDS dectector- time to cool down

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

If Warren is correct and you've been turning on the bias before at least a 2
hour cool-down (my more conservative customers prefer overnight), you
probably need a detector rebuild because the Li has been pulled out of the
Si and also, the optically coupled FET may be dead. It is also cooled.

Ken Converse,
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: frank_karl-at-ardl.com [mailto:frank_karl-at-ardl.com]
Sent: Tuesday, September 13, 2011 11:54 AM
To: kenconverse-at-qualityimages.biz

My experience with LN2 cooled EDS is to waited at least an hour after the
dewar has stopped simmering off LN2. Two hours sounds about right from room
temperature. Let me agree with the other responders. It's better to keep
the Si-Li detector cold all the time. I will, on 4 day week-ends turn off
the EDS unplug it if necessary, and allow it to warm up to room temp under
vacuum. I want to help evaporate the pump oil which collects on the probe.
But I give it plenty of time to cool down. With out the EDS, well, my SEM
is just a big camera so I protect it with caution.

-----Original Message-----
X-from: wesaia-at-iastate.edu [mailto:wesaia-at-iastate.edu]
Sent: Tuesday, September 13, 2011 11:31 AM
To: Frank Karl

It sounds like you are applying voltage to the detector as soon as you have
introduced the LN2. I don't know that is a good idea. I was of the
impression that the Li can quickly diffuse out of the crystal if voltage is
applied while the crystal is warm. I think you would want to let the crystal
cool for some time before applying power. Once the Li is gone, the crystal
would need to be replaced. I would like someone else with more experience to
comment on that. We keep our detectors cold 24-7.

You don't mention what brand of system you have. We have an older Oxford
ISIS. Its normal behavior is to register hundreds if not thousands of counts
when the software is first started as the various parameters are optimized
internally. After about 5 minutes, the count had stabilized around 200-300
cps with the beam off. I would not expect it to get down to 10 cps since
there is always a strobe peak present for reference.

Warren Straszheim

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Email: rct204-at-gmail.com Name: RamChandra

Organization: Haldor Topsoe

Title-Subject: [Filtered] EDS dectector- time to cool down

Message: Hi all,

We have a traditional Si-Li EDS detector on or CM200 microscope. We have
just noticed that when the
we add liquid nitrogen the crystal takes almost two days to cool down. We
observe half a million
counts just after we add liquid N2 with the detector retracted and it takes
almost two days to come
down to around 10. what could be the possible reason for this?
I think it usually it takes only about two hours for the crystal to cool
down. I dont think there
is any ice in the dewar.

Any ideas?

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From: jsiegmund-at-7thwavelabs.com
Date: Tue, 13 Sep 2011 11:50:37 -0500
Subject: [Microscopy] viaWWW:Olympus DP70 Camera Software/Drivers

Contents Retrieved from Microscopy Listserver Archives
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http://microscope.olympus-global.com/en/ga/support/software/


Good luck!

Joachim

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Email: tomw-at-uidaho.edu Name: Tom Williams

Organization: UI

Title-Subject: [Filtered] Olympus DP70 Camera Software/Drivers

Message: We have an Olympus DP 70 camera mounted on an Olympus BX 51
Fluorescence PLM (inherited
from a former faculty). The supporting computer had to have a complete
system rebuild and we cannot
find the original software disks. Bottomline: we cannot get the camera
to communicate with the
computer (currently running Win XP). Would anyone know of a source for
drivers or supporting
software?
Any assistance would be greatly appreciated!

Tom


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From: FMonson-at-wcupa.edu
Date: Tue, 13 Sep 2011 12:59:23 -0500
Subject: [Microscopy] viaWWW:EDS dectector- time to cool down

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Sounds like one of two things.
1. Loss of Dewar vacuum?
2. Perforated window.

Due to inexperience, I am unaware of the other 'ten' alternatives.

Cheers and best wishes,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl

If one looks long enough, one may actually see something frozen in time that flashes one's mind to a new state.
1. The day that I asked myself how the hydrogen atom's mass could actually be: 1.0008.
2. The day, while looking at a slide of some tissue, I saw a leukocyte that had been caught sneaking in or out of a capillary: http://www.annualreviews.org/doi/abs/10.1146/annurev-pathol-011110-130224

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Email: rct204-at-gmail.com Name: RamChandra

Organization: Haldor Topsoe

Title-Subject: [Filtered] EDS dectector- time to cool down

Message: Hi all,

We have a traditional Si-Li EDS detector on or CM200 microscope. We have just noticed that when the
we add liquid nitrogen the crystal takes almost two days to cool down. We observe half a million
counts just after we add liquid N2 with the detector retracted and it takes almost two days to come
down to around 10. what could be the possible reason for this?
I think it usually it takes only about two hours for the crystal to cool down. I dont think there
is any ice in the dewar.

Any ideas?

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From: jpshield-at-uga.edu
Date: Tue, 13 Sep 2011 13:24:57 -0500
Subject: [Microscopy] nanoplast replacement

Contents Retrieved from Microscopy Listserver Archives
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Hi everyone,
I am looking for a substitute for Nanoplast resin. I need something relatively water soluble for working with clay suspensions.
THanks
John Shields
Univ. of Georgia
Athens


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From: r.sims-at-auckland.ac.nz
Date: Tue, 13 Sep 2011 14:27:14 -0500
Subject: [Microscopy] viaWWW:EDS dectector- time to cool down

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I agree completely about it being better to keep the LN2 in there all the time.

Warming up can degrade the internal vacuum, especially if the detector vacuum system is not well designed.

I wrecked a detector once by warming it up over Xmas, after being assured by the manufacturer that is would be OK. On recooling (reapplying the bias after a day of recooling), the resolution had degraded appreciably. I rechecked with the manufacturer who then said that was to be expected!

I can't post that manufacturer's name here, but it is available on request. I would advise against buying a detector from that manufacturer.

cheers
Ritchie Sims
The University of Auckland

________________________________________
X-from: frank_karl-at-ardl.com [frank_karl-at-ardl.com]
Sent: 14 September 2011 03:53
To: Ritchie Sims

My experience with LN2 cooled EDS is to waited at least an hour after the dewar has stopped simmering off LN2. Two hours sounds about right from room temperature. Let me agree with the other responders. It's better to keep the Si-Li detector cold all the time. I will, on 4 day week-ends turn off the EDS unplug it if necessary, and allow it to warm up to room temp under vacuum. I want to help evaporate the pump oil which collects on the probe. But I give it plenty of time to cool down. With out the EDS, well, my SEM is just a big camera so I protect it with caution.

-----Original Message-----
X-from: wesaia-at-iastate.edu [mailto:wesaia-at-iastate.edu]
Sent: Tuesday, September 13, 2011 11:31 AM
To: Frank Karl

It sounds like you are applying voltage to the detector as soon as you have introduced the LN2. I don't know that is a good idea. I was of the impression that the Li can quickly diffuse out of the crystal if voltage is applied while the crystal is warm. I think you would want to let the crystal cool for some time before applying power. Once the Li is gone, the crystal would need to be replaced. I would like someone else with more experience to comment on that. We keep our detectors cold 24-7.

You don't mention what brand of system you have. We have an older Oxford ISIS. Its normal behavior is to register hundreds if not thousands of counts when the software is first started as the various parameters are optimized internally. After about 5 minutes, the count had stabilized around 200-300 cps with the beam off. I would not expect it to get down to 10 cps since there is always a strobe peak present for reference.

Warren Straszheim

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Email: rct204-at-gmail.com Name: RamChandra

Organization: Haldor Topsoe

Title-Subject: [Filtered] EDS dectector- time to cool down

Message: Hi all,

We have a traditional Si-Li EDS detector on or CM200 microscope. We have just noticed that when the
we add liquid nitrogen the crystal takes almost two days to cool down. We observe half a million
counts just after we add liquid N2 with the detector retracted and it takes almost two days to come
down to around 10. what could be the possible reason for this?
I think it usually it takes only about two hours for the crystal to cool down. I dont think there
is any ice in the dewar.

Any ideas?

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36, 51 -- Subject: RE: [Microscopy] viaWWW:EDS dectector- time to cool down
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From: kraftpiano-at-gmail.com
Date: Tue, 13 Sep 2011 14:47:07 -0500
Subject: [Microscopy] viaWWW:EDS dectector- time to cool down

Contents Retrieved from Microscopy Listserver Archives
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I was just thinking that another side effect of warming and cooling the detector might be that the solid rod that runs down the length of the snout (For cooling purposes) will expand and contract with each cycle- does this expansion and contraction loosen the thermal connection between the rod and chip, or could it push the crystal up against the window?

--Justin A. Kraft


On Sep 13, 2011, at 2:31 PM, r.sims-at-auckland.ac.nz wrote:

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} I agree completely about it being better to keep the LN2 in there all the time.
}
} Warming up can degrade the internal vacuum, especially if the detector vacuum system is not well designed.
}
} I wrecked a detector once by warming it up over Xmas, after being assured by the manufacturer that is would be OK. On recooling (reapplying the bias after a day of recooling), the resolution had degraded appreciably. I rechecked with the manufacturer who then said that was to be expected!
}
} I can't post that manufacturer's name here, but it is available on request. I would advise against buying a detector from that manufacturer.
}
} cheers
} Ritchie Sims
} The University of Auckland
}
} ________________________________________
} X-from: frank_karl-at-ardl.com [frank_karl-at-ardl.com]
} Sent: 14 September 2011 03:53
} To: Ritchie Sims
} Subject: [Microscopy] viaWWW:EDS dectector- time to cool down
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} My experience with LN2 cooled EDS is to waited at least an hour after the dewar has stopped simmering off LN2. Two hours sounds about right from room temperature. Let me agree with the other responders. It's better to keep the Si-Li detector cold all the time. I will, on 4 day week-ends turn off the EDS unplug it if necessary, and allow it to warm up to room temp under vacuum. I want to help evaporate the pump oil which collects on the probe. But I give it plenty of time to cool down. With out the EDS, well, my SEM is just a big camera so I protect it with caution.
}
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} To: Frank Karl
} Subject: [Microscopy] RE: viaWWW:EDS dectector- time to cool down
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} It sounds like you are applying voltage to the detector as soon as you have introduced the LN2. I don't know that is a good idea. I was of the impression that the Li can quickly diffuse out of the crystal if voltage is applied while the crystal is warm. I think you would want to let the crystal cool for some time before applying power. Once the Li is gone, the crystal would need to be replaced. I would like someone else with more experience to comment on that. We keep our detectors cold 24-7.
}
} You don't mention what brand of system you have. We have an older Oxford ISIS. Its normal behavior is to register hundreds if not thousands of counts when the software is first started as the various parameters are optimized internally. After about 5 minutes, the count had stabilized around 200-300 cps with the beam off. I would not expect it to get down to 10 cps since there is always a strobe peak present for reference.
}
} Warren Straszheim
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} Email: rct204-at-gmail.com Name: RamChandra
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} Organization: Haldor Topsoe
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} Title-Subject: [Filtered] EDS dectector- time to cool down
}
} Message: Hi all,
}
} We have a traditional Si-Li EDS detector on or CM200 microscope. We have just noticed that when the
} we add liquid nitrogen the crystal takes almost two days to cool down. We observe half a million
} counts just after we add liquid N2 with the detector retracted and it takes almost two days to come
} down to around 10. what could be the possible reason for this?
} I think it usually it takes only about two hours for the crystal to cool down. I dont think there
} is any ice in the dewar.
}
} Any ideas?
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From: tbargar-at-unmc.edu
Date: Tue, 13 Sep 2011 16:08:43 -0500
Subject: [Microscopy] Need advice on disposing of a Philips CM10

Contents Retrieved from Microscopy Listserver Archives
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A colleague from a neighboring institution needs to get rid of a Philips
CM10 TEM. He asked me if there are any companies that dealt in selling
used TEMs, not a topic that I am current on. So, if anyone knows of any
companies like that please let me know. I'm able to advise them on what
it will take to dispose of it as far as hazmat considerations and the
scrapping of the metals which can be done locally.


Tom Bargar
University of Nebraska Medical Center
Core Electron Microscopy Research Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu

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From: parishcm-at-ornl.gov
Date: Wed, 14 Sep 2011 06:10:58 -0500
Subject: [Microscopy] EBSD: High-alloy austenitic steel sample prep

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Greetings,

Has anyone tried EBSD of high-Ni, high-Co Fe-based austenitic alloys? Our SEM only has one free time block between now and the project's end at end of fiscal year Sep 30, so I want to maximize my chances of getting good patterns for our one shot.

Can anyone recommend a final polish recipe? I'm leaning towards a multi-hour colloidal silica finish, but if anyone had good advice I would appreciate it.

Thanks,
Chad

---------------------
Chad M. Parish, Ph.D.
Microscopy Group
Materials Science and Technology Division
Oak Ridge National Laboratory
Phone: 1 865 574 0092
Email: parishcm-at-ornl.gov
Web: www.ornl.gov/share



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7, 34 -- Subject: EBSD: High-alloy austenitic steel sample prep
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From: larry.stoter-at-gmail.com
Date: Thu, 15 Sep 2011 01:20:19 -0500
Subject: [Microscopy] Re: EBSD: High-alloy austenitic steel sample prep

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Finish with an electro-chemical polish?

Dilute HCl (10%?) and ~15 V

I've never used for EBSD but have used for preparing TEM & SEM samples. Mirror-like defect free finish.

Larry Stoter
(Working on a Microsoft-free computer)

On 14 Sep 2011, at 12:21, parishcm-at-ornl.gov wrote:

}
}
}
} ----------------------------------------------------------------------------
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} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Greetings,
}
} Has anyone tried EBSD of high-Ni, high-Co Fe-based austenitic alloys? Our SEM only has one free time block between now and the project's end at end of fiscal year Sep 30, so I want to maximize my chances of getting good patterns for our one shot.
}
} Can anyone recommend a final polish recipe? I'm leaning towards a multi-hour colloidal silica finish, but if anyone had good advice I would appreciate it.
}
} Thanks,
} Chad
}
} ---------------------
} Chad M. Parish, Ph.D.
} Microscopy Group
} Materials Science and Technology Division
} Oak Ridge National Laboratory
} Phone: 1 865 574 0092
} Email: parishcm-at-ornl.gov
} Web: www.ornl.gov/share
}
}
}
} ==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 15 Sep 2011 08:18:19 -0500
Subject: [Microscopy] viaWWW: Position open Laboratory Technician

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From: frank_karl-at-ardl.com
Date: Thu, 15 Sep 2011 09:06:22 -0500
Subject: [Microscopy] Re: EBSD: High-alloy austenitic steel sample prep

Contents Retrieved from Microscopy Listserver Archives
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EBSD requires more than a mirror like finish. An ultra fine polish with silica is needed. I've sent samples out with a 1um diamond mirror finish and got terrible results.
just my 2cents

-----Original Message-----
X-from: larry.stoter-at-gmail.com [mailto:larry.stoter-at-gmail.com]
Sent: Thursday, September 15, 2011 2:34 AM
To: Frank Karl

Finish with an electro-chemical polish?

Dilute HCl (10%?) and ~15 V

I've never used for EBSD but have used for preparing TEM & SEM samples. Mirror-like defect free finish.

Larry Stoter
(Working on a Microsoft-free computer)

On 14 Sep 2011, at 12:21, parishcm-at-ornl.gov wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Greetings,
}
} Has anyone tried EBSD of high-Ni, high-Co Fe-based austenitic alloys? Our SEM only has one free time block between now and the project's end at end of fiscal year Sep 30, so I want to maximize my chances of getting good patterns for our one shot.
}
} Can anyone recommend a final polish recipe? I'm leaning towards a multi-hour colloidal silica finish, but if anyone had good advice I would appreciate it.
}
} Thanks,
} Chad
}
} ---------------------
} Chad M. Parish, Ph.D.
} Microscopy Group
} Materials Science and Technology Division
} Oak Ridge National Laboratory
} Phone: 1 865 574 0092
} Email: parishcm-at-ornl.gov
} Web: www.ornl.gov/share
}
}
}
} ==============================Original Headers==============================
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} 7, 34 -- From: "Parish, Chad M." {parishcm-at-ornl.gov}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 15 Sep 2011 14:08:48 -0500
Subject: [Microscopy] viaWWW:NESM Fall Meeting - October 20th

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Email: nesmicroscopy-at-gmail.com Name: NESM

Organization: New England Society for Microscopy

Title-Subject: [Filtered] SAVE-THE-DATE: NESM Fall Meeting - October 20th

Message: NESM FALL MEETING - October 20, 2011

Hello Microscopy ListServerites,

Save-the-Date: October 20th
For the upcoming New England Society for Microscopy's
Fall Meeting -at- Center for Biological Imaging, Harvard University Cambridge

Thursday, October 20 -- Workshops (1:30PM-4:00PM) and Dinner Meeting (4:00PM-9:00PM)

Registration information will be distributed in the coming week...

Tentative Meeting Schedule:
1:30-2:00 Workshop registration at the Center for Biological Imaging (CBI) 2:00-4:00 Workshops:
X-ray MicroCT, CARS, and Super Resolution SI/PAL-M 4:00-5:00 Meeting registration and tour of CBI
(including refreshments) 5:30-6:30 "The Human Connectome Project", Jeff Lichtman, Ph.D., Harvard
University (http://www.humanconnectomeproject.org/) 6:30-7:30 Dinner 7:45-8:45 "Super Resolution
Light Microscopy: Structured Illumination and PAL-M", Bernhard Goetze, Ph.D., Zeiss

Workshop Cost (workshops will run concurrently, so you may attend only one with space limited to 4
people per workshop)
$15 All Members

Dinner Meeting Costs (including refreshments, dinner and two talks starting at 5:30PM):
$20 NESM Members
$45 Nonmembers (includes 2012-year membership)
$10 Students
$10 Retirees
Walk-ins: Additional $5

Bring A Colleague:
NESM members who bring two new members to join during 2012, will receive free membership for 2013!!!

Thank you for your attention and consideration; and we look forward to seeing you in October.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 15 Sep 2011 14:09:51 -0500
Subject: [Microscopy] viaWWW:SEM reliability experience, service contracts

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Email: gunter.moeller-at-arkema.com

Name: Gunter Moeller

Organization: ARKEMA Inc.

Title-Subject: [Filtered] SEM reliability experience, service contracts

Message: Guys,

We are planning to purchase a new SEM this year and many of you are probably much more experienced
in SEM than I am.

Instruments we are considering are:
- JEOL JSM-7001F (formerly 6701F)
- JEOL JSM-7600F
- Carl Zeiss SIGMA
- Carl Zeiss SUPRA
- Hitachi SU8000 series (SU8010)
- FEI Inspect F50 FEG

I was wondering if you would like to share information regarding reliability and any other
noteworthy experiences with these or similar instruments.
We also would appreciate information regarding the timeliness and quality of service provided. We
will purchase a service contract. We are located in PA. We do high and low mag work with EDS and
most of our samples are polymers.
You can reach me also at: 610-878-6384 or at gunter.moeller-at-arkema.com

Thank you,
Gunter
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 15 Sep 2011 15:43:44 -0500
Subject: [Microscopy] viaWWW:calculating LN2 cost

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Email: ressl006-at-umn.edu

Name: Alice Ressler

Organization: University of Minnesota Characterization Facility

Title-Subject: [Filtered] calculating LN2 cost
Message: When ordering or pricing supplies how does your lab factor in the costs for acquiring,
obtaining and moving tanks of LN2 when calculating a per liter cost to users?

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From: delannoy-at-jhmi.edu
Date: Fri, 16 Sep 2011 08:04:16 -0500
Subject: [Microscopy] semi-thin nerve sections uneven staining

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Hello List servers,
We have a problem with 0.5 um semi-thin nerve sections processed for standard EM (immersion fixed, reduced osmium). Basically the center of the axon bundle stains lighter than the rest of the tissue with methylene blue azure 2 borate. Is this a fixation or infiltration (Parts epon to propylene oxide) problem? Seems like they section well but
I am guessing uneven cutting where the centers are lighter. Any thoughts??

Michael Delannoy.


==============================Original Headers==============================
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From: PhillipsT-at-missouri.edu
Date: Fri, 16 Sep 2011 08:16:10 -0500
Subject: [Microscopy] semi-thin nerve sections uneven staining

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Michael - I am not sure I buy the uneven cutting hypothesis but it is easy to check. Trim the edges off a block and see if the center now stains differently. Or cut the section at 1.0 um thickness and see if the middle region looks better. My experience with other types of tissue is that regions of semi-thin sections that stain poorly with toluidine blue are poorly fixed. In a few cases it has resulted from bad polymerization. If the problem is really fixation or embedding, I don't think cutting thicker sections will help as much as one would predict based on well-fixed and embedded tissues. Good luck. Tom

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: delannoy-at-jhmi.edu [mailto:delannoy-at-jhmi.edu]
Sent: Friday, September 16, 2011 8:05 AM
To: Phillips, Thomas E.

Hello List servers,
We have a problem with 0.5 um semi-thin nerve sections processed for standard EM (immersion fixed, reduced osmium). Basically the center of the axon bundle stains lighter than the rest of the tissue with methylene blue azure 2 borate. Is this a fixation or infiltration (Parts epon to propylene oxide) problem? Seems like they section well but
I am guessing uneven cutting where the centers are lighter. Any thoughts??

Michael Delannoy.


==============================Original Headers==============================
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From: frank.macaluso-at-einstein.yu.edu
Date: Fri, 16 Sep 2011 09:44:32 -0500
Subject: [Microscopy] semi-thin nerve sections uneven staining

Contents Retrieved from Microscopy Listserver Archives
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Hi Michael,
I agree with Thomas' suggestion that the uneven methyline blue staining is due to poor fixation. In my experience, it is due to incomplete osmium penetration throughout the tissue.
Frank

Frank Macaluso
Administrative Director and
Director of Electron Microscopy
Analytical Imaging Facility
Albert Einstein College of Medicine
1300 Morris Park Avenue
Bronx, NY 10461

frank.macaluso-at-einstein.yu.edu
http://www.einstein.yu.edu/aif


________________________________________
X-from: delannoy-at-jhmi.edu [delannoy-at-jhmi.edu]
Sent: Friday, September 16, 2011 9:17 AM
To: Frank P Macaluso

Hello List servers,
We have a problem with 0.5 um semi-thin nerve sections processed for standard EM (immersion fixed, reduced osmium). Basically the center of the axon bundle stains lighter than the rest of the tissue with methylene blue azure 2 borate. Is this a fixation or infiltration (Parts epon to propylene oxide) problem? Seems like they section well but
I am guessing uneven cutting where the centers are lighter. Any thoughts??

Michael Delannoy.


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From: maloneyb10-at-gmail.com
Date: Fri, 16 Sep 2011 10:55:22 -0500
Subject: [Microscopy] LM -need short ocular lens

Contents Retrieved from Microscopy Listserver Archives
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Dear Group - I have a camera lucida attached to the vertical tube on a
trinocular compound microscope.  I need an ocular lens that is 41 mm
in length and 24mm wide.
Any suggestions would be great.
Thank you.
Barbara


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From: m.stephenson-at-Vanderbilt.Edu
Date: Fri, 16 Sep 2011 13:20:58 -0500
Subject: [Microscopy] Re: semi-thin nerve sections uneven staining

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Greetings Michael. We have seen similar problems in semi-thin cross sections of oriented mouse nerve and rat spinal cord (too big to be allowed!). We have achieved consistent success by extending our standard secondary fixation of 1 hour at room temperature on a rotator with 1% buffered osmium tetroxide. Instead we rotate at room temperature for 2 hours, exchange with fresh osmium solution and leave the nerve samples in osmium in the refrigerator for 24 hours. Samples are then brought to room temperature, given 3 buffer rinses and processed per normal protocol.

The sooner the secondary fixation follows the primary fixation, the better, but we have gotten good results from samples that have been in fix for a week or more. Good luck!

Yours,
Matt

Matthew Stephenson
Cell Imaging Shared Resource (CISR)
Vanderbilt University Medical Center
(615) 322-5965; 343-6691
m.stephenson-at-vanderbilt.edu


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From: maloneyb10-at-gmail.com
Date: Fri, 16 Sep 2011 14:46:53 -0500
Subject: [Microscopy] Need a short ocular lens for Camera lucida

Contents Retrieved from Microscopy Listserver Archives
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Dear Group: I apologize, should have given additional information. I
have a Westover trinocular compound microscope and a camera lucida
that did not come with the scope. Any ocular seems to fit in the
vertical tube, however, when folding the camera lucida over the ocular
lens, it doesn't sit flat and need a shorter ocular lens. Any
suggestions would be greatly appreciated.
Thanks
Barbara

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 19 Sep 2011 08:14:25 -0500
Subject: [Microscopy] viaWWW:Looking for a veteran electron microscopist

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Email: scopes.master-at-gmail.com Name: Hamid R. Shakeri

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Title-Subject: [Filtered] Looking for a veteran electron microscopist

Message: Hi, looking for a gentlemen named Jan Englich (not sure of spelling). He used to work at
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From: dcristofori-at-unive.it
Date: Mon, 19 Sep 2011 08:42:16 -0500
Subject: [Microscopy] SEM - filament heating current (reprised)

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Dear Listers,
at the beginning of August I posted about a problem of the filament
heating current in our SEM Jeol JSM-5600LV.
It has turned out that problem is due to a damage in the High Voltage
cable.
So I'm wondering if anyone of you has such a cable which is not used and
which could be sold to us, e.g. from a dismissed instrument. Quite
improbable, I know, but never say never :)
Anyone with something potentially useful for our instrument, please mail me.
Thanks

Davide


~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

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From: mcauliff-at-umdnj.edu
Date: Mon, 19 Sep 2011 08:48:13 -0500
Subject: [Microscopy] Re: semi-thin nerve sections uneven staining

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I agree with Thomas and Frank, poor fixation in the center of the
specimen and/or poor penetration by osmium or less for the osmium to stain.

Geoff

On 9/16/2011 9:05 AM, delannoy-at-jhmi.edu wrote:
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} Hello List servers,
} We have a problem with 0.5 um semi-thin nerve sections processed for standard EM (immersion fixed, reduced osmium). Basically the center of the axon bundle stains lighter than the rest of the tissue with methylene blue azure 2 borate. Is this a fixation or infiltration (Parts epon to propylene oxide) problem? Seems like they section well but
} I am guessing uneven cutting where the centers are lighter. Any thoughts??
}
} Michael Delannoy.
}
}
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--
--
**********************************************
Geoff McAuliffe, Ph.D.
Neuroscience and Cell Biology
Robert Wood Johnson Medical School
675 Hoes Lane, Piscataway, NJ 08854
voice: (732)-235-4583
mcauliff-at-umdnj.edu
**********************************************



==============================Original Headers==============================
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From: protrain-at-emcourses.com
Date: Mon, 19 Sep 2011 09:28:26 -0500
Subject: [Microscopy] SEM - filament heating current (reprised)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

May I suggest you take a look at organisations that deal with other types of
high voltage systems, x-ray sets etc? I have found, working around the
world, that organisations other than the instrument manufacturer are quite
capable of renewing HV cables.

If you let them have your cable they will take the cable ends and fit them
to a new cable and things will be as good as new.

Good luck

Steve

Steve Chapman FRMS
Senior Consultant Protrain
For consultancy and training in electron microscopy world wide
Tel +44 (0)1280 816512 Fax +44 (0)1280 814007 Cell +44 (0)7711 606967
www.emcourses.com



-----Original Message-----
X-from: dcristofori-at-unive.it [mailto:dcristofori-at-unive.it]
Sent: 19 September 2011 14:43
To: protrain-at-emcourses.com

Dear Listers,
at the beginning of August I posted about a problem of the filament
heating current in our SEM Jeol JSM-5600LV.
It has turned out that problem is due to a damage in the High Voltage
cable.
So I'm wondering if anyone of you has such a cable which is not used and
which could be sold to us, e.g. from a dismissed instrument. Quite
improbable, I know, but never say never :)
Anyone with something potentially useful for our instrument, please mail me.
Thanks

Davide


~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

==============================Original Headers==============================
6, 19 -- From dcristofori-at-unive.it Mon Sep 19 08:42:16 2011
6, 19 -- Received: from algol.unive.it (algol.unive.it [157.138.1.8])
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{dcristofori-at-unive.it}
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==============================Original Headers==============================
21, 23 -- From protrain-at-emcourses.com Mon Sep 19 09:28:26 2011
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21, 23 -- Subject: RE: [Microscopy] SEM - filament heating current (reprised)
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From: vray-at-partbeamsystech.com
Date: Mon, 19 Sep 2011 12:49:49 -0500
Subject: [Microscopy] Re: SEM - filament heating current (reprised)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

David,

Earlier this year we were forced to develop capability of custom-making
high voltage cables for 50KV service and molding silicone connectors on
them.

http://www.freudlabs.com/micrion_fib_spare_parts

I would welcome opportunity to apply this technology to HV cables for
other FIB/SEM systems. Cost of making just one cable of the new type can
get high because of the need to design and make molds for it, but in any
case it is likely to remain far more affordable then purchase of the new
SEM.

Fell free to get in touch, if you will want to explore this possibility.

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 9/19/2011 9:42 AM, dcristofori-at-unive.it wrote:
} ----------------------------------------------------------------------------
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} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Dear Listers,
} at the beginning of August I posted about a problem of the filament
} heating current in our SEM Jeol JSM-5600LV.
} It has turned out that problem is due to a damage in the High Voltage
} cable.
} So I'm wondering if anyone of you has such a cable which is not used and
} which could be sold to us, e.g. from a dismissed instrument. Quite
} improbable, I know, but never say never :)
} Anyone with something potentially useful for our instrument, please mail me.
} Thanks
}
} Davide
}
}
} ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
} Davide Cristofori
}
} direct phone = 041.234.67.26
} e-mail = dcristofori[at]unive[dot]it
}
} Universita' Ca' Foscari Venezia
} Dipartimento di Sc. Molecolari e Nanosistemi
} Lab. di Scienza e Tecnologia dei Materiali
} Via Torino, 155b
} I-30172 Mestre (VE)
} Italy
} ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
}
} ==============================Original Headers==============================
} 6, 19 -- From dcristofori-at-unive.it Mon Sep 19 08:42:16 2011
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From: donovan-at-uoregon.edu
Date: Mon, 19 Sep 2011 14:21:28 -0500
Subject: [Microscopy] MicroAnalytical Research Assistant Search

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The following position is now open for applications at the CAMCOR
shared user facility at the University of Oregon.

http://camcor.uoregon.edu/

Please contact John Donovan for details.

mailto:donovan-at-uoregon.edu

The MicroAnalytical Research Assistant position provides professional
technical and scientific assistance to support the CAMCOR
MicroAnalytical laboratory and associated Inorganic Sample
Preparation Laboratory under the direction and instruction of the
MicroAnalytical Facility Director. As an entry level position, the
MicroAnalytical Research Assistant will be expected to learn all
necessary techniques and methods through self-instruction, tutoring,
classes, professional development, scientific conferences, and other
educational opportunities as available.

The MicroAnalytical Research Assistant will be expected to maintain
the instrument laboratory and sample preparation areas, prepare
samples of a geological, materials and archeological nature using a
variety of sample preparation techniques. The MicroAnalytical
Research Assistant will also operate optical and stereo microscopes
and perform qualitative and quantitative analysis using a scanning
electron microscope (FEI Quanta FEG SEM) and two electron probe micro
analysis instruments (Cameca SX50 EPMA and SX100 EPMA).

The MicroAnalytical Research Assistant will also provide assistance,
supervision and instruction for students, faculty and commercial
visitors using the shared laboratories, optical microscopes,
computers, scanners and other shared laboratory equipment. The
MicroAnalytical Research Assistant will provide computer backup and
file sharing maintenance and support for the MicroAnalytical
Facility. Complete details and application procedure at
http://academicjobsonline.org.

Duties:
Sample Preparation/Coating/Sputtering:

50% Sample Preparation for MicroAnalytical Facility: Cutting,
grinding, cleaving, mounting, embedding, and polishing and coating of
a wide variety of samples for use in the Microanalytical Facility.
Both grain mounts, polished thick and thin sections and standard
materials for calibration of the instruments. Vibratory polishing and
etching for EBSD samples. Coating using a variety of sputter and
evaporation coaters.

Sample preparation using tripod polishing, ultra-microtome, FIB and
Electron Beam Lithography will also be required on occasion.

Instrument operation for MicroAnalytical:

30% Instrument Operation for MicroAnalytical Facility: Operate
variable pressure FEG SEM and electron microprobes for imaging,
mapping and quantitative analysis on a wide variety of samples and
materials including thin films, archeological samples, geological
samples, and photo-voltaic, semi-conductor, thermo-electric, super
conductor and other bulk materials.

Operate energy dispersive spectrometers (EDS), electron backscatter
detector (EBSD), cathodo-luminescence (CL) and utilize Peltier cold
and hot stages for in-situ SEM experiments.

General facility support and assistance:

10% Computer Backup and Laboratory Maintenance: Manage instrument and
shared computers in MicroAnalytical facility. Perform operating
system updates, anti-virus updates, file maintenance, access
security, user management on secure data servers, purchase parts and
consumables for the MicroAnalytical Facility and Inorganic
Preparation Laboratory as needed. Work with on-site instrument
engineer and electronic engineer as necessary to assist in
maintaining all laboratory equipment.

10% Tours, Workshops and Outreach: Conduct technical tours of the
facility for community, industry, prospective student and other
visitors. Support middle and high school and community college
outreach efforts. Organize and support semi-annual workshops and
topical conferences for the MicroAnalytical Facility. Other duties as assigned.

Qualifications: Bachelor's degree in a science related field and
three years of experience in a laboratory and microscopy related
field or Master's degree in a science related field and one year
experience in a laboratory and microscopy related field.

Preferred ability in:
Experience in sample preparation for EPMA and SEM, including epoxies,
adhesives, vacuum impregnation, hot plate mounting with Petropoxy,
thin sectioning, polishing with water/alcohol based diamond abrasives.

Operation of metallic/carbon evaporators and sputter coaters, fume
hoods, spinners, etchers, and knowledge of proper handling and
storing of chemicals.

Technical/scientific programming and computing management and
applications. Norton Ghost for automated backup of data storage.

Demonstrated ability in:
Following prescribed procedures, communicate effectively verbally and
in writing.

Providing efficient and professional laboratory assistance in a fast
paced environment. Effectively managing and prioritizing competing
demands and keeping shared laboratory facilities at high levels of
organization, cleanliness and safety levels. Absorbing a high level
of technical details quickly.

The successful candidate will have the ability to work effectively
with faculty, staff and students from a variety of diverse backgrounds.

Salary: Salary will be commensurate with qualifications and
experience. This is a 0.5 FTE position. There is the possibility that
the FTE may increase in the future depending on funding, performance
and departmental need.

Application: http://academicjobsonline.org

Please include contact information for three professional references.
Review of applications will begin September 27, 2011, and continue
until a sufficient pool of qualified applicants is obtained or until
the position is filled. This announcement is available in alternate
formats upon request. If you are a qualified applicant with a
disability and need accommodation with the application process,
please call (541) 346-3159. If you need accommodation for the
interview, please notify the Business Affairs Office if an interview
is scheduled.

An Equal-Opportunity, Affirmative-Action Institution Committed to
Cultural Diversity and Compliance with the Americans with Disabilities Act.

John Donovan
Director- Microanalytical Facility
CAMCOR-UofO
541-346-4632
donovan-at-uoregon.edu
www.camcor.uoregon.edu
www.epmalab.uoregon.edu


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From: garnet.martens-at-botany.ubc.ca
Date: Mon, 19 Sep 2011 16:03:55 -0500
Subject: [Microscopy] LN2 cost

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Alice,

We used to charge out to our users for LN2 usage and determined that if we charged for less than 10 litres (up to 10 litres) we lost money. Funny enough people stopped asking for LN2.

We average a certain amount per day for our instruments and spread that cost over the range of instrument and our users do not see that amount on their bill. Some days we lose a little money and others we make money.

We got out of the nickel and dime charging a few years ago and it really streamlined our accounting.

Good luck.

Garnet

--
Garnet Martens
Research Manager
BioImaging Facility
6270 University Blvd
Vancouver, BC
V6T 1Z4
CANADA

gmartens-at-interchange.ubc.ca
www.emlab.ubc.ca
604-822-3354












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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 19 Sep 2011 21:53:36 -0500
Subject: [Microscopy] viaWWW:X-Ray Diffraction Book

Contents Retrieved from Microscopy Listserver Archives
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Email: parmiterd-at-mail.nih.gov Name: David

Organization: SAIC-Frederick

Title-Subject: [Filtered] X-Ray Diffraction Book

Message: Hello -

I'd like to know if anyone can recommend me a book on X-Ray diffraction. Specifically I'm looking
for something that would include an index of d-values and such.

While I know there are archives which are constantly updated available through various groups, this
is not something that I have a couple thousand dollars to spend on, and it is not 100% necessary for
it to be 100% up-to-date.

Any help which can be offered will be appreciated.

Thanks!

- David

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 20 Sep 2011 22:16:41 -0500
Subject: [Microscopy] viaWWW:TEM position available Univ. Notre Dame

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Email: kosel-at-nd.edu Name: Tom Kosel

Organization: Univ. Notre Dame

Title-Subject: [Filtered] TEM position available

Message: Hello -

A position is available for a TEM operator/manager for the FEI Titan 80-300 at Notre Dame, as
described below. Please use the web addresses below, rather than replying to me.

Tom Kosel
University of Notre Dame

Lab Manager for Transmission Electron Microscopy within the Notre Dame Integrated Imaging
Facility



The University of Notre Dame has recently established the Integrated Imaging Facility with an
integrated suite of state-of-the-art optical microscopes, electron beam microscopes, and small
animal imaging stations. To learn more about the facility, visit http://ndiif.nd.edu. We seek a lab
manager for the newly acquired FEI Titan 80-300 transmission electron microscope, equipped with EDS
and EELS (Gatan Imaage Filter). It is a non-tenure position with renewable 12-month appointments.
The successful candidate will have a strong publication record and considerable experience operating
transmission electron microscopes. The position involves extensive collaboration with various
research groups in the Colleges of Science and Engineering, and also the possibility of independent
research. Ongoing research includes TEM of cross-sectional semiconductor specimens, nanoparticles
and nanowires, graphene, etc. Biological TEM is done by an existing staff member. Complete
specimen preparation facilities for materials science include an FEI Helios focused-ion beam (FIB)
as well as ion milling, wedge polishing etc.

Please apply online at http://ND.jobs to Job #11437 or visit
http://jobs.nd.edu/applicants/Central?quickFind=57475. For additional information about working
at the University of Notre Dame and various benefits available to employees, please visit
http://hr.nd.edu/why-nd.

The University of Notre Dame is committed to diversity (http://diversity.nd.edu/) in its staff,
faculty, and student body. As such, we strongly encourage applications from members of minority
groups, women, veterans, individuals with disabilities, and others who will enhance our community.
The University of Notre Dame, an international Catholic research university, is an equal
opportunity/affirmative action employer.




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From: dcristofori-at-unive.it
Date: Wed, 21 Sep 2011 13:20:30 -0500
Subject: [Microscopy] SEM - filament heating current (reprised)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi everybody,
and thank you for the suggestions.

-at- Steve: unfortunately the problem is, at least, a cracked end. Maybe
also a damage in an electric line inside the cable, but for sure a big
crack in the teflon end.

-at- Justin and Steve: however, if not able to find a spare part, your
suggestions will be very useful.

-at- Valery: at the moment we're not yet so discouraged to think of
purchasing a new SEM. But before getting like that, we'll get in touch
with you.


Davide


~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 21 Sep 2011 19:46:51 -0500
Subject: [Microscopy] viaWWW:Head, Histology and Electron Microscopy position open

Contents Retrieved from Microscopy Listserver Archives
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Email: tjj-at-stowers.org Name: Teri Johnson

Organization: Stowers Institute for Medical Research

Title-Subject: [Filtered] Head, Histology and Electron Microscopy position open

Message: The Stowers Institute for Medical Research has an opening for a Head of Histology and
Electron Microscopy to oversee expert delivery of the highest quality service for the detection of
gene and protein expression in tissue samples; histochemical staining; sample fixation; routine
histology; and ultra-structural analysis.

Primary responsibilities include maintaining the current status of projects and resolving issues
in the EM and Histology labs; actively promoting team interaction and participation; monitoring
workload and turn-around time through the LIMS system; providing oversight and feedback on complex
or non-routine projects; monitoring usage of services; responding appropriately to unexpected peaks
in workload and service requests; maintaining effective communication with all members of the
Institute; troubleshooting problems and communicating appropriately with Principal Investigators and
the scientific staff, administration, and other core facility personnel as needed; making formal and
informal presentations on Core Center services; ensuring continuing education of staff through
workshops, webinars, lab meetings, and email communications; and reading professional journals and
other sources to stay current in Histologic and EM techniques.

In addition to outstanding communication skills and the ability to effectively multi-task in a
team-oriented environment, the successful candidate will have QIHC (ASCP) Qualification, and HT or
HTL certification. Previous management or supervisory experience is preferred.

Minimum requirements include an undergraduate degree in the sciences; excellent knowledge of
histologic technique to include fixation, processing, histochemical staining, immunohistochemical
staining, microtomy (to include cryostat, paraffin, and plastic), and ultramicrotomy; experience in
a research environment with animal model histology; and the ability to apply good judgement to
troubleshooting, problem solving, and staff management. Five to ten years relevant Histology and/or
Electron Microscopy experience in lieu of education may be considered.

To learn more about the Institute and its mission visit www.stowers.org

To apply send resume and cover letter to careers-at-stowers.org

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 21 Sep 2011 19:47:18 -0500
Subject: [Microscopy] viaWWW:TEM Asbestos Lab Manager Position

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Email: bai-at-ceilabs.com Name: Tianbao Bai, Ph.D., CIH

Organization: Carolina Environmental, Inc.

Title-Subject: [Filtered] TEM Asbestos Lab Manager Position

Message: Hi, all.

We have a opening for our TEM asbestos lab manager position. We are located in Cary, North Carolina
by Research Triangle Park. Minimum B.S. degree, M.S. preferred. Three years of asbestos TEM lab
experiences are required. Please response directly to my email.
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From: John.Mardinly-at-asu.edu
Date: Thu, 22 Sep 2011 12:48:26 -0500
Subject: [Microscopy] Re: viaWWW:X-Ray Diffraction Book

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


The classic text I studied was by B.D. Cullity, but I suspect it is out of print and Amazon has only 10 copies left. However, if you search in Amazon on the words "X-Ray Diffraction", you will see a lot of newer texts along with reader's reviews of those texts. Beware, do it sitting down-the prices are shocking.

John Mardinly
ASU
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} Email: parmiterd-at-mail.nih.gov Name: David
}
} Organization: SAIC-Frederick
}
} Title-Subject: [Filtered] X-Ray Diffraction Book
}
} Message: Hello -
}
} I'd like to know if anyone can recommend me a book on X-Ray diffraction. Specifically I'm looking
} for something that would include an index of d-values and such.
}
} While I know there are archives which are constantly updated available through various groups, this
} is not something that I have a couple thousand dollars to spend on, and it is not 100% necessary for
} it to be 100% up-to-date.
}
} Any help which can be offered will be appreciated.
}
} Thanks!
}
} - David
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 22 Sep 2011 20:27:52 -0500
Subject: [Microscopy] viaWWW:Position Available; Need QFDE Experience

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Email: m-johnson2-at-northwestern.edu Name: Mark Johnson

Organization: Northwestern Biomedical Engineering

Title-Subject: [Filtered] Position Available; Need QFDE Experience

Message: Age-related macular degeneration (AMD) is a debilitating disease of the elderly that can
lead to blindness. Associated with this disease is an accumulation of lipids that occurs in and
around Bruch's membrane, adjacent to the retina. This project involves an ultrastructure examination
of Bruch's membrane in a mouse model of AMD to better characterize the pathogenesis of this disease.
This study is a collaborative project with Duke University.

Quick-freeze/deep-etch (QFDE) is a morphological technique that preserves extracellular matrix in
exquisite detail and allows structures , particularly lipids, to be visualized that are not well
resolved using conventional transmission electron microscopy (TEM) techniques. QFDE and other
lipid-preserving histochemical techniques will be used in this study.

Position is available for a post-doctoral research fellow (or Northwestern graduate student). Must
have experience using QFDE.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 23 Sep 2011 18:10:03 -0500
Subject: [Microscopy] viaWWW:NESM Fall Meeting Oct. 20th:

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Email: nesmicroscopy-at-gmail.com Name: NESM Board

Organization: New England Society for Microscopy

Title-Subject: [Filtered] NESM Fall Meeting Oct. 20th: Register Online Today!

Message: Hello Fellow Listserverites!

Happy First Day of Fall! What better way to bring in the new Fall season than to join NESM for our
annual Fall Meeting on Oct. 20, 2011 at The Center for Biological Imaging, Harvard University,
Cambridge. The meeting is composed of five concurrent afternoon workshops and a dinner meeting.

We are also proud to announce our new website nesmicroscopy.org! Follow the link to see more
information about our Fall Meeting. http://www.nesmicroscopy.org/

We hope to see you at the meeting!

All the best,
NESM Board

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 23 Sep 2011 18:10:26 -0500
Subject: [Microscopy] viaWWW:Nitric Acid and Methanol SOP

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Email: mlibbee-at-gmail.com Name: Marissa Mancuso

Organization: LBNL

Title-Subject: [Filtered] Nitric Acid and Methanol SOP

Message: Listers,

Does anyone have an SOP for handling Nitric Acid and Methanol (typically used in electro-polishing
TEM samples)? I help manage and maintain the spec prep labs at NCEM/LBNL and have all the
information to make an SOP for the use and neutralization procedure but if there is already one out
in the community, I'd rather reference an existing document than create it from scratch.
Thanks,
Marissa Mancuso
(formerly known as Marissa Libbee)

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 23 Sep 2011 18:10:51 -0500
Subject: [Microscopy] viaWWW:EBSD on Tabletop SEM

Contents Retrieved from Microscopy Listserver Archives
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Email: christopher.a.meyer2-at-boeing.com Name: Chris Meyer

Organization: Boeing

Title-Subject: [Filtered] EBSD on Tabletop SEM

Message: Hello,

Does anyone have experience with EBSD on a tabletop 15kV SEM? I am interested in their experience.
Is this practical? Thanks.

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From: dbagrov-at-gmail.com
Date: Sat, 24 Sep 2011 09:43:41 -0500
Subject: [Microscopy] Image processing - What is "size of a particle"?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello!
I've got a question about image processing. A very common task for a
microscopist is to measure the size of particles on a TEM image.
More generally, one needs to get the size distribution. If the
particles are round, we measure the diameter of each particle.
If the particles are elongated, we treat each particle as an ellipse
(ImageJ can do that). The question is: how we can define the term
"size" in general?
When we have a mixture of elongated particles, triangular particles,
complex shapes and others, it is rather difficult to explain what is
"size".
Could you please comment on this question or advice some
books/articles on the topic? If we treat an elongated particle as an
ellipse, how to estimate the error?
--
Sincerely yours,
Dmitry Bagrov

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1, 23 -- Subject: Image processing - What is "size of a particle"?
1, 23 -- From: Dmitry Bagrov {dbagrov-at-gmail.com}
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From: jrminter-at-rochester.rr.com
Date: Sat, 24 Sep 2011 13:19:27 -0500
Subject: [Microscopy] Re: Image processing - What is "size of a particle"?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dmitry brings up a good point. Those of us in the lab involved in particle characterization by image analysis and other techniques often note the problem where our clients want a single number to describe a complex distribution of particles which vary in projected area and shape. We call it "mono-numerosis."

Even for something as simple as spheroidal particles, we will typically measure at least 1000 single particles (see below for some comments about agglomerate rejection) and plot the distribution of equivalent circular diameters. We typically compare these measured distributions to model normal or lognormal distributions. The broader the distribution, the more particles one needs to measure to get precise parameters for the distribution. See Masuda and Inoye, J. Chem Eng. Jpn,, 4(1), 60-66 (1971).

We have looked at edge rounding of silver halide grains by TEM. We have a model that fits the projected particle boundary to a model of a super-sphere. Anytime one fits a measured boundary to a model shape, one should always examine the residuals from the fit and account for the large discrepancies. We have also fit particle boundaries to a model eclipse. Again, we look at the fit residuals. We have also looked at particles of varying shapes (including triangles.) Computing Fourier Shape Descriptors helps here. See E. T. Bowman et al, Geotechnique, 51(6), 545-554 (2001)

The general problem comes down to measuring a "feature vector" for each "blob" the image analysis algorithm detects. One then needs to do some classification analysis to sort out errors and then classify the "single particles" by size and shape.

For us, the first step is usually rejection of agglomerates. Most single particles are "convex" - meaning no re-entrant segments. We typically compute the "maximum intrusion distance" by finding the closest point on the convex hull for each point on the "blob" boundary and then finding the point on the boundary with the largest distance to the convex hull. This is the maximum intrusion distance. This provides very reliable agglomerate detection.

Once we have rejected agglomerates, we look at the rest of the items in the "feature vector" measured for each blob. These quantities might be the equivalent circular diameter, some generic shape factors like the circularity, perhaps the ratio of Feret diameters, and some Fourier Shape Descriptors or some Gray Level Moments (see Hu, IRE Trans Info Theo, 8, 179-187 (1962) and Belksim et al., Pattern Recognition, 24(12), 1117-38 (1991) and Gonzalez and Woods, Digital Image Processing, 514-518 (1993)).

With a new problem, we typically make some training sets of particles that we think represent the different classes and look at the differences between and within the classes for elements in the feature vector to come up with some proposed classifiers. This generally involves a bit of work looking at scatter plots of proposed classifiers for the different training set classes.

I should note that we use the AnalySIS Five image processing software from Olympus-SIS. I have no financial interest in this other than being a satisfied customer. We have done a lot of custom programming to get the feature measures we need. Often measurements are computationally-intensive and once we have verified that a protype Imaging-C module works, we will move the
computationally-intensive functions into a DLL that has been compiled with an optimizing compiler and use the functions in the wrapper Imaging-C modules.

Hope this helps.

Best Regards,
John
On Sep 24, 2011, at 10:43 AM, dbagrov-at-gmail.com wrote:
} Hello!
} I've got a question about image processing. A very common task for a
} microscopist is to measure the size of particles on a TEM image.
} More generally, one needs to get the size distribution. If the
} particles are round, we measure the diameter of each particle.
} If the particles are elongated, we treat each particle as an ellipse
} (ImageJ can do that). The question is: how we can define the term
} "size" in general?
} When we have a mixture of elongated particles, triangular particles,
} complex shapes and others, it is rather difficult to explain what is
} "size".
} Could you please comment on this question or advice some
} books/articles on the topic? If we treat an elongated particle as an
} ellipse, how to estimate the error?
} --
} Sincerely yours,
} Dmitry Bagrov



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From: Barrie.Wells-at-ConwyValley.com
Date: Sun, 25 Sep 2011 06:25:43 -0500
Subject: [Microscopy] Re: Image processing - What is "size of a particle"?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This question (how to characterise particle size) is, at one level, no
different to any other exercise in statistical summary: how to give as much
information as possible with just one number (statistically, the first
moment, or mean), or with just two numbers (first and second moments - mean
and standard deviation), or with just three numbers (the first three
moments, or mean, standard deviation and kurtosis), etc.

I appreciate that in saying this I am merely restating one of the many
salient points made by John Minter but I think it is worth re-stating, as
being arguably the last common ancestor before it is necessary to branch
into domain-specific answers. JM gives a summary of one domain, to which it
may be useful to add a summary for sedimentary petrography and optical
microscopy.

Particle shape is most often of interest to petrographers not for the
particles themselves but for understanding the void space between.
Therefore, packing is usually the most important single parameter (first
moment), for which size is little more than a proxy. Hence the equivalents
to JM's single parameters are measures such as points on the scales of
Krumbein, Rittenhouse, Harrel, Powers or Pilkey. These were developed when
analysis was purely visual, with no computational aids. Measuring angles and
lengths was a time-consuming process. Does that mean they are redundant now
that we can quickly click on many points on an image of representative
grains and hence calculate any number of moments of the particle size
distribution? Not if we return to Dmitry's question: how to summarise the
important characteristics of size and shape in a heterogeneous sample, using
just one or two numbers. These comparator charts were developed by Krumbein
and others not only because it was not easy to enumerate a representative
sub-population of particles, or calculate their distribution, but also
because they are good ways of describing the distribution: in effect, they
are domain-specific first moments.

So, in summary, I believe that the answer to Dmitry's question is
domain-specific, wherein again I am only repeating JM's contribution. But
the next step is to ask the question: to what extent does this 2-D slice
through a 3-D medium capture the information the end-user is seeking?
Staying with sedimentary petrography, a key piece of information is pore
connectivity, and hence the shape and size of pore throats. What can a 2D
slice tell us about this? Robert Ehrlich has spent a large part of his life
studying this and has provided an extensive literature that can be readily
searched, and which it would be presumptuous of me to even try to summarise,
but I believe it is an interesting question whether or not one is a
petrographer.

Finally, one of the main reasons I subscribe to this newsgroup is to read
the comments of workers in other application domains. Sometimes, what is
routine in one area can be a new insight in another, so thanks to all those,
like JM below, who take the time to answer questions.

Barrie Wells


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Date: Sun, 25 Sep 2011 09:52:20 -0500
Subject: [Microscopy] viaWWW:What is "size of a particle"?

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Email: dbagrov-at-gmail.com Name: Mr. Dmitry Bagrov

Organization: Moscow State University

Title-Subject: [Filtered] What is "size of a particle"?

Message: Hello!
I've got a question about image processing. A very common task for a microscopist is to measure the
size of particles on a TEM image. More generally, one needs to get the size distribution. If the
particles are round than we claim that we mesure the diameter of each particle. Sometimes we can
treat each particle as an ellipse (ImageJ can do that). The question is: how we can define the term
"size" in general? When we have a mixture of elongated particles, triangular particles, complex
shapes and others, it is rather difficult to explain what is "size". Could you please comment on
this question or advice some books/articles on the topic?

Login Host: 188.123.245.134
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From: vic555-at-gmail.com
Date: Sun, 25 Sep 2011 17:33:40 -0500
Subject: [Microscopy] Tempered/Untempered Martensite

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Hi all,

Is there any way to distinguish between tempered and untempered
martensite (in steels) from selected area diffraction? Are the
d-spacings or hkl tell anything?

Please help!
Vikram

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From: dbagrov-at-gmail.com
Date: Mon, 26 Sep 2011 01:29:09 -0500
Subject: [Microscopy] Image processing - What is "size of a particle"?

Contents Retrieved from Microscopy Listserver Archives
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Hello!
Many thanks to everyone who answered my question, I highly appreciate your help!
Although the procedure of particle size measurement seems simple, it
is very difficult to measure the sizes accurately. Since the task is
extremely common, many of us face this problem of image
processing/metrology. As for me, I come to understanding that I always
have to keep in mind the accuracy of measurement that I need. E.g. if
the desired accuracy is not too high, I can treat a hexagonal particle
as an ellipse without loss of reliability.
Thanks everyone!
--
Sincerely yours,
Dmitry Bagrov




2011/9/25 {Barrie.Wells-at-conwyvalley.com} :
}
}
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}
} This question (how to characterise particle size) is, at one level, no
} different to any other exercise in statistical summary: how to give as much
} information as possible with just one number (statistically, the first
} moment, or mean), or with just two numbers (first and second moments - mean
} and standard deviation), or with just three numbers (the first three
} moments, or mean, standard deviation and kurtosis), etc.
}
} I appreciate that in saying this I am merely restating one of the many
} salient points made by John Minter but I think it is worth re-stating, as
} being arguably the last common ancestor before it is necessary to branch
} into domain-specific answers. JM gives a summary of one domain, to which it
} may be useful to add a summary for sedimentary petrography and optical
} microscopy.
}
} Particle shape is most often of interest to petrographers not for the
} particles themselves but for understanding the void space between.
} Therefore, packing is usually the most important single parameter (first
} moment), for which size is little more than a proxy. Hence the equivalents
} to JM's single parameters are measures such as points on the scales of
} Krumbein, Rittenhouse, Harrel, Powers or Pilkey. These were developed when
} analysis was purely visual, with no computational aids. Measuring angles and
} lengths was a time-consuming process. Does that mean they are redundant now
} that we can quickly click on many points on an image of representative
} grains and hence calculate any number of moments of the particle size
} distribution? Not if we return to Dmitry's question: how to summarise the
} important characteristics of size and shape in a heterogeneous sample, using
} just one or two numbers. These comparator charts were developed by Krumbein
} and others not only because it was not easy to enumerate a representative
} sub-population of particles, or calculate their distribution, but also
} because they are good ways of describing the distribution: in effect, they
} are domain-specific first moments.
}
} So, in summary, I believe that the answer to Dmitry's question is
} domain-specific, wherein again I am only repeating JM's contribution. But
} the next step is to ask the question: to what extent does this 2-D slice
} through a 3-D medium capture the information the end-user is seeking?
} Staying with sedimentary petrography, a key piece of information is pore
} connectivity, and hence the shape and size of pore throats. What can a 2D
} slice tell us about this? Robert Ehrlich has spent a large part of his life
} studying this and has provided an extensive literature that can be readily
} searched, and which it would be presumptuous of me to even try to summarise,
} but I believe it is an interesting question whether or not one is a
} petrographer.
}
} Finally, one of the main reasons I subscribe to this newsgroup is to read
} the comments of workers in other application domains. Sometimes, what is
} routine in one area can be a new insight in another, so thanks to all those,
} like JM below, who take the time to answer questions.
}
} Barrie Wells
}
}
} ==============================Original Headers==============================
} 7, 33 -- From Barrie.Wells-at-ConwyValley.com Sun Sep 25 06:25:43 2011
} 7, 33 -- Received: from moutng.kundenserver.de (moutng.kundenserver.de [212.227.17.9])
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} 7, 33 -- To: {Microscopy-at-microscopy.com}
} 7, 33 -- Cc: "Barrie Wells" {Barrie.Wells-at-ConwyValley.com}
} 7, 33 -- Subject: Re: Image processing - What is "size of a particle"?
} 7, 33 -- Date: Sun, 25 Sep 2011 12:23:25 +0100
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6, 29 -- Subject: Re: [Microscopy] Re: Image processing - What is "size of a particle"?
6, 29 -- From: Dmitry Bagrov {dbagrov-at-gmail.com}
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From: mike.bode-at-resaltatech.com
Date: Mon, 26 Sep 2011 10:00:46 -0500
Subject: [Microscopy] Image processing - What is "size of a particle"?

Contents Retrieved from Microscopy Listserver Archives
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Hi Dimitry,

You could certainly do that, but I don't understand why. You would make an a
priori assumption about the shape of the particle. The best way to do this
would be to use a calibrated image, then use a thresholding technique and
let the software give you the accurate area or circumference or a diameter
(max, min, average) of the particle. If that is not possible (for example if
the contrast between particle and matrix is too low), you could try image
enhancement techniques, or techniques developed for grain boundary analysis,
which use more information than just intensity values.

As has been pointed out by John and Barrie, "size" is not a very precise
parameter. It could mean "length" for one person, "area" for another. I
think once you have defined exactly what you want to measure, you will be
able to devise measurement techniques that give you better results. Keep in
mind also that you are typically only looking at a 2D representation of a 3D
object, and your measurements could be biased.

Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com





-----Original Message-----
X-from: dbagrov-at-gmail.com [mailto:dbagrov-at-gmail.com]
Sent: Monday, September 26, 2011 12:38 AM
To: mike.bode-at-resaltatech.com

Hello!
Many thanks to everyone who answered my question, I highly appreciate your
help!
Although the procedure of particle size measurement seems simple, it
is very difficult to measure the sizes accurately. Since the task is
extremely common, many of us face this problem of image
processing/metrology. As for me, I come to understanding that I always
have to keep in mind the accuracy of measurement that I need. E.g. if
the desired accuracy is not too high, I can treat a hexagonal particle
as an ellipse without loss of reliability.
Thanks everyone!
--
Sincerely yours,
Dmitry Bagrov




2011/9/25 {Barrie.Wells-at-conwyvalley.com} :
}
}
}
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}
} This question (how to characterise particle size) is, at one level, no
} different to any other exercise in statistical summary: how to give as
much
} information as possible with just one number (statistically, the first
} moment, or mean), or with just two numbers (first and second moments -
mean
} and standard deviation), or with just three numbers (the first three
} moments, or mean, standard deviation and kurtosis), etc.
}
} I appreciate that in saying this I am merely restating one of the many
} salient points made by John Minter but I think it is worth re-stating, as
} being arguably the last common ancestor before it is necessary to branch
} into domain-specific answers. JM gives a summary of one domain, to which
it
} may be useful to add a summary for sedimentary petrography and optical
} microscopy.
}
} Particle shape is most often of interest to petrographers not for the
} particles themselves but for understanding the void space between.
} Therefore, packing is usually the most important single parameter (first
} moment), for which size is little more than a proxy. Hence the equivalents
} to JM's single parameters are measures such as points on the scales of
} Krumbein, Rittenhouse, Harrel, Powers or Pilkey. These were developed when
} analysis was purely visual, with no computational aids. Measuring angles
and
} lengths was a time-consuming process. Does that mean they are redundant
now
} that we can quickly click on many points on an image of representative
} grains and hence calculate any number of moments of the particle size
} distribution? Not if we return to Dmitry's question: how to summarise the
} important characteristics of size and shape in a heterogeneous sample,
using
} just one or two numbers. These comparator charts were developed by
Krumbein
} and others not only because it was not easy to enumerate a representative
} sub-population of particles, or calculate their distribution, but also
} because they are good ways of describing the distribution: in effect, they
} are domain-specific first moments.
}
} So, in summary, I believe that the answer to Dmitry's question is
} domain-specific, wherein again I am only repeating JM's contribution. But
} the next step is to ask the question: to what extent does this 2-D slice
} through a 3-D medium capture the information the end-user is seeking?
} Staying with sedimentary petrography, a key piece of information is pore
} connectivity, and hence the shape and size of pore throats. What can a 2D
} slice tell us about this? Robert Ehrlich has spent a large part of his
life
} studying this and has provided an extensive literature that can be readily
} searched, and which it would be presumptuous of me to even try to
summarise,
} but I believe it is an interesting question whether or not one is a
} petrographer.
}
} Finally, one of the main reasons I subscribe to this newsgroup is to read
} the comments of workers in other application domains. Sometimes, what is
} routine in one area can be a new insight in another, so thanks to all
those,
} like JM below, who take the time to answer questions.
}
} Barrie Wells
}
}
} ==============================Original
Headers==============================
} 7, 33 -- From Barrie.Wells-at-ConwyValley.com Sun Sep 25 06:25:43 2011
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} 7, 33 -- Subject: Re: Image processing - What is "size of a particle"?
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particle"?
6, 29 -- From: Dmitry Bagrov {dbagrov-at-gmail.com}
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From: shafermr-at-whitman.edu
Date: Mon, 26 Sep 2011 12:40:05 -0500
Subject: [Microscopy] Uninterruptible Power Supply for SEM - recommendations?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We have an FEI Quanta 250 SEM. We frequently have power surges in the building and are looking to get an uninterruptible power supply (UPS) for it. We are looking at a Toshiba 1600XP series (3.6kVa). The sales rep is asking if we want it hard wired into the electrical or plugged into the wall; based on your experience, is one better than the other? Is the Toshiba a good model or are there others out there that are better?

Thanks in advance!

Michelle Shafer
Whitman College
shafermr-at-whitman.edu


==============================Original Headers==============================
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From: bigelow-at-umich.edu
Date: Mon, 26 Sep 2011 12:47:02 -0500
Subject: [Microscopy] RE:Martensite, etc.

Contents Retrieved from Microscopy Listserver Archives
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If you have specimens thin enough for selected area diffraction,
you may be able to tell the difference by examining them at high
magnification. Martensite is a single phase material, usually with
fine acicular grains. Tempered martensite is a two-phase structure
consisting usually of very fine needle-shaped Fe3C carbide particles
in a fine-grained BCC iron matrix.
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: WHITTAKS-at-si.edu
Date: Mon, 26 Sep 2011 13:17:36 -0500
Subject: [Microscopy] Uninterruptible Power Supply for SEM - recommendations?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I would be very interested in the replies to this thread. I am moving into a section of the building undergoing active construction over the next decade and was to start looking into providing UPS for my three SEMs. Hadn't even started looking yet so the timing on this is wonderful.

Thanks,


Scott Whittaker
Chief NMNH Imaging
Manager SEM Lab
Smithsonian Institution
National Museum of Natural History
PO Box 37012   MRC104
Washington DC 20013-7012
202-633-0891

{} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {} {}

Be prepared!! The Sem lab will be closing down and moving to First Floor West Wing most of the month of MARCH 2012. Dates subject to construction schedule. During that time the instrument calendars will be moved to outlook to take advantage of numerous features and improvements.

-----Original Message-----
X-from: shafermr-at-whitman.edu [mailto:shafermr-at-whitman.edu]
Sent: Monday, September 26, 2011 1:42 PM
To: Whittaker, Scott

We have an FEI Quanta 250 SEM. We frequently have power surges in the building and are looking to get an uninterruptible power supply (UPS) for it. We are looking at a Toshiba 1600XP series (3.6kVa). The sales rep is asking if we want it hard wired into the electrical or plugged into the wall; based on your experience, is one better than the other? Is the Toshiba a good model or are there others out there that are better?

Thanks in advance!

Michelle Shafer
Whitman College
shafermr-at-whitman.edu


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From: rok210-at-lehigh.edu
Date: Mon, 26 Sep 2011 13:25:10 -0500
Subject: [Microscopy] Re: Uninterruptible Power Supply for SEM - recommendations?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Michelle,

We have an FEI dual-beam FIB and use a Toshiba 1600EP UPS system (it has
12 battery packs) - installed in 2006. Among all our instruments the FIB
seems to survive the power outages better than most, so I'd say yes it
is a good model. Ours is hard-wired and met local ordinances, just now
I am replacing the batteries (after five years) - each battery pack is
quite heavy and contains six 12 volt lead-acid batteries, The batteries
are about $20 each.

Good luck

Robert Keyse

On 9/26/2011 1:49 PM, shafermr-at-whitman.edu wrote:
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} We have an FEI Quanta 250 SEM. We frequently have power surges in the building and are looking to get an uninterruptible power supply (UPS) for it. We are looking at a Toshiba 1600XP series (3.6kVa). The sales rep is asking if we want it hard wired into the electrical or plugged into the wall; based on your experience, is one better than the other? Is the Toshiba a good model or are there others out there that are better?
}
} Thanks in advance!
}
} Michelle Shafer
} Whitman College
} shafermr-at-whitman.edu
}
}
} ==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 26 Sep 2011 18:09:10 -0500
Subject: [Microscopy] viaWWW:JEOL Service

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This Question/Comment was submitted to the Microscopy Listserver
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Email: dennis-at-houstonem.com Name: Dennis Manuel

Organization: Houston Electron Microscopy

Title-Subject: [Filtered] JEOL Service

Message: Any good JEOL service engineers in Houston? I have a JSM-6360LV with loose connection
problem. Image is elongated in Y direction. Tapping door sometimes clears up and sometimes doesn't.

Login Host: 63.254.180.22
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From: bigelow-at-umich.edu
Date: Mon, 26 Sep 2011 21:42:50 -0500
Subject: [Microscopy] [Microscopy}RE:Martensite, test

Contents Retrieved from Microscopy Listserver Archives
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If you have a piece of the alloy large enough to perform a simple
test on you can probably tell whether its Martensite or tempered
Martensite by its physical properties. Just take a piece and bend it
sharply and quickly (put it in a vise and strike it sharply sideways
with a hammer). Martensite is a very brittle material, so if it's
Martensite it will break. Tempered Martensite, on the other hand, is
a very strong, tough material, so if that's what it is it will be
very difficult to bend and will not break.
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: vray-at-partbeamsystech.com
Date: Mon, 26 Sep 2011 22:09:53 -0500
Subject: [Microscopy] Re: Uninterruptible Power Supply for SEM - recommendations?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Based on redundancy considerations, I would have UPS plugged into the
wall and plug SEM into the UPS by the same plug. If UPS fails to the
point that you can't use it in bypass mode, or if UPS should be removed
for repairs, you will have possibility to re-plug SEM directly into the
wall and have it back operational relatively quickly; in case of
hard-wired installation you would need licensed electrician to
temporarily bypass the UPS.

Use overrated twist-lock plugs for reliability and if Safety will permit
then lock them mechanically to prevent accidental disconnection.
--
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 9/26/2011 1:49 PM, shafermr-at-whitman.edu wrote:
}
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} We have an FEI Quanta 250 SEM. We frequently have power surges in the
building and are looking to get an uninterruptible power supply (UPS)
for it. We are looking at a Toshiba 1600XP series (3.6kVa). The sales
rep is asking if we want it hard wired into the electrical or plugged
into the wall; based on your experience, is one better than the other?
Is the Toshiba a good model or are there others out there that are better?
}
} Thanks in advance!
}
} Michelle Shafer
} Whitman College
} shafermr-at-whitman.edu

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From: rfklie-at-uic.edu
Date: Mon, 26 Sep 2011 23:46:36 -0500
Subject: [Microscopy] Job opening in aberration corrected STEM at UIC

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear fellow Listers;

could you please forward this email to anybody who might be interested
in this position?

Thanks
Robert

Research Assistant Professor Position in Aberration-Corrected Scanning
Transmission Electron Microscopy


An Research Assistant Professor position is available in the Nanoscale
Physics Group lead by Professor Robert F. Klie at the University of
Illinois at Chicago to work on the application of atomic-resolution
Z-contrast and annular bright-field imaging, as well as electron
energy-loss spectroscopy (EELS) to functional nano-materials. The
successful candidate will working with the group’s new
aberration-corrected cold-field emission STEM (the JEOL ARM200-CF)
with sub-Å and sub-eV resolution, equipped with several in-situ
holders.

Candidates should have a Ph.D. in Physics, Materials Science or a
related discipline. The position requires extensive experience in
transmission electron microscopy and electron energy-loss
spectroscopy. Experience working with aberration-corrected scanning
transmission electron microscopy is also preferred. This position is
available starting  Nov 1, 2011, and remains open until it is filled.
For fullest consideration apply by October 21, 2011.  The salary will
range between $45,000 and $70,000 depending on the level of experience
and seniority.

Interested candidates can apply online at http://jobs.uic.edu. Please
submit a cover letter, CV with a complete list of publications, and
contact information of three professional references.   Questions
about the position should be directed to the search committee chair
(Prof. Robert Klie: rfklie-at-uic.edu). UIC is an AA/EOE


--
Robert F. Klie, PhD
Associate Professor
University of Illinois at Chicago
Department of Physics
Chicago, IL 60607
Tel: 312-996-6064
Fax: 312-996-9016


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From: John.Mardinly-at-asu.edu
Date: Tue, 27 Sep 2011 11:43:45 -0500
Subject: [Microscopy] Re: viaWWW:JEOL Service

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Try:
JEOLUSA.COM

John Mardinly
ASU
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From: ibarke2-at-uwo.ca
Date: Tue, 27 Sep 2011 15:16:34 -0500
Subject: [Microscopy] SEM - Looking for a combo coater and ion polisher

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi there,

I am in charge in finding us a new carbon coater. I would like a
carbon coater that also has an attached ion polisher. Does something
like this exist? If so, who makes it? What sort of details should I
look into?

Please respond to: ibarke2-at-uwo.ca

Thanks!

________________________________
Ivan R. Barker
UWO Earth Sciences MSc
ZAPLab Geochronology Research Technician
T: 519-661-2111 ext. 88397
E: ibarke2-at-uwo.ca


==============================Original Headers==============================
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From: bigelow-at-umich.edu
Date: Tue, 27 Sep 2011 15:52:41 -0500
Subject: [Microscopy] RE:Martensite data

Contents Retrieved from Microscopy Listserver Archives
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Vikram:

Your diffraction results suggest that you have
only ferrite in the areas examined. If either
cementite or martensite were present in any
quantity I would expect you to see a complex
array of spots/rings from them in addition to
the BCC spots/rings of ferrite. Is there any
chance that your surface material has been
de-carburized? because I would also expect you to
be able to see the fine carbide particles if it
were simple tempered martensite.

Here are some lattice parameter data, for your reference:
Ferrite is BCC with a unite cell size of about
2.866Å, Cementite (Fe3C) is orthorhombicv with a
= 4.52, b = 5.09, and c = 6.74Å., while
Martensite is BC tetragonal with a = b = 2.867
- 0.013x and c = 2.867 + 0.116x where x = wt.
pct carbon. (Elements of X-ray Diffraction, by
B. D. Cullity, Addison Wesley, 1959, Appendix 13
and Table A-13-2))


--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731


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From: swalck-at-southbaytech.com
Date: Tue, 27 Sep 2011 16:08:02 -0500
Subject: [Microscopy] SEM - Looking for a combo coater and ion polisher

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ivan,

There are several manufacturers of ion beam sputter systems with etching and
polishing options available on the market that will do what you want.

I'm a bit biased in saying that our IBS/e unit is the best available. With
our system, you have the option of a focused high energy ion gun for a small
area ion etching and polishing or a large area low energy Kaufman ion source
that can ion treat up to a 2" diameter sample. This is perfect for
petrographic samples. We have been able to ion polish the entire surfaces
of two inch petrographic samples for EBSD analysis. We can sputter coat
with our standard holder to a two inch diameter sample and up to a four inch
diameter sample with our large area stage. With our standard high energy
ion gun used for etching and polishing, the energy range is 2500 eV -10,000
eV. With the KDC-10 ion source, the energy range is 100 eV to 1000 eV.
With both types of system, the angular range for polishing/etching is 0 to
90°, where ion polishing is in the high angle range 84°-90° (relative to the
surface normal) and ion etching is usually done in the range of 45°-60°
(relative to the surface normal).

In your posting, you say that you are interested in a carbon coater. You
can ion beam sputter carbon and create a very good coating. However, when
you have an ion beam sputter system, you can put down very controlled, thin,
uniform coatings over highly topographic samples with other materials as
well. For example, a 10Å layer of Ir, Cr, or W can be used at very high
magnifications because these materials have very small grain size. A 10Å
layer of Ir will work very well to eliminate charging from your samples and
will not show up in the XEDS spectra unless very, very long acquisition
times are used. We supply both carbon and iridium targets as standard with
our system.

The combination of ion beam sputter coating and ion polishing/etching gives
your laboratory a very versatile research instrument. The etching
capability can be used for light microscopy as well. The ion beam sputter
process can put down virtually any type of film that you might be interested
in, not only those for microscopy. If your system is equipped with
auxiliary gas, then you can do reactive ion sputtering and reactive sputter
deposition as well.

Disclaimer: SBT manufacturers and sells the IBS/e Ion Beam Sputter and Etch
system.

-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

eMail: SWalck-at-SouthBayTech.com
Phone: 949-492-2600
Toll Free: 1-800-728-2233 (USA)
Fax: 949-492-1499

www.SouthBayTech.com


-----Original Message-----
X-from: ibarke2-at-uwo.ca [mailto:ibarke2-at-uwo.ca]
Sent: Tuesday, September 27, 2011 1:25 PM
To: swalck-at-southbaytech.com

Hi there,

I am in charge in finding us a new carbon coater. I would like a
carbon coater that also has an attached ion polisher. Does something
like this exist? If so, who makes it? What sort of details should I
look into?

Please respond to: ibarke2-at-uwo.ca

Thanks!

________________________________
Ivan R. Barker
UWO Earth Sciences MSc
ZAPLab Geochronology Research Technician
T: 519-661-2111 ext. 88397
E: ibarke2-at-uwo.ca


==============================Original Headers==============================
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From: opmills-at-mtu.edu
Date: Wed, 28 Sep 2011 11:52:45 -0500
Subject: [Microscopy] TEM Thin window EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

All,

I am sending our 20 yr old EDS detector in for repair. It currently has a Be window, but I'd like to switch to a thin window. Is this safe, i.e. would the thin window be durable? The TEM is a JEOL 4000FX that we run at 300kV max.

Thanks in advance.

Owen Mills
Michigan Tech University
Houghton, MI

==============================Original Headers==============================
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From: bozzola-at-siu.edu
Date: Wed, 28 Sep 2011 14:31:38 -0500
Subject: [Microscopy] EM Director Position Open

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

After 28 years at SIU, I will be retiring as Director of the IMAGE
facility at SIU on October 31, 2011.

My staff of 4 will also be leaving (retiring) by the end of the year.
I believe the university intends to fill the Directorship and two
technical positions. Please note that this is a research support (not
faculty/teaching) position and is not tenured. Here is a summary of
the position that will be advertised very shortly:

POSITION ANNOUNCEMENT
INTEGRATED MICROSCOPY & GRAPHICS EXPERTISE (IMAGE)
SOUTHERN ILLINOIS UNIVERSITY CARBONDALE

POSITION TITLE:
Director, IMAGE (12 month term, administrative professional)

QUALIFICATIONS:
Professional electron microscopist with a minimum of 4 years
experience managing a centralized, service-oriented facility with
multidisciplinary clients. Ph.D. (or equivalent professional
experience) in one of the hard sciences. Thorough understanding of
theory and application of scanning and transmission electron
microscopy, as well as ancillary techniques such as: energy dispersive
X-ray microanalysis, ultramicrotomy, scanning transmission electron
microscopy, vacuum coating procedures (sputtering, thermal
evaporation) and specimen preparation techniques for biological and
non-biological specimens. Experience in problem solving
(trouble-shooting) with advanced instrumentation. Familiarity with
light microscopy (conventional and fluorescence), image analysis and
atomic force microscopy. Working knowledge of graphics programs such
as Photoshop, Illustrator, InDesign, Acrobat, Powerpoint for use in
professional publications and large format posters. Able to work
independently with minimal administrative oversight or support.
Excellent organizational and communication skills (oral and written),
as well as experience writing grant proposals.

DUTIES:
Oversee all operational aspects of the central IMAGE facility. This
includes: (1) insuring performance of major instrumentation by
training of technologists in basic maintenance (filament replacement,
aperture cleaning, alignment) and clients in proper use of equipment,
(2) trouble-shooting problems with equipment and determining best
method to resolve issues, (3) developing long-range plan to replace
aging equipment by pursuing external funding, (4) overseeing
accounting (billing) and inventory control, (5) serving on student
advisory committees and teaching courses in electron microscopy, (6)
advising faculty with research projects involving electron microscopy,
(7) training clients in proper methods to prepare posters for
professional meetings, (8) overseeing printing of large-format posters
and routine maintenance of poster printer, (9) providing tours of the
facility to local colleges, schools and potential clients.

MAJOR INSTRUMENTATION:
FEI Quanta 450 field emission scanning electron microscope equipped
with Oxford X-Max 50 SDD energy dispersive X-ray microanalysis system
with STEM, SSBSED, low kV SSBSED and Everhart Thronley detectors;
Hitachi H7650II transmission electron microscope with integrated AMT
digital camera; Hitachi H7100 STEM and S2460N variable pressure SEM
both interfaced to Noran Voyager III X-ray microanalysis system;
Hitachi S570 conventional SEM upgraded to 4pi digital image capture
system; Park Scientific atomic force microscope.

SUPPORT INSTRUMENTATION:
5 ultramicrotomes (2 Leica UC6, UltraCut E, MT2-B, LKB III), Desk II
sputter coater, Denton high vacuum evaporator, modern
stereomicroscopes, fluorescence and conventional light microscopes
(all with digital image capture), diamond knives, glass knife makers.
HP 5000PS large format poster printer.

LOCATION: All equipment is located in a modern, standalone building
centrally located on the campus of SIUC. The building was designed by
John Bozzola, specifically for high resolution microscopy. Presently,
we are installing a gas powered generator and 8.5KW UPS battery system
in the event of power failure.


SIUC is an affirmative action/equal opportunity employer that strives
to enhance its ability to develop a diverse faculty and staff and to
increase its potential to service a diverse student population. All
applications are welcomed and encouraged and will receive
consideration.


--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: dcristofori-at-unive.it
Date: Thu, 29 Sep 2011 11:37:27 -0500
Subject: [Microscopy] Fwd: Re: TEM Thin window EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Owen,
in our lab we have a couple of EDS detectors (one for TEM, one for SEM)
both with thin window. Both of them are 12 year old, and our TEM is
operated usually at 300 kV.
In last years we have had evidences of a kind of vacuum connection
between TEM and EDS, which might be due to a small damage in the EDS
window, but even TEM service engineers are not completely sure.
Nevertheless we have managed to work in this condition for the last 2-3
years without any particular problem.
Until now no problem even with SEM EDS thin window.

Davide


~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~
Davide Cristofori

direct phone = 041.234.67.26
e-mail = dcristofori[at]unive[dot]it

Universita' Ca' Foscari Venezia
Dipartimento di Sc. Molecolari e Nanosistemi
Lab. di Scienza e Tecnologia dei Materiali
Via Torino, 155b
I-30172 Mestre (VE)
Italy
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~~~~~~~



Il 28/09/2011 19.00, opmills-at-mtu.edu ha scritto:
} ----------------------------------------------------------------------------
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} All,
}
} I am sending our 20 yr old EDS detector in for repair. It currently has a Be window, but I'd like to switch to a thin window. Is this safe, i.e. would the thin window be durable? The TEM is a JEOL 4000FX that we run at 300kV max.
}
} Thanks in advance.
}
} Owen Mills
} Michigan Tech University
} Houghton, MI
}
} ==============================Original Headers==============================
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} 4, 20 -- Subject: TEM Thin window EDS
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==============================Original Headers==============================
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From: heckman-at-bgsu.edu
Date: Thu, 29 Sep 2011 16:58:09 -0500
Subject: [Microscopy] meeting of Michigan Microscopy & Microanalysis Society

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Time: Oct. 21st, 2011
Daytime meeting with buffet lunch

Place: MSU Union, Michigan State University, East Lansing, MI

If using GPS, the address at the parking lot closest to campus:
100-200 Block Albert Ave.
East Lansing, 48823

Please visit our new website for details:
http://www.michmicroscopy.org

Officers of MMMS welcome you!


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 29 Sep 2011 18:23:46 -0500
Subject: [Microscopy] viaWWW:Cleaning diamond knives

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This Question/Comment was submitted to the Microscopy Listserver
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Email: skperkins-at-vt.edu Name: Sandy Hancock

Organization: Laboratory for Neurotoxicity Studies, VA Tech

Title-Subject: [Filtered] Cleaning diamond knives

Message: Hi Everyone,

I am looking for feedback on how folks are cleaning their diamond knives these days....
specifically, what process are you using to clean/remove epoxy resin sections (unfortunately)dried
on the back of the knife edge. Please reply directly to me (skperkin-at-vt.edu)and I will provide a
summary for the group.

Thank you in advance,
Sandy

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From: Pamela.Lloyd.ctr-at-wpafb.af.mil
Date: Fri, 30 Sep 2011 11:28:31 -0500
Subject: [Microscopy] MSORV Fall 2011 Meeting

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The Fall MSORV meeting will be held on Tuesday, October 25th at Tech
Solve, 6705 Steger Dr., Cincinnati, OH 45237 from 3-7:30 PM.

The program has been organized by Dan Kremser, President-elect, and an
agenda will be posted soon on the MSORV website, www.msorv.org. We are
very excited to have MSA's President-elect, Dr. Janet Woodward, as our
keynote speaker. Speaker abstracts will be posted on the website soon.
Please check it out to get meeting details, directions, etc.

To attend, you will have to pre-register in order for us to provide the
caterer with a head count and to provide a list of names for security at
Tech Solve. There is a $15 registration fee to attend for professional
non-members and guests and $5 for student non-members, but if you choose
to join at the meeting, the registration fee will be waived.
Registration fees will be collected at the door. MSORV members (student
and professional) do not have to pay a registration fee, but everyone
planning to attend must pre-register!

Please send an e-mail to Pam Lloyd, MSORV's Secretary, at
pamela.lloyd.ctr-at-wpafb.af.mil by October 12, 2011 to confirm your
attendance.




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From: pwebster-at-hei.org
Date: Fri, 30 Sep 2011 17:03:14 -0500
Subject: [Microscopy] Biological EM Course Announcement

Contents Retrieved from Microscopy Listserver Archives
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Dear Colleagues,

I would like to make you aware of an upcoming theoretical and practical
course that will be of interest to anyone who is working with
immunocytochemistry and colloidal gold particles.

The course - Quantifying immunogold label on EM thin sections - will be held
from April 5th to 7th, 2012 at the House Research Institute, Los Angeles,
CA, USA.

The course will review the current state-of-the-art for the following
approaches:

[1] A target molecule can be tested for preferential labeling by mapping the
localization of gold particles across a set of cell compartments.
[2] Data from wild-type and knockdown/knockout cells can be used to correct
raw gold particle counts, estimate specific labeling densities and then test
for preferential labeling.
[3] The same antigen can be mapped in two or more groups of cells to test
whether or not there are experimental shifts in compartment labeling
patterns.
[4] In multiple-labeling studies, different sizes of gold particle can be
used to test whether or not different antigens co-localize in one or more
compartments.
[5] Absolute numbers of gold particles can be mapped over compartments at
specific positions within polarized, oriented or dividing cells.

Each approach will be introduced in a lecture and then illustrated by means
of a practical exercise.

For more details:

Contact Paul Webster

Paul Webster, Ph.D.
House Research Institute
2100 West Third Street
Los Angeles
CA 90057
(213) 273 8026
pwebster-at-hei.org

Or visit: http://immunogold.houseresearch.org


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 2 Oct 2011 08:45:12 -0500
Subject: [Microscopy] viaWWW:ultracut s repair

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Email: hradek-at-yahoo.com Name: Gary Hradek

Organization: UCSF

Title-Subject: [Filtered] ultracut s repair

Message: My name is Gary Hradek and I work at UCSF. I am contacting you because like us at UCSF
you may have an Ultracut S. We have been told that Leica no longer services the Ultracut S. I am
hoping someone might have suggestions about servicing this very expensive and unique piece of
equipment. Thanks, Gary Hradek

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 3 Oct 2011 07:07:52 -0500
Subject: [Microscopy] viaWWW:servicing ultramicrotome

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Email: wadowska-at-upei.ca Name: Dorota Wadowska

Organization: Atlantic Veterinary College at UPEI

Title-Subject: [Filtered] servicing ultramicrotome

Message: Hi,
We have two old Reichert-Jung Ultracut E, one of them needed servicing. We had it serviced by Leica
although they said that the support service was not available any longer. They did excellent job
fixing and servicing it.
Dorota

Login Host: 137.149.102.148
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 3 Oct 2011 18:44:48 -0500
Subject: [Microscopy] viaWWW:ultracut s microtome

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Email: hradek-at-yahoo.com Name: Gary Hradek

Organization: ucsf

Title-Subject: [Filtered] ultracut s

Message: I should like to thank all who responded to our issue with our ultracut S. Our problem is
electronic and the board required to repair it is obsolete. I have been doing histology for over
30 years and the ultracut S was one of the finest microtomes made and one of the easiest to learn
on. Even a medical student could learn to cut good sections in a day. Doctors took a bit
longer. If you have a working ultracut s I would suggest turning off the lights when not in use as
the light circuit draws the bulk of the power and may cause heat to build up and cook the circuit
boards. Many thanks to all who responded. Gary

Login Host: 128.218.88.103
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==============================Original Headers==============================
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From: vray-at-partbeamsystech.com
Date: Mon, 3 Oct 2011 19:29:47 -0500
Subject: [Microscopy] Re: viaWWW:ultracut s microtome

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Gary,

If you could not source the replacement PCB and can't fine more local
service, then I'd be more then happy to fix the board for you.

There is no such thing as "unrepairable", though sometimes restoration
projects may get pricey.

Cheers :)
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 10/3/2011 7:46 PM, microscopylistserver-noreply-at-microscopy.com wrote:
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} hradek-at-yahoo.com as well as the MIcroscopy Listserver
} ---------------------------------------------------------------------------
}
} Email: hradek-at-yahoo.com Name: Gary Hradek
}
} Organization: ucsf
}
} Title-Subject: [Filtered] ultracut s
}
} Message: I should like to thank all who responded to our issue with our ultracut S. Our problem is
} electronic and the board required to repair it is obsolete. I have been doing histology for over
} 30 years and the ultracut S was one of the finest microtomes made and one of the easiest to learn
} on. Even a medical student could learn to cut good sections in a day. Doctors took a bit
} longer. If you have a working ultracut s I would suggest turning off the lights when not in use as
} the light circuit draws the bulk of the power and may cause heat to build up and cook the circuit
} boards. Many thanks to all who responded. Gary
}
} Login Host: 128.218.88.103
} ---------------------------------------------------------------------------
}
}
}
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From: vitalylazar-at-att.net
Date: Tue, 4 Oct 2011 01:31:11 -0500
Subject: [Microscopy] free TEM/SEM parts available

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The following available for the cost of shipping or free for local pickup:

TEM high voltage tanks for Philips EM-300/301

Most electronic (plugin units) for Philips SEM 505/515/525; and some
mechanical parts.

Various (plate/film) camera parts for Philips and JEOL including film
holders and film magazines.


--
Vitaly Feingold
SIA
2773 Heath Lane
Duluth GA 30096
Ph. 770-232-7785
Fax 770-232-1791
www.sia-cam.com
vitaly-at-sia-cam.com

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 4 Oct 2011 07:58:39 -0500
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: EMPA Au analyzing

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
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---------------------------------------------------------------------------
Remember this posting is most likely not from a Subscriber, so when replying please copy both
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Email: yashasin-at-rocketmail.com Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] Au analyzing

Message: Hi all
Analyzing the Magnetite and pyrite with EPMA SX100 shows 1 to 1.5% Au in some points, is it natural
or may be wrong? also our condition is: 15Kv, 20 nA and beam size 3um. and in BSE pictures have not
been observed any visible gold.
How much is the high grade Au concentration in Magnetite and Pyrite?
there are some results:
Point Fe Co Ni Au Total
1 / 1 . 61.27 0.23 1.05 1.29 66.03
2 / 1 . 60.95 0.42 0.05 0.93 63.57
3 / 1 . 53.95 0 0 1.43 56.4

best regards
Kazem

Login Host: 94.183.106.107
---------------------------------------------------------------------------



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From: sergei2-at-ornl.gov
Date: Tue, 4 Oct 2011 08:23:08 -0500
Subject: [Microscopy] Two postdoctoral positions - SPM and oxides

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Colleagues

I would like to bring to your attention two postdoctoral position
openings in my group, one in the field of scanning probe microscopy
(including novel dynamics, multifrequency, thermomechanical, and other
advanced probes) and the other in the field of growth and in-situ SPM of
oxide materials. The details for these positions are available at:
1. https://www3.orau.gov/ORNL_TOppS/Posting/Details/206
2. https://www3.orau.gov/ORNL_TOppS/Posting/Details/207

Please contact me directly if interested, or forward this information to
your graduate students and postdocs.

Yours
Sergei V. Kalinin

--
Sergei V. Kalinin
co-Theme Leader for Functional Imaging on the Nanoscale
The Center for Nanophase Materials Sciences
and Materials Sciences and Technology Division
Oak Ridge National Laboratory
Oak Ridge, TN 37922

Adjunct Associate Professor,
Department of Materials Science and Engineering,
University of Tennessee, Knoxville

Phone: (865) 241-0236
http://imaging.ornl.gov


==============================Original Headers==============================
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From: DusevichV-at-umkc.edu
Date: Tue, 4 Oct 2011 09:02:42 -0500
Subject: [Microscopy] RE: [Filtered] MicroscopyListserverviaWWW: EMPA Au

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Magnetite is usually forms crystals in some matrix. Depending on origin of your sample it can contain gold in varied quantities. Gold is associated with magnetite and gold prospectors are often looking for magnetite as a gold companion.

Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Manager
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784


} -----Original Message-----
} From: microscopylistserver-noreply-at-microscopy.com
} [mailto:microscopylistserver-noreply-at-microscopy.com]
} Sent: Tuesday, October 04, 2011 7:59 AM
} To: Dusevich, Vladimir
} Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: EMPA Au
} analyzing
}
}
}
}
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}
} Email: yashasin-at-rocketmail.com Name: Kazem
}
} Organization: IMPRC
}
} Title-Subject: [Filtered] Au analyzing
}
} Message: Hi all
} Analyzing the Magnetite and pyrite with EPMA SX100 shows 1 to 1.5% Au
} in some points, is it natural
} or may be wrong? also our condition is: 15Kv, 20 nA and beam size 3um.
} and in BSE pictures have not
} been observed any visible gold.
} How much is the high grade Au concentration in Magnetite and Pyrite?
} there are some results:
} Point Fe Co Ni Au Total
} 1 / 1 . 61.27 0.23 1.05 1.29 66.03
} 2 / 1 . 60.95 0.42 0.05 0.93 63.57
} 3 / 1 . 53.95 0 0 1.43 56.4
}
} best regards
} Kazem
}
} Login Host: 94.183.106.107
} -----------------------------------------------------------------------
} ----
}
}
}
} ==============================Original
} Headers==============================
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} analyzing
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From: delannoy-at-jhmi.edu
Date: Tue, 4 Oct 2011 13:22:16 -0500
Subject: [Microscopy] anti yfp

Contents Retrieved from Microscopy Listserver Archives
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Hello all,
Who has a good source (pharmaceuticals? Jackson immuno-research? etc?) for an anti-yfp
Aby? We want to try postembed LR White immunogold label of a yfp expression in drosophila.
Pitfalls???

sincerely
Michael Delannoy

==============================Original Headers==============================
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From: wesaia-at-iastate.edu
Date: Tue, 4 Oct 2011 15:42:39 -0500
Subject: [Microscopy] Using a Spot Insight camera under Windows 7

Contents Retrieved from Microscopy Listserver Archives
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I am forwarding this request for a colleague that does not subscribe to the list. I will collect responses and forward them on.

He has a Spot Insight camera model 3.2.0 (about 10 years old) attached to a light microscope. It is currently running off of a PCI card in a Windows XP box. His IT folks are trying to move him over to a new box running Windows 7 and the process is not going well.

When they install the interface card in the new HP computer, it fails to boot up. The DVD light flashes a bit, but the disk drive light never comes on. I am wondering if there is a resource or power problem.

There will then come the issue of drivers and finding a way for the old driver to work on Windows 7.

Has anyone successfully migrated this camera over to Windows 7 that you could share your insight? Is there any support for this available from the company these days? My friend tells me his messages have gone unreplied.

Thanks in advance.
Warren Straszheim


==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 4 Oct 2011 19:36:23 -0500
Subject: [Microscopy] viaWWW:Interview with Dr. Shinya Inoue

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Email: bfoster-at-mme1.com Name: Barbara Foster

Organization: MME, Inc
Title-Subject: [Filtered] Interview with Dr. Shinya Inoue

Message: Hi, Group

For those of you who have attended any of the courses at Woods Hole/Marine Biological Lab, Shinya is
a well known and much-beloved figure. His "microscope" is legendary and they show only a glimpse of
it here. I came across this recent interview with him and thought you might enjoy it.
http://jcb.rupress.org/content/194/6/810
Best regards,
Barbara Foster, President and Sr. Consultant

Microscopy/Microscopy Education P: (972)924-5310 W: www.MicroscopyEducation.com

We are now scheduling courses through June 2012

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 4 Oct 2011 19:36:45 -0500
Subject: [Microscopy] viaWWW:Filtering Formvar Solution

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Email: Tracy. Lawrence-at-inspection.gc.ca Name: Tracy Lawrence

Organization: Canadian Food Inspection Agency

Title-Subject: [Filtered] Filtering Formvar Solution

Message: I have a 2% fromvar solution that I have used frequently and now has dust etc in it.
Rather than have to disposal of through hazardous waste, I would like to filter it and reuse. Does
anyine know what kind, size of filter paper I should use? My solution is in cholorform.
Thank you,
Tracy
CFIA Sidney
Canada

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From: probe-at-geotrack.com.au
Date: Tue, 4 Oct 2011 20:18:58 -0500
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: EMPA Au

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Hi Kazem,

There are 3rd order Fe Ka1 and Ka2 peaks close to the Au Ma that I presume
you are using, The easiest way to check if the Fe is interfering is to run
your Fe standard as an unknown and see if you get any Au .

Good Luck
Pat

Patrick R Kelly Operations Manager
Geotrack International Pty Ltd ABN16 006 821 209
37 Melville Road, Brunswick West, Victoria 3055 Australia
Telephone: +613 93801077 Facsimile: +613 93801477
http://www.geotrack.com.au

-----Original Message-----
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Sent: Wednesday, October 05, 2011 12:00 AM
To: probe-at-geotrack.com.au

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Email: yashasin-at-rocketmail.com Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] Au analyzing

Message: Hi all
Analyzing the Magnetite and pyrite with EPMA SX100 shows 1 to 1.5% Au in
some points, is it natural
or may be wrong? also our condition is: 15Kv, 20 nA and beam size 3um. and
in BSE pictures have not
been observed any visible gold.
How much is the high grade Au concentration in Magnetite and Pyrite?
there are some results:
Point Fe Co Ni Au Total
1 / 1 . 61.27 0.23 1.05 1.29 66.03
2 / 1 . 60.95 0.42 0.05 0.93 63.57
3 / 1 . 53.95 0 0 1.43 56.4

best regards
Kazem





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From: randy-nessler-at-uiowa.edu
Date: Wed, 5 Oct 2011 10:45:24 -0500
Subject: [Microscopy] Iowa Microscopy Society Meeting

Contents Retrieved from Microscopy Listserver Archives
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I got four meaningful replies to my query
- ALONG WITH 11 OUT OF OFFICE REPLIES so far. I suppose a few more are still on the way.

I appreciate wanting to maintain contact with customers and clients and not leave them hanging in your absence. However, I am always a little bemused to be notified of who to contact in your absence when I am not your customer or client and really don't care that you are absent.

I concur with the list guidelines and wish ones would somehow manage to exempt list messages from your out-of-office messages.


Now back to the issue-
More information, the camera is model 3.2.0 and the software version is 3.2.4. The new computer is a HP Compaq 6200 pro running Windows 7 (32 bit).

The new computer fails to boot at all. I get the impression that the normal diagnostic boot screens fail to appear. The problem occurs in the earliest stages.

I did hear back from the folks at Diagnostic Instruments and Spot Imaging. The problem seems to be that the card requires 5V from the PCI slot and many motherboards fail to provide it. They offer 3.3V instead.

There are plenty of pages out on the net describing the 3.3 vs. 5 V problem. Wikipedia has a nice one. Apparently, a new standard suggested to some manufactures that 5V was to be excluded from the slots conforming to the new specification. That was a debatable reading. It does not have to be excluded. Yet, some manufacturers have dropped it. Dell was mentioned in particular. It may also be the case with HP.

This is probably an issue, or will be, with many instrument interface cards as we move to new computers. I will now know to specifically check to see if the card needs 5V and if the motherboard offers it.

One other reply cited that they were not able to get their Spot card to work with Windows 7-64 bit. Spot imaging says they are working on it. They said their current software and drivers already works with Windows 7-32, and they are working on the 64-bit version. They have a universal voltage interface card that includes an update to the new software.

So it looks like we have some options.
We can find a motherboard that supplies 5 V to the PCI slots. Then we will have to go through the exercise of seeing if the XP drivers will work under Windows 7. Or we can go buy a new interface card at what seems a reasonable price and get the new software.

Warren
________________________________________
X-from: Patricia Furgal [mailto:pat.furgal-at-spotimaging.com]
Sent: Tuesday, October 04, 2011 4:50 PM
To: wesaia-at-iastate.edu
Cc: 'David Springett'; 'Stephan Palmer'


The Iowa Microscopy Society (IMS) will hold its annual meeting Friday, November 4th. The talks will be present in room 283 of the Eckstein Medical Research Building on the University of Iowa. The agenda is as follows:
Iowa Microscopy Society Fall Meeting 2011
November 4, 2011
Titles and Speakers:
Two-Photon Fluorescence Lifetime FRET and single Molecule Imaging in the Study of Prestin"
Richard Hallworth, Ph. D. Creighton University

"Tracking Immunity and Tissue Responses In Vivo with Intravital Multiphoton Microscopy"
Alex Huang, M.D., Ph. D. The Case Western Reserve University

"Confocal and Multiphoton Approaches to Imaging Glial Cell Responses to Injury in Developing Mouse Brain"
Michael Dailey, Ph. D. University of Iowa

"Two-Photon Derived Insights into the Dynamics of Endogenous Cochlear Metabolism"
Heather Smith, Ph. D. Creighton University

"Exploring neuronal function with cellular and subcellular fluorescent microscopy in real time: Ca2+ signaling and beyond"
Yuriy Usachev, Ph. D. University of Iowa

"Beyond Abbe - Optical imaging below the diffraction limit"
Nathan Claxton Nikon Instruments, Inc

"Anatomic and Physiologic Small Animal Imaging: An Expanding Palette"
John Sunderland, Ph. D. University of Iowa

"Fluorescent Probes for Live Cell and Whole Animal imaging"
Michael Ignatius Life Technologies

Pre-registration is not required, attendance is free (membership in IMS or MSA highly encouraged). Lunch will be provided for IMS members. Watch the IMS website for updates and talk time schedules as the program is solidified: http://www.uiowa.edu/~cmrf/ims/news/news.html


________________________________
Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged. If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited. Please reply to the sender that you have received the message in error, then delete it. Thank you.
________________________________


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 5 Oct 2011 19:17:19 -0500
Subject: [Microscopy] viaWWW:NESM Fall Meeting Oct. 20th:

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Email: nesmicroscopy-at-gmail.com Name: NESM Board

Organization: The New England Society for Microscopy

Title-Subject: [Filtered] NESM Fall Meeting Oct. 20th: Almost Here!

Message: Hello Microscopy Listserverites,

The New England Society for Microscopy will be holding their annual Fall Meeting -at- Harvard
University in just a few short weeks (October 20th). This is a spectacular chance to attend
informative workshops (BioSEM, BioTEM, CARS, Super Resolution SI/PAL-M, and X-ray MicroCT) followed
by a dinner meeting:

"Imaging the Connectome", Jeff Lichtman, Ph.D., Harvard University

"Super Resolution Light Microscopy: Structured Illumination and PAL-M", Bernhard Goetze, Ph.D., Zeiss

Workshop space is limited. Register Today!

Please visit our new website for information: http://nesmicroscopy.org/

Cheers,
NESM Board

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From: allan.mitchell-at-stonebow.otago.ac.nz
Date: Wed, 5 Oct 2011 23:39:48 -0500
Subject: [Microscopy] Electron Microscopy Technician position available

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi All

An opportunity exists for an Electron Microscopy Technician to work in the Otago Centre for Electron Microscopy at the University of Otago. The appointee will principally support scanning electron microscopy, and be responsible for developing correlative light and transmission electron microscopy techniques for use by researchers.

The ideal applicant will have an enthusiasm for electron microscopy with experience in either scanning electron microscopy and/or transmission electron microscopy. Previous experience in immunofluorescence and/or immunocytochemistry is highly desirable. The appointee will be expected to successfully train users of the Centre in these techniques, and keep up-to-date with developments in these areas. The ability to work as part of a team, cope with a wide range of demands, work without direct supervision, set priorities, and bring enthusiasm to the job is essential.

Specific enquiries may be directed to Mr Allan Mitchell, Manager of the Otago Centre for Electron Microscopy.

For more information and a copy of the job description go to the University of Otago web site and look under current vacancies.

Applications quoting reference number 1100517 will close on Friday, 28 October 2011.

Allan Mitchell
Microscopy Otago - Electron Microscopy
c/- Department of Anatomy
Otago School of Medical Sciences
P.O. Box 913
Dunedin
New Zealand

==============================Original Headers==============================
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From: eschumacher-at-mccrone.com
Date: Thu, 6 Oct 2011 07:38:20 -0500
Subject: [Microscopy] Meeting Announcement: Midwest Microscopy and Microanalysis Society

Contents Retrieved from Microscopy Listserver Archives
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Greetings All,

The Midwest Microscopy and Microanalysis Society will hold its final meeting of 2011 on Friday, November 4th, at Baxter Healthcare in Deerfield, IL. The program is titled, "Spectroscopy Techniques for Materials and Biological Microscopy". Program details and registration information can be found on our website under Meetings:

www.midwestmicroscopy.org

Ke-Bin Low and Robert Klie have invited an excellent group of speakers. We look forward to seeing you there!

Elaine Schumacher
M3S Program Coordinator

*********************************************************************
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Senior Research Scientist
McCrone Associates, Inc.
850 Pasquinelli Drive
Westmont, IL 60559-5539 USA
630-887-7100 (tel)
630-887-7417 (fax)
E-mail: eschumacher-at-mccrone.com
Web Site: www.mccrone.com



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 6 Oct 2011 20:10:11 -0500
Subject: [Microscopy] viaWWW:EDS "spatial" resolution issue

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This Question/Comment was submitted to the Microscopy Listserver
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Email: mckimmye-at-gmail.com Name: Emily McKimmy

Organization: TRW Automotive

Title-Subject: [Filtered] EDS resolution issue

Message: I am having an issue with our EDS that if we have carbon tape next to copper tape and do
Point and Shoot or mapping mode no matter where we are on the copper tape we see some carbon and no
matter where we are on the carbon tape we see some copper. If I put in a stub with only copper, I
see only copper and the same is true for carbon, so I am not getting stray X-rays from the
surroundings (column etc). When I put in a sample with two different types of tape, I always see a
little of the other element. My concern is when doing an unknown sample that is a failure I will
not be able to target the area of concern, I will see the surrounding area as well. We had a Noran
System Six EDS on our ElectroScan (now FEI) 2020 Environmental SEM, I noticed this problem. I
called the EDS service engineer and he found that we were missing the collimator on the EDS. There
was no replacement collimator and we got a new Noran System Seven Ultra Dry SDD. We are still
having the issue. The EDS engineer feels the SEM beam is not focused/ spreading and that is the
issue. I am also unsure if it is the vacuum levels. We use typically use 2 Torr and using 0.1 Torr
was recommended by an EDS applications person (not for this issue but in general), but the vacuum
wonÂ’t go below 0.3 Torr and imaging at the lower vacuum is troublesome. Is it realistic to expect
to see only copper when on copper tape with carbon tape 100um away? Is there a way I determine the
beam ‘footprint’ size somehow? Thank-you.

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From: colijn.1-at-osu.edu
Date: Thu, 6 Oct 2011 20:53:31 -0500
Subject: [Microscopy] Re: viaWWW:EDS "spatial" resolution issue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Emily,

My first guess would be that you are getting beam spreading due to the
residual gas in your ESEM. Try a scan on a good conductive sample using
high-vacuum. If your system is operating correctly you should pick up no
stray X-ray signal. The tails due to the scattering by the gas can
extend pretty far away from the primary beam. The scattering is a
function of the gas pressure and the path length through the gas, so the
longer the working distance, the worse the beam tails will be.

You can test the beam spreading by using a carbon planchet with a Cu
grid or Cu tape on it. Start with the beam far away from the Cu and take
spectra as you move the beam toward the Cu. Try this in a good hard
vacuum and then with various gas pressures in the chamber. If your
detector geometry allows, try different working distances too.

Interestingly, the tails generally do not have a strong effect on the
imaging resolution. You will see a significant contrast drop before the
resolution is greatly affected.

Scott Wight's article may be useful.
Scott A. Wight, Experimental data and model simulations of beam spread
in the environmental scanning electron microscope.
Scanning, v23,
{http://onlinelibrary.wiley.com/doi/10.1002/sca.v23:5/issuetoc} pages
320–327 , September/October 2001

Cheers,
Henk


At 10/6/2011 9:11 PM, microscopylistserver-noreply-at-microscopy.com wrote:
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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}
} Email: mckimmye-at-gmail.com Name: Emily McKimmy
}
} Organization: TRW Automotive
}
} Title-Subject: [Filtered] EDS resolution issue
}
} Message: I am having an issue with our EDS that if we have carbon tape next to copper tape and do
} Point and Shoot or mapping mode no matter where we are on the copper tape we see some carbon and no
} matter where we are on the carbon tape we see some copper. If I put in a stub with only copper, I
} see only copper and the same is true for carbon, so I am not getting stray X-rays from the
} surroundings (column etc). When I put in a sample with two different types of tape, I always see a
} little of the other element. My concern is when doing an unknown sample that is a failure I will
} not be able to target the area of concern, I will see the surrounding area as well. We had a Noran
} System Six EDS on our ElectroScan (now FEI) 2020 Environmental SEM, I noticed this problem. I
} called the EDS service engineer and he found that we were missing the collimator on the EDS. There
} was no replacement collimator and we got a new Noran System Seven Ultra Dry SDD. We are still
} having the issue. The EDS engineer feels the SEM beam is not focused/ spreading and that is the
} issue. I am also unsure if it is the vacuum levels. We use typically use 2 Torr and using 0.1 Torr
} was recommended by an EDS applications person (not for this issue but in general), but the vacuum
} wonÂ’t go below 0.3 Torr and imaging at the lower vacuum is troublesome. Is it realistic to expect
} to see only copper when on copper tape with carbon tape 100um away? Is there a way I determine the
} beam ‘footprint’ size somehow? Thank-you.
}
} Login Host: 12.173.204.42
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
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}

--
Hendrik O. Colijn www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

==============================Original Headers==============================
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From: dsherman-at-purdue.edu
Date: Thu, 6 Oct 2011 21:40:29 -0500
Subject: [Microscopy] viaWWW:EDS "spatial" resolution issue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I agree with Henk's assessment below. Many variable pressure instruments
have X-ray cones that fit on the bottom of the final lens below the
vacuum-limiting aperture. These protect the beam from the low vacuum
interaction for a greater distance and decrease the spread. See if this is
available for your instrument as it may solve your problem to a significant
extent.

Debby

---
Debby Sherman, Director Phone: 765-494-6666
Life Science Microscopy Facility FAX: 765-494-5896
Purdue University E-mail: dsherman-at-purdue.edu
S-052 Whistler Building
170 S. University Street
West Lafayette, IN 47907
http://www.ag.purdue.edu/facilities/microscopy




On 10/6/11 9:54 PM, "Hendrik Colijn" {colijn.1-at-OSU.edu} wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Emily,
}
} My first guess would be that you are getting beam spreading due to the
} residual gas in your ESEM. Try a scan on a good conductive sample using
} high-vacuum. If your system is operating correctly you should pick up no
} stray X-ray signal. The tails due to the scattering by the gas can
} extend pretty far away from the primary beam. The scattering is a
} function of the gas pressure and the path length through the gas, so the
} longer the working distance, the worse the beam tails will be.
}
} You can test the beam spreading by using a carbon planchet with a Cu
} grid or Cu tape on it. Start with the beam far away from the Cu and take
} spectra as you move the beam toward the Cu. Try this in a good hard
} vacuum and then with various gas pressures in the chamber. If your
} detector geometry allows, try different working distances too.
}
} Interestingly, the tails generally do not have a strong effect on the
} imaging resolution. You will see a significant contrast drop before the
} resolution is greatly affected.
}
} Scott Wight's article may be useful.
} Scott A. Wight, Experimental data and model simulations of beam spread
} in the environmental scanning electron microscope.
} Scanning, v23,
} {http://onlinelibrary.wiley.com/doi/10.1002/sca.v23:5/issuetoc} pages
} 320­327 , September/October 2001
}
} Cheers,
} Henk
}
}
} At 10/6/2011 9:11 PM, microscopylistserver-noreply-at-microscopy.com wrote:
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
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} } ----------------------------------------------------------------------------
} }
} } This Question/Comment was submitted to the Microscopy Listserver
} } using the WWW based Form at http://www.microscopy.com/MLFormMail.html
} } ---------------------------------------------------------------------------
} } Remember this posting is most likely not from a Subscriber, so when replying
} } please copy both
} } mckimmye-at-gmail.com as well as the MIcroscopy Listserver
} } ---------------------------------------------------------------------------
} }
} } Email: mckimmye-at-gmail.com Name: Emily McKimmy
} }
} } Organization: TRW Automotive
} }
} } Title-Subject: [Filtered] EDS resolution issue
} }
} } Message: I am having an issue with our EDS that if we have carbon tape next
} } to copper tape and do
} } Point and Shoot or mapping mode no matter where we are on the copper tape we
} } see some carbon and no
} } matter where we are on the carbon tape we see some copper. If I put in a
} } stub with only copper, I
} } see only copper and the same is true for carbon, so I am not getting stray
} } X-rays from the
} } surroundings (column etc). When I put in a sample with two different types
} } of tape, I always see a
} } little of the other element. My concern is when doing an unknown sample that
} } is a failure I will
} } not be able to target the area of concern, I will see the surrounding area as
} } well. We had a Noran
} } System Six EDS on our ElectroScan (now FEI) 2020 Environmental SEM, I
} } noticed this problem. I
} } called the EDS service engineer and he found that we were missing the
} } collimator on the EDS. There
} } was no replacement collimator and we got a new Noran System Seven Ultra Dry
} } SDD. We are still
} } having the issue. The EDS engineer feels the SEM beam is not focused/
} } spreading and that is the
} } issue. I am also unsure if it is the vacuum levels. We use typically use 2
} } Torr and using 0.1 Torr
} } was recommended by an EDS applications person (not for this issue but in
} } general), but the vacuum
} } won¹t go below 0.3 Torr and imaging at the lower vacuum is troublesome. Is
} } it realistic to expect
} } to see only copper when on copper tape with carbon tape 100um away? Is there
} } a way I determine the
} } beam Œfootprint¹ size somehow? Thank-you.
} }
} } Login Host: 12.173.204.42
} } ---------------------------------------------------------------------------
} }
} }
} }
} } ==============================Original Headers==============================
} } 8, 25 -- From microscopylistserver-noreply-at-microscopy.com Thu Oct 6 20:10:11
} } 2011
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From: nicholas.ritchie-at-nist.gov
Date: Fri, 7 Oct 2011 08:02:45 -0500
Subject: [Microscopy] viaWWW:EDS "spatial" resolution issue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The problem you report is a classic problem with performing EDS analysis in an environmental SEM. In an environmental SEM, the images can look crisp and high resolution even at relatively high pressures (you report 2 Torr). However, the images are deceptive. The image contrast is primarily formed by the unscattered central node of the electron beam. However, because of the gas in the chamber a large fraction of the electrons in the beam are scattered once or more times before interacting with the sample. A single scattering event can deflect a beam electron by hundreds of microns. The deflected electrons cause the central node of the beam to be surrounded by a skirt which may be hundreds of microns in diameter. Depending on the gas path length and the gas pressure in the chamber you may only have a most of the beam electrons in the unscattered central node or you may have a very small fraction. It sounds like you might be in a situation in which a large fraction of the electrons are being scattered into the skirt. The skirt makes quantitative x-ray microanalysis much more difficult. A handful of techniques have been proposed for dealing with the skirt but the simplest is to reduce the effective gas path length until the skirt is no longer a problem.

You can use the Monte Carlo simulator built into NIST DTSA-II (http://www.cstl.nist.gov/div837/837.02/epq/dtsa2/index.html) to model your environmental SEM. The simulations can provide insight into the magnitude of the problem and how you might resolve it.

Nicholas


=======================================
Nicholas W. M. Ritchie
Physicist, Surface and Microanalysis Science Division
National Institute of Standards and Technology
100 Bureau Drive, MS: 8371
Gaithersburg, MD 20899-8371
(Work) (301) 975-3929 (Cell) (240) 883-8982

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Email: mckimmye-at-gmail.com Name: Emily McKimmy

Organization: TRW Automotive

Title-Subject: [Filtered] EDS resolution issue

Message: I am having an issue with our EDS that if we have carbon tape next to copper tape and do Point and Shoot or mapping mode no matter where we are on the copper tape we see some carbon and no matter where we are on the carbon tape we see some copper. If I put in a stub with only copper, I see only copper and the same is true for carbon, so I am not getting stray X-rays from the surroundings (column etc). When I put in a sample with two different types of tape, I always see a little of the other element. My concern is when doing an unknown sample that is a failure I will not be able to target the area of concern, I will see the surrounding area as well. We had a Noran System Six EDS on our ElectroScan (now FEI) 2020 Environmental SEM, I noticed this problem. I called the EDS service engineer and he found that we were missing the collimator on the EDS. There was no replacement collimator and we got a new Noran System Seven Ultra Dry SDD. We are still having the issue. The EDS engineer feels the SEM beam is not focused/ spreading and that is the issue. I am also unsure if it is the vacuum levels. We use typically use 2 Torr and using 0.1 Torr was recommended by an EDS applications person (not for this issue but in general), but the vacuum won’t go below 0.3 Torr and imaging at the lower vacuum is troublesome. Is it realistic to expect to see only copper when on copper tape with carbon tape 100um away? Is there a way I determine the beam ‘footprint’ size somehow? Thank-you.

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From: vray-at-partbeamsystech.com
Date: Fri, 7 Oct 2011 11:14:21 -0500
Subject: [Microscopy] viaWWW:EDS "spatial" resolution issue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Nicolas,

Fully agreeing with your considerations, I noticed Emily mentioning that
SEM will not pump below 0.3 Torr. Unless there is an operator mistake
somewhere, to me it sounds like her tool is in dire need of repairs...

Cheers :)
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 10/7/2011 9:04 AM, nicholas.ritchie-at-nist.gov wrote:
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} The problem you report is a classic problem with performing EDS analysis in an environmental SEM. In an environmental SEM, the images can look crisp and high resolution even at relatively high pressures (you report 2 Torr). However, the images are deceptive. The image contrast is primarily formed by the unscattered central node of the electron beam. However, because of the gas in the chamber a large fraction of the electrons in the beam are scattered once or more times before interacting with the sample. A single scattering event can deflect a beam electron by hundreds of microns. The deflected electrons cause the central node of the beam to be surrounded by a skirt which may be hundreds of microns in diameter. Depending on the gas path length and the gas pressure in the chamber you may only have a most of the beam electrons in the unscattered central node or you may have a very small fraction. It sounds like you might be in a situation in which a large fraction
of!
} the electrons are being scattered into the skirt. The skirt makes quantitative x-ray microanalysis much more difficult. A handful of techniques have been proposed for dealing with the skirt but the simplest is to reduce the effective gas path length until the skirt is no longer a problem.
}
} You can use the Monte Carlo simulator built into NIST DTSA-II (http://www.cstl.nist.gov/div837/837.02/epq/dtsa2/index.html) to model your environmental SEM. The simulations can provide insight into the magnitude of the problem and how you might resolve it.
}
} Nicholas
}
}
} =======================================
} Nicholas W. M. Ritchie
} Physicist, Surface and Microanalysis Science Division
} National Institute of Standards and Technology
} 100 Bureau Drive, MS: 8371
} Gaithersburg, MD 20899-8371
} (Work) (301) 975-3929 (Cell) (240) 883-8982
}
} -----Original Message-----
} X-from: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
} Sent: Thursday, October 06, 2011 9:14 PM
} To: Ritchie, Nicholas
} Subject: [Microscopy] viaWWW:EDS "spatial" resolution issue
}
}
}
}
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} Email: mckimmye-at-gmail.com Name: Emily McKimmy
}
} Organization: TRW Automotive
}
} Title-Subject: [Filtered] EDS resolution issue
}
} Message: I am having an issue with our EDS that if we have carbon tape next to copper tape and do Point and Shoot or mapping mode no matter where we are on the copper tape we see some carbon and no matter where we are on the carbon tape we see some copper. If I put in a stub with only copper, I see only copper and the same is true for carbon, so I am not getting stray X-rays from the surroundings (column etc). When I put in a sample with two different types of tape, I always see a little of the other element. My concern is when doing an unknown sample that is a failure I will not be able to target the area of concern, I will see the surrounding area as well. We had a Noran System Six EDS on our ElectroScan (now FEI) 2020 Environmental SEM, I noticed this problem. I called the EDS service engineer and he found that we were missing the collimator on the EDS. There was no replacement collimator and we got a new Noran System Seven Ultra Dry SDD. We are still having the
i!
} ssue. The EDS engineer feels the SEM beam is not focused/ spreading and that is the issue. I am also unsure if it is the vacuum levels. We use typically use 2 Torr and using 0.1 Torr was recommended by an EDS applications person (not for this issue but in general), but the vacuum won’t go below 0.3 Torr and imaging at the lower vacuum is troublesome. Is it realistic to expect to see only copper when on copper tape with carbon tape 100um away? Is there a way I determine the beam ‘footprint’ size somehow? Thank-you.
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 7 Oct 2011 20:49:22 -0500
Subject: [Microscopy] viaWWW:EDS Spatial resolution issue

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 7 Oct 2011 20:50:04 -0500
Subject: [Microscopy] viaWWW:Preparation of TEM cross sections of Semiconductors

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Email: mlibarra27-at-gmail.com Name: Maria Lujan Ibarra

Title-Subject: [Filtered] Preparation of TEM cross sections of Semiconductors

Message: Hi

I need to prepare cross section of SiSiO2 for TEM but the epoxy that is in in the lab is very old. I
need to buy an adhesive . Can anyone tell me the name of the epoxy that use for cross section and
ion milling?
I have an adhesive that we use to space applications: down corning 93500, someone suggest to me that
I can use it for TEM. Can anyone tell me if its apropiate for that use?

Thanks for your help in advance!!

Maria Lujan



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From: swalck-at-southbaytech.com
Date: Fri, 7 Oct 2011 21:13:29 -0500
Subject: [Microscopy] viaWWW:Preparation of TEM cross sections of

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Maria,

I use EpoTek-353ND from Epoxy Technology. It has a very long usable shelf
life. You can find it online at
http://epotek.com/search-results.asp?searchField=353ND

If you are not doing site-specific work, I would also recommend the Small
Angle Cleavage Technique, aka MicroCleave(TM) technique for doing your cross
sections of semiconducting materials. It's fast, inexpensive, no ion
milling, and produces superb samples. See the link to our application note
for a description of the technique and how to do it,
http://southbaytech.com/appnotes/62%20The%20Small%20Angle%20Cleavage%20Techn
ique%20An%20Update.pdf There are a few other application notes related to
SACT that we have, but this is the one that tells you how to do it.

In about the time that it takes to glue your samples and cut your samples,
you could have about 9 great samples using SACT ready to go into the
microscope.


Disclaimer: SBT manufactures and sells the MicroCleave(TM) Kit.

-Scott

Scott D. Walck, Ph.D.
Technical Director
South Bay Technology, Inc.
1120 Via Callejon
San Clemente, CA 92673

eMail: SWalck-at-SouthBayTech.com
Phone: 949-492-2600
Toll Free: 1-800-728-2233 (USA)
Fax: 949-492-1499

www.SouthBayTech.com



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Email: mlibarra27-at-gmail.com Name: Maria Lujan Ibarra

Title-Subject: [Filtered] Preparation of TEM cross sections of
Semiconductors

Message: Hi

I need to prepare cross section of SiSiO2 for TEM but the epoxy that is in
in the lab is very old. I
need to buy an adhesive . Can anyone tell me the name of the epoxy that use
for cross section and
ion milling?
I have an adhesive that we use to space applications: down corning 93500,
someone suggest to me that
I can use it for TEM. Can anyone tell me if its apropiate for that use?

Thanks for your help in advance!!

Maria Lujan



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From: microwink-at-gmail.com
Date: Fri, 7 Oct 2011 21:17:27 -0500
Subject: [Microscopy] Re: viaWWW:Preparation of TEM cross sections of Semiconductors

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Maria,

Epotek 353ND is the common epoxy used to glue up x-section sandwiches.
It gives a very thin glue line, usually between 1 and 5 microns
across. Gatan G1 is the other common epoxy, but in fact it is just
re-bottled 353ND. Be sure to mix the two parts by weight using a
precision balance and to test the curing before applying the epoxy to
your sample. I'm not sure whether the 93-500 is a good substitute for
the 353ND. Perhaps you can test the 93-500 by gluing together some
pieces of epi-polished, junk silicon and see how well they hold up
during grinding and polishing?

Alternatively, you may have success using the micro cleavage technique
to obtain high quality cross sections of your samples since you are
working with silicon. This requires a deft hand but avoids the hassles
of gluing, grinding, polishing, and ion milling, and eliminates
sources of artifacts induced by the aforementioned sample prep. steps.

Good luck,
Chris

On Fri, Oct 7, 2011 at 9:59 PM,
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} Title-Subject: [Filtered] Preparation of  TEM cross sections of Semiconductors
}
} Message: Hi
}
} I need to prepare cross section of SiSiO2 for TEM but the epoxy that is in in the lab is very old. I
} need to buy an adhesive . Can anyone tell me the name of the epoxy that use for cross section and
} ion milling?
} I have an adhesive that we use to space applications: down corning 93500, someone suggest to me that
} I can use it for TEM.  Can anyone tell me if its apropiate for that use?
}
} Thanks for your help in advance!!
}
} Maria Lujan
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From: colijn.1-at-osu.edu
Date: Sat, 8 Oct 2011 06:14:18 -0500
Subject: [Microscopy] Re: viaWWW:Preparation of TEM cross sections of

Contents Retrieved from Microscopy Listserver Archives
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Hi Maria,

The original article by Bravman and Sinclair used "MBond 610" strain
gauge epoxy. It formed a very thin glue line (~200nm) and milled at
about the same rate as Si. You should be able to purchase MBond 610
from some ot the EM supply houses or from the manufacturer (Vishay
Precision Group)

If you are doing conventional ion milling, you want to grind and dimple
as thin as possible before ion milling. Also you want to avoid, as much
as possible, having the ion beam parallel to the glue line. Some ion
mills have a sector control which will either go quickly through the
appropriate angles or avoid them altogether. If you ion mill doesn't
have a sector control for the rotation, you can put some beam blocks (I
used graphite) in line with the glue interface to shield it from the ions.

Cheers,
Henk


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} I have an adhesive that we use to space applications: down corning 93500, someone suggest to me that
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--
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 10 Oct 2011 08:38:49 -0500
Subject: [Microscopy] viaWWW:Preparation of cultured cells for TEM

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Email: kaszas.1-at-osu.edu Name: Andrea Kaszas

Organization: Ohio State University/OARDC

Title-Subject: [Filtered] Preparation of cultured cells for TEM

Message: Hi,

We have a researcher who would like to see his swine and chicken cultured cells on the TEM.
He cultured the cells on Thermonox Plastic Coverslips Nunc 174950.
I made the preparation of these cultured cells for transmission electron microscope according to
Carol Heckman's protocol. I embedded them in EM-Bed 812 resin. After polymerization I could not
separate the coverslip from the resin. I would like to ask if anybody embedded cultured cells
recently? I ask recently, because resins components are changed by the vendor and they do not work
the same as before. Any suggestions are highly appreciated.
Andrea Kaszas
research assistant
OSU/OARDC
Wooster,OH

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From: stefan.diller-at-t-online.de
Date: Mon, 10 Oct 2011 09:59:53 -0500
Subject: [Microscopy] Denka LaB6 cathode mounting

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Dear All,
I tried to mount a Denka M-3 LaB6 cathode to a Philips EM 420 wehnelt ( I also use the same wehnelt configuration in my 525 SEM,
interchanging the cathodes, when needed). That`s the first time I tried using Denka cathodes, the last three ones had been Kimball.
Can somebody please advice me for the correct heating setting (Kimball had been ca. 12 to 14 on the Philips EM420) and also give
me a hint on the correct distance to wehnelt? It seems somewhat different to the Kimball settings and - most disturbing - I can
only get a glimpse of green light on the screen during the first 2 or 3 steps of heating, then the cathodes drifts away. I tried
this various times, with a wehnelt distance of ca. 0,5 to 0,3mm and re-centering the cathode as good as possible.

Any ideas?

Thanks, Stefan

--
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From: stefan.diller-at-t-online.de
Date: Mon, 10 Oct 2011 11:10:14 -0500
Subject: [Microscopy] Re: Denka LaB6 cathode mounting

Contents Retrieved from Microscopy Listserver Archives
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Dera Vitaly,
thanks for your important notes.
I use a 0.5 mm aperture. I suppose the cathode-wehnelt distance should be ca. 0.7mm ?
Do you know if the Denka M-3 needs a lower heating current than the Kimball version?
Sure, I know to heat for saturation, but at this state of alignment I can`t see the cathode very well ;-)
And I am out of range with the x + y gun tilts, just as you said.


Thanks,
Stefan

-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 10.10.11 17:36, schrieb Vitaly Feingold:
} Tip to Wehnelt aperture distance depends somewhat on the size of aperture. Safe Wehnelt distance is 0.3mm for a 0.2mm aperture.
} You may increase distance of course but this will limit emission current.
}
} Too short distance especially with larger apertures will cause avalanche-like emission. Impulses of maxed-out emission current
} accompanied by flashes of bright light on TEM phosphor screen. A 0.2mm distance with 0.5mm aperture will sure cause this effect.
}
} I sometimes encounter new cathode that warps when heated. Exactly what you see. Though this was more common for Kimball Physics at
} least in my experience. There are 4 ways of dealing with it:
}
} 1) replace cathode;
}
} 2) install larger aperture and increase distance proportionaly;
}
} 3) replace components (resistors and/or potentiometers) in the gun tilt circuit for increasing gun tilt range;
}
} 4) center cathode perfectly and then start heating it and adjust gun tilt as you go. If gun tilt pot (or both) will max out before
} cathode saturation achieved - write down the potentiometers position, turn heating and HT off, pull Wehnelt out and intentionally
} de-center cathode tip about 20% to 30% of the radius and note in which direction (any will do for start) and then try again. It
} takes me 3 tries at most to find correct position for cathode. Basically you determine where to set the tip so that warping will
} put it back to center or close enough to be compensated with gun tilt.
}
} I note the position by drawing a circle on paper depicting aperture surrounded with numbers 0 to 9 (numbers on Wehnelt cap) and
} will put a dot in this circle which marks initial position of the tip. Then write positions of gun tilt potentiometer next to it
} after first try. After 2 attempts you will either get it right or will have only one possible direction left. Sort of triangulation.
}
} Vitaly Feingold
} SIA
} 2773 Heath Lane
} Duluth GA 30096
} Ph. 770-232-7785
} Fax 770-232-1791
} www.sia-cam.com
} vitaly-at-sia-cam.com
}
} On 10/10/2011 11:01 AM, stefan.diller-at-t-online.de wrote:
} } ----------------------------------------------------------------------------
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} }
} } Dear All,
} } I tried to mount a Denka M-3 LaB6 cathode to a Philips EM 420 wehnelt ( I also use the same wehnelt configuration in my 525 SEM,
} } interchanging the cathodes, when needed). That`s the first time I tried using Denka cathodes, the last three ones had been Kimball.
} } Can somebody please advice me for the correct heating setting (Kimball had been ca. 12 to 14 on the Philips EM420) and also give
} } me a hint on the correct distance to wehnelt? It seems somewhat different to the Kimball settings and - most disturbing - I can
} } only get a glimpse of green light on the screen during the first 2 or 3 steps of heating, then the cathodes drifts away. I tried
} } this various times, with a wehnelt distance of ca. 0,5 to 0,3mm and re-centering the cathode as good as possible.
} }
} } Any ideas?
} }
} } Thanks, Stefan
} }
}

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From: donovan-at-uoregon.edu
Date: Mon, 10 Oct 2011 12:31:05 -0500
Subject: [Microscopy] MicroAnalytical Research Assistant Search

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The following position is still open for applications at the CAMCOR
shared user facility at the University of Oregon.

http://camcor.uoregon.edu/

Please contact John Donovan for details.

mailto:donovan-at-uoregon.edu

The MicroAnalytical Research Assistant position provides professional
technical and scientific assistance to support the CAMCOR
MicroAnalytical laboratory and associated Inorganic Sample
Preparation Laboratory under the direction and instruction of the
MicroAnalytical Facility Director. As an entry level position, the
MicroAnalytical Research Assistant will be expected to learn all
necessary techniques and methods through self-instruction, tutoring,
classes, professional development, scientific conferences, and other
educational opportunities as available.

The MicroAnalytical Research Assistant will be expected to maintain
the instrument laboratory and sample preparation areas, prepare
samples of a geological, materials and archeological nature using a
variety of sample preparation techniques. The MicroAnalytical
Research Assistant will also operate optical and stereo microscopes
and perform qualitative and quantitative analysis using a scanning
electron microscope (FEI Quanta FEG SEM) and two electron probe micro
analysis instruments (Cameca SX50 EPMA and SX100 EPMA).

The MicroAnalytical Research Assistant will also provide assistance,
supervision and instruction for students, faculty and commercial
visitors using the shared laboratories, optical microscopes,
computers, scanners and other shared laboratory equipment. The
MicroAnalytical Research Assistant will provide computer backup and
file sharing maintenance and support for the MicroAnalytical
Facility. Complete details and application procedure at
http://academicjobsonline.org.

Duties:
Sample Preparation/Coating/Sputtering:

50% Sample Preparation for MicroAnalytical Facility: Cutting,
grinding, cleaving, mounting, embedding, and polishing and coating of
a wide variety of samples for use in the Microanalytical Facility.
Both grain mounts, polished thick and thin sections and standard
materials for calibration of the instruments. Vibratory polishing and
etching for EBSD samples. Coating using a variety of sputter and
evaporation coaters.

Sample preparation using tripod polishing, ultra-microtome, FIB and
Electron Beam Lithography will also be required on occasion.

Instrument operation for MicroAnalytical:

30% Instrument Operation for MicroAnalytical Facility: Operate
variable pressure FEG SEM and electron microprobes for imaging,
mapping and quantitative analysis on a wide variety of samples and
materials including thin films, archeological samples, geological
samples, and photo-voltaic, semi-conductor, thermo-electric, super
conductor and other bulk materials.

Operate energy dispersive spectrometers (EDS), electron backscatter
detector (EBSD), cathodo-luminescence (CL) and utilize Peltier cold
and hot stages for in-situ SEM experiments.

General facility support and assistance:

10% Computer Backup and Laboratory Maintenance: Manage instrument and
shared computers in MicroAnalytical facility. Perform operating
system updates, anti-virus updates, file maintenance, access
security, user management on secure data servers, purchase parts and
consumables for the MicroAnalytical Facility and Inorganic
Preparation Laboratory as needed. Work with on-site instrument
engineer and electronic engineer as necessary to assist in
maintaining all laboratory equipment.

10% Tours, Workshops and Outreach: Conduct technical tours of the
facility for community, industry, prospective student and other
visitors. Support middle and high school and community college
outreach efforts. Organize and support semi-annual workshops and
topical conferences for the MicroAnalytical Facility. Other duties as assigned.

Qualifications: Bachelor's degree in a science related field and
three years of experience in a laboratory and microscopy related
field or Master's degree in a science related field and one year
experience in a laboratory and microscopy related field.

Preferred ability in:
Experience in sample preparation for EPMA and SEM, including epoxies,
adhesives, vacuum impregnation, hot plate mounting with Petropoxy,
thin sectioning, polishing with water/alcohol based diamond abrasives.

Operation of metallic/carbon evaporators and sputter coaters, fume
hoods, spinners, etchers, and knowledge of proper handling and
storing of chemicals.

Technical/scientific programming and computing management and
applications. Norton Ghost for automated backup of data storage.

Demonstrated ability in:
Following prescribed procedures, communicate effectively verbally and
in writing.

Providing efficient and professional laboratory assistance in a fast
paced environment. Effectively managing and prioritizing competing
demands and keeping shared laboratory facilities at high levels of
organization, cleanliness and safety levels. Absorbing a high level
of technical details quickly.

The successful candidate will have the ability to work effectively
with faculty, staff and students from a variety of diverse backgrounds.

Salary: Salary will be commensurate with qualifications and
experience. This is a 0.5 FTE position. There is the possibility that
the FTE may increase in the future depending on funding, performance
and departmental need.

Application: http://academicjobsonline.org

Please include contact information for three professional references.
Review of applications will begin September 27, 2011, and continue
until a sufficient pool of qualified applicants is obtained or until
the position is filled. This announcement is available in alternate
formats upon request. If you are a qualified applicant with a
disability and need accommodation with the application process,
please call (541) 346-3159. If you need accommodation for the
interview, please notify the Business Affairs Office if an interview
is scheduled.

An Equal-Opportunity, Affirmative-Action Institution Committed to
Cultural Diversity and Compliance with the Americans with Disabilities Act.

John Donovan
Director- Microanalytical Facility
CAMCOR-UofO
541-346-4632
donovan-at-uoregon.edu
www.camcor.uoregon.edu
www.epmalab.uoregon.edu


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From: patpxs-at-gmail.com
Date: Mon, 10 Oct 2011 14:07:23 -0500
Subject: [Microscopy] MT2-B x 2 and sandbag table free to good home

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Listers,

Up for grabs are 2 MT2-B's and one old style sandbag anti-vibration table.

I cannot guarantee that the MT2-Bs (with the binoculars and little
table the binoc's sit on) work, but they would be great for parts.

The sandbag table is in good shape and the sandbags are intact. I know
this since I took the table apart and moved each sandbag individually,
whew!

If you want them, you must pay for shipping or come and pick them up.

First come, first served.

Thanks,

Paula :-)

--
Paula Sicurello, HTL (ASCP)
Supervisor, Electron Microscope Laboratory
Duke University Health System
Rm.#251M, Duke South, Green Zone
Durham, North Carolina 27710
P:  919.684.2091


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From: jehrman-at-mta.ca
Date: Wed, 12 Oct 2011 08:10:34 -0500
Subject: [Microscopy] vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Listers,

This is a bit embarrassing, but I've been bothered by this long enough.
Check out this picture of the vacuum gauge from my vacuum evaporator:

http://www.mta.ca/dmf/download/jme/imgp0520a.jpg

My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
feeling for typical vacuum system performance tells me it's the former,
but the labeling on the gauge is somewhat ambiguous. Does the large
"10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
I've used didn't leave this open to interpretation.

Thanks in advance to those who respond and help dispel my uneasiness...

Jim


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

You are what you eat.
So stay away from the jerk chicken.


==============================Original Headers==============================
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From: vray-at-partbeamsystech.com
Date: Wed, 12 Oct 2011 08:23:47 -0500
Subject: [Microscopy] Re: vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

My money is on 2E-5 Torr, based on layout of the scale and min/max
values....

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 10/12/2011 9:11 AM, jehrman-at-mta.ca wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Listers,
}
} This is a bit embarrassing, but I've been bothered by this long enough.
} Check out this picture of the vacuum gauge from my vacuum evaporator:
}
} http://www.mta.ca/dmf/download/jme/imgp0520a.jpg
}
} My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
} feeling for typical vacuum system performance tells me it's the former,
} but the labeling on the gauge is somewhat ambiguous. Does the large
} "10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
} I've used didn't leave this open to interpretation.
}
} Thanks in advance to those who respond and help dispel my uneasiness...
}
} Jim
}
}

==============================Original Headers==============================
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From: frank_karl-at-ardl.com
Date: Wed, 12 Oct 2011 08:26:26 -0500
Subject: [Microscopy] IGNORE- Looking for out of town messages- Firewall changed TEST

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

TEST

Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



________________________________
This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.


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From: bernardi-at-tuwien.ac.at
Date: Wed, 12 Oct 2011 08:41:06 -0500
Subject: [Microscopy] vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,

its a logarithmic scale. The big 10-5 means 10 x 10-6.
So the shown value is 2x 10-6 Torr.

Jo

Am 12.10.2011 15:26, schrieb vray-at-partbeamsystech.com:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} My money is on 2E-5 Torr, based on layout of the scale and min/max
} values....
}
} Cheers :)
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063 - leave a message with call-back number
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
} Web: www.freudlabs.com
}
} On 10/12/2011 9:11 AM, jehrman-at-mta.ca wrote:
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Hi Listers,
} }
} } This is a bit embarrassing, but I've been bothered by this long enough.
} } Check out this picture of the vacuum gauge from my vacuum evaporator:
} }
} } http://www.mta.ca/dmf/download/jme/imgp0520a.jpg
} }
} } My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
} } feeling for typical vacuum system performance tells me it's the former,
} } but the labeling on the gauge is somewhat ambiguous. Does the large
} } "10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
} } I've used didn't leave this open to interpretation.
} }
} } Thanks in advance to those who respond and help dispel my uneasiness...
} }
} } Jim
} }
} }
}
}


--
Johannes Bernardi
University Service Centre for Electron Microscopy
Vienna University of Technology
Austria

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6, 20 -- Date: Wed, 12 Oct 2011 15:41:04 +0200
6, 20 -- From: Johannes Bernardi {bernardi-at-tuwien.ac.at}
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From: james.passmore-at-sealedair.com
Date: Wed, 12 Oct 2011 09:02:39 -0500
Subject: [Microscopy] Re: vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

On Wed, Oct 12, 2011 at 9:12 AM, {jehrman-at-mta.ca} wrote:
}
} http://www.mta.ca/dmf/download/jme/imgp0520a.jpg
}
} My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6?

2x10-6, or 2E-6 torr

}
} Does the large
} "10-5" on the meter indicate 10x10-5, or 1x10-5?

10-5 = 1x10-5, also expressed as 1E-5

In standard scientific notation, the prefix ("significand") is } =1,
but {10.  Therefore, when you get to 10x10-6 you would re-write it as
1x10-5



Jim Passmore
Research Associate
Sealed Air Corporation
james.passmore-at-sealedair.com
864-433-2927 voice
864-433-2205 fax


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From: john.robson-at-boehringer-ingelheim.com
Date: Wed, 12 Oct 2011 09:11:37 -0500
Subject: [Microscopy] vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I have a Denton system that uses the same vacuum gauge. The vacuum reading
shown is slightly less than 2 x10-5 torr. The right to left deflection of
the needle seems to cause problems for many users.

John A. Robson
Research Scientist
Boehringer Ingelheim Pharmaceuticals, Inc.

-----Original Message-----
X-from: jehrman-at-mta.ca [mailto:jehrman-at-mta.ca]
Sent: Wednesday, October 12, 2011 9:23 AM
To: Robson,John (AN) BIP-US-R

Hi Listers,

This is a bit embarrassing, but I've been bothered by this long enough.
Check out this picture of the vacuum gauge from my vacuum evaporator:

http://www.mta.ca/dmf/download/jme/imgp0520a.jpg

My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
feeling for typical vacuum system performance tells me it's the former,
but the labeling on the gauge is somewhat ambiguous. Does the large
"10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
I've used didn't leave this open to interpretation.

Thanks in advance to those who respond and help dispel my uneasiness...

Jim


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

You are what you eat.
So stay away from the jerk chicken.


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From: wesaia-at-iastate.edu
Date: Wed, 12 Oct 2011 09:39:32 -0500
Subject: [Microscopy] vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Seems like you have 2 received opinions on either side.

Without checking any more definitive resource, I would vote for 2x10-6. I have always understood the large numbers to be 1x10-y. The numbers in between would be added to the large label on their left.

Warren

-----Original Message-----
X-from: jehrman-at-mta.ca [mailto:jehrman-at-mta.ca]
Sent: Wednesday, October 12, 2011 8:12 AM
To: wesaia-at-iastate.edu

Hi Listers,

This is a bit embarrassing, but I've been bothered by this long enough.
Check out this picture of the vacuum gauge from my vacuum evaporator:

http://www.mta.ca/dmf/download/jme/imgp0520a.jpg

My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
feeling for typical vacuum system performance tells me it's the former,
but the labeling on the gauge is somewhat ambiguous. Does the large
"10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
I've used didn't leave this open to interpretation.

Thanks in advance to those who respond and help dispel my uneasiness...

Jim


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

You are what you eat.
So stay away from the jerk chicken.


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From: frank_karl-at-ardl.com
Date: Wed, 12 Oct 2011 10:03:53 -0500
Subject: [Microscopy] vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Cast my vote for 2X10-5. Here's why.
The air pressure is getting smaller, the amount of air is shrinking, if you will. It was at 10-3 and shrunk to 10-4 and now to 10-5. It's not "small" enough to be at 10-6, but it's smaller than 8x10-5, in fact it's around 2.2x10-5.
I don't mean to be insulting, but this is how I think of these scales. They aren't negative numbers, but they are below "zero" in our ordinary experience.


-----Original Message-----
X-from: wesaia-at-iastate.edu [mailto:wesaia-at-iastate.edu]
Sent: Wednesday, October 12, 2011 10:50 AM
To: Frank Karl

Seems like you have 2 received opinions on either side.

Without checking any more definitive resource, I would vote for 2x10-6. I have always understood the large numbers to be 1x10-y. The numbers in between would be added to the large label on their left.

Warren

-----Original Message-----
X-from: jehrman-at-mta.ca [mailto:jehrman-at-mta.ca]
Sent: Wednesday, October 12, 2011 8:12 AM
To: wesaia-at-iastate.edu

Hi Listers,

This is a bit embarrassing, but I've been bothered by this long enough.
Check out this picture of the vacuum gauge from my vacuum evaporator:

http://www.mta.ca/dmf/download/jme/imgp0520a.jpg

My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
feeling for typical vacuum system performance tells me it's the former,
but the labeling on the gauge is somewhat ambiguous. Does the large
"10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
I've used didn't leave this open to interpretation.

Thanks in advance to those who respond and help dispel my uneasiness...

Jim


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

You are what you eat.
So stay away from the jerk chicken.


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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Wed, 12 Oct 2011 10:10:21 -0500
Subject: [Microscopy] vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

like Jo said / wrote:

its a logarithmic scale. The big 10-5 means 10 x 10-6.
So the shown value is 2x 10-6 Torr.

Reinhard


--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29



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From: W.Muss-at-salk.at
Date: Wed, 12 Oct 2011 10:37:19 -0500
Subject: [Microscopy] Re: Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
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Dear listers and } combatants {,
dear Jim,


IMHO: practically (and logically) the scale is read from the right edge to the left ….
so if pressure is at {rough} value (poor vacuum), say “under 10^-3†(10^-2†not included in the scale)
and reaches at some time == } 8 x 10^-3(Torr),
the index needle (likely) overcasts/covers the first scale 'bar' at the most right side of the scale.…..

Following decreasing pressure in the recipient, you’ll get to/at
1. 10^-3 Torr, then 8 x 10^-4, 6x 10^-4, 4x 10^-4 Torr, and so forth, respectively…

So in my honest opinion, the value shown in the image correctly should be read as:


((☺) approx. )
2.125 (since depiction/distances of bars is/are logarithmic) x 10^-6 Torr (as some other have pointed out too but only without decimal digits... joke!)


best wishes and greetings

Wolfgang MUSS
SALZBURG-AUSTRIA






Von: jehrman-at-mta.ca [mailto:jehrman-at-mta.ca]
Gesendet: Mittwoch, 12. Oktober 2011 15:15
An: Muß Wolfgang
Betreff: [Microscopy] Vacuum gauge reading

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Hi Listers,

This is a bit embarrassing, but I've been bothered by this long enough.
Check out this picture of the vacuum gauge from my vacuum evaporator:

http://www.mta.ca/dmf/download/jme/imgp0520a.jpg


My question is:
what reading is the gauge giving? ~2x10-5 or ~2x10-6?

My feeling for typical vacuum system performance tells me it's the former, but the labeling on the gauge is somewhat ambiguous. Does the large "10-5" on the meter indicate 10x10-5, or 1x10-5?
Older Denton systems I've used didn't leave this open to interpretation.

Thanks in advance to those who respond and help dispel my uneasiness...

Jim


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

You are what you eat.
So stay away from the jerk chicken.

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From: John.Mardinly-at-asu.edu
Date: Wed, 12 Oct 2011 10:57:03 -0500
Subject: [Microscopy] Re: vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
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Hmmmm.....maybe MSA should have an afternoon tutorial next year on how to read vacuum gauges.

John Mardinly
ASU

On Oct 12, 2011, at 6:23 AM, "jehrman-at-mta.ca" {jehrman-at-mta.ca} wrote:

}
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}
} Hi Listers,
}
} This is a bit embarrassing, but I've been bothered by this long enough.
} Check out this picture of the vacuum gauge from my vacuum evaporator:
}
} http://www.mta.ca/dmf/download/jme/imgp0520a.jpg
}
} My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
} feeling for typical vacuum system performance tells me it's the former,
} but the labeling on the gauge is somewhat ambiguous. Does the large
} "10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
} I've used didn't leave this open to interpretation.
}
} Thanks in advance to those who respond and help dispel my uneasiness...
}
} Jim
}
}
} --
}
} James M. Ehrman
} Digital Microscopy Facility
} Mount Allison University
} 63B York St.
} Sackville, NB E4L 1G7
} CANADA
}
} phone: 506-364-2519
} fax: 506-364-2505
} email: jehrman-at-mta.ca
} www: http://www.mta.ca/dmf
}
} You are what you eat.
} So stay away from the jerk chicken.
}
}
} ==============================Original Headers==============================
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From: jehrman-at-mta.ca
Date: Wed, 12 Oct 2011 11:16:54 -0500
Subject: [Microscopy] vacuum gauge reading (so far)

Contents Retrieved from Microscopy Listserver Archives
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Listers,

I've been keeping a tally of responses - so far 10-6 is ahead of 10-5,
but not by much and not statistically significantly so. IMHO all
responses have made perfect sense - the same way that my schizophrenic
confusion on one hand says one value is right but then the other says it
certainly must be the other value. I think the only resolution will come
from:

1. Asking Denton directly (hopefully I won't get two different responses!)
2. More definitively, rounding up a McLeod gauge.

Another possible solution would be to measure the actual voltage going
through the cold cathode head - if only I knew what the values
represented! According to the schematics, this is a Balzers IKR 250 cold
cathode gauge. Does anybody know what the ballpark voltages should be
for the two pressures?

I'll let you know what, if anything I find out. Bad news is, half of you
are going to be disappointed.

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

"It's 5:50 a.m., Do you know where your stack pointer is?"


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From: Tracy.Lawrence-at-inspection.gc.ca
Date: Wed, 12 Oct 2011 11:37:11 -0500
Subject: [Microscopy] vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
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I want to add my opinion to the pool.

I read the large 10-y as 1 x 10-y so the reading in question, as I see it, is 2 x 10-5.

Tracy Lawrence
CFIA
BC



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From: raristau-at-ims.uconn.edu
Date: Wed, 12 Oct 2011 11:50:51 -0500
Subject: [Microscopy] Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
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This has been a fun thread to follow....

With all humility and respect, it is plain that Jim is not the only one
confused by these gauges. I have stared at a meter for many minutes many
times as I tried to sort this out in my own head.

Vacuum gauges, whether measuring current, voltage, resistance, etc. are just
like most other meters: The lower, or smaller, or least magnitude values are
on the left, the larger on the right. It is just that the pressure gauge
starts with the needle pointing to the larger value on the right (closer to
atmospheric pressure), and moves to the smaller value end of the meter on
the left as the pumps improve the vacuum. We are more accustomed to most
other sorts of gauges in which the needle starts by pointing to the smaller
magnitude on the left and moves left to right as the gadget it is attached
to does its stuff.

Therefore, the vacuum meter reading, as the needle moves to the left of the
tic that is marked 10e-5 (= 1 x 10e-5), has reached the 10e-6 range. Note
that the scale shows 8 (x 10e-6) to the right of 6 (x 10e-6), that is, the
larger magnitude to the right of the smaller magnitude. The meter in Jim's
image is reading just a hair higher than 2 x 10e-6.

Of course, not content to leave well enough alone, we create most of our own
confusion when we refer to "higher vacuum" as the state when the magnitude
of pressure is "lower", and "lower vacuum" when the pressure reading is of
"higher" magnitude. But that is another thread...

With smiles
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




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From: jkrupp-at-deltacollege.edu
Date: Wed, 12 Oct 2011 12:00:30 -0500
Subject: [Microscopy] Re: Vacuum gauge reading

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I think it is 2 * 10^-6.

The line spacing for the increments 2,4,6,8 look like a logarithmic scale that is increasing from left to right.

Stefanie

----- Original Message -----
X-from: John.Mardinly-at-asu.edu

Wow, so I guess all the time we spend drilling our students on how to read vacuum gauges is time well spent!

Not all of them get it at first, but we are trying.

Jon


Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: bigelow-at-umich.edu
Date: Wed, 12 Oct 2011 12:26:41 -0500
Subject: [Microscopy] RE; Vac Gauge reading

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Listers:

This is an interesting question and has generated a bunch of
interesting answers. Traditionally, the 10-x point would be
interpreted as the upper end of the 10-x range, so that on pumping
down, when you pass below the 10-x point you are into the 10-x range.
On this basis the reading shown would be 2 x 10-5 Torr.

However, just to get an authoritative answer I have forwarded Joim's
original message to info-at-dentonvacuum.com. Let's see what response
we get.
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: jehrman-at-mta.ca
Date: Wed, 12 Oct 2011 12:43:52 -0500
Subject: [Microscopy] Re: Vacuum gauge reading

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OK, I want to reply to this response, not that Roger is saying anything
wrong, but just that he along with several others are misunderstanding
my question, in several different ways. A few points:

1. Yes, this vacuum gauge, like a lot of others (but certainly not all)
work "backward". I completely understand this. The pumping system starts
out at poor (= high pressure = more air/gas) with the needle on the
gauge pointing to the right. As the vacuum improves (= lower pressure =
less air/gas) the needle moves slowly to the left. Some who are only
shown my image and haven't seen the needle move might try to read the
gauge from left to right and get the order of magnitude of the reading
wrong. But I'm not doing that, and this isn't my question/problem.

2. The essence of the problem is the labeling (or lack thereof) on the
gauge. What boundary does the large "10-5" represent? In "official"
scientific notation (as several responders have pointed out) this label
should refer to 1x10-5, in which case, the gauge needle moving right to
left as the vacuum improves to the time the image was captured would
indicate ~2x10-6. It is very natural and certainly understandable to
interpret the gauge this way. But there is a different interpretation
(apparently the position of several other responders). The label "10-5"
could symbolize "you are now entering the 10-5 range" (remembering that
the needle moves from right to left as vacuum improves), in which case
the label refers to 10x10-5 = 1X10-4. Under this scheme the gauge in my
picture is reading ~2x10-5. This is also a perfectly understandable
interpretation. If I look at a digital vacuum gauge (like on our SEM)
and it drops down to 9.9x10-5, I'm comfortable thinking that the vacuum
has entered the 10-5 range, even though it physically has more in common
with a 10-4 vacuum.

3. In my initial message I wrote that I suspected that 2x10-5 was more
likely based on the performance of other vacuum systems I've known. The
image was taken 5 or 10 minutes after the main valve was opened on the
vacuum evaporator, from a cold start, with no LN2 in the cold trap.
2x10-5 seems to be a reasonable vacuum under these circumstances, but
2x10-6 would seem less probable. Adding LN2 to the cold trap drops the
vacuum down into the next leftmost range (either 10-6 or 10-7, depending
on your interpretation of the labeling). Neither of these possible
vacuums is impossible, but a 10-6 value in the relatively early stages
of cryopumping would seem the more likely. So my feeling based on the
behavior of the pumps themselves was that "10-5" actually indicates
10x10-5 and not 1x10-5. But others (both in this thread and visitors to
the lab) have insisted the opposite, i.e. that the gauge reading in my
picture must be 2x10-6. Hence my dilemma.

I hope this clarifies things.

JME


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

"It's 5:50 a.m., Do you know where your stack pointer is?"



On 12/10/2011 1:51 PM, raristau-at-ims.uconn.edu wrote:
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} ----------------------------------------------------------------------------
}
} This has been a fun thread to follow....
}
} With all humility and respect, it is plain that Jim is not the only one
} confused by these gauges. I have stared at a meter for many minutes many
} times as I tried to sort this out in my own head.
}
} Vacuum gauges, whether measuring current, voltage, resistance, etc. are just
} like most other meters: The lower, or smaller, or least magnitude values are
} on the left, the larger on the right. It is just that the pressure gauge
} starts with the needle pointing to the larger value on the right (closer to
} atmospheric pressure), and moves to the smaller value end of the meter on
} the left as the pumps improve the vacuum. We are more accustomed to most
} other sorts of gauges in which the needle starts by pointing to the smaller
} magnitude on the left and moves left to right as the gadget it is attached
} to does its stuff.
}
} Therefore, the vacuum meter reading, as the needle moves to the left of the
} tic that is marked 10e-5 (= 1 x 10e-5), has reached the 10e-6 range. Note
} that the scale shows 8 (x 10e-6) to the right of 6 (x 10e-6), that is, the
} larger magnitude to the right of the smaller magnitude. The meter in Jim's
} image is reading just a hair higher than 2 x 10e-6.
}
} Of course, not content to leave well enough alone, we create most of our own
} confusion when we refer to "higher vacuum" as the state when the magnitude
} of pressure is "lower", and "lower vacuum" when the pressure reading is of
} "higher" magnitude. But that is another thread...
}
} With smiles
} Roger
}
} Roger A. Ristau, PhD
} Electron Microscopy Specialist
} Institute of Materials Science
} 97 North Eagleville Road
} University of Connecticut
} Storrs, CT 06269
} vox: 860-486-5453
} fax: 860-486-4745
}
}
}
}
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--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

"It's 5:50 a.m., Do you know where your stack pointer is?"


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From: raristau-at-ims.uconn.edu
Date: Wed, 12 Oct 2011 11:53:12 -0500
Subject: [Microscopy] Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
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A follow-up on my previous message: (I can't get enough "out-of-office"
replies!)

A tic marked 10e-6 means 1 x 10e-6.
It makes no sense for it to represent 10 x 10e-6; that is an "improper
fraction".

Cheers all
Roger

------ Forwarded Message
X-from: {raristau-at-ims.uconn.edu}
Reply-To: {raristau-at-ims.uconn.edu}

This has been a fun thread to follow....

With all humility and respect, it is plain that Jim is not the only one
confused by these gauges. I have stared at a meter for many minutes many
times as I tried to sort this out in my own head.

Vacuum gauges, whether measuring current, voltage, resistance, etc. are just
like most other meters: The lower, or smaller, or least magnitude values are
on the left, the larger on the right. It is just that the pressure gauge
starts with the needle pointing to the larger value on the right (closer to
atmospheric pressure), and moves to the smaller value end of the meter on
the left as the pumps improve the vacuum. We are more accustomed to most
other sorts of gauges in which the needle starts by pointing to the smaller
magnitude on the left and moves left to right as the gadget it is attached
to does its stuff.

Therefore, the vacuum meter reading, as the needle moves to the left of the
tic that is marked 10e-5 (= 1 x 10e-5), has reached the 10e-6 range. Note
that the scale shows 8 (x 10e-6) to the right of 6 (x 10e-6), that is, the
larger magnitude to the right of the smaller magnitude. The meter in Jim's
image is reading just a hair higher than 2 x 10e-6.

Of course, not content to leave well enough alone, we create most of our own
confusion when we refer to "higher vacuum" as the state when the magnitude
of pressure is "lower", and "lower vacuum" when the pressure reading is of
"higher" magnitude. But that is another thread...

With smiles
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




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From: bozzola-at-siu.edu
Date: Wed, 12 Oct 2011 12:59:12 -0500
Subject: [Microscopy] Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
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I would report the vacuum reading as 2 x 10-5 Torr. That's what I was
consistently taught by service engineers and professional
microscopists over many years.

We have a Denton vacuum evaporator (oil diffusion pump) with a large
bell jar. Under ideal conditions, it can achieve a final vacuum of 2 x
10-5 (just like the reading shown in the photo). That's what is stated
in the manual that came with it. If one adds liquid nitrogen to the
trap, it can enter the 10-6 range and ultimately reach 2-3 x 10-6
Torr.

So, if the photo is from a diffusion pumped system (without LN2), then
2 x 10-5 would be the most likely reading (just based on ultimate
capability alone).

I am enjoying this discussion. It just points out we do not always
agree on things in the realm of science. We can all learn from this.

John Bozzola

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From: frank_karl-at-ardl.com
Date: Wed, 12 Oct 2011 13:07:46 -0500
Subject: [Microscopy] RE; Vac Gauge reading

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Okay, I'm having fun with this so let me boot in another thought experiment.

Imagine we're at the far right of the meter at 760 torr. Lower the pressure and the meter reads 759. Lets do this until we reach 1 torr. lower the pressure to 0.9 torr and the meter would read 9x10-1. Lower the pressure more and the mete reads 1x10-1. So far so good. Another step and we are at 0.9X10-1 or 9X10-2. Repeat that process enough and we cross over from 1 x10-4 to 0.9x10-4 or 9x10-5 eventually we get to our needle reading.


This makes 4 cents I've kicked in and by now you are forewarned. As the experts say to be forewarned is forearmed. Four arms is both an even number and an odd number of arms to have. The only number both odd and even is infinity. Stealing shamelessly from the journal of Irreproducible results I've exhausted my ideas.

Frank


-----Original Message-----
X-from: bigelow-at-umich.edu [mailto:bigelow-at-umich.edu]
Sent: Wednesday, October 12, 2011 1:34 PM
To: Frank Karl

Listers:

This is an interesting question and has generated a bunch of
interesting answers. Traditionally, the 10-x point would be
interpreted as the upper end of the 10-x range, so that on pumping
down, when you pass below the 10-x point you are into the 10-x range.
On this basis the reading shown would be 2 x 10-5 Torr.

However, just to get an authoritative answer I have forwarded Joim's
original message to info-at-dentonvacuum.com. Let's see what response
we get.
--
Wilbur C. Bigelow, Professor Emeritus
Materials Sci. & Engr., Univ. of Michigan
Ann Arbor, Michigan 48109-2136
e-mail: bigelow-at-umich.edu;
Fx:734-763-4788; Ph:734-975-0858
Address mail to: 2911 Whittier Court
Ann Arbor, MI 48104-6731

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From: jehrman-at-mta.ca
Date: Wed, 12 Oct 2011 13:22:36 -0500
Subject: [Microscopy] vacuum gauge reading - reminds me of a movie

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Sorry, I just can't resist. From the movie 'Aliens':

Vasquez: They're right on us.
Hicks: [waiting for the Aliens]: Remember, short controlled bursts.
Hudson: 9 meters. 7. 6.
Ripley: That can't be; that's inside the room.
Hudson: It's reading right man, look!
Hicks: Then you're not reading *it* right.
Hudson: 5 meters, man 4. What the hell?

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

"It's 5:50 a.m., Do you know where your stack pointer is?"


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From: tina-at-pbrc.hawaii.edu
Date: Wed, 12 Oct 2011 13:23:30 -0500
Subject: [Microscopy] Re: vacuum gauge reading (so far)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Wow, I've always read these a certain way, but now I see where there might
be some confusion.

On my equipment I've put little arrows with labels: pointing right =
"worse" and pointing left = "better" to show which way the gauges go. So I
see 2x10-5.

Aloha,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: raristau-at-ims.uconn.edu
Date: Wed, 12 Oct 2011 11:53:12 -0500
Subject: [Microscopy] Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

OK here comes Roger v1.3...

I admit to being a little blindsided by Jim's original posting, but I hope
no harm was done by my erring on the side of "didaction for dummies". Excuse
me if I did. My excuse: I am accustomed to educating graduate students.

Jim, if your sense is that the time of pumping was insufficient to reach
10e-6 range, therefore the meter MUST be displaying 2 x 10e-5, perhaps there
is an issue of inaccurate, uncalibrated, or otherwise deficient gauges. (Or
a really fast pump.) Most thermocouple and ionizing gauges will become
inaccurate through buildup of surface deposits on the gauge. Also they are
calibrated for specific gases; a different gas composition will result in an
inaccurate gauge.

All my money is still on 2 x 10e-6. HOWEVER, one caveat: If we get word from
the maker of the meter and they meant 10e-6 = 10 x 10e-6, then I withdraw my
wager. But I would still insist that is an improper way to label the meter.

Still cheerful
Roger


------ Forwarded Message
X-from: Roger Ristau {raristau-at-ims.uconn.edu}

This has been a fun thread to follow....

With all humility and respect, it is plain that Jim is not the only one
confused by these gauges. I have stared at a meter for many minutes many
times as I tried to sort this out in my own head.

Vacuum gauges, whether measuring current, voltage, resistance, etc. are just
like most other meters: The lower, or smaller, or least magnitude values are
on the left, the larger on the right. It is just that the pressure gauge
starts with the needle pointing to the larger value on the right (closer to
atmospheric pressure), and moves to the smaller value end of the meter on
the left as the pumps improve the vacuum. We are more accustomed to most
other sorts of gauges in which the needle starts by pointing to the smaller
magnitude on the left and moves left to right as the gadget it is attached
to does its stuff.

Therefore, the vacuum meter reading, as the needle moves to the left of the
tic that is marked 10e-5 (= 1 x 10e-5), has reached the 10e-6 range. Note
that the scale shows 8 (x 10e-6) to the right of 6 (x 10e-6), that is, the
larger magnitude to the right of the smaller magnitude. The meter in Jim's
image is reading just a hair higher than 2 x 10e-6.

Of course, not content to leave well enough alone, we create most of our own
confusion when we refer to "higher vacuum" as the state when the magnitude
of pressure is "lower", and "lower vacuum" when the pressure reading is of
"higher" magnitude. But that is another thread...

With smiles
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




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From: kenconverse-at-qualityimages.biz
Date: Wed, 12 Oct 2011 11:53:12 -0500
Subject: [Microscopy] Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Roger just said everything I was going to say. If Denton did this
correctly, the gauge is reading 2x10E-6 (slightly higher pressure than
1x10E-6 to its left). If they screwed up the calibration, shame on them.
Being a cold cathode gauge it may be in need of both cleaning and
calibrating.

In my experience if the 1x10E-5 was to indicate the range (as on some Varian
gauges), then it would have been placed roughly over the 4 in the range that
was intended. If it is placed on the end of a range, it indicates 1x10E-?

My $.02

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: raristau-at-ims.uconn.edu [mailto:raristau-at-ims.uconn.edu]
Sent: Wednesday, October 12, 2011 2:32 PM
To: kenconverse-at-qualityimages.biz

OK here comes Roger v1.3...

I admit to being a little blindsided by Jim's original posting, but I hope
no harm was done by my erring on the side of "didaction for dummies". Excuse
me if I did. My excuse: I am accustomed to educating graduate students.

Jim, if your sense is that the time of pumping was insufficient to reach
10e-6 range, therefore the meter MUST be displaying 2 x 10e-5, perhaps there
is an issue of inaccurate, uncalibrated, or otherwise deficient gauges. (Or
a really fast pump.) Most thermocouple and ionizing gauges will become
inaccurate through buildup of surface deposits on the gauge. Also they are
calibrated for specific gases; a different gas composition will result in an
inaccurate gauge.

All my money is still on 2 x 10e-6. HOWEVER, one caveat: If we get word from
the maker of the meter and they meant 10e-6 = 10 x 10e-6, then I withdraw my
wager. But I would still insist that is an improper way to label the meter.

Still cheerful
Roger


------ Forwarded Message
X-from: Roger Ristau {raristau-at-ims.uconn.edu}

This has been a fun thread to follow....

With all humility and respect, it is plain that Jim is not the only one
confused by these gauges. I have stared at a meter for many minutes many
times as I tried to sort this out in my own head.

Vacuum gauges, whether measuring current, voltage, resistance, etc. are just
like most other meters: The lower, or smaller, or least magnitude values are
on the left, the larger on the right. It is just that the pressure gauge
starts with the needle pointing to the larger value on the right (closer to
atmospheric pressure), and moves to the smaller value end of the meter on
the left as the pumps improve the vacuum. We are more accustomed to most
other sorts of gauges in which the needle starts by pointing to the smaller
magnitude on the left and moves left to right as the gadget it is attached
to does its stuff.

Therefore, the vacuum meter reading, as the needle moves to the left of the
tic that is marked 10e-5 (= 1 x 10e-5), has reached the 10e-6 range. Note
that the scale shows 8 (x 10e-6) to the right of 6 (x 10e-6), that is, the
larger magnitude to the right of the smaller magnitude. The meter in Jim's
image is reading just a hair higher than 2 x 10e-6.

Of course, not content to leave well enough alone, we create most of our own
confusion when we refer to "higher vacuum" as the state when the magnitude
of pressure is "lower", and "lower vacuum" when the pressure reading is of
"higher" magnitude. But that is another thread...

With smiles
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




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From: r.sims-at-auckland.ac.nz
Date: Wed, 12 Oct 2011 11:53:12 -0500
Subject: [Microscopy] Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I can hardly believe that this is even debateable!

The gauge measures pressure (even though sub-atmospheric pressures are also called "vacuums").

Higher pressures are to the RHS, thus a pressure of 10exp-3 is a higher pressure than one of 10exp-9.

So, as the pressure decreases from 10exp-5, it goes: 1x10exp-5, 0.8x10exp-5 (ie 8x10exp-6), 0.6x10exp-5 (ie 6x10exp-6) etc etc.

I can't see that it is indicating anything but a smidgen above (pressure!) 0.2x10exp-5, ie 2x10exp-6, but maybe I'm just not seeing the problem clearly.

cheers
Ritchie Sims
University of Auckland




________________________________________
X-from: kenconverse-at-qualityimages.biz [kenconverse-at-qualityimages.biz]
Sent: 13 October 2011 08:13
To: Ritchie Sims

Roger just said everything I was going to say. If Denton did this
correctly, the gauge is reading 2x10E-6 (slightly higher pressure than
1x10E-6 to its left). If they screwed up the calibration, shame on them.
Being a cold cathode gauge it may be in need of both cleaning and
calibrating.

In my experience if the 1x10E-5 was to indicate the range (as on some Varian
gauges), then it would have been placed roughly over the 4 in the range that
was intended. If it is placed on the end of a range, it indicates 1x10E-?

My $.02

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: raristau-at-ims.uconn.edu [mailto:raristau-at-ims.uconn.edu]
Sent: Wednesday, October 12, 2011 2:32 PM
To: kenconverse-at-qualityimages.biz

OK here comes Roger v1.3...

I admit to being a little blindsided by Jim's original posting, but I hope
no harm was done by my erring on the side of "didaction for dummies". Excuse
me if I did. My excuse: I am accustomed to educating graduate students.

Jim, if your sense is that the time of pumping was insufficient to reach
10e-6 range, therefore the meter MUST be displaying 2 x 10e-5, perhaps there
is an issue of inaccurate, uncalibrated, or otherwise deficient gauges. (Or
a really fast pump.) Most thermocouple and ionizing gauges will become
inaccurate through buildup of surface deposits on the gauge. Also they are
calibrated for specific gases; a different gas composition will result in an
inaccurate gauge.

All my money is still on 2 x 10e-6. HOWEVER, one caveat: If we get word from
the maker of the meter and they meant 10e-6 = 10 x 10e-6, then I withdraw my
wager. But I would still insist that is an improper way to label the meter.

Still cheerful
Roger


------ Forwarded Message
X-from: Roger Ristau {raristau-at-ims.uconn.edu}

This has been a fun thread to follow....

With all humility and respect, it is plain that Jim is not the only one
confused by these gauges. I have stared at a meter for many minutes many
times as I tried to sort this out in my own head.

Vacuum gauges, whether measuring current, voltage, resistance, etc. are just
like most other meters: The lower, or smaller, or least magnitude values are
on the left, the larger on the right. It is just that the pressure gauge
starts with the needle pointing to the larger value on the right (closer to
atmospheric pressure), and moves to the smaller value end of the meter on
the left as the pumps improve the vacuum. We are more accustomed to most
other sorts of gauges in which the needle starts by pointing to the smaller
magnitude on the left and moves left to right as the gadget it is attached
to does its stuff.

Therefore, the vacuum meter reading, as the needle moves to the left of the
tic that is marked 10e-5 (= 1 x 10e-5), has reached the 10e-6 range. Note
that the scale shows 8 (x 10e-6) to the right of 6 (x 10e-6), that is, the
larger magnitude to the right of the smaller magnitude. The meter in Jim's
image is reading just a hair higher than 2 x 10e-6.

Of course, not content to leave well enough alone, we create most of our own
confusion when we refer to "higher vacuum" as the state when the magnitude
of pressure is "lower", and "lower vacuum" when the pressure reading is of
"higher" magnitude. But that is another thread...

With smiles
Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745




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From: colijn.1-at-osu.edu
Date: Wed, 12 Oct 2011 15:59:37 -0500
Subject: [Microscopy] Re: FW: Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,

Like Ritchie, I am surprised at the multitude of responses and
rationales for reading the pressure. The pressure reading is obvious
just by looking at the scale. You don't need to think about which way
the gauge moves or how things pump down. These are just red herrings!

The gauge is a PRESSURE gauge. It has an obvious logarithmic scale with
higher pressures to the right. The numbers between 10-6 and 10-5 are
the pressures between 1x10-6 and 1x10-5 (= 10x10-6).

The pressure is approx. 2x10-6 (or to coin a unit... 2 microtorr )

{/ on soapbox/} There is no doubt (and should be a very short
discussion!) {/off soapbox/}

Cheers,
Henk


At 10/12/2011 4:38 PM, r.sims-at-auckland.ac.nz wrote:
}
}
} ----------------------------------------------------------------------------
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} ----------------------------------------------------------------------------
}
} I can hardly believe that this is even debateable!
}
} The gauge measures pressure (even though sub-atmospheric pressures are also called "vacuums").
}
} Higher pressures are to the RHS, thus a pressure of 10exp-3 is a higher pressure than one of 10exp-9.
}
} So, as the pressure decreases from 10exp-5, it goes: 1x10exp-5, 0.8x10exp-5 (ie 8x10exp-6), 0.6x10exp-5 (ie 6x10exp-6) etc etc.
}
} I can't see that it is indicating anything but a smidgen above (pressure!) 0.2x10exp-5, ie 2x10exp-6, but maybe I'm just not seeing the problem clearly.
}
} cheers
} Ritchie Sims
} University of Auckland
}
}
}
}
} ________________________________________
} X-from: kenconverse-at-qualityimages.biz [kenconverse-at-qualityimages.biz]
} Sent: 13 October 2011 08:13
} To: Ritchie Sims
} Subject: [Microscopy] RE: FW: Vacuum gauge reading
}
} ----------------------------------------------------------------------------
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}
} Roger just said everything I was going to say. If Denton did this
} correctly, the gauge is reading 2x10E-6 (slightly higher pressure than
} 1x10E-6 to its left). If they screwed up the calibration, shame on them.
} Being a cold cathode gauge it may be in need of both cleaning and
} calibrating.
}
} In my experience if the 1x10E-5 was to indicate the range (as on some Varian
} gauges), then it would have been placed roughly over the 4 in the range that
} was intended. If it is placed on the end of a range, it indicates 1x10E-?
}
} My $.02
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME 04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: raristau-at-ims.uconn.edu [mailto:raristau-at-ims.uconn.edu]
} Sent: Wednesday, October 12, 2011 2:32 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] FW: Vacuum gauge reading
}
}
}
}
} ----------------------------------------------------------------------------
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}
} OK here comes Roger v1.3...
}
} I admit to being a little blindsided by Jim's original posting, but I hope
} no harm was done by my erring on the side of "didaction for dummies". Excuse
} me if I did. My excuse: I am accustomed to educating graduate students.
}
} Jim, if your sense is that the time of pumping was insufficient to reach
} 10e-6 range, therefore the meter MUST be displaying 2 x 10e-5, perhaps there
} is an issue of inaccurate, uncalibrated, or otherwise deficient gauges. (Or
} a really fast pump.) Most thermocouple and ionizing gauges will become
} inaccurate through buildup of surface deposits on the gauge. Also they are
} calibrated for specific gases; a different gas composition will result in an
} inaccurate gauge.
}
} All my money is still on 2 x 10e-6. HOWEVER, one caveat: If we get word from
} the maker of the meter and they meant 10e-6 = 10 x 10e-6, then I withdraw my
} wager. But I would still insist that is an improper way to label the meter.
}
} Still cheerful
} Roger
}
}
} ------ Forwarded Message
} X-from: Roger Ristau {raristau-at-ims.uconn.edu}
} Date: Wed, 12 Oct 2011 13:48:48 -0400
} To: "Microscopy-at-Microscopy.Com" {microscopy-at-microscopy.com}
} Conversation: [Microscopy] Vacuum gauge reading
} Subject: FW: [Microscopy] Vacuum gauge reading
}
} A follow-up on my previous message: (I can't get enough "out-of-office"
} replies!)
}
} A tic marked 10e-6 means 1 x 10e-6.
} It makes no sense for it to represent 10 x 10e-6; that is an "improper
} fraction".
}
} Cheers all
} Roger
}
} ------ Forwarded Message
} X-from: {raristau-at-ims.uconn.edu}
} Reply-To: {raristau-at-ims.uconn.edu}
} Date: Wed, 12 Oct 2011 11:53:12 -0500
} To: {raristau-at-ims.uconn.edu}
} Subject: [Microscopy] Vacuum gauge reading
}
}
}
}
} ----------------------------------------------------------------------------
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} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
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}
} This has been a fun thread to follow....
}
} With all humility and respect, it is plain that Jim is not the only one
} confused by these gauges. I have stared at a meter for many minutes many
} times as I tried to sort this out in my own head.
}
} Vacuum gauges, whether measuring current, voltage, resistance, etc. are just
} like most other meters: The lower, or smaller, or least magnitude values are
} on the left, the larger on the right. It is just that the pressure gauge
} starts with the needle pointing to the larger value on the right (closer to
} atmospheric pressure), and moves to the smaller value end of the meter on
} the left as the pumps improve the vacuum. We are more accustomed to most
} other sorts of gauges in which the needle starts by pointing to the smaller
} magnitude on the left and moves left to right as the gadget it is attached
} to does its stuff.
}
} Therefore, the vacuum meter reading, as the needle moves to the left of the
} tic that is marked 10e-5 (= 1 x 10e-5), has reached the 10e-6 range. Note
} that the scale shows 8 (x 10e-6) to the right of 6 (x 10e-6), that is, the
} larger magnitude to the right of the smaller magnitude. The meter in Jim's
} image is reading just a hair higher than 2 x 10e-6.
}
} Of course, not content to leave well enough alone, we create most of our own
} confusion when we refer to "higher vacuum" as the state when the magnitude
} of pressure is "lower", and "lower vacuum" when the pressure reading is of
} "higher" magnitude. But that is another thread...
}
} With smiles
} Roger
}
} Roger A. Ristau, PhD
} Electron Microscopy Specialist
} Institute of Materials Science
} 97 North Eagleville Road
} University of Connecticut
} Storrs, CT 06269
} vox: 860-486-5453
} fax: 860-486-4745
}
}
}
}
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--
Hendrik O. Colijn
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

==============================Original Headers==============================
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From: rok210-at-lehigh.edu
Date: Wed, 12 Oct 2011 16:23:01 -0500
Subject: [Microscopy] Re: FW: Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
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Hi Jim,
Take a look at
http://www2.snapfish.com/snapfish/thumbnailshare/AlbumID=3851367021/a=162307
140_162307140/otsc=SHR/otsi=SALBlink/COBRAND_NAME=snapfish/
These two meters are both on Varian Smart Gauges and I think they illustrate
where some of the confusion is coming from. One indicates where 1x10E-* is
located while the other indicates where the 10E-* range (or decade) is
located. Both meters cover the identical range and can only be read
correctly one way.

Ken

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: James Ehrman [mailto:jehrman-at-mta.ca]
Sent: Wednesday, October 12, 2011 3:19 PM
To: kenconverse-at-qualityimages.biz

Ken's images are the clearest possible indication about where the ranges
are:

On 10/12/2011 5:13 PM, kenconverse-at-qualityimages.biz wrote:
} http://www2.snapfish.com/snapfish/thumbnailshare/AlbumID=3851367021/a=162307
} 140_162307140/otsc=SHR/otsi=SALBlink/COBRAND_NAME=snapfish/

10% Nitrogen lines up with 1 microTorr (not sure what that's all about)
but on both gauges it corresponds to the same.

And 2E-6 mb is very nice for an evaporator ten minutes after pump-down
(without LN), perhaps it has a turbo-pump?

Interesting discussion all the same,
thanks
Rob Keyse
Lehigh EM facility.

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From: mmcheath-at-syr.edu
Date: Wed, 12 Oct 2011 17:21:49 -0500
Subject: [Microscopy] FW: vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jim,

I've been enjoying reading the flow of emails all day.

Could you tell us what your vacuum "chamber" is composed of material wise?
Are you dealing with a large glass bell jar and a Viton or Buna-N gasket?
Is the reading on your gauge typical of your ultimate pressure (without
Liq Nitrogen)?

The reason I ask is that if you do have a large glass bell jar with a
Viton gasket that has not been baked out in some time, then you should be
hitting a double wall in the pump down. Your hitting both the water
desorption issue from the inside surfaces of your "chamber" as well as the
bottoming out of the typical pressure you can normally get with a
non-baked system with a Viton vacuum seal without a LiqNitrogen cold
finger - something in the low e-6 torr range. If you are in fact in the
e-5 range then you probably have a small leak!

I'm firmly in the camp that your gauge reads 2e-6 torr!

Mike

********************************************************************
Michael M. Cheatham
321 Heroy Geology Laboratory Phone (315)-443-1261
Syracuse University Fax
(315)-443-3363
Syracuse, NY 13244-1070

email:mmcheath-at-syr.edu
http://earthsciences.syr.edu
http://www.facebook.com/EarthSciencesSU

owner of PLASMACHEM-L: http://listserv.syr.edu/archives/plasmachem-l.html
owner of XRF-L: http://listserv.syr.edu/archives/xrf-l.html
owner of TIMS-L: http://listserv.syr.edu/archives/tims-l.html

********************************************************************




On 10/12/11 9:18 AM, "jehrman-at-mta.ca" {jehrman-at-mta.ca} wrote:

} Microscopy-at-microscopy.com



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From: kleopullin-at-pacbell.net
Date: Wed, 12 Oct 2011 18:24:24 -0500
Subject: [Microscopy] FW: Vacuum gauge reading

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Justin,
Does this work?
http://tinyurl.com/vacuum-meter
Thanks for the suggestion
Ken

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: Justin Kraft [mailto:kraftpiano-at-gmail.com]
Sent: Wednesday, October 12, 2011 5:09 PM
To: kenconverse-at-qualityimages.biz

If this reads 10-5, the first set of coefficients on the right side of the gauge has no exponent associated with it, and the last exponent (10-9) has no coefficients.

If it reads 10-6, then each exponent has a set of coefficients and vice versa.

Kleo

--- On Wed, 10/12/11, Kleo Pullin {kleopullin-at-pacbell.net} wrote:

} From: Kleo Pullin {kleopullin-at-pacbell.net}
} Subject: Re: [Microscopy] RE: FW: Vacuum gauge reading
} To: KLeoPullin-at-pacbell.net, kenconverse-at-qualityimages.biz
} Date: Wednesday, October 12, 2011, 4:22 PM
} If this reads 10-5, the first set of
} coefficients on the right side of the gauge has no exponent
} associated with it, and the last exponent (10-9) has no
} coefficients.
}
} If it reads 10-6, then each exponent has a set of
} coefficients and vice versa.
}
} Kleo
}
} --- On Wed, 10/12/11, kenconverse-at-qualityimages.biz
} {kenconverse-at-qualityimages.biz}
} wrote:
}
} From: kenconverse-at-qualityimages.biz
} {kenconverse-at-qualityimages.biz}
} Subject: [Microscopy] RE:  FW: Vacuum gauge reading
} To: KLeoPullin-at-pacbell.net
} Date: Wednesday, October 12, 2011, 3:35 PM
}
}
}
}
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}
} Justin,
} Does this work?
} http://tinyurl.com/vacuum-meter
} Thanks for the suggestion
} Ken
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME  04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: Justin Kraft [mailto:kraftpiano-at-gmail.com]
}
} Sent: Wednesday, October 12, 2011 5:09 PM
} To: kenconverse-at-qualityimages.biz
} Subject: Re: [Microscopy] FW: Vacuum gauge reading
}
} Hey, Ken,
}
} Unfortunately, the list server truncated your URL.  You
} might want to try
} something like tinyurl.com.
}
} --Justin.
}
}
} On Oct 12, 2011, at 4:07 PM, kenconverse-at-qualityimages.biz
} wrote:
}
} }
} }
} }
} }
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} }
} } Hi Jim,
} } Take a look at
} }
} http://www2.snapfish.com/snapfish/thumbnailshare/AlbumID=3851367021/a=162307
} }
} 140_162307140/otsc=SHR/otsi=SALBlink/COBRAND_NAME=snapfish/
} } These two meters are both on Varian Smart Gauges and I
} think they
} illustrate
} } where some of the confusion is coming from.  One
} indicates where 1x10E-*
} is
} } located while the other indicates where the 10E-*
} range (or decade) is
} } located.  Both meters cover the identical range and
} can only be read
} } correctly one way.
} }
} } Ken
} }
} } QUALITY IMAGES
} } Servicing Scanning Electron Microscopes
} } Since 1981
} } 474 So. Bridgton Rd.
} } Bridgton, ME  04009
} } 207-647-4348
} } kenconverse-at-qualityimages.biz
} } qualityimages.biz
} }
} }
} } -----Original Message-----
} } X-from: James Ehrman [mailto:jehrman-at-mta.ca]
} } Sent: Wednesday, October 12, 2011 3:19 PM
} } To: kenconverse-at-qualityimages.biz
} } Subject: Re: [Microscopy] RE: FW: Vacuum gauge
} reading
} }
} } Hi Ken,
} }
} } As I wrote to Roger, I was explicitly trying *not* to
} bring gauge
} } calibration into this issue. My uncertainty here is
} just with what
} } freakin' value the gauge is telling me I have. One
} view points to
} } 2x10-6, the other to 2x10-5. I'm used to a measure of
} uncertainty most
} } things - order of magnitude uncertainty, no matter the
} circumstances, is
} } not really something I like to deal with. I think
} Denton dropped the
} } ball on labeling this gauge, no matter what the value
} is supposed to be.
} }
} } Jim
} }
} }
} } On 12/10/2011 4:12 PM, kenconverse-at-qualityimages.biz
} wrote:
} } }
} } }
} } }
} }
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} } }
} } } Roger just said everything I was going to say. 
} If Denton did this
} } } correctly, the gauge is reading 2x10E-6 (slightly
} higher pressure than
} } } 1x10E-6 to its left).  If they screwed up the
} calibration, shame on them.
} } } Being a cold cathode gauge it may be in need of
} both cleaning and
} } } calibrating.
} } }
} } } In my experience if the 1x10E-5 was to indicate
} the range (as on some
} } Varian
} } } gauges), then it would have been placed roughly
} over the 4 in the range
} } that
} } } was intended.  If it is placed on the end of a
} range, it indicates
} 1x10E-?
} } }
} } } My $.02
} } }
} } } Ken Converse
} } } owner
} } }
} } } QUALITY IMAGES
} } } Servicing Scanning Electron Microscopes
} } } Since 1981
} } } 474 So. Bridgton Rd.
} } } Bridgton, ME  04009
} } } 207-647-4348
} } } kenconverse-at-qualityimages.biz
} } } qualityimages.biz
} } }
} } }
} } } -----Original Message-----
} } } X-from: raristau-at-ims.uconn.edu
} [mailto:raristau-at-ims.uconn.edu]
} } } Sent: Wednesday, October 12, 2011 2:32 PM
} } } To: kenconverse-at-qualityimages.biz
} } } Subject: [Microscopy] FW: Vacuum gauge reading
} } }
} } }
} } }
} } }
} } }
} }
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} } }
} } } OK here comes Roger v1.3...
} } }
} } } I admit to being a little blindsided by Jim's
} original posting, but I
} hope
} } } no harm was done by my erring on the side of
} "didaction for dummies".
} } Excuse
} } } me if I did. My excuse: I am accustomed to
} educating graduate students.
} } }
} } } Jim, if your sense is that the time of pumping was
} insufficient to reach
} } } 10e-6 range, therefore the meter MUST be
} displaying 2 x 10e-5, perhaps
} } there
} } } is an issue of inaccurate, uncalibrated, or
} otherwise deficient gauges.
} } (Or
} } } a really fast pump.) Most thermocouple and
} ionizing gauges will become
} } } inaccurate through buildup of surface deposits on
} the gauge. Also they
} are
} } } calibrated for specific gases; a different gas
} composition will result in
} } an
} } } inaccurate gauge.
} } }
} } } All my money is still on 2 x 10e-6. HOWEVER, one
} caveat: If we get word
} } from
} } } the maker of the meter and they meant 10e-6 = 10 x
} 10e-6, then I withdraw
} } my
} } } wager. But I would still insist that is an
} improper way to label the
} } meter.
} } }
} } } Still cheerful
} } } Roger
} } }
} } }
} } } ------ Forwarded Message
} } } X-from: Roger Ristau {raristau-at-ims.uconn.edu}
} } } Date: Wed, 12 Oct 2011 13:48:48 -0400
} } } To: "Microscopy-at-Microscopy.Com" {microscopy-at-microscopy.com}
} } } Conversation: [Microscopy] Vacuum gauge reading
} } } Subject: FW: [Microscopy] Vacuum gauge reading
} } }
} } } A follow-up on my previous message: (I can't get
} enough "out-of-office"
} } } replies!)
} } }
} } } A tic marked 10e-6 means 1 x 10e-6.
} } } It makes no sense for it to represent 10 x 10e-6;
} that is an "improper
} } } fraction".
} } }
} } } Cheers all
} } } Roger
} } }
} } } ------ Forwarded Message
} } } X-from: {raristau-at-ims.uconn.edu}
} } } Reply-To: {raristau-at-ims.uconn.edu}
} } } Date: Wed, 12 Oct 2011 11:53:12 -0500
} } } To: {raristau-at-ims.uconn.edu}
} } } Subject: [Microscopy] Vacuum gauge reading
} } }
} } }
} } }
} } }
} } }
} }
} ----------------------------------------------------------------------------
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} Microscopy Society of
} America
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} ----------------------------------------------------------------------------
} } }
} } } This has been a fun thread to follow....
} } }
} } } With all humility and respect, it is plain that
} Jim is not the only one
} } } confused by these gauges. I have stared at a meter
} for many minutes many
} } } times as I tried to sort this out in my own head.
} } }
} } } Vacuum gauges, whether measuring current, voltage,
} resistance, etc. are
} } just
} } } like most other meters: The lower, or smaller, or
} least magnitude values
} } are
} } } on the left, the larger on the right. It is just
} that the pressure gauge
} } } starts with the needle pointing to the larger
} value on the right (closer
} } to
} } } atmospheric pressure), and moves to the smaller
} value end of the meter on
} } } the left as the pumps improve the vacuum. We are
} more accustomed to most
} } } other sorts of gauges in which the needle starts
} by pointing to the
} } smaller
} } } magnitude on the left and moves left to right as
} the gadget it is
} attached
} } } to does its stuff.
} } }
} } } Therefore, the vacuum meter reading, as the needle
} moves to the left of
} } the
} } } tic that is marked 10e-5 (= 1 x 10e-5), has
} reached the 10e-6 range. Note
} } } that the scale shows 8 (x 10e-6) to the right of 6
} (x 10e-6), that is,
} the
} } } larger magnitude to the right of the smaller
} magnitude. The meter in
} Jim's
} } } image is reading just a hair higher than 2 x
} 10e-6.
} } }
} } } Of course, not content to leave well enough alone,
} we create most of our
} } own
} } } confusion when we refer to "higher vacuum" as the
} state when the
} magnitude
} } } of pressure is "lower", and "lower vacuum" when
} the pressure reading is
} of
} } } "higher" magnitude. But that is another thread...
} } }
} } } With smiles
} } } Roger
} } }
} } } Roger A. Ristau, PhD
} } } Electron Microscopy Specialist
} } } Institute of Materials Science
} } } 97 North Eagleville Road
} } } University of Connecticut
} } } Storrs, CT 06269
} } } vox: 860-486-5453
} } } fax: 860-486-4745
} } }
} } }
} } }
} } }
} } } ==============================Original
} } Headers==============================
} } } 9, 21 -- From raristau-at-ims.uconn.edu
} Wed Oct 12 11:50:51 2011
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} } }
} } } ==============================Original
} } Headers==============================
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} Wed Oct 12 13:29:03 2011
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} reading
} } } 28, 22 -- From: Roger Ristau {raristau-at-ims.uconn.edu}
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} "MSA
} } Listserver" {microscopy-at-microscopy.com}
} } } 40, 28 -- Subject: RE: [Microscopy] FW: Vacuum
} gauge reading
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} }
} }
} } --
} }
} } James M. Ehrman
} } Digital Microscopy Facility
} } Mount Allison University
} } 63B York St.
} } Sackville, NB  E4L 1G7
} } CANADA
} }
} } phone: 506-364-2519
} } fax:   506-364-2505
} } email: jehrman-at-mta.ca
} } www:   http://www.mta.ca/dmf
} }
} } "It's 5:50 a.m., Do you know where your stack pointer
} is?"
} }
} }
} }
} } ==============================Original
} Headers==============================
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} } 16, 29 -- To: "'James Ehrman'" {jehrman-at-mta.ca} ,
} } 16, 29 --         "MSA Listserver" {microscopy-at-microscopy.com}
} } 16, 29 -- Subject: RE: [Microscopy] RE: FW: Vacuum
} gauge reading
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} 11, 29 -- Subject: RE: [Microscopy]  FW: Vacuum gauge
} reading
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6, 46 -- From: Kleo Pullin {kleopullin-at-pacbell.net}
6, 46 -- Subject: Re: [Microscopy] RE: FW: Vacuum gauge reading
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From: philippe.buffat-at-epfl.ch
Date: Wed, 12 Oct 2011 18:26:37 -0500
Subject: [Microscopy] STEM/EELS/Time resolved/special issue C. Colliex

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear colleagues,

The French Society of Microscopy is pleased to announce the special
issue in honor of Prof. Christian Colliex:

FOCUS ON RECENT ADVANCES IN (S)TEM AND RELATED SPECTROSCOPIES:
A TRIBUTE TO C. COLLIEX

European Physical Journal - Applied Physics,
vol. 54, issue 03, June 2011

http://www.epjap.org/action/displayIssue?decade=2010&jid=JAP&volumeId=54&issueId=03&iid=8296148



Thanks to the support of the French Society of Microscopy and the
Editions de Physique (EDP), all the papers in this issue are available
in OPEN ACCESS.

We take this opportunity to thank our authors who took care to write
their contribution for a broad audience and to invite you to submit your
own manuscript soon.

Philippe A. Buffat and Mathieu Kociak, Guest editors
Virginie Serin, President French Soc. Microscopies



Prof. Em. Philippe A. Buffat
Ecole Polytechnique Federale de Lausanne
AGH-UST University of Science and Technology Krakow
philippe.buffat-at-epfl.ch, http://cime.epfl.ch

Associated Editor EPJAP, the European Physical Journal: Applied Physics***
(http://www.edpsciences.org/epjap/)


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From: kleopullin-at-pacbell.net
Date: Wed, 12 Oct 2011 18:54:05 -0500
Subject: [Microscopy] Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Also, the gauge has shorter lines pointing to the coefficients and the right number of longer lines pointing to each of the exponents. It does seem that there is only one way to associate the exponents and their coefficients, with the longer tick marks pointing to the exponents, and accounting for their being a single set of coefficients associated with each exponent and each exponent associated with a set of coefficients.

I initially found it tricky learning to read vacuum gauges like this in EM53 (EM maintenance and repair) at Delta. I thoroughly enjoyed reading this thread from a "yeah! the professionals struggle, too," perspective

Thanks, Kleo

--- On Wed, 10/12/11, Kleo Pullin {kleopullin-at-pacbell.net} wrote:

} From: Kleo Pullin {kleopullin-at-pacbell.net}
} Subject: Re: [Microscopy] RE: FW: Vacuum gauge reading
} To: KLeoPullin-at-pacbell.net, kenconverse-at-qualityimages.biz
} Date: Wednesday, October 12, 2011, 4:22 PM
} If this reads 10-5, the first set of
} coefficients on the right side of the gauge has no exponent
} associated with it, and the last exponent (10-9) has no
} coefficients.
}
} If it reads 10-6, then each exponent has a set of
} coefficients and vice versa.
}
} Kleo
}
} --- On Wed, 10/12/11, kenconverse-at-qualityimages.biz
} {kenconverse-at-qualityimages.biz}
} wrote:
}
} From: kenconverse-at-qualityimages.biz
} {kenconverse-at-qualityimages.biz}
} Subject: [Microscopy] RE:  FW: Vacuum gauge reading
} To: KLeoPullin-at-pacbell.net
} Date: Wednesday, October 12, 2011, 3:35 PM
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy
} Society of America
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} ----------------------------------------------------------------------------
}
} Justin,
} Does this work?
} http://tinyurl.com/vacuum-meter
} Thanks for the suggestion
} Ken
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME  04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: Justin Kraft [mailto:kraftpiano-at-gmail.com]
}
} Sent: Wednesday, October 12, 2011 5:09 PM
} To: kenconverse-at-qualityimages.biz
} Subject: Re: [Microscopy] FW: Vacuum gauge reading
}
} Hey, Ken,
}
} Unfortunately, the list server truncated your URL.  You
} might want to try
} something like tinyurl.com.
}
} --Justin.
}
}
} On Oct 12, 2011, at 4:07 PM, kenconverse-at-qualityimages.biz
} wrote:
}
} }
} }
} }
} }
} ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor:  The
} Microscopy Society of America
} } To  Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} }
} ----------------------------------------------------------------------------
} }
} } Hi Jim,
} } Take a look at
} }
} http://www2.snapfish.com/snapfish/thumbnailshare/AlbumID=3851367021/a=162307
} }
} 140_162307140/otsc=SHR/otsi=SALBlink/COBRAND_NAME=snapfish/
} } These two meters are both on Varian Smart Gauges and I
} think they
} illustrate
} } where some of the confusion is coming from.  One
} indicates where 1x10E-*
} is
} } located while the other indicates where the 10E-*
} range (or decade) is
} } located.  Both meters cover the identical range and
} can only be read
} } correctly one way.
} }
} } Ken
} }
} } QUALITY IMAGES
} } Servicing Scanning Electron Microscopes
} } Since 1981
} } 474 So. Bridgton Rd.
} } Bridgton, ME  04009
} } 207-647-4348
} } kenconverse-at-qualityimages.biz
} } qualityimages.biz
} }
} }
} } -----Original Message-----
} } X-from: James Ehrman [mailto:jehrman-at-mta.ca]
} } Sent: Wednesday, October 12, 2011 3:19 PM
} } To: kenconverse-at-qualityimages.biz
} } Subject: Re: [Microscopy] RE: FW: Vacuum gauge
} reading
} }
} } Hi Ken,
} }
} } As I wrote to Roger, I was explicitly trying *not* to
} bring gauge
} } calibration into this issue. My uncertainty here is
} just with what
} } freakin' value the gauge is telling me I have. One
} view points to
} } 2x10-6, the other to 2x10-5. I'm used to a measure of
} uncertainty most
} } things - order of magnitude uncertainty, no matter the
} circumstances, is
} } not really something I like to deal with. I think
} Denton dropped the
} } ball on labeling this gauge, no matter what the value
} is supposed to be.
} }
} } Jim
} }
} }
} } On 12/10/2011 4:12 PM, kenconverse-at-qualityimages.biz
} wrote:
} } }
} } }
} } }
} }
} ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor:  The
} Microscopy Society of
} America
} } } To  Subscribe/Unsubscribe --
} } http://www.microscopy.com/MicroscopyListserver
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} } }
} }
} ----------------------------------------------------------------------------
} } }
} } } Roger just said everything I was going to say. 
} If Denton did this
} } } correctly, the gauge is reading 2x10E-6 (slightly
} higher pressure than
} } } 1x10E-6 to its left).  If they screwed up the
} calibration, shame on them.
} } } Being a cold cathode gauge it may be in need of
} both cleaning and
} } } calibrating.
} } }
} } } In my experience if the 1x10E-5 was to indicate
} the range (as on some
} } Varian
} } } gauges), then it would have been placed roughly
} over the 4 in the range
} } that
} } } was intended.  If it is placed on the end of a
} range, it indicates
} 1x10E-?
} } }
} } } My $.02
} } }
} } } Ken Converse
} } } owner
} } }
} } } QUALITY IMAGES
} } } Servicing Scanning Electron Microscopes
} } } Since 1981
} } } 474 So. Bridgton Rd.
} } } Bridgton, ME  04009
} } } 207-647-4348
} } } kenconverse-at-qualityimages.biz
} } } qualityimages.biz
} } }
} } }
} } } -----Original Message-----
} } } X-from: raristau-at-ims.uconn.edu
} [mailto:raristau-at-ims.uconn.edu]
} } } Sent: Wednesday, October 12, 2011 2:32 PM
} } } To: kenconverse-at-qualityimages.biz
} } } Subject: [Microscopy] FW: Vacuum gauge reading
} } }
} } }
} } }
} } }
} } }
} }
} ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor:  The
} Microscopy Society of
} America
} } } To  Subscribe/Unsubscribe --
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} } }
} }
} ----------------------------------------------------------------------------
} } }
} } } OK here comes Roger v1.3...
} } }
} } } I admit to being a little blindsided by Jim's
} original posting, but I
} hope
} } } no harm was done by my erring on the side of
} "didaction for dummies".
} } Excuse
} } } me if I did. My excuse: I am accustomed to
} educating graduate students.
} } }
} } } Jim, if your sense is that the time of pumping was
} insufficient to reach
} } } 10e-6 range, therefore the meter MUST be
} displaying 2 x 10e-5, perhaps
} } there
} } } is an issue of inaccurate, uncalibrated, or
} otherwise deficient gauges.
} } (Or
} } } a really fast pump.) Most thermocouple and
} ionizing gauges will become
} } } inaccurate through buildup of surface deposits on
} the gauge. Also they
} are
} } } calibrated for specific gases; a different gas
} composition will result in
} } an
} } } inaccurate gauge.
} } }
} } } All my money is still on 2 x 10e-6. HOWEVER, one
} caveat: If we get word
} } from
} } } the maker of the meter and they meant 10e-6 = 10 x
} 10e-6, then I withdraw
} } my
} } } wager. But I would still insist that is an
} improper way to label the
} } meter.
} } }
} } } Still cheerful
} } } Roger
} } }
} } }
} } } ------ Forwarded Message
} } } X-from: Roger Ristau {raristau-at-ims.uconn.edu}
} } } Date: Wed, 12 Oct 2011 13:48:48 -0400
} } } To: "Microscopy-at-Microscopy.Com" {microscopy-at-microscopy.com}
} } } Conversation: [Microscopy] Vacuum gauge reading
} } } Subject: FW: [Microscopy] Vacuum gauge reading
} } }
} } } A follow-up on my previous message: (I can't get
} enough "out-of-office"
} } } replies!)
} } }
} } } A tic marked 10e-6 means 1 x 10e-6.
} } } It makes no sense for it to represent 10 x 10e-6;
} that is an "improper
} } } fraction".
} } }
} } } Cheers all
} } } Roger
} } }
} } } ------ Forwarded Message
} } } X-from: {raristau-at-ims.uconn.edu}
} } } Reply-To: {raristau-at-ims.uconn.edu}
} } } Date: Wed, 12 Oct 2011 11:53:12 -0500
} } } To: {raristau-at-ims.uconn.edu}
} } } Subject: [Microscopy] Vacuum gauge reading
} } }
} } }
} } }
} } }
} } }
} }
} ----------------------------------------------------------------------------
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} Microscopy Society of
} America
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} } http://www.microscopy.com/MicroscopyListserver
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} } }
} }
} ----------------------------------------------------------------------------
} } }
} } } This has been a fun thread to follow....
} } }
} } } With all humility and respect, it is plain that
} Jim is not the only one
} } } confused by these gauges. I have stared at a meter
} for many minutes many
} } } times as I tried to sort this out in my own head.
} } }
} } } Vacuum gauges, whether measuring current, voltage,
} resistance, etc. are
} } just
} } } like most other meters: The lower, or smaller, or
} least magnitude values
} } are
} } } on the left, the larger on the right. It is just
} that the pressure gauge
} } } starts with the needle pointing to the larger
} value on the right (closer
} } to
} } } atmospheric pressure), and moves to the smaller
} value end of the meter on
} } } the left as the pumps improve the vacuum. We are
} more accustomed to most
} } } other sorts of gauges in which the needle starts
} by pointing to the
} } smaller
} } } magnitude on the left and moves left to right as
} the gadget it is
} attached
} } } to does its stuff.
} } }
} } } Therefore, the vacuum meter reading, as the needle
} moves to the left of
} } the
} } } tic that is marked 10e-5 (= 1 x 10e-5), has
} reached the 10e-6 range. Note
} } } that the scale shows 8 (x 10e-6) to the right of 6
} (x 10e-6), that is,
} the
} } } larger magnitude to the right of the smaller
} magnitude. The meter in
} Jim's
} } } image is reading just a hair higher than 2 x
} 10e-6.
} } }
} } } Of course, not content to leave well enough alone,
} we create most of our
} } own
} } } confusion when we refer to "higher vacuum" as the
} state when the
} magnitude
} } } of pressure is "lower", and "lower vacuum" when
} the pressure reading is
} of
} } } "higher" magnitude. But that is another thread...
} } }
} } } With smiles
} } } Roger
} } }
} } } Roger A. Ristau, PhD
} } } Electron Microscopy Specialist
} } } Institute of Materials Science
} } } 97 North Eagleville Road
} } } University of Connecticut
} } } Storrs, CT 06269
} } } vox: 860-486-5453
} } } fax: 860-486-4745
} } }
} } }
} } }
} } }
} } } ==============================Original
} } Headers==============================
} } } 9, 21 -- From raristau-at-ims.uconn.edu
} Wed Oct 12 11:50:51 2011
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} } } 9, 21 -- Date: Wed, 12 Oct 2011 12:50:50 -0400
} } } 9, 21 -- Subject: Vacuum gauge reading
} } } 9, 21 -- From: Roger Ristau {raristau-at-ims.uconn.edu}
} } } 9, 21 -- To: "Microscopy-at-Microscopy.Com" {microscopy-at-microscopy.com}
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} } }
} } } ==============================Original
} } Headers==============================
} } } 28, 22 -- From raristau-at-ims.uconn.edu
} Wed Oct 12 13:29:03 2011
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} } } 28, 22 -- Date: Wed, 12 Oct 2011 14:29:01 -0400
} } } 28, 22 -- Subject: FW: [Microscopy] Vacuum gauge
} reading
} } } 28, 22 -- From: Roger Ristau {raristau-at-ims.uconn.edu}
} } } 28, 22 -- To: "Microscopy-at-Microscopy.Com" {microscopy-at-microscopy.com}
} } } 28, 22 -- Message-ID: {CABB54AD.3222%raristau-at-ims.uconn.edu}
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} reading
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} } }
} } } ==============================Original
} } Headers==============================
} } } 40, 28 -- From kenconverse-at-qualityimages.biz
} Wed Oct 12 14:12:27 2011
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} } } 40, 28 -- To: {raristau-at-ims.uconn.edu} ,
} "MSA
} } Listserver" {microscopy-at-microscopy.com}
} } } 40, 28 -- Subject: RE: [Microscopy] FW: Vacuum
} gauge reading
} } } 40, 28 -- Date: Wed, 12 Oct 2011 15:12:20 -0400
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} }
} }
} } --
} }
} } James M. Ehrman
} } Digital Microscopy Facility
} } Mount Allison University
} } 63B York St.
} } Sackville, NB  E4L 1G7
} } CANADA
} }
} } phone: 506-364-2519
} } fax:   506-364-2505
} } email: jehrman-at-mta.ca
} } www:   http://www.mta.ca/dmf
} }
} } "It's 5:50 a.m., Do you know where your stack pointer
} is?"
} }
} }
} }
} } ==============================Original
} Headers==============================
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From: jfmjfm-at-umich.edu
Date: Wed, 12 Oct 2011 19:15:10 -0500
Subject: [Microscopy] Re: Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

OK, I have sat patiently through all of this discussion and now I feel I have to comment.
What on earth is the problem here?
It's a gauge, just read it!

___

John Mansfield PhD Cphys MInstP
4304 Spring Lake Boulevard
Ann Arbor MI 48108-9657
Phone (734) 994-3096
Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83 ° 45.7980')

Please note: Electronic Mail is not secure, but should be read several times every day, and should definitely be used for urgent or sensitive issues.




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From: vitalylazar-at-att.net
Date: Wed, 12 Oct 2011 23:06:02 -0500
Subject: [Microscopy] Re: vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
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It is 2 x 10-6 Torr.

More air to the right. Less air to the left.
But wait!
That was my right and my left. Not the instrument right and left.
I am right handed. No idea how the instrument is.
I assumed we both right handed which could be false.


First and most the scale graduated in Torr. Not in Torr x 10, not in
milliTorr. The "Torr" is the largest thing on the face of the meter. (I
love Denton Vacuum but it is not a unit of measure yet - here is an idea...)

Move needle to the right and pressure becomes 5x10-6, then 8x10-6, then
10x10-6 which equals 10-5. More air more pressure.

Move needle to the left and it becomes 1x10-6 which equals 10-6 or a
half of the displayed reading.
The 5x10-7 is further to the left and is half of 10-6. The 10-7 still
further to the left and is 1/10 of 10-6 or 1/20 of 2x10-6. Less air less
pressure.

Question though is purely educational because cold cathode gauges
accurate to the order of magnitude. Sure I can calibrate such gauge for
a bet. Reading will drift within months in a relatively stable
environment such as TEM. But dust and carbon inside the evaporator will
make reading dependent on temperature/vibration within days of practical
use. The safe statement should be "low 10-6 Torr range". Which is a
decent vacuum for most preparation methods.


Vitaly Feingold
SIA
2773 Heath Lane
Duluth GA 30096
Ph. 770-232-7785
Fax 770-232-1791
www.sia-cam.com
vitaly-at-sia-cam.com

On 10/12/2011 9:12 AM, jehrman-at-mta.ca wrote:
} ----------------------------------------------------------------------------
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} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Listers,
}
} This is a bit embarrassing, but I've been bothered by this long enough.
} Check out this picture of the vacuum gauge from my vacuum evaporator:
}
} http://www.mta.ca/dmf/download/jme/imgp0520a.jpg
}
} My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
} feeling for typical vacuum system performance tells me it's the former,
} but the labeling on the gauge is somewhat ambiguous. Does the large
} "10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
} I've used didn't leave this open to interpretation.
}
} Thanks in advance to those who respond and help dispel my uneasiness...
}
} Jim
}
}

==============================Original Headers==============================
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From: benada-at-biomed.cas.cz
Date: Thu, 13 Oct 2011 02:17:00 -0500
Subject: [Microscopy] Re: vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello all,
I read it as 2x10-6 torrs (approx.).

Here is an image of an old Balzers gauge:
{http://www2.biomed.cas.cz/~benada/V_meter_Balzers.jpg}
The Balzers gauge graphics shows it clearly (around 8x10-5 torrs, in this case).

Best regards from Prague.
Oldrich

On Wednesday 12 of October 2011 15:13:23 jehrman-at-mta.ca wrote:
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} http://www.microscopy.com/MicroscopyListserver/FAQ.html
} --------------------------------------------------------------------------
} --
}
} Hi Listers,
}
} This is a bit embarrassing, but I've been bothered by this long enough.
} Check out this picture of the vacuum gauge from my vacuum evaporator:
}
} http://www.mta.ca/dmf/download/jme/imgp0520a.jpg
}
} My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
} feeling for typical vacuum system performance tells me it's the former,
} but the labeling on the gauge is somewhat ambiguous. Does the large
} "10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
} I've used didn't leave this open to interpretation.
}
} Thanks in advance to those who respond and help dispel my uneasiness...
}
} Jim

==============================Original Headers==============================
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From: Philip.Koeck-at-ki.se
Date: Thu, 13 Oct 2011 02:41:45 -0500
Subject: [Microscopy] vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I would say the reading is between 1 x 10-6 and 1 x 10-5 so it has to be 2 x 10-6.
If 10-6 actually stands for 10 x 10-6 somebody at Denton should be tarred and feathered:)


Philip

-----Original Message-----
X-from: jehrman-at-mta.ca [mailto:jehrman-at-mta.ca]
Sent: 12 October 2011 15:20
To: Philip Köck

Hi Listers,

This is a bit embarrassing, but I've been bothered by this long enough.
Check out this picture of the vacuum gauge from my vacuum evaporator:

http://www.mta.ca/dmf/download/jme/imgp0520a.jpg

My question is: what reading is the gauge giving? ~2x10-5 or ~2x10-6? My
feeling for typical vacuum system performance tells me it's the former,
but the labeling on the gauge is somewhat ambiguous. Does the large
"10-5" on the meter indicate 10x10-5, or 1x10-5? Older Denton systems
I've used didn't leave this open to interpretation.

Thanks in advance to those who respond and help dispel my uneasiness...

Jim


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

You are what you eat.
So stay away from the jerk chicken.


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From: mdyousuf-at-qu.edu.qa
Date: Thu, 13 Oct 2011 05:09:21 -0500
Subject: [Microscopy] PSEM 3025 ASPEX - Need operation manual

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,
I inhereited a ASPEX PSEM 3025 from another department of our institution; where it was found abandoned; since the owner left the place for greener pastures. For around two years it has stayed in a corner of their lab. Everything looks fit and fine. I managed to power it on today!. The hitch is, that I do not have a operation manual or any kind of documentation. Could somebody having the same machine assist me in reviving this SEM. I would appreciate if a soft copy of its manual is mailed to me.
What could be the current cost of this machine?

Mohammed Yousuf Ph.D
Department of Mechanical Engineering
Materials characterization Lab
Texas A&M University at Qatar
Doha, State of Qatar


==============================Original Headers==============================
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From: nizets2-at-yahoo.com
Date: Thu, 13 Oct 2011 06:08:58 -0500
Subject: [Microscopy] Re: FW: Vacuum gauge reading

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I don't understand the problem neither.
 
10-6 {10-5
10-5 {2.10-5
 
So you can write it: 10-6 {10-5 {2.10-5
In this case how can 2x10-5 be situated between 10-5 and 10-6?
And if the answer was 2x10-5, how could 8x10-5 be nearer to 10-5 than 2x10-5??
It is a simple question of logic!
 
Regards,
Stephane

X-from: "colijn.1-at-osu.edu" {colijn.1-at-osu.edu}
To: nizets2-at-yahoo.com
Sent: Wednesday, October 12, 2011 11:03 PM

Hi all,

Like Ritchie, I am surprised at the multitude of responses and
rationales for reading the pressure.  The pressure reading is obvious
just by looking at the scale.  You don't need to think about which way
the gauge moves or how things pump down.  These are just red herrings!

The gauge is a PRESSURE gauge.  It has an obvious logarithmic scale with
higher pressures to the right.  The numbers between 10-6 and 10-5 are
the pressures between 1x10-6 and 1x10-5 (= 10x10-6).

The pressure is approx.  2x10-6 (or to coin a unit...  2 microtorr )

{/ on soapbox/}   There is no doubt (and should be a very short
discussion!) {/off soapbox/}

Cheers,
Henk


At 10/12/2011 4:38 PM, r.sims-at-auckland.ac.nz wrote:
}
}
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} I can hardly believe that this is even debateable!
}
} The gauge measures pressure (even though sub-atmospheric pressures are also called "vacuums").
}
} Higher pressures are to the RHS, thus a pressure of 10exp-3 is a higher pressure than one of 10exp-9.
}
} So, as the pressure decreases from 10exp-5, it goes: 1x10exp-5, 0.8x10exp-5 (ie 8x10exp-6), 0.6x10exp-5 (ie 6x10exp-6) etc etc.
}
} I can't see that it is indicating anything but a smidgen above (pressure!) 0.2x10exp-5, ie 2x10exp-6, but maybe I'm just not seeing the problem clearly.
}
} cheers
} Ritchie Sims
} University of Auckland
}
}
}
}
} ________________________________________
} X-from: kenconverse-at-qualityimages.biz [kenconverse-at-qualityimages.biz]
} Sent: 13 October 2011 08:13
} To: Ritchie Sims
} Subject: [Microscopy] RE: FW: Vacuum gauge reading
}
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}
} Roger just said everything I was going to say.  If Denton did this
} correctly, the gauge is reading 2x10E-6 (slightly higher pressure than
} 1x10E-6 to its left).  If they screwed up the calibration, shame on them.
} Being a cold cathode gauge it may be in need of both cleaning and
} calibrating.
}
} In my experience if the 1x10E-5 was to indicate the range (as on some Varian
} gauges), then it would have been placed roughly over the 4 in the range that
} was intended.  If it is placed on the end of a range, it indicates 1x10E-?
}
} My $.02
}
} Ken Converse
} owner
}
} QUALITY IMAGES
} Servicing Scanning Electron Microscopes
} Since 1981
} 474 So. Bridgton Rd.
} Bridgton, ME  04009
} 207-647-4348
} kenconverse-at-qualityimages.biz
} qualityimages.biz
}
}
} -----Original Message-----
} X-from: raristau-at-ims.uconn.edu [mailto:raristau-at-ims.uconn.edu]
} Sent: Wednesday, October 12, 2011 2:32 PM
} To: kenconverse-at-qualityimages.biz
} Subject: [Microscopy] FW: Vacuum gauge reading
}
}
}
}
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}
} OK here comes Roger v1.3...
}
} I admit to being a little blindsided by Jim's original posting, but I hope
} no harm was done by my erring on the side of "didaction for dummies". Excuse
} me if I did. My excuse: I am accustomed to educating graduate students.
}
} Jim, if your sense is that the time of pumping was insufficient to reach
} 10e-6 range, therefore the meter MUST be displaying 2 x 10e-5, perhaps there
} is an issue of inaccurate, uncalibrated, or otherwise deficient gauges. (Or
} a really fast pump.) Most thermocouple and ionizing gauges will become
} inaccurate through buildup of surface deposits on the gauge. Also they are
} calibrated for specific gases; a different gas composition will result in an
} inaccurate gauge.
}
} All my money is still on 2 x 10e-6. HOWEVER, one caveat: If we get word from
} the maker of the meter and they meant 10e-6 = 10 x 10e-6, then I withdraw my
} wager. But I would still insist that is an improper way to label the meter.
}
} Still cheerful
} Roger
}
}
} ------ Forwarded Message
} X-from: Roger Ristau {raristau-at-ims.uconn.edu}
} Date: Wed, 12 Oct 2011 13:48:48 -0400
} To: "Microscopy-at-Microscopy.Com" {microscopy-at-microscopy.com}
} Conversation: [Microscopy] Vacuum gauge reading
} Subject: FW: [Microscopy] Vacuum gauge reading
}
} A follow-up on my previous message: (I can't get enough "out-of-office"
} replies!)
}
} A tic marked 10e-6 means 1 x 10e-6.
} It makes no sense for it to represent 10 x 10e-6; that is an "improper
} fraction".
}
} Cheers all
} Roger
}
} ------ Forwarded Message
} X-from: {raristau-at-ims.uconn.edu}
} Reply-To: {raristau-at-ims.uconn.edu}
} Date: Wed, 12 Oct 2011 11:53:12 -0500
} To: {raristau-at-ims.uconn.edu}
} Subject: [Microscopy] Vacuum gauge reading
}
}
}
}
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} ----------------------------------------------------------------------------
}
} This has been a fun thread to follow....
}
} With all humility and respect, it is plain that Jim is not the only one
} confused by these gauges. I have stared at a meter for many minutes many
} times as I tried to sort this out in my own head.
}
} Vacuum gauges, whether measuring current, voltage, resistance, etc. are just
} like most other meters: The lower, or smaller, or least magnitude values are
} on the left, the larger on the right. It is just that the pressure gauge
} starts with the needle pointing to the larger value on the right (closer to
} atmospheric pressure), and moves to the smaller value end of the meter on
} the left as the pumps improve the vacuum. We are more accustomed to most
} other sorts of gauges in which the needle starts by pointing to the smaller
} magnitude on the left and moves left to right as the gadget it is attached
} to does its stuff.
}
} Therefore, the vacuum meter reading, as the needle moves to the left of the
} tic that is marked 10e-5 (= 1 x 10e-5), has reached the 10e-6 range. Note
} that the scale shows 8 (x 10e-6) to the right of 6 (x 10e-6), that is, the
} larger magnitude to the right of the smaller magnitude. The meter in Jim's
} image is reading just a hair higher than 2 x 10e-6.
}
} Of course, not content to leave well enough alone, we create most of our own
} confusion when we refer to "higher vacuum" as the state when the magnitude
} of pressure is "lower", and "lower vacuum" when the pressure reading is of
} "higher" magnitude. But that is another thread...
}
} With smiles
} Roger
}
} Roger A. Ristau, PhD
} Electron Microscopy Specialist
} Institute of Materials Science
} 97 North Eagleville Road
} University of Connecticut
} Storrs, CT 06269
} vox: 860-486-5453
} fax: 860-486-4745
}
}
}
}
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--
Hendrik O. Colijn                                         
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility      colijn.1-at-osu.edu
040 Fontana Labs                                      (614) 292-0674 (V)
116 W. 19th Ave.                                        (614) 292-7523 (F)
Columbus, OH  43210

"Time is that quality of nature which keeps things from happening all at
once.  Lately it doesn't seem to be working."

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 13 Oct 2011 10:20:22 -0500
Subject: [Microscopy] viaWWW:vacuum gauge reading

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Email: jman-at-u.northwestern.edu Name: Jason Mantei

Organization: Northwestern University

Title-Subject: [Filtered] vacuum gauge reading

Message: It has to be 2x10-6:

10^-6 is .000001. 10^-5 is .00001. The needle on the gauge is between these two values, so
2x10^-5, or .00002, doesn't make sense because it's outside of the range.

Just my two (times ten to the negative 6) cents!

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 13 Oct 2011 10:20:55 -0500
Subject: [Microscopy] viaWWW:Individual Molecolecule LOcalization MIcroscopy

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Email: alberto.diaspro-at-iit.it Name: Alberto Diaspro

Organization: Italian Institute of Technology

Title-Subject: [Filtered] Individual Molecolecule LOcalization MIcroscopy

Message: May be this paper can be useful and comments are welcome
http://www.nature.com/nmeth/journal/vaop/ncurrent/abs/nmeth.1744.html
ciao
Alby

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From: bozzola-at-siu.edu
Date: Thu, 13 Oct 2011 10:27:49 -0500
Subject: [Microscopy] Re: viaWWW:vacuum gauge reading

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Everyone,

My advice is to get a vacuum gauge with a digital readout!

John Bozzola
Reformed user of slide rules ....... anyone remember those?

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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From: jehrman-at-mta.ca
Date: Thu, 13 Oct 2011 11:09:36 -0500
Subject: [Microscopy] vacuum gauge reading - resolved (?)

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Denton's response:

James
The gauge is reading 2X10-6 I hope this helps

Thank You
George Mehaffey
Field Service Manager
Main # 856-439-9100
Desk # 856-380-5210
Cell # 609-304-9831

My inborn gauge reading skills are gloating, my intuition regarding vacuum systems is depressed. Now I must either have a stunningly high performance vacuum system, or a significantly miscalibrated gauge. Whoopee!

Next time I'll try to post a less contentious question. For example: my Denton CPD is the only commercial CPD I'm aware of that doesn't have a viewing window. Good or bad thing? :-)

As usual, thanks to all who took the time to post a reply. I apologize for any increases in blood pressure as a result.

Jim


--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
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From: vwang-at-schaferlabs.com
Date: Thu, 13 Oct 2011 11:21:11 -0500
Subject: [Microscopy] viaWWW:vacuum gauge reading

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Hi, all
I would read vacuum gauge from higher (right) to lower pressure (left). The
reason is 1) that there is no zero pressure (infinite lower, but no zero) on
the left end, but there is a finite on higher pressure (on right side), the
760 torr, and 2) the gauge starts showing pressure change from the higher
end when we start pumping, which tells us the way we should follow to read
its changes. Instrument does not start pumping down from lower pressure
(left side), this is also the reason we should not read it from left side.
As instrument pumps down, It shows 760 torr-1torr, 1E-1, then 0.1xE-1
(1xE-2), then 0.01xE-1 (1xE-3), 0.001xE-1 (1xE-4), 0.0001xE-1 (1xE-5),
0.00001xE-1 (1xE-6) and so on. Notice that I use the same unit for all
readings, the xE-1, but actual unit on gauge panel is different.

Let's make a simple case. If the needle is located between 760Torr and
1Torr, we know the instrument just starts pumping down and we would read it
by counting down from 760 (higher) to 1 torr (lower), no other way around.
For the same reason for reading, if the needle is located between 1xE-6 and
1xE-5, we will need to read it from higher to lower (right to left). As
long as needle stays above 1xE-6 (right side of xE-6 mark), it is on xE-5
territory and any reading should have a unit of xE-5, not xE-6. At any
given time we will read a needle position somewhere on the panel, and we
know instrument is still pumping down to keep the pressure down from that
number, so we need to read the number and report it with its unit by
counting down from the nearest highest pressure unit, from right to left in
this case, on the vacuum gauge.

Thanks,
Vincent
Schafer Vallecitos Laboratory
Sunol, CA

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Email: jman-at-u.northwestern.edu Name: Jason Mantei

Organization: Northwestern University

Title-Subject: [Filtered] vacuum gauge reading

Message: It has to be 2x10-6:

10^-6 is .000001. 10^-5 is .00001. The needle on the gauge is between
these two values, so 2x10^-5, or .00002, doesn't make sense because it's
outside of the range.

Just my two (times ten to the negative 6) cents!

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From: oshel1pe-at-cmich.edu
Date: Thu, 13 Oct 2011 11:27:19 -0500
Subject: [Microscopy] Re: vacuum gauge reading - resolved (?)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jim,

Bad thing. You don't get to show people the pretty purple argon glow
and then rant on how real neon signs are made, instead of these cheap
phosphor-coating-inside-the-tube imitations that are so common now.

(And with no window, you can't check for the horrid white or blue
glow of air not flushed out by the argon.)

Phil

} Next time I'll try to post a less contentious question. For example:
} my Denton CPD is the only commercial CPD I'm aware of that doesn't
} have a viewing window. Good or bad thing? :-)
}
} As usual, thanks to all who took the time to post a reply. I
} apologize for any increases in blood pressure as a result.
}
} Jim
} --
}
} James M. Ehrman
} Digital Microscopy Facility
} Mount Allison University
} 63B York St.
} Sackville, NB E4L 1G7
} CANADA
}
} phone: 506-364-2519
} fax: 506-364-2505
} email: jehrman-at-mta.ca
} www: http://www.mta.ca/dmf

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Thu, 13 Oct 2011 11:55:23 -0500
Subject: [Microscopy] vacuum gauge reading - resolved (?)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jim,

{chuckle}

Just checking ...

Phil
(And collecting new kinds of "out of office" autoreplies.)

} Phil,
}
} Stop messing with my mind! Argon glow from a critical point dryer? I
} thought I was adrift when a simple reading on a vacuum gauge caused
} such a stir.
}
} But your response also tells me how quickly a posting can run off
} into the weeds....
}
} Jim
}
}
} On 13/10/2011 1:28 PM, oshel1pe-at-cmich.edu wrote:
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Jim,
} }
} } Bad thing. You don't get to show people the pretty purple argon glow
} } and then rant on how real neon signs are made, instead of these cheap
} } phosphor-coating-inside-the-tube imitations that are so common now.
} }
} } (And with no window, you can't check for the horrid white or blue
} } glow of air not flushed out by the argon.)
} }
} } Phil
} }
} } } Next time I'll try to post a less contentious question. For example:
} } } my Denton CPD is the only commercial CPD I'm aware of that doesn't
} } } have a viewing window. Good or bad thing? :-)
} } }
} } } As usual, thanks to all who took the time to post a reply. I
} } } apologize for any increases in blood pressure as a result.
} } }
} } } Jim
} } } --
} } }
} } } James M. Ehrman
} } } Digital Microscopy Facility
} } } Mount Allison University
} } } 63B York St.
} } } Sackville, NB E4L 1G7
} } } CANADA
} } }
} } } phone: 506-364-2519
} } } fax: 506-364-2505
} } } email: jehrman-at-mta.ca
} } } www: http://www.mta.ca/dmf
}
}
} --
}
} James M. Ehrman
} Digital Microscopy Facility
} Mount Allison University
} 63B York St.
} Sackville, NB E4L 1G7
} CANADA
}
} phone: 506-364-2519
} fax: 506-364-2505
} email: jehrman-at-mta.ca
} www: http://www.mta.ca/dmf
}
} If you give some managers an inch they think they're a ruler.

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: callomon-at-ansp.org
Date: Thu, 13 Oct 2011 13:04:33 -0500
Subject: [Microscopy] Cambridge S200 SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Colleagues,

If anyone might be interested in acquiring our Cambridge S200 SEM and Orion imaging system, please contact me off-list at the address below.

Regards,

Paul Callomon
Collections Manager in Malacology, Invertebrate Paleontology and General Invertebrates
Academy of Natural Sciences
1900 Parkway, Philadelphia, PA 19103-1195, USA
callomon-at-ansp.org
Tel. 215-405-5096



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From: vray-at-partbeamsystech.com
Date: Thu, 13 Oct 2011 15:44:58 -0500
Subject: [Microscopy] Re: vacuum gauge reading - resolved (?)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Boo-hoooooo, I lost the money put on 2x10-5((

;=)))))

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 10/13/2011 12:10 PM, jehrman-at-mta.ca wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Denton's response:
}
} James
} The gauge is reading 2X10-6 I hope this helps
}
} Thank You
} George Mehaffey
} Field Service Manager
} Main # 856-439-9100
} Desk # 856-380-5210
} Cell # 609-304-9831
}
} My inborn gauge reading skills are gloating, my intuition regarding vacuum systems is depressed. Now I must either have a stunningly high performance vacuum system, or a significantly miscalibrated gauge. Whoopee!
}
} Next time I'll try to post a less contentious question. For example: my Denton CPD is the only commercial CPD I'm aware of that doesn't have a viewing window. Good or bad thing? :-)
}
} As usual, thanks to all who took the time to post a reply. I apologize for any increases in blood pressure as a result.
}
} Jim
}
}

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From: jkrupp-at-deltacollege.edu
Date: Thu, 13 Oct 2011 16:52:55 -0500
Subject: [Microscopy] Resin disposal

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

So, how do you all dispose of waste epoxy resin. We have been pouring it down the sink but they always get clogged and we have run out of drains that still work.

Not really. I'm good to go for higher concentrations of plastic, polymerize until solid then into the trash, but what about low conc. of plastic:solvent.

Like 1:3 plastic:acetone. That stuff never gets hard so I am looking for ideas about how to handle the waste.

Thanks

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: ZZhang-at-uwyo.edu
Date: Thu, 13 Oct 2011 18:28:42 -0500
Subject: [Microscopy] digital imaging standards

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone know if there is a "standard" for digital imaging, especially for microscopy related digital imaging?

If so, who is in charge of making such a standard?

Thank you,


Zhaojie Zhang, Ph. D.
Director, Jenkins Microscopy Facility
University of Wyoming
Laramie, WY 82071
PHONE: 307-766-3038
FAX: 307-766-5625







==============================Original Headers==============================
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11, 31 -- From: "Z.J. Zhang" {ZZhang-at-uwyo.edu}
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11, 31 -- "CONFOCALMICROSCOPY-at-LISTS.UMN.EDU" {CONFOCALMICROSCOPY-at-LISTS.UMN.EDU}
11, 31 -- Subject: digital imaging standards
11, 31 -- Thread-Topic: digital imaging standards
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From: mike.bode-at-resaltatech.com
Date: Thu, 13 Oct 2011 19:04:43 -0500
Subject: [Microscopy] digital imaging standards

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Zhaojie,

I don't think there is a standard as to what file format to use or what
image processing software to use, but there are ethical guidelines as to
what can be done and what should not be done, and how the image
manipulations should be documented. One such article you can find here:

http://swehsc.pharmacy.arizona.edu/exppath/micro/digimage_ethics.php

MSA also has a statement on ethical image processing.

http://www.microscopy.org/resources/digital_imaging.cfm

The gist of both is that you need to stay as true as possible to the
original image and pixel data (no compression), and that anything that could
lead to artifacts needs to be documented, and, of course, that whatever you
do to the image is documented in such a fashion that it can be repeated (as
all scientific data should).

Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-389-9839
f: +1-303-234-9270
Mike.Bode at ResAltaTech.com
www.ResAltaTech.com





-----Original Message-----
X-from: ZZhang-at-uwyo.edu [mailto:ZZhang-at-uwyo.edu]
Sent: Thursday, October 13, 2011 5:36 PM
To: mike.bode-at-resaltatech.com

Does anyone know if there is a "standard" for digital imaging, especially
for microscopy related digital imaging?

If so, who is in charge of making such a standard?

Thank you,


Zhaojie Zhang, Ph. D.
Director, Jenkins Microscopy Facility
University of Wyoming
Laramie, WY 82071
PHONE: 307-766-3038
FAX: 307-766-5625







==============================Original Headers==============================
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11, 31 -- Subject: digital imaging standards
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From: raristau-at-ims.uconn.edu
Date: Fri, 14 Oct 2011 08:45:07 -0500
Subject: [Microscopy] vacuum gauge reading - resolved (?)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I will be happy to collect the wagered money. I believe the bet was for the
usual virtual "two cents". ;-)

Roger

Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745


} From: {vray-at-partbeamsystech.com}
} Reply-To: {vray-at-partbeamsystech.com}
} Date: Thu, 13 Oct 2011 15:49:21 -0500
} To: {raristau-at-ims.uconn.edu}
} Subject: [Microscopy] Re: vacuum gauge reading - resolved (?)
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Boo-hoooooo, I lost the money put on 2x10-5((
}
} ;=)))))
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063 - leave a message with call-back number
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
} Web: www.freudlabs.com
}
} On 10/13/2011 12:10 PM, jehrman-at-mta.ca wrote:
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Denton's response:
} }
} } James
} } The gauge is reading 2X10-6 I hope this helps
} }
} } Thank You
} } George Mehaffey
} } Field Service Manager
} } Main # 856-439-9100
} } Desk # 856-380-5210
} } Cell # 609-304-9831
} }
} } My inborn gauge reading skills are gloating, my intuition regarding vacuum
} } systems is depressed. Now I must either have a stunningly high performance
} } vacuum system, or a significantly miscalibrated gauge. Whoopee!
} }
} } Next time I'll try to post a less contentious question. For example: my
} } Denton CPD is the only commercial CPD I'm aware of that doesn't have a
} } viewing window. Good or bad thing? :-)
} }
} } As usual, thanks to all who took the time to post a reply. I apologize for
} } any increases in blood pressure as a result.
} }
} } Jim
} }
} }
}
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6, 23 -- Subject: Re: [Microscopy] Re: vacuum gauge reading - resolved (?)
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From: vic555-at-gmail.com
Date: Fri, 14 Oct 2011 09:00:23 -0500
Subject: [Microscopy] GAXRD

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone know of any facility can perform Glancing Incidence XRD
with a Cr tube (my samples are Fe based)?

I will be thankful for any suggestions.
Vikram

==============================Original Headers==============================
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From: mcauliff-at-umdnj.edu
Date: Fri, 14 Oct 2011 12:27:03 -0500
Subject: [Microscopy] Re: digital imaging standards

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Do not use a "lossy" compression, ie. JPEG. Use TIFF to save your
images. Journals will publish guidelines in the "Instructions to
Authors" section as to what, if any, modifications may be allowed.
Always save the original, unaltered image file and a backup.

Geoff

On 10/13/2011 7:29 PM, ZZhang-at-uwyo.edu wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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}
} Does anyone know if there is a "standard" for digital imaging, especially for microscopy related digital imaging?
}
} If so, who is in charge of making such a standard?
}
} Thank you,
}
}
} Zhaojie Zhang, Ph. D.
} Director, Jenkins Microscopy Facility
} University of Wyoming
} Laramie, WY 82071
} PHONE: 307-766-3038
} FAX: 307-766-5625
}
}
}
}
}
}
}
} ==============================Original Headers==============================
} 11, 31 -- From ZZhang-at-uwyo.edu Thu Oct 13 18:28:42 2011
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} 11, 31 -- From: "Z.J. Zhang" {ZZhang-at-uwyo.edu}
} 11, 31 -- To: "'microscopy-at-microscopy.com'" {microscopy-at-microscopy.com} ,
} 11, 31 -- "CONFOCALMICROSCOPY-at-LISTS.UMN.EDU" {CONFOCALMICROSCOPY-at-LISTS.UMN.EDU}
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} 11, 31 -- Date: Thu, 13 Oct 2011 23:28:37 +0000
} 11, 31 -- Message-ID: {EF8DB51D155E974C8F9D33968898545D41AFBB-at-ponyexpress-m7.uwyo.edu}
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--
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**********************************************
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Neuroscience and Cell Biology
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voice: (732)-235-4583
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 14 Oct 2011 18:52:33 -0500
Subject: [Microscopy] viaWWW:Philips XL30 - Installation Manual

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Email: keith.daum-at-stryker.com Name: Keith Daum

Organization: Stryker Corporation

Title-Subject: [Filtered] Philips XL30 - Installation Manual

Message: I need a copy of the installation manual for a Philips XL30
SEM. It is a 1993 vintage SEM with a manual stage. Either a hard copy
or soft copy would be greatly appreciated.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 14 Oct 2011 18:53:11 -0500
Subject: [Microscopy] viaWWW:Diffraction pattern studies NiTi

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Email: aap-at-ust.hk Name: Aslan

Organization: Hong Kong University of Science and Technology

Title-Subject: [Filtered] Diffraction pattern studies

Message: I am working on NiTi (B2 phase) shape memory alloys. I think
all of the planes diffract and I do not know how to index my ring
pattern. Can any body help?



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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 14 Oct 2011 18:53:46 -0500
Subject: [Microscopy] viaWWW:Does HF effect contrast?

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Email: kcildavis02-at-gmail.com Name: Christie Davis

Title-Subject: [Filtered] Does HF effect contrast?

Message: Good morning. I am using HF (hydrofluoric acid) to etch away
spicules(silicon) from epon embedded sponge tissue. This MAY be
decreasing the contrast of the tissue when sectioned and viewed in the
TEM. Has anyone had this experience?
Thank you,

Christie

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 14 Oct 2011 18:55:12 -0500
Subject: [Microscopy] viaWWW:GERTRUDE FLEMING REMPFER 1912-2011

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Email: smithran-at-pdx.edu Name: RANDALL SMITH

Organization: PRESIDENT, PACIFIC NORTHWEST MICROSCOPY SOCIETY (PNMS)

Title-Subject: [Filtered] GERTRUDE FLEMING REMPFER 1912-2011

Message: October 14th, 2011, Friday,
Portland, Oregon

Dear Members and Friends,

Emertia Professor of Physics, Portland State University, Gertrude F.
Rempfer, passed away October 4th after a
brief infection. She was 99.

She was honored as an MSA FELLOW IN 2009, receiving the
honor at M&M2010 in Portland, Oregon, where there was a
standing ovation at the presidential openings that day. It was a well
deserved honor so someone active in microscopy for such a long period of
time. She is, indeed part of our history as microscopists.
Gert received BS and PhD degrees from the University of
Washington in 1934 and 1939 respectively. She held several
teaching posts, but during WWII she worked for the Naval
Research laboratory, Washington D.C. 1942-43, and at the
S.A.M. Laboratory, Columbia University (Manhattan Project) in 1944. She
and her husband, Robert Rempfer, came to
Portland State University in 1959, he in Mathematics, she in Physics.
She was an early member of the Pacific
Northwest Microscopy Society in instrumental in collegial
and cooperative work in instrument operation. She gave
full meaning to the operation of the local society for
collegial and cooperative benefit of all interested
electron microscopists. PNMS cherishes her participation
and active membership over these many years.

Gert received several honors and awards, the Vollum
Award for Distinguished Accomplishment in Science and
Technology, in 1987 the EMSA Distinguished Scientist award in physics
sciences in 1990, the Oregon Academy of Science,
Outstanding Scientist of the Year in 1998, and many others.

Gert was an outstanding teacher as well as researcher. She
gave freely of her technical expertise in electrostatic lens design and
photoelectron microscopy. She was instrumental in the development of a
microscope with
electrostatic lenses, the Elektros. Her research yielded
the world's first untra-high vacuum photoemission electron microscope in
1978. She developed two key elements of developing the achromat
electron lens by electron mirror
and beam separation system. She continued an active
research life beyond official retirement, continuing these
many projects with several graduate students.
Gert gave freely to everyone who entered her laboratory. We have lost
nothing in her passing. We have everything she was able to give to us -
they were her gifts to us
to use wisely, and we who knew her have every memory of
her excellent work. What we do not have is her mind
working with us on our future projects, and it was a
unique and cherished mind, indeed. A Remarkable Woman
In Science.

Randall W. Smith, President
Pacific Northwest Microscopy Society (PNMS)
and Dept of Physics
Portland State University
P.O. Box 751-PHY,
Portland, Oregon 97207

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 14 Oct 2011 18:56:05 -0500
Subject: [Microscopy] viaWWW:Digital imaging

Contents Retrieved from Microscopy Listserver Archives
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Email: rbrown-at-mvainc.com Name: Rich brown

Organization: MVA Scientific Consultants

Title-Subject: [Filtered] Digital imaging

Message: Answers to many questions can be found here
http://www.theiai.org/guidelines/swgit/
Most of the definitions and procedures concern legal requirements and
are applicable to good laboratory practices

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 15 Oct 2011 09:09:22 -0500
Subject: [Microscopy] viaWWW:TEM Screen Recoating

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Email: dcechet-at-ctarg.com.ar Name: Daniel

Title-Subject: [Filtered] TEM Screen Recoating

Message: Hi

We have an old Zeiss EM 10 and we have to recoat the screen viewing.
Does anyone know how to do this?

Thanks in advance

Daniel



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From: stefan.diller-at-t-online.de
Date: Sat, 15 Oct 2011 09:39:26 -0500
Subject: [Microscopy] Re: viaWWW:TEM Screen Recoating

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,
have a look at
http://www.laddresearch.com/General_Catalog/Chapter_3/Fluorescent_Screens/fluorescent_screens.html
...Just a satisfied customer....
I think their pricing is very reasonable. Just send an old screen over.

In my opinion you will spend too much money to make the screen on your own (with many trials and problems to solve; and I know
that because I did it myself ten years ago ;-) )


Best wishes,
Stefan


-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------




Am 15.10.11 16:13, schrieb microscopylistserver-noreply-at-microscopy.com:
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} Title-Subject: [Filtered] TEM Screen Recoating
}
} Message: Hi
}
} We have an old Zeiss EM 10 and we have to recoat the screen viewing.
} Does anyone know how to do this?
}
} Thanks in advance
}
} Daniel
}
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==============================Original Headers==============================
11, 22 -- From stefan.diller-at-t-online.de Sat Oct 15 09:39:25 2011
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From: colijn.1-at-osu.edu
Date: Sat, 15 Oct 2011 10:47:46 -0500
Subject: [Microscopy] Re: viaWWW:TEM Screen Recoating

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Daniel,

We've had good luck with Grant Scientific
(http://www.mindspring.com/~grantscientific, Dana Dunkelberger).

No financial interest, just a satisfied customer.

Cheers,
Henk


At 10/15/2011 10:10 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Email: dcechet-at-ctarg.com.ar Name: Daniel
}
} Title-Subject: [Filtered] TEM Screen Recoating
}
} Message: Hi
}
} We have an old Zeiss EM 10 and we have to recoat the screen viewing.
} Does anyone know how to do this?
}
} Thanks in advance
}
} Daniel
}
}
}
} Login Host: 190.226.190.127
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
} 12, 25 -- From microscopylistserver-noreply-at-microscopy.com Sat Oct 15 09:09:22 2011
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--
Hendrik O. Colijn
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

==============================Original Headers==============================
8, 27 -- From colijn.1-at-osu.edu Sat Oct 15 10:47:46 2011
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8, 27 -- Date: Sat, 15 Oct 2011 11:47:37 -0400
8, 27 -- From: "Hendrik O. Colijn" {colijn.1-at-osu.edu}
8, 27 -- Subject: Re: [Microscopy] viaWWW:TEM Screen Recoating
8, 27 -- In-reply-to: {201110151410.p9FEAXKA003838-at-ns.microscopy.com}
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From: John.Mardinly-at-asu.edu
Date: Mon, 17 Oct 2011 12:32:41 -0500
Subject: [Microscopy] digital imaging standards

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I'll second Henk's comment. We've always had good service from Dana. JEOL use him too, or at least they used to. No financial interest. Just a satisfied customer.

Sent from my iPad.
--
John Mansfield PhD Cphys MInstP
2010 Microscopy & Microanalysis Program Chair
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
Phone: (734) 936-3352 FAX (734) 763-2282
Cell. Phone: (734) 834-3913

4304 Spring Lake Boulevard
Ann Arbor MI 48108-9657
Phone (734) 994-3096
Location: N 42 ° 13' 28.8" (42 ° 13.4807') W 83 ° 45' 47.9" 42° 16' 48" (-83 ° 45.7980')

Please note: Electronic Mail is not secure, but should be read several times every day, and should definitely be used for urgent or sensitive issues.

On Oct 15, 2011, at 11:55 AM, colijn.1-at-osu.edu wrote:

}
}
}
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} ----------------------------------------------------------------------------
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} Hi Daniel,
}
} We've had good luck with Grant Scientific
} (http://www.mindspring.com/~grantscientific, Dana Dunkelberger).
}
} No financial interest, just a satisfied customer.
}
} Cheers,
} Henk
}
}
} At 10/15/2011 10:10 AM, microscopylistserver-noreply-at-microscopy.com wrote:
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} } replying please copy both dcechet-at-ctarg.com.ar as well as the
} } MIcroscopy Listserver
} } ---------------------------------------------------------------------------
} }
} } Email: dcechet-at-ctarg.com.ar Name: Daniel
} }
} } Title-Subject: [Filtered] TEM Screen Recoating
} }
} } Message: Hi
} }
} } We have an old Zeiss EM 10 and we have to recoat the screen viewing.
} } Does anyone know how to do this?
} }
} } Thanks in advance
} }
} } Daniel
} }
} }
} }
} } Login Host: 190.226.190.127
} } ---------------------------------------------------------------------------
} }
} }
} }
} } ==============================Original Headers==============================
} } 12, 25 -- From microscopylistserver-noreply-at-microscopy.com Sat Oct 15 09:09:22 2011
} } 12, 25 -- Received: from znl.com ([206.69.208.20])
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} } 12, 25 -- Content-Transfer-Encoding: 7bit
} } ==============================End of - Headers==============================
} }
}
} --
} Hendrik O. Colijn
} www.ceof.ohio-state.edu
} OSU Campus Electron Optics Facility colijn.1-at-osu.edu
} 040 Fontana Labs (614) 292-0674 (V)
} 116 W. 19th Ave. (614) 292-7523 (F)
} Columbus, OH 43210
}
} "Time is that quality of nature which keeps things from happening all at
} once. Lately it doesn't seem to be working."
}
} ==============================Original Headers==============================
} 8, 27 -- From colijn.1-at-osu.edu Sat Oct 15 10:47:46 2011
} 8, 27 -- Received: from ER6S1.ECR6.OHIO-STATE.EDU (er6s1.ecr6.ohio-state.edu [164.107.76.2])
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} 8, 27 -- id {01O78U6D7NVK93SC4O-at-ecr6.ohio-state.edu} for microscopy-at-microscopy.com;
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} 8, 27 -- 15 Oct 2011 11:47:44 -0400 (EDT)
} 8, 27 -- Date: Sat, 15 Oct 2011 11:47:37 -0400
} 8, 27 -- From: "Hendrik O. Colijn" {colijn.1-at-osu.edu}
} 8, 27 -- Subject: Re: [Microscopy] viaWWW:TEM Screen Recoating
} 8, 27 -- In-reply-to: {201110151410.p9FEAXKA003838-at-ns.microscopy.com}
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}


==============================Original Headers==============================
7, 21 -- From jfmjfm-at-umich.edu Sat Oct 15 13:24:08 2011
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From isabecaromell201102-at-yahoo.com.hk Mon Oct 17 04:50:36 2011
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Reply-To: {cmrs.isabella-at-yahoo.com.hk}

I beg to differ-JPEG is nearly indistinguishable from TIFF for photographic reproduction. That is one reason why all of the digital cameras in the world default to JPEG, even the expensive digital SLR's. The only place in a micrograph where you can actually discern compression artifacts is around micron markers or other text, and even that is only visible by zooming in on the region. BTW, as soon as you insert that image into PowerPoint for a report or presentation, it is automatically compressed anyway. However, I do agree that one should archive the raw original DM or whatever format the camera produces.

John Mardinly
ASU


}
}
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} Do not use a "lossy" compression, ie. JPEG. Use TIFF to save your
} images. Journals will publish guidelines in the "Instructions to
} Authors" section as to what, if any, modifications may be allowed.
} Always save the original, unaltered image file and a backup.
}
} Geoff
}
} On 10/13/2011 7:29 PM, ZZhang-at-uwyo.edu wrote:
} } ----------------------------------------------------------------------------
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} } Does anyone know if there is a "standard" for digital imaging, especially for microscopy related digital imaging?
} }
} } If so, who is in charge of making such a standard?
} }
} } Thank you,
} }
} }
} } Zhaojie Zhang, Ph. D.
} } Director, Jenkins Microscopy Facility
} } University of Wyoming
} } Laramie, WY 82071
} } PHONE: 307-766-3038
} } FAX: 307-766-5625
} }
} }
} }
} }
} }
} }
} }
} } ==============================Original Headers==============================
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} } 11, 31 -- "CONFOCALMICROSCOPY-at-LISTS.UMN.EDU" {CONFOCALMICROSCOPY-at-LISTS.UMN.EDU}
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} --
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} Geoff McAuliffe, Ph.D.
} Neuroscience and Cell Biology
} Robert Wood Johnson Medical School
} 675 Hoes Lane, Piscataway, NJ 08854
} voice: (732)-235-4583
} mcauliff-at-umdnj.edu
} **********************************************
}
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From: zaluzec-at-aaem.amc.anl.gov
Date: Mon, 17 Oct 2011 13:01:22 -0500
Subject: [Microscopy] digital imaging standards : JPEG vs Lossless

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

John

You are missing an important point.

By human eye you may not be able distinguish a JPEG from a TIFF.

However our images are scientific data, and we
end up doing quantitative analysis on this data.

JPEG formating CHANGES the data. What is even worse
if you take a JPEG image and store it a second time
CHANGES are made to the last set of CHANGES. This
corrupts the integrity of the scientific data.

Do a simple test. Take an image store it in TIFF.
Then store it as JPEG, then open the JPEG and compare
the results pixel by pixel. You no longer have the
same information. If you then store the JPEG again
the compression routine reformat the data yet again.

You should always, repeat always, store your original
data in a lossless format. RAW, TIFF are two of the
examples. You can just JPEG to post on the WWW
or print posters, but never when any quantitative
work is being done from that data set.

Nestor (steps down from his soap box)
Your Friendly Neighborhood SysOp






On 10/17/11 3:32 PM, John.Mardinly-at-asu.edu wrote:
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} I beg to differ-JPEG is nearly indistinguishable from TIFF for photographic reproduction. That is one reason why all of the digital cameras in the world default to JPEG, even the expensive digital SLR's. The only place in a micrograph where you can actually discern compression artifacts is around micron markers or other text, and even that is only visible by zooming in on the region. BTW, as soon as you insert that image into PowerPoint for a report or presentation, it is automatically compressed anyway. However, I do agree that one should archive the raw original DM or whatever format the camera produces.
}
} John Mardinly
} ASU
}
}
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} }
} } Do not use a "lossy" compression, ie. JPEG. Use TIFF to save your
} } images. Journals will publish guidelines in the "Instructions to
} } Authors" section as to what, if any, modifications may be allowed.
} } Always save the original, unaltered image file and a backup.
} }
} } Geoff
} }
} } On 10/13/2011 7:29 PM, ZZhang-at-uwyo.edu wrote:
} } } ----------------------------------------------------------------------------
} } } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} } }
} } } Does anyone know if there is a "standard" for digital imaging, especially for microscopy related digital imaging?
} } }
} } } If so, who is in charge of making such a standard?
} } }
} } } Thank you,
} } }
} } }
} } } Zhaojie Zhang, Ph. D.
} } } Director, Jenkins Microscopy Facility
} } } University of Wyoming
} } } Laramie, WY 82071
} } } PHONE: 307-766-3038
} } } FAX: 307-766-5625
} } }
} } }
} } }
} } }
} } }
} } }
} } }
} } } ==============================Original Headers==============================
} } } 11, 31 -- From ZZhang-at-uwyo.edu Thu Oct 13 18:28:42 2011
} } } 11, 31 -- Received: from willowsprings.uwyo.edu (willowsprings.uwyo.edu [129.72.10.31])
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} } } 11, 31 -- From: "Z.J. Zhang" {ZZhang-at-uwyo.edu}
} } } 11, 31 -- To: "'microscopy-at-microscopy.com'" {microscopy-at-microscopy.com} ,
} } } 11, 31 -- "CONFOCALMICROSCOPY-at-LISTS.UMN.EDU" {CONFOCALMICROSCOPY-at-LISTS.UMN.EDU}
} } } 11, 31 -- Subject: [Filtered] digital imaging standards
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} } }
} } }
} }
} }
} } --
} } --
} } **********************************************
} } Geoff McAuliffe, Ph.D.
} } Neuroscience and Cell Biology
} } Robert Wood Johnson Medical School
} } 675 Hoes Lane, Piscataway, NJ 08854
} } voice: (732)-235-4583
} } mcauliff-at-umdnj.edu
} } **********************************************
} }
} }
} }
} } ==============================Original Headers==============================
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--
===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
Materials Science/Bldg 212
Argonne, Illinois 60439 USA

Tel: 1-530-NES-TORZ (1-530-637-8679)
Fax: 1-630-252-4798

Email: Zaluzec-at-aaem.amc.anl.gov

iChat:Zaluzec-at-AIM
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Senior Scientist - Argonne National Laboratory
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E.P. Wigner Fellow - Oak Ridge National Laboratory
Senior Fellow of the Computational Institute - University of Chicago
President Microscopy Society of America

===========================================

The box said ...
"This program requires Win 95/98/NT/2K/XP/Vista or better..."
So I bought a Mac !

===========================================

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From: callomon-at-ansp.org
Date: Mon, 17 Oct 2011 13:47:29 -0500
Subject: [Microscopy] Jpeg vs tiff

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

There is another important distinction between jpegs and tiffs, apart from the loss of data incurred via jpeg compression. A tiff file retains the information for each color (Red, Green and Blue for RGB; Cyan, Magenta, Yellow and blacK for CMYK) in a separate channel, allowing colors to be balanced and adjusted relative to each other. A jpeg mixes them into a single channel (which is why it's one third or one quarter the size of a tiff), which means they can no longer be treated individually.
Nowadays a good jpeg will be accepted by many publishers, particularly for online publication, but for color-critical work most still insist on tiffs.

Paul Callomon
Collections Manager in Malacology, Invertebrate Paleontology and General Invertebrates
Academy of Natural Sciences
1900 Parkway, Philadelphia, PA 19103-1195, USA
callomon-at-ansp.org
Tel. 215-405-5096




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From: ZZhang-at-uwyo.edu
Date: Mon, 17 Oct 2011 13:51:43 -0500
Subject: [Microscopy] digital imaging standard - Summary and further questions

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thank you all for your response to my early post "digital imaging standard".

Although the question was very broad and vague, I received many responses that are very helpful! Many of the responses point to guidelines, rather than "standards", but they are important for the discussion.

Here is a long summary and I hope this can stimulate more discussion (and research?) to this exciting (and confusing) topic. Two more related questions are posted at the end.

------------------------------------------------
SUMMARY:
The standards for digital imaging (especially for microscopy imaging) could include, at least, the following aspects:

Acquisition/Capturing (including digitization of non-digital images?);
Storage;
Processing/manipulation/analysis/
Digital imaging ethics;
Image output


1. Acquisition/capturing

1a: the health of the microscope:

---------------
John Oreopoulos [john.oreopoulos-at-UTORONTO.CA]

There are several different standards for measuring spatial resolution: sub-diffraction sized fluorescent beads, mirrors, etc. Fluorescent beads can be purchased from many different companies, but there is no agreed upon standard size, dye spectra, or anything like that. Some people have used flow cytometry beads before, and I think the quality control is a bit tighter on those.

Molecular Probes also sells a fluorescent bead kit with beads that step up their fluorescent intensity in known amounts (no commercial interest):

http://probes.invitrogen.com/media/pis/mp07219.pdf

There are also standard resolution targets for brightfield and reflected imaging. Here's an example from Edmund Optics (no commercial interest):

http://www.edmundoptics.com/products/displayproduct.cfm?productid=1790

Pawley's confocal handbook says that you can coat these with a fluorescent dye if you want to use them for fluorescence.

Unfortunately, there is no intensity standard or "standard candle" for microscopy, although as you may have seen in some recent posts, some people suggest using the transmitted light source of the microscope and a power meter. I think uranyl glass has been talked about several times as well. If someone does have a good intensity standard, I'd really like to know about it as well.

-----------------
Rich Cole [rcole-at-WADSWORTH.ORG] and Anda Cornea [corneaan-at-OHSU.EDU]

ABRF (The Association of Biomolecular Resource Facilities) studies
http://www.abrf.org/index.cfm/group.show/LightMicroscopyResearchGroup.54.htm

Stack, R., Bayles, C., Girard, A., Martin, K., Opansky, C., Schulz, K., and Cole, R. (2011) Quality Assurance Testing for Modern Optical Imaging Systems. Microscopy & Microanalysis 17(4):598-606.

They use Chroma fluorescent plastic slides, sub-resolution beads, orange/orange spectral separation beads and reflection off gold coated slide. All good, none perfect.

For the health of my SP5 AOBS, I run a daily a 3 minute test that involves x-z-lambda, (occasionally x-z-lambda-t) scanning in reflection mode off a plain glass slide with all lasers on, same parameters of course. It gives a lot of information and it makes it relatively easy to detect problems and pinpoint their sources.

1b: Image acquisition/capturing

JOEL B. SHEFFIELD [jbs-at-TEMPLE.EDU]


There may not be formal standards, but I would certainly think that there are principles that should guide digital microscopy.

1. The pixel density should correspond, at a minimum, to the relevant detail in the original source.

2. The bit depth should include all levels of intensity in the original --i.e. not saturated, and not clipped.

3. For microscopy, images should include a magnification standard.

------------------------------
Nestor [zaluzec-at-aaem.amc.anl.gov {mailto:zaluzec-at-aaem.amc.anl.gov} ]

JPEG formating CHANGES the data. What is even worse if you take a JPEG image and store it a second time CHANGES are made to the last set of CHANGES. This corrupts the integrity of the scientific data.

Do a simple test. Take an image store it in TIFF.

Then store it as JPEG, then open the JPEG and compare the results pixel by pixel. You no longer have the same information. If you then store the JPEG again the compression routine reformat the data yet again.

You should always, repeat always, store your original data in a lossless format. RAW, TIFF are two of the examples. You can just JPEG to post on the WWW or print posters, but never when any quantitative work is being done from that data set.

2. Storage and image analysis
-------------------
Geoff McAuliffe [mcauliff-at-umdnj.edu]

Do not use a "lossy" compression, ie. JPEG. Use TIFF to save your images. Journals will publish guidelines in the "Instructions to

Authors" section as to what, if any, modifications may be allowed. Always save the original, unaltered image file and a backup.
-----------------------
Jennifer Hill [jjhill100-at-gmail.com]

In my experiences, most researchers use a tiff file format for publications and lossless compression jpegs for rough review. As far as a standard goes, there should be no manipulation in photoshop or similar programs that alters the original specimen from its original state. Adjusting brightness/contrast is usually ok; and depending on the purpose/ final output of the image the background can be cleaned of dust/noise. I'd be happy to answer any more of your questions in regards to imaging.

Ps. I agree with the other individual who posted; a scale of magnification should be included with the image.

--------------------
Jim Quinn [jquinn11733-at-gmail.com]

There are many ASTM standards for microscopy, some are digital, such as E1122 for JK inclusion rating by automated image analysis. E2765 for image capture and storage. The E4 subcommittee chair is John Friel. He can likely point you in the correct direction.

--------------------
Donnelly, Tom [TDonnelly-at-api.com]

As far as standards for mfg. there really is nothing out there. There is an industry group, OPIA, that meets one or two times per year to discuss "standards". Unfortunately each of the "Big Four" are all for standards for data files, operational communication, etc. as long as the standards conform to their individual formats.

The smaller companies which create software and third party hardware, as a group would support across the board standardization because every time Zeiss, Leica, Nikon, or Olympus change a hardware design or a software data input/output the third party vendors have to redesign their products.

This conflict will probably prevent true standards for a long time.

The best chance for data standards, at least, is the Open Microscopy Environment, project. http://www.openmicroscopy.org/site This project allows imaging facilities to utilize a single data format for analysis and storage.

-------------------------------
Dmitry Sokolov [dmitry.v.sokolov-at-GMAIL.COM]
MIAWiki, Wiki for Microscopy and Image Analysis, is a collaboration tool where primary information like papers, patents, etc. can be cited, analysed, published and shared for free. In many cases R&D is based on the best practices and protocols rather than standards.

Please discover capabilities of MIAWiki of real time accumulation and finding knowledge on your current demand.

http://confocal-manawatu.pbworks.com/w/page/16346911/FrontPage

-----------------------
Stan Schwartz [nikonbio-at-gmail.com]

The International Organization for Standardization covers this.
http://www.iso.org/iso/search.htm?qt=digital+image&sort=rel&type=simple&published=on

Along with many standards for Microscopy.
http://www.iso.org/iso/search.htm?qt=microscopy&sort=rel&type=simple&published=on


NOTE: The documents can be only access on a pay basis. There is not even a summary available.

3. Digital imaging ethics
-------------------------
John Oreopoulos [john.oreopoulos-at-UTORONTO.CA]

there is a fantastic article by Douglas Cromey that thoroughly discusses the topic:

Cromey, D., Avoiding Twisted Pixels: Ethical Guidelines for the Appropriate Use and Manipulation of Scientific Digital Images. Science and Engineering Ethics, 2010.

-------------------------
Mike Bode [mike.bode-at-resaltatech.com]


I don't think there is a standard as to what file format to use or what image processing software to use, but there are ethical guidelines as to what can be done and what should not be done, and how the image manipulations should be documented. One such article you can find here:

http://swehsc.pharmacy.arizona.edu/exppath/micro/digimage_ethics.php

MSA also has a statement on ethical image processing.

http://www.microscopy.org/resources/digital_imaging.cfm

The gist of both is that you need to stay as true as possible to the original image and pixel data (no compression), and that anything that could lead to artifacts needs to be documented, and, of course, that whatever you do to the image is documented in such a fashion that it can be repeated (as all scientific data should).

--------------------
4. Image output

Are we still reined by the mercy of the publishers? Often I see publishers require a resolution of 1200ppi, but no mention the image size. It ends up a "high resolution" image but the print size is 0.01 inches. Any thought on that?

Further questions:

1. Remember in the "old" days, that all films have a speed, ISO 100, 200 etc. Nowadays, do we just use the "gain" to control the speed and "grain size" on the digital camera? Is there a "standard"?

2. Quantitative analysis is becoming a norm of digital imaging. Does it always require 16bit images, rather 8bit? Did anyone compare the same sample using 8bit or 16bit, and see a significant difference?


Zhaojie

Zhaojie Zhang, Ph. D.
Director, Jenkins Microscopy Facility
University of Wyoming
Laramie, WY 82071
PHONE: 307-766-3038
FAX: 307-766-5625


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From: ph2-at-sprynet.com
Date: Mon, 17 Oct 2011 13:52:50 -0500
Subject: [Microscopy] digital imaging standards : JPEG vs Lossless

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Nestor:

I think it all depends on the intended future use.

I wouldn't go back and do fractal or fourier analysis on a JPEG image; but I
would use JPEGs for basic reports.

Also, for Forensic Investigation, TIFF or RAW format is certainly better and
implied as a first basis of collection in say -

ASTM E2765 - 11 Standard Practice for Use of Image Capture and Storage
Technology in Forensic Document Examination

I don't recall the exact discussions when the language in this standard was
developed (I did have some input) but purpose was a part of it. Some
considerations discussed in the standard are useful to review but the level
of scrutiny may vary and should probably be set as a policy basis. Perhaps
there should be a standard on "levels of data image quality" and then one
could state what the image value is in general and decide on its usefulness
for a particular task.

Here we vary our quality depending on the project. Routine stuff is JPEG
(mod-high relative quality) to Litigation (RAW & TIFF both stored with each
change documented).


Tony

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-----Original Message-----
X-from: zaluzec-at-aaem.amc.anl.gov [mailto:zaluzec-at-aaem.amc.anl.gov]
Sent: Monday, October 17, 2011 2:04 PM
To: ph2-at-sprynet.com

John

You are missing an important point.

By human eye you may not be able distinguish a JPEG from a TIFF.

However our images are scientific data, and we
end up doing quantitative analysis on this data.

JPEG formating CHANGES the data. What is even worse
if you take a JPEG image and store it a second time
CHANGES are made to the last set of CHANGES. This
corrupts the integrity of the scientific data.

Do a simple test. Take an image store it in TIFF.
Then store it as JPEG, then open the JPEG and compare
the results pixel by pixel. You no longer have the
same information. If you then store the JPEG again
the compression routine reformat the data yet again.

You should always, repeat always, store your original
data in a lossless format. RAW, TIFF are two of the
examples. You can just JPEG to post on the WWW
or print posters, but never when any quantitative
work is being done from that data set.

Nestor (steps down from his soap box)
Your Friendly Neighborhood SysOp






On 10/17/11 3:32 PM, John.Mardinly-at-asu.edu wrote:
}
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} I beg to differ-JPEG is nearly indistinguishable from TIFF for
photographic reproduction. That is one reason why all of the digital cameras
in the world default to JPEG, even the expensive digital SLR's. The only
place in a micrograph where you can actually discern compression artifacts
is around micron markers or other text, and even that is only visible by
zooming in on the region. BTW, as soon as you insert that image into
PowerPoint for a report or presentation, it is automatically compressed
anyway. However, I do agree that one should archive the raw original DM or
whatever format the camera produces.
}
} John Mardinly
} ASU
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} }
} } Do not use a "lossy" compression, ie. JPEG. Use TIFF to save your
} } images. Journals will publish guidelines in the "Instructions to
} } Authors" section as to what, if any, modifications may be allowed.
} } Always save the original, unaltered image file and a backup.
} }
} } Geoff
} }
} } On 10/13/2011 7:29 PM, ZZhang-at-uwyo.edu wrote:
} } }
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} } } Does anyone know if there is a "standard" for digital imaging,
especially for microscopy related digital imaging?
} } }
} } } If so, who is in charge of making such a standard?
} } }
} } } Thank you,
} } }
} } }
} } } Zhaojie Zhang, Ph. D.
} } } Director, Jenkins Microscopy Facility
} } } University of Wyoming
} } } Laramie, WY 82071
} } } PHONE: 307-766-3038
} } } FAX: 307-766-5625
} } }
} } }
} } }
} } }
} } }
} } }
} } }
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} } } 11, 31 -- From ZZhang-at-uwyo.edu Thu Oct 13 18:28:42 2011
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} } }
} }
} }
} } --
} } --
} } **********************************************
} } Geoff McAuliffe, Ph.D.
} } Neuroscience and Cell Biology
} } Robert Wood Johnson Medical School
} } 675 Hoes Lane, Piscataway, NJ 08854
} } voice: (732)-235-4583
} } mcauliff-at-umdnj.edu
} } **********************************************
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--
===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
Materials Science/Bldg 212
Argonne, Illinois 60439 USA

Tel: 1-530-NES-TORZ (1-530-637-8679)
Fax: 1-630-252-4798

Email: Zaluzec-at-aaem.amc.anl.gov

iChat:Zaluzec-at-AIM
Skype: Zaluzec
TPM: http://tpm.amc.anl.gov
WWW: http://www.amc.anl.gov

Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
E.P. Wigner Fellow - Oak Ridge National Laboratory
Senior Fellow of the Computational Institute - University of Chicago
President Microscopy Society of America

===========================================

The box said ...
"This program requires Win 95/98/NT/2K/XP/Vista or better..."
So I bought a Mac !

===========================================

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From: guenter.resch-at-imba.oeaw.ac.at
Date: Mon, 17 Oct 2011 14:33:41 -0500
Subject: [Microscopy] digital imaging standards

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear colleagues,

while I agree that JPEG is not a suitable format to store quantitative
data, there is one little issue about TIF files I'd like to raise:

TIFFs are actually very flexible containers for all kinds of image
data with differences in channels (RGB, CMYK, Alpha), pixel depth (4,
8, 16, 32, ... bit), layers etc ... and also compression. There are
TIFFs out there that have no compression, others with lossless
compression and even some with lossy compression, similar to JPEGs.

Hence, it is important to know how to save a TIF for later analysis ...
if in doubt, uncompressed or LZW.

Best,

Guenter

--
Dr. Guenter Resch, IMP-IMBA-GMI Electron Microscopy Facility
Email: guenter.resch-at-imba.oeaw.ac.at; Web: http://cores.imp.ac.at/em
Phone: +43 (1) 79044-4250; Fax/Voice Mail: +43 (1) 79044-224250
Post: Dr. Bohr-Gasse 3, 1030 Vienna, Austria, European Union

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From: mike.bode-at-resaltatech.com
Date: Mon, 17 Oct 2011 15:27:56 -0500
Subject: [Microscopy] digital imaging standards : JPEG vs Lossless

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Tony,

I I don't think that you and Nestor (or me) are in disagreement. As soon as
you print an image it doesn't' really matter if you use JPEG or TIFF. The
printing process will likely create more artifacts than a reasonable JPEG
compression. However, once you have acquired an image and stored it with a
lossy format it is no longer amenable to many image processing steps that
might be necessary to extract the information that is needed. And that may
include steps that you didn't think of when you saved the image initially.
Look at it this way: Would you store the quantitative results of any
experiment in a way that ensures that the data degrades? Of course not. An
image should be treated the same way. As soon as you acquire it, it should
be saved in way that does not degrade the data. Since any lossy compression
does lead to a deterioration, it should not be used. Of course, making a
copy and save it as a jpeg for printing is probably OK. I don't think that
anybody would scan such an image from a magazine and then assume that they
have recovered the original data.

There was a very intense discussion about this a couple of years back w/r to
21 cfr rule 11, where the FDA tried to implement a way to make sure that
data, including images, are available at a later stage to verify results. I
am sure this will come up again at some point. They also came to the
conclusion that the original data must be saved in a way that they can be
recovered. A lossy compression will not allow that.

And why take the risk? We now have TB sized hard disks that can store 10s of
thousands of images at very low prices.

Mike Bode, Ph.D.
ResAlta Research Technologies Corp.

2102 Beech Ct
Golden, CO 80401
USA

p: +1-303-748-4346
f: +1-303-202-6350
Mike.Bode-at-ResAltaTech.com
www.ResAltaTech.com





-----Original Message-----
X-from: ph2-at-sprynet.com [mailto:ph2-at-sprynet.com]
Sent: Monday, October 17, 2011 1:04 PM
To: mike.bode-at-resaltatech.com

Nestor:

I think it all depends on the intended future use.

I wouldn't go back and do fractal or fourier analysis on a JPEG image; but I
would use JPEGs for basic reports.

Also, for Forensic Investigation, TIFF or RAW format is certainly better and
implied as a first basis of collection in say -

ASTM E2765 - 11 Standard Practice for Use of Image Capture and Storage
Technology in Forensic Document Examination

I don't recall the exact discussions when the language in this standard was
developed (I did have some input) but purpose was a part of it. Some
considerations discussed in the standard are useful to review but the level
of scrutiny may vary and should probably be set as a policy basis. Perhaps
there should be a standard on "levels of data image quality" and then one
could state what the image value is in general and decide on its usefulness
for a particular task.

Here we vary our quality depending on the project. Routine stuff is JPEG
(mod-high relative quality) to Litigation (RAW & TIFF both stored with each
change documented).


Tony

......................................................................
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-----Original Message-----
X-from: zaluzec-at-aaem.amc.anl.gov [mailto:zaluzec-at-aaem.amc.anl.gov]
Sent: Monday, October 17, 2011 2:04 PM
To: ph2-at-sprynet.com

John

You are missing an important point.

By human eye you may not be able distinguish a JPEG from a TIFF.

However our images are scientific data, and we
end up doing quantitative analysis on this data.

JPEG formating CHANGES the data. What is even worse
if you take a JPEG image and store it a second time
CHANGES are made to the last set of CHANGES. This
corrupts the integrity of the scientific data.

Do a simple test. Take an image store it in TIFF.
Then store it as JPEG, then open the JPEG and compare
the results pixel by pixel. You no longer have the
same information. If you then store the JPEG again
the compression routine reformat the data yet again.

You should always, repeat always, store your original
data in a lossless format. RAW, TIFF are two of the
examples. You can just JPEG to post on the WWW
or print posters, but never when any quantitative
work is being done from that data set.

Nestor (steps down from his soap box)
Your Friendly Neighborhood SysOp






On 10/17/11 3:32 PM, John.Mardinly-at-asu.edu wrote:
}
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} I beg to differ-JPEG is nearly indistinguishable from TIFF for
photographic reproduction. That is one reason why all of the digital cameras
in the world default to JPEG, even the expensive digital SLR's. The only
place in a micrograph where you can actually discern compression artifacts
is around micron markers or other text, and even that is only visible by
zooming in on the region. BTW, as soon as you insert that image into
PowerPoint for a report or presentation, it is automatically compressed
anyway. However, I do agree that one should archive the raw original DM or
whatever format the camera produces.
}
} John Mardinly
} ASU
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} }
} } Do not use a "lossy" compression, ie. JPEG. Use TIFF to save your
} } images. Journals will publish guidelines in the "Instructions to
} } Authors" section as to what, if any, modifications may be allowed.
} } Always save the original, unaltered image file and a backup.
} }
} } Geoff
} }
} } On 10/13/2011 7:29 PM, ZZhang-at-uwyo.edu wrote:
} } }
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} } }
} } } Does anyone know if there is a "standard" for digital imaging,
especially for microscopy related digital imaging?
} } }
} } } If so, who is in charge of making such a standard?
} } }
} } } Thank you,
} } }
} } }
} } } Zhaojie Zhang, Ph. D.
} } } Director, Jenkins Microscopy Facility
} } } University of Wyoming
} } } Laramie, WY 82071
} } } PHONE: 307-766-3038
} } } FAX: 307-766-5625
} } }
} } }
} } }
} } }
} } }
} } }
} } }
} } } ==============================Original
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} } } 11, 31 -- From ZZhang-at-uwyo.edu Thu Oct 13 18:28:42 2011
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} } }
} }
} }
} } --
} } --
} } **********************************************
} } Geoff McAuliffe, Ph.D.
} } Neuroscience and Cell Biology
} } Robert Wood Johnson Medical School
} } 675 Hoes Lane, Piscataway, NJ 08854
} } voice: (732)-235-4583
} } mcauliff-at-umdnj.edu
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--
===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
Materials Science/Bldg 212
Argonne, Illinois 60439 USA

Tel: 1-530-NES-TORZ (1-530-637-8679)
Fax: 1-630-252-4798

Email: Zaluzec-at-aaem.amc.anl.gov

iChat:Zaluzec-at-AIM
Skype: Zaluzec
TPM: http://tpm.amc.anl.gov
WWW: http://www.amc.anl.gov

Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
E.P. Wigner Fellow - Oak Ridge National Laboratory
Senior Fellow of the Computational Institute - University of Chicago
President Microscopy Society of America

===========================================

The box said ...
"This program requires Win 95/98/NT/2K/XP/Vista or better..."
So I bought a Mac !

===========================================

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==============================Original Headers==============================
59, 33 -- From mike.bode-at-resaltatech.com Mon Oct 17 15:27:56 2011
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From: bozzola-at-siu.edu
Date: Mon, 17 Oct 2011 16:21:51 -0500
Subject: [Microscopy] EM: Director Position Officially Announced

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Here is the official announcement of the Director position at our university:

John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730

++++++++++++++++++++++++++++++++++++++++++++

POSITION ANNOUNCEMENT
DIRECTOR, INTEGRATED MICROSCOPY & GRAPHICS EXPERTISE (IMAGE) FACILITY
SIU CARBONDALE

POSITION TITLE:
Director, IMAGE (12 mo. term, A/P)

QUALIFICATIONS:
Professional electron microscopist with a minimum of 4 years
experience managing a centralized, service-oriented facility with
multidisciplinary clients. Ph.D. in one of the hard sciences that
includes a thorough understanding of theory and application of
scanning and transmission electron microscopy, as well as ancillary
techniques such as: energy dispersive X-ray microanalysis,
ultramicrotomy, scanning transmission electron microscopy, vacuum
coating procedures (sputtering, thermal evaporation) and specimen
preparation techniques for biological and non-biological specimens.
Experience must also include familiarity with light microscopy
(conventional and fluorescence), image analysis and atomic force
microscopy and grant writing. Preferred: Experience in problem
solving (trouble-shooting) with advanced instrumentation. A working
knowledge of graphics programs such as Photoshop, Illustrator,
InDesign, Acrobat, PowerPoint for use in professional publications and
large format posters. Able to work independently with minimal
administrative oversight or support. Excellent organizational and
communication skills (oral and written).

DUTIES:
Oversee all operational aspects of the central IMAGE facility. This
includes: (1) insuring performance of major instrumentation by
training of technologists in basic maintenance (filament replacement,
aperture cleaning, alignment) and clients in proper use of equipment,
(2) trouble-shooting problems with equipment and determining best
method to resolve issues, (3) developing long-range plan to replace
aging equipment by pursuing external funding, (4) overseeing
accounting (billing) and inventory control, (5) serving on student
advisory committees and teaching courses in electron microscopy, (6)
advising faculty with research projects involving electron microscopy,
(7) training clients in proper methods to prepare posters for
professional meetings, (8) overseeing printing of large-format posters
and routine maintenance of poster printer, (9) providing tours of the
facility to local colleges, schools and potential clients.

WEBSITE: www.orda.siu.edu/hr/image.html
Additional information on the facility may be
seen on our website.

APPLICATION DEADLINE: November 14, 2011, or until filled

TO APPLY: Send letter of application, current resume, names,
addresses, and contact information for three references electronically
via the website or hard copy to:

Chair, Search Committee
Office of Sponsored Projects Administration
SIU Carbondale
900 S Normal, Woody Hall C206, MC 4709
Carbondale, IL 62901

SIU Carbondale is an affirmative action/equal opportunity employer
that strives to enhance its ability to develop a diverse faculty and
staff and to increase its potential to serve a diverse student
population. All applications are welcomed and encouraged and will
receive consideration.


==============================Original Headers==============================
11, 18 -- From bozzola-at-siu.edu Mon Oct 17 16:21:50 2011
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From: allan.mitchell-at-stonebow.otago.ac.nz
Date: Tue, 18 Oct 2011 16:00:08 -0500
Subject: [Microscopy] Re: Cilia Biopsies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi All

I am reviewing the biopsy protocols used in our lab. One inconsistency I have come across is with regard to our cilia biopsies. I note that in our manual the cilia biopsies are supposed to be spit into two portions (at the hospital), one portion to be fixed in 1% tannic acid in 2% glutaraldehyde in 0.1M cacodylate buffer (freshly made up) and the other portion to be fixed in 2% glutaraldehyde in 0.1M cacodylate buffer (without tannic acid). After fixing for 1.5 hours the samples are then given 3 x buffer washes before being placed in the fridge for collection and further processing. I have noticed that recently this has not always been happening. Some nasal samples have simply been fixed in 2% glutaraldehyde in 0.1M cacodylate buffer before further processing. I have had no feedback from the pathologists about whether this is an issue or not. I have a couple of questions;

1. Do people doing TEM nasal biopsies still use tannic acid with the primary fixation ?

2. Is it still considered necessary?

3. If so, what protocol do you recommend?

Thanks for your time

Have a great day

Allan




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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 19 Oct 2011 10:32:43 -0500
Subject: [Microscopy] viaWWW:EM Sample Preparation Charging

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
---------------------------------------------------------------------------
Remember this posting is most likely not from a Subscriber, so when replying please copy both
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Email: jjm36-at-psu.edu Name: Joshua Maier

Organization: Penn State University

Title-Subject: [Filtered] EM Sample Preparation Charging

Message: Hello,

I work for Penn State University and oversee the Materials TEM Sample Preparation lab. Within the
next month, the lab will be moved to a new building and combined with a general EM preparation lab.
I was wondering how other institutes charge for preparing materials samples for TEM and SEM?
Currently, we charge for ion mill time, my staff time and consumables. Our finances are being
reviewed before this move and some adjustments need to be made. Please let me know what is working well.

Thanks,
-Josh Maier

Login Host: 146.186.179.10
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From: rbeavers-at-mail.smu.edu
Date: Thu, 20 Oct 2011 11:05:15 -0500
Subject: [Microscopy] Locating Academic Labs who run Leo 906E TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Group,

After much effort we have been able to get our used Leo 906E TEM placed into its new home and have everything up and running.

As new users of TEM we are slowly working toward making the lab a working facility resource. I though it may be useful to identify and possibly make contact with other academic users of this specific TEM to exchange information that could help us.

If you own and run a Leo 906E, I and my novice operator would like to hear from you.

Thanks

Roy Beavers

Southern Methodist University
Department of Earth Sciences
P.O. Box 750395
Dallas, TX 75275
Voice: 214-768-2756
Fax: 214-768-2701
Email: rbeavers-at-smu.edu



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From: jkrupp-at-deltacollege.edu
Date: Thu, 20 Oct 2011 11:43:57 -0500
Subject: [Microscopy] Calling Delta grads

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

If you are not a Delta College grad, or know the location of a Delta College EM grad, this message is not for you. Hit delete.

I just put up a map of the US in the hallway and would like to mark it with the locations of Delta College grads. Voodoo doll style.

I am doing this to keep track for our records as well as encourage students currently in the program that there is hope after Delta.

I know I have asked for this info before, but I am not the best bookkeeper so I am trying again.

Drop me a reply if you can help.

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





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From: jkrupp-at-deltacollege.edu
Date: Thu, 20 Oct 2011 12:30:06 -0500
Subject: [Microscopy] Resin disposal replies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi again:


This is a summary of the replies I got to my question about resin disposal.

First, let me apologize for not clearly stating that we do not really dispose of resin down the sink. Never did, never will. It was a bad joke.

There were two main suggestions for resin disposal. Leave it in the hood to let the solvent evaporate, then into the oven for polymerization and out in the trash, or mix all the infiltration steps to increase the concentration of plastic so it will polymerize and then out, or both.

There were some other specific recommendations that were insightful to me. One was to OD the plastic with catalyst to speedup polymerization of reluctant mixtures. There’s always too much catalyst in those kits anyway and it would be good to move it along.

Another suggestion was to use the empty bottles that the resin components come in as waste bottles for mixtures to be discarded.

As always, there are red herrings that show up in situations like this. At a previous institution we were advised against letting solvents evaporate in the hood as a means of disposal. Among the reasons were local air quality regulations that had to account for how much solvent we were adding to the atmosphere and EH&S wanted that minimized.

It can also be problematic in determining the proper category of ‘waste’ for resin. At the same former institution, we had strict rules about calling anything a ‘waste’. Once a container is labeled as ‘waste’ we had to move it along within 6 months, no keeping ‘waste’ containers in the hood and no letting it build up over time. On the other hand, if it is not labeled as ‘waste’ it could stay around for a long time. So if liquid resin is toxic and considered a waste and polymerized resin is not toxic and may be tossed in the regular trash, seems to be a little Catch-22 going on.

Several replies suggested working with our hazardous waste office. That’s a great idea, except that the hazardous waste guys here think Osmium is some kind of male skin treatment (go ahead, http://www.osmiumformen.com/).

The best reply was from a lab that keeps a 5 gal can of acetone next to the sink to wash the resin down the pipes. Only problem they reported was the need to replace the plastic pipes fairly often.

All in all, there were great replies that helped me a lot.

I haven’t had such a good time since I tried to read the vacuum gauge on my VE.

Now I need to figure out what to do with the GD UA.

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





==============================Original Headers==============================
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From: frank_karl-at-ardl.com
Date: Thu, 20 Oct 2011 13:38:34 -0500
Subject: [Microscopy] Resin disposal replies

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



-----Original Message-----
X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
Sent: Thursday, October 20, 2011 1:38 PM
To: Frank Karl

Hi again:


This is a summary of the replies I got to my question about resin disposal.

First, let me apologize for not clearly stating that we do not really dispose of resin down the sink. Never did, never will. It was a bad joke.

There were two main suggestions for resin disposal. Leave it in the hood to let the solvent evaporate, then into the oven for polymerization and out in the trash, or mix all the infiltration steps to increase the concentration of plastic so it will polymerize and then out, or both.

There were some other specific recommendations that were insightful to me. One was to OD the plastic with catalyst to speedup polymerization of reluctant mixtures. There’s always too much catalyst in those kits anyway and it would be good to move it along.

Another suggestion was to use the empty bottles that the resin components come in as waste bottles for mixtures to be discarded.

As always, there are red herrings that show up in situations like this. At a previous institution we were advised against letting solvents evaporate in the hood as a means of disposal. Among the reasons were local air quality regulations that had to account for how much solvent we were adding to the atmosphere and EH&S wanted that minimized.

It can also be problematic in determining the proper category of ‘waste’ for resin. At the same former institution, we had strict rules about calling anything a ‘waste’. Once a container is labeled as ‘waste’ we had to move it along within 6 months, no keeping ‘waste’ containers in the hood and no letting it build up over time. On the other hand, if it is not labeled as ‘waste’ it could stay around for a long time. So if liquid resin is toxic and considered a waste and polymerized resin is not toxic and may be tossed in the regular trash, seems to be a little Catch-22 going on.

Several replies suggested working with our hazardous waste office. That’s a great idea, except that the hazardous waste guys here think Osmium is some kind of male skin treatment (go ahead, http://www.osmiumformen.com/).

The best reply was from a lab that keeps a 5 gal can of acetone next to the sink to wash the resin down the pipes. Only problem they reported was the need to replace the plastic pipes fairly often.

All in all, there were great replies that helped me a lot.

I haven’t had such a good time since I tried to read the vacuum gauge on my VE.

Now I need to figure out what to do with the GD UA.

Jon

Jonathan Krupp
Delta College
5151Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu





==============================Original Headers==============================
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From: Williams-at-GENECTR.HUNTER.CUNY.EDU
Date: Thu, 20 Oct 2011 13:56:56 -0500
Subject: [Microscopy] Opening To Teach TEM Course at Hunter College

Contents Retrieved from Microscopy Listserver Archives
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Dear List
Hunter College is looking for an individual to teach a one semester
electron microscopy course in the Spring of 2012. This school is
located on the upper east side of New York City, at 68th street and
Lexington. The class would meet twice a week for lectures and
lab. The class meeting are currently scheduled for Tuesday and Wednesday afternoon.
It would be at the introductory level covering the basic
theoretical background of TEM, sample preparation and imaging. The
position would be at the level of an adjunct faculty
appointment. Interested candidates should email their resume to
microscopy-at-genectr.hunter.cuny.edu

Thank you

Dr. Lloyd Williams
Dept. of Biology
Hunter College
695 Park Ave
New York NY 10065


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 20 Oct 2011 23:17:04 -0500
Subject: [Microscopy] viaWWW:Fixing a Malvern zetasier

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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://microscopy.com/MLFormMail.html
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Email: lamiller-at-illinois.edu Name: Lou Ann Miller

Organization: University of Illinois

Title-Subject: [Filtered] Fixing a Malvern zetasier

Message: Greetings,

While not directly related to microscopes, our facility has a zetasizer.


I was wondering if any of your facilities do too, and if you do have a
Malvern zetasizer, do you know of anyone besides Malvern that fixes them?


Thanks!

Lou Ann
( I'm on the list, so if you reply to the list I will see it)
Login Host: 130.126.102.8
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From: jafarhan-at-rci.rutgers.edu
Date: Fri, 21 Oct 2011 09:56:38 -0500
Subject: [Microscopy] SEM educational samples

Contents Retrieved from Microscopy Listserver Archives
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Dear listers,

I am looking to purchase educational SEM samples for imaging, EDS, BS, and
EBSD. I wonder if there is any single source. Any advice is appreciated.

Thanks,

Jafar


==============================Original Headers==============================
5, 32 -- From jafarhan-at-rci.rutgers.edu Fri Oct 21 09:56:37 2011
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From: kraftpiano-at-gmail.com
Date: Fri, 21 Oct 2011 10:35:07 -0500
Subject: [Microscopy] Re: SEM educational samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

What level of students are you working with? I have a long list of things that make good samples for education that you don't have to order- they can be readily found around your house or school.

For example, when I taught high school, I had a couple of students work on a project with the SEM that involved comparing the crystal morphology between real sugar and several brands of artificial sweetener. They also compared other properties like solubility, melting point, etc.

The main issue you will find is that many specimens need certain types of preparation. If you don't have access to a CPD or other dehydration system, you might find it difficult to image something like seaweed or other wet materials.

It also depends on the capabilities of your scope- if you have EDS, than something simple like a rock or a piece of welded steel might make a good sample- examining the chemical differences between materials that look very similar. BS and EDS make excellent pictures using some types of rocks. (I have a beautiful copper ore sample I'd be happy to send you a hunk of- just send me your address. It looks great under BS, and even better under EDS.)

Another really good specimen is an old wind-up watch. Take the mechanism out and wind it up, then use the SEM to show the movement of the hour hand.

--Justin A. Kraft
Applications Engineer
IXRF Systems

On Oct 21, 2011, at 10:01 AM, jafarhan-at-rci.rutgers.edu wrote:

}
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} EBSD. I wonder if there is any single source. Any advice is appreciated.
}
} Thanks,
}
} Jafar
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From: bozzola-at-siu.edu
Date: Fri, 21 Oct 2011 14:18:58 -0500
Subject: [Microscopy] EM: Immune Labeling of Neurological Tissues

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A colleague is interested in localizing 5-HT-1B antigen in synapses of
CNS tissues. He wants to use a pre-embedding labeling method.
However, I suggested he consider using post-embedding staining, as
follows. 1. Perfusion fixation of CNS specimen
(formaldehyde/glutaraldehyde), 2. Quenching of residual fixative using
lysine, 3. Embedding in LR White, 4. Reaction of sections with primary
antibody followed by gold-labeled secondary antibody.

Questions: 1. Is there a reason for using pre-embedding labeling with
this system? 2. Any recommended fixatives for optimum preservation of
the 5-HT-1B antigen? 3. Any recommended protocols?

Thank you.

--
John J. Bozzola, Ph.D., Professor & Director of IMAGE
Integrated Microscopy & Graphics Expertise
Southern Illinois University
750 Communications Drive
Carbondale, IL  62901
Phone: 618-453-3730


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5, 18 -- Subject: EM: Immune Labeling of Neurological Tissues
5, 18 -- From: John Bozzola {bozzola-at-siu.edu}
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From: hyi-at-emory.edu
Date: Mon, 24 Oct 2011 10:10:09 -0500
Subject: [Microscopy] Re: EM: Immune Labeling of Neurological Tissues

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, John:

5-HT-1B is a serotonin (5-hydroxytrptamine) receptor subtype. In rat
CNS, 5-HT-1B has been reported to be intensely present in the substantia
nigra and globus pallidus of brain. At the ultrastructure level, 5-HT-1B
has been shown to be associated with the plasma membrane of preterminal
axons.

Immunolabeling in brain tissue is commonly done on 40-50 µm vibrating
microtome sections using the pre-embedding immunoperoxidase or immunogold
(with ultrasmall gold conjugates) methods. These methods allow
researchers to evaluate the distribution of the labeling over the large
and anatomically heterogeneous brain regions at LM level. The structure
of interest can then be identified on flat embedded vibrating microtome
sections and re-embedded/thin sectioned for EM analysis.


Another advantage that the pre-embedding method offers is its relatively
good preservation and contrast of membrane structure. For localization
analysis at the ultrastructual level, the membrane integrity of brain
tissue is particularly critical. This is because 1. The membrane is
needed for the identification of different neuronal profiles, and 2. The
localization interests are often membrane proteins (receptors,
transporters, channel proteinss). In my experience, the structural
preservation obtained by embedding in LR White resin is not adequate for
brain immuno labeling. Since osmium tetroxide is not usually used in LR
White embedding protocol, the lipid bilayer can be severely extracted
during the dehydration or "melted" during the subsequent polymerization in
oven (50 degree C).

For the preservation of antigenicity, the pre-embedding method is also
more suitable compared to the resin embedding as the only treatment in
pre-embedding labeling that could potentially alter the antigen structure
is the initial fixation.

Nevertheless, post-embedding method has been used to answer specific
localization questions in brain tissue. In these cases, the low
temperature embedding method (high pressure freezing, cryo-substitution,
and Lowicryl embedding) were usually preferred, and sometimes,
cryo-ultramicrotomy.

The type of fixative to use depends on the "tolerance" of the epitope(s)
that a particular antibody binds to. The antibody vendors often provide
the information on suitable fixation. Information can also be found in
literature. However, one does need to pay attention to the source of
antibody in literature search. Antibodies can be made to bind different
epitopes of the same protein. A suitable fixative for labeling using a
particular antibody does not guarantee the same positive result when a
different antibody is used even if both are against the same protein.


Hope this helps. Feel free to contact me off-line more detail is needed.
Thank you.


Hong



On 10/21/11 3:22 PM, "bozzola-at-siu.edu" {bozzola-at-siu.edu} wrote:

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22, 39 -- Subject: Re: [Microscopy] EM: Immune Labeling of Neurological Tissues
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From: nizets2-at-yahoo.com
Date: Tue, 25 Oct 2011 02:57:01 -0500
Subject: [Microscopy] down the sink

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

When I read about thowing the resin in the sink (can't even imagine imagining it), it reminds me of a special "freaky" moment during my PhD thesis.
I was working on HTLV-I (human T-cell leukemia virus type I), the other human retrovirus and as kind to human beings as HIV is. Especially, we were growing cells containing the provirus in culture (the cells have integrated the viral genome in their own genome). Needless to say that we were very far from biosafety level 2 conditions back then. As usual in cell culture procedure, the medium was regularly changed, which involved throwing the old medium in the sink and giving fresh medium to the cells. Of course the first time I was asked to do that I asked my supervisor if we were not disseminating viral particles in the environment and she replied that the cells were producing "minimal amounts" of virus and that anyway the particles will be extremely diluted in the environment and that a minimal virus concentration was necessary to effectively infect. As naive as a student can be, I believed this experienced researcher knew what we were doing.
It is only years later that I read about the cells producing more-than-minimal amounts of virus!
Kind of scientific terrorism, isn't it?
 
Stephane


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2, 36 -- Date: Tue, 25 Oct 2011 00:56:59 -0700 (PDT)
2, 36 -- From: Stephane Nizet {nizets2-at-yahoo.com}
2, 36 -- Reply-To: Stephane Nizet {nizets2-at-yahoo.com}
2, 36 -- Subject: down the sink
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 25 Oct 2011 07:08:41 -0500
Subject: [Microscopy] viaWWW:Peak position, shape and resolution deterioration using Silicon

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
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Email: corrie.van-hoek-at-tatasteel.com Name: Corrie van Heok

Organization: Tata Steel Europe

Title-Subject: [Filtered] Peak position, shape and resolution
deterioration using Silicon Drift Detectors

Message: We use Thermo SDD detectors mounted on a JEOL-7001F microscope
for rapid collection of X-rays for Spectral Imaging, Inclusion analysis
and light element analysis. A first detector set was showing, within a
year, a peak shift, a strong tailing on the left side of peak and a
decrease in peak resolution in the low energy range (0-1keV) and has
therefore replaced. The 2nd set of SDD detectors, installed approx. one
year ago, is now showing the same phenomena. With the experience of the
first detector set in mind, a relative low beam current was selected
(10-20nA resulting in approx 60.000 counts/sec). According to the
supplier, X-ray photons can permanently damage the crystal structure
resulting in the phenomena described. The guaranteed number of counts
hitting the detector without causing damaging is 1.0E+12. This number
seems to be enormous, but the reality is, using a detector at 60.000
counts/sec, 24 hrs/day, 7 days/wk, it can be used in an optimal
condition for only half a year. Even just doing imaging on the
microscope is contributing to the crystal damage.

We like to warn SDD users and ask if anyone else has experienced this
phenomenon.


Login Host: 145.8.104.65
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10, 26 -- Subject: viaWWW:Peak position, shape and resolution deterioration using Silicon
10, 26 -- Drift Detectors
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From: connellyps-at-nhlbi.nih.gov
Date: Tue, 25 Oct 2011 09:57:23 -0500
Subject: [Microscopy] MT2 maintenance directions from Pat

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Friends,

Several months back there was a request made on the Listserv for directions
on how to maintain MT2 and MT2B ultramicrotomes. I offered to write out the
directions and send them to anyone who wished a copy. It was not put on the
Listserv. For there were only 4 or 5 who requested the information.

I have lost (probably deleted by mistake) my copy and would like to have it
again. If any of you have that file please send me a copy. There has been
another request for it already and do not have the time to recreate the
file.

Thanks,
Pat

Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E ­ Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}



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From: parishcm-at-ornl.gov
Date: Tue, 25 Oct 2011 10:30:23 -0500
Subject: [Microscopy] RE: viaWWW:Peak position,

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I can't say we've noticed this problem ourselves, but let me pose a tangentially related question to the listserver and the community.

We currently use a Philips CM200 (S)TEM equipped with a Si(Li) detector to support our irradiated materials programs. We are hoping to replace the CM in the indeterminate future with a new (S)TEM tool, and the new tool will certainly have one or more SDD chips.

Has anyone experimented with or thought about the effect hot betas or gammas would have on an SDD? We would probably not allow alpha-radioactive materials (i.e., fuels) into a new microscope, but we routinely see highly activated beta/gamma specimens that effect dead times, count rates, etc., on the Si(Li) detector. I would be interested in anyone's thoughts or experience of SDDs in a beta/gamma environment.

Does anyone know any papers that might discuss protocols or considerations for EDS analysis of toasty samples? I would appreciate citations if any pop to mind. Thanks!

Chad Parish
ORNL



-------
Email: corrie.van-hoek-at-tatasteel.com Name: Corrie van Heok

Organization: Tata Steel Europe

Title-Subject: [Filtered] Peak position, shape and resolution
deterioration using Silicon Drift Detectors

Message: We use Thermo SDD detectors mounted on a JEOL-7001F microscope
for rapid collection of X-rays for Spectral Imaging, Inclusion analysis
and light element analysis. A first detector set was showing, within a
year, a peak shift, a strong tailing on the left side of peak and a
decrease in peak resolution in the low energy range (0-1keV) and has
therefore replaced. The 2nd set of SDD detectors, installed approx. one
year ago, is now showing the same phenomena. With the experience of the
first detector set in mind, a relative low beam current was selected
(10-20nA resulting in approx 60.000 counts/sec). According to the
supplier, X-ray photons can permanently damage the crystal structure
resulting in the phenomena described. The guaranteed number of counts
hitting the detector without causing damaging is 1.0E+12. This number
seems to be enormous, but the reality is, using a detector at 60.000
counts/sec, 24 hrs/day, 7 days/wk, it can be used in an optimal
condition for only half a year. Even just doing imaging on the
microscope is contributing to the crystal damage.

We like to warn SDD users and ask if anyone else has experienced this
phenomenon.




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15, 38 -- Subject: RE: [Microscopy] viaWWW:Peak position,
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 25 Oct 2011 12:43:15 -0500
Subject: [Microscopy] viaWWW:Synaptic vesicle size definition

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Email: jmircheski-at-us.es Name: Josif

Organization: University of Seville (IBiS), Spain

Title-Subject: [Filtered] Synaptic vesicle size definition

Message: Dear Listers,
I hope you can help me yet again with a small doubt
I have.
I'm analyzing some neuro-muscular junctions, and I am
quantifying the vesicles present in there. Apart from the synaptic
vesicles, I'm interested in vesicles in general (lysosomes, endosomes,
vacuoles etc. anything vesicular) and I'm measuring their size. So I get
values ranging from some 20 or less nm up to hundreds of nms (radius).


The question is: if only looking at the values (area/diameter/radius),
can one tell which vesicle is a synaptic vesicle and which one is
something else (doesn't have to be strictly defined, just grouped in
"other")?
Is there any "limit" in a size parameter for a vesicle to be
considered as a synaptic?
In some literature: average diameter 40nm.
I remember that there are some at 60nm, too, if I'm not wrong. What
about the border values? What about 80, or 90 or 100 nm?
I should stop
writing now as more and more questions are coming out....
Waiting for your
help.
Regards,
Josif
P.S. I am sure there must be some old (or
new) literature on this, just I can't find anything today.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 25 Oct 2011 12:44:36 -0500
Subject: [Microscopy] viaWWW:Scientific Terrorism

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Email: bplowman-at-pacific.edu Name: Barbara Plowman

Organization: University Of the Pacific
Title-Subject: [Filtered] "Scientific Terrorism"

Message: The waste media should be treated with 9% bleach which will
kill the virus.

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From: frank_karl-at-ardl.com
Date: Tue, 25 Oct 2011 13:09:57 -0500
Subject: [Microscopy] was Scientific Terrorism now bleach content

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Only because I'm interested, is that a 9% solution of commercial bleach or a solution containing 9% sodium hypochlorite? As an side note, I once titrated a commercial solution of a national brand containing 6% sodium hypochlorite and found only 3%. I simply went out an bought a different case of the bleach from a store and it had 6%.

Frank



Email: bplowman-at-pacific.edu Name: Barbara Plowman

Organization: University Of the Pacific
Title-Subject: [Filtered] "Scientific Terrorism"

Message: The waste media should be treated with 9% bleach which will
kill the virus.



This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.


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From: DusevichV-at-umkc.edu
Date: Tue, 25 Oct 2011 15:40:19 -0500
Subject: [Microscopy] was Scientific Terrorism now bleach content

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Back in the early 70's I was Freeze Etching and the procedure for cleaning the replicas called for 9% Sodium hypochlorite. Went crazy until I saw the label of my bottle of Chlorox bleach near my washing machine - 9%! It worked great for a while and then the digestion was not working so well. The grapevine told me that bleach looses its "umph" as it gets old so I bought a new bottle and all worked as well as I had hoped. Maybe the 3% Karl had was just an old bottle of 6%.

Pat
Patricia Stranen Connelly
Research Assistant
NHLBI Electron Microscopy Core
National Institutes of Health
14 Service Road West
Bldg. 14E - Rm. 111B MSC 5570
Bethesda, MD 20892-5570
Phone 301-496-3491
FAX 301-402-0170
connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}

Opinions and experiences related are those of Pat Connelly and do not represent the NIH. This message is not confidential and can be freely shared and reproduced.


________________________________
X-from: {frank_karl-at-ardl.com}
Reply-To: {frank_karl-at-ardl.com}

Around me everybody is working with mineralized tissue (School of Dentistry, you know...) "Etch and bleach" procedure is quite popular, and its purpose is to observe etched surface of mineral when it is free of collagen. From time to time I am getting from graduate students specimens, which were not bleached properly and some collagen still remained on surface. Every time it was caused by old bottle of sodium hypochlorite (reagent). I recommend (and use for my specimens) household bleach, and I mean household bleach: I bring it from my home in my special small "bleach bottle" when needed. Our washing machine works hard to keep it always fresh.

Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Director
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

} -----Original Message-----
} From: connellyps-at-nhlbi.nih.gov [mailto:connellyps-at-nhlbi.nih.gov]
} Sent: Tuesday, October 25, 2011 2:32 PM
} To: Dusevich, Vladimir
} Subject: [Microscopy] Re: was Scientific Terrorism now bleach content
}
}
}
}
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}
} Back in the early 70's I was Freeze Etching and the procedure for
} cleaning the replicas called for 9% Sodium hypochlorite. Went crazy
} until I saw the label of my bottle of Chlorox bleach near my washing
} machine - 9%! It worked great for a while and then the digestion was
} not working so well. The grapevine told me that bleach looses its
} "umph" as it gets old so I bought a new bottle and all worked as well
} as I had hoped. Maybe the 3% Karl had was just an old bottle of 6%.
}
} Pat
} Patricia Stranen Connelly
} Research Assistant
} NHLBI Electron Microscopy Core
} National Institutes of Health
} 14 Service Road West
} Bldg. 14E - Rm. 111B MSC 5570
} Bethesda, MD 20892-5570
} Phone 301-496-3491
} FAX 301-402-0170
} connellyps-at-mail.nih.gov {mailto:connellyps-at-mail.nih.gov}
}
} Opinions and experiences related are those of Pat Connelly and do not
} represent the NIH. This message is not confidential and can be freely
} shared and reproduced.
}
}
} ________________________________
} X-from: {frank_karl-at-ardl.com}
} Reply-To: {frank_karl-at-ardl.com}
} Date: Tue, 25 Oct 2011 14:12:47 -0400
} To: "Connelly, Patricia (NIH/NHLBI) [E]" {connellyps-at-nhlbi.nih.gov}
} Subject: [Microscopy] was Scientific Terrorism now bleach content
}
}
} Only because I'm interested, is that a 9% solution of commercial bleach
} or a solution containing 9% sodium hypochlorite? As an side note, I
} once titrated a commercial solution of a national brand containing 6%
} sodium hypochlorite and found only 3%. I simply went out an bought a
} different case of the bleach from a store and it had 6%.
}
} Frank
}
}
}
} Email: bplowman-at-pacific.edu Name: Barbara Plowman
}
} Organization: University Of the Pacific
} Title-Subject: [Filtered] "Scientific Terrorism"
}
} Message: The waste media should be treated with 9% bleach which will
} kill the virus.
}
}
}
}
} ==============================Original
} Headers==============================
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From: sathya_sr70-at-hotmail.com
Date: Tue, 25 Oct 2011 16:37:46 -0500
Subject: [Microscopy] =?windows-1256?Q?RE:_was_Sc?= =?windows-1256?Q?ientific_T?=

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Sodium hypochlorite degrades on storage. One statement on the net states: "The solution loses strength over time. The rate of degradation increases with heat and sunlight. Storage time is recommended to be less than 28 days. A max. storage life is about 60 to 90 days, depending on the solution storage temperature." Depending on how long the commercial bleach was sitting on shelf or in your lab, you would have observed the variation.

Sathya Srinivasan
Research Associate
Experimental Imaging Centre
University of Calgary

==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 26 Oct 2011 06:48:29 -0500
Subject: [Microscopy] viaWWW:Bleach

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Organization: University of the Pacific, Arthur A. Dugoni School of
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Title-Subject: [Filtered] Bleach

Message: We use a Fisher brand of bleach. Could that have been a quality
control problem?

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 26 Oct 2011 06:48:59 -0500
Subject: [Microscopy] viaWWW:Amscope camera question

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Email: michael.cammer-at-med.nyu.edu Name: Michael Cammer

Organization: Skirball Institute of Biomolecular Medicine

Title-Subject: [Filtered] Amscope camera question

Message: If anyone out there has the Amscope mt-5000, would you please
give us a review privately. We are thinking of purchasing one for our
fluorescent stereoscope.

http://store.amscope.com/mt5000-ccd-ck.html
Captures 5.0MP (2580X1944) high resolution fluorescence microscopy
images • Image Sensor: 2/3" Sony Color CCD, Model ICX282AQ • CCD Scan
Mode: Interline • Pixel Size: 3.4micron x 3.4micron • Resolution:
2580(H) x 1944(V) Pixels • G Sensitivity: 280mV • Filter: RGB Bayer
Pattern • Port: Standard C-Mount • Frame Rate: 3 fps -at- 2580x1944
pixels; 10 fps -at- 1280x932 pixels • Low-speed Readout: Yes • A/D
conversion: 12 bit • Peltier Cooled: -30°C below ambient
connects via USB


Thanks!!

________________________________________________________
Michael Cammer, Assistant Research Scientist
Skirball Institute of Biomolecular Medicine
Lab: (212) 263-3208 Cell: (914) 309-3270


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From: frank_karl-at-ardl.com
Date: Wed, 26 Oct 2011 13:16:34 -0500
Subject: [Microscopy] LKB glass knife maker

Contents Retrieved from Microscopy Listserver Archives
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Hello Everyone,
I have discovered our LKB 2178 knife maker II doesn't work. I know Ted Pella repairs them, but I was hoping to find someone east of the Mississippi River. Failing that, does anyone know were I can buy the cutting wheel and springs. I would be willing to give DIY a try, but I really need the replacement parts.

Thanks!!!!!!

Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



________________________________
This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.


==============================Original Headers==============================
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From: stefan.diller-at-t-online.de
Date: Wed, 26 Oct 2011 13:51:25 -0500
Subject: [Microscopy] Re: LKB glass knife maker

Contents Retrieved from Microscopy Listserver Archives
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Hello Frank,
I have the manuals of LKB how to set things right with the knifemaker. It`s "easy"; mostly cleaning parts from glass particles,
greasing new, doing some minor adjustments. Email me for the link.

Best regards,
Stefan


-----------------------------------------------------
Stefan Diller - Wissenschaftliche Photographie
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 26.10.11 20:22, schrieb frank_karl-at-ardl.com:
} ----------------------------------------------------------------------------
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}
} Hello Everyone,
} I have discovered our LKB 2178 knife maker II doesn't work. I know Ted Pella repairs them, but I was hoping to find someone east of the Mississippi River. Failing that, does anyone know were I can buy the cutting wheel and springs. I would be willing to give DIY a try, but I really need the replacement parts.
}
} Thanks!!!!!!
}
} Frank Karl
} Microscopist
} ARDL
} 2887 Gilchrist Road
} Akron, Ohio 44305
} 330-794-6600
}
}
}
} ________________________________
} This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.
}
}
} ==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Wed, 26 Oct 2011 14:59:42 -0500
Subject: [Microscopy] Re: LKB glass knife maker

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Frank,

I have a couple of cutting wheels and axles, and damping pads, for a
LKB 7801 B. If they'll fit, you can have them. No springs, though.

Phil

} Hello Everyone,
} I have discovered our LKB 2178 knife maker II doesn't work. I know
} Ted Pella repairs them, but I was hoping to find someone east of the
} Mississippi River. Failing that, does anyone know were I can buy
} the cutting wheel and springs. I would be willing to give DIY a
} try, but I really need the replacement parts.
}
} Thanks!!!!!!
}
} Frank Karl
} Microscopist
} ARDL
} 2887 Gilchrist Road
} Akron, Ohio 44305
} 330-794-6600

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 26 Oct 2011 20:30:41 -0500
Subject: [Microscopy] viaWWW:proper care of micropipette

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Email: mlibbee-at-gmail.com Name: Marissa Mancuso

Organization: NCEM at LBL

Title-Subject: [Filtered] proper care of micropipette

Message: Listers-

Our prep labs were in need of a micropipette for drop casting
nanoparticles and it has arrived. Before I make it available, I would
like to get some suggestions on how to properly maintain it (e.g. how to
store it btwn use) within a user facility to avoid issues of
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Marissa

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From: kiss-at-demet.ufrgs.br
Date: Thu, 27 Oct 2011 11:21:47 -0500
Subject: [Microscopy] Olympus DP12-2 Technical manual

Contents Retrieved from Microscopy Listserver Archives
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Dear Listers:
We need the technical or repair manual (not operation manual)for our
Olympus DP 12 -2 digital camera for optical microscope.
It has an intermitent display on the control box and we suspect that
it is an contact problem at the hinge.
Either soft or hard copy will do.
Thanks in advance....
Regards
kiss


Dr Francisco José Kiss
Universidade Federal do Rio Grande do Sul
Escola de Engenharia - Dpto. de Metalurgia
Av Osvaldo Aranha 99 S610
90046-900 Porto Alegre - RS
e-mail: kiss-at-demet.ufrgs.br
fone +55 51 3308 3414
{


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From: zackg-at-berkeley.edu
Date: Thu, 27 Oct 2011 16:22:53 -0500
Subject: [Microscopy] SEM - Reducing carbon deposition

Contents Retrieved from Microscopy Listserver Archives
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Hi All,

I will have an experiment that will require relatively low carbon deposition rates, and I am expecting I'll need to impose "draconian" limitations on the microscope for a few days before doing this experiment. This is in a tungsten LV-SEM with a fairly large sample chamber. It's pumped by a scroll pump in LVac, and a scroll behind a turbo in HVac. We are already using gloves and leaving it in low-vac N2 overnight, etc., but I was wondering if you folks had any simple actions you've found successful in reducing the C contamination within your chambers over and above the usual vacuum maintenance activities, for example, not using carbon paint to mounts your samples, etc.

Thank you in advance!

Zack Gainsforth
Space Sciences Laboratory, UC Berkeley
7 Gauss Way
Berkeley, CA 94720
510-642-9733
zackg-at-ssl.berkeley.edu






==============================Original Headers==============================
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From: donovan-at-uoregon.edu
Date: Thu, 27 Oct 2011 17:45:27 -0500
Subject: [Microscopy] Re: SEM - Reducing carbon deposition

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Zack,
When I bought my Cameca Sx100 about 6 years ago, the dollar had
fallen against the Euro and I could no longer afford a turbo pumped
system. But Cameca and I discussed a cryo baffle trap for the
diffusion pump and they eventually supplied a "Cryo-Tiger" or
"Aqua-Trap" system that runs at 100K degrees and was designed to pump
water in a vacuum. Of course at that temperature it pumps
hydrocarbons even better.

The compressor is air cooled and I just leave it on all the time, and
although I was just expecting it to help with backstreaming from the
diffusion pump, I am totally impressed with the degree that this cryo
system not only eliminates backstreaming from the diffusion pump, but
even stabilizes the carbon contamination signal on my instrument.
Under normal conditions, I cannot detect an increase in carbon ka for
many minutes and even then it's around 1 or 2 sigma.

I really like it and highly recommend it for others that don't have
an ultra-high vacuum or "dry" pump system.
john



At 02:28 PM 10/27/2011, zackg-at-berkeley.edu wrote:



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From: vray-at-partbeamsystech.com
Date: Thu, 27 Oct 2011 17:59:37 -0500
Subject: [Microscopy] Re: SEM - Reducing carbon deposition

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Zak,

Carbon itself does not evaporate or outgass in vacuum at room
temperature, so it would be safe to use water-based Aquadag type of
carbon paint for sample mounting.

What you want to avoid is anything and everything of organic or polymer
nature that still can fly, float, or even slowly creep over the surface.
Meaning - nothing sticky (no carbon pads, double-sided or any other
sticky tapes, etc...), no glues (other then water-based Aquadag,
TorrSeal, Hyson-1C, and Ted Pellas high-conductivity colloidal silver)
no plastics (other then PEEK, Teflon, or kapton/polyimide), and the last
but probably the most important - get the Evactron and run it for couple
of hours before loading your sample and (if sample allows it) then for
15 minutes with the sample already in chamber...

If your sample can't stand oxygen plasma at all and therefore is not
compatible with Evactron cleaning, then immediatelly before loading it
to SEM you can treat the sample in UV/Ozone cleaner for couple of hours.

Ah, yes, make sure that SEM stage is/was lubricated only by something
with critical vapor pressure in E-9 range (TorrLube, Y-25, or similar),
otherwise outgassing of carbon-containing molecules from the stage
lubrication will make all the precautions fairly irrelevant...

Good luck :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 10/27/2011 5:24 PM, zackg-at-berkeley.edu wrote:
} ----------------------------------------------------------------------------
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} Hi All,
}
} I will have an experiment that will require relatively low carbon deposition rates, and I am expecting I'll need to impose "draconian" limitations on the microscope for a few days before doing this experiment. This is in a tungsten LV-SEM with a fairly large sample chamber. It's pumped by a scroll pump in LVac, and a scroll behind a turbo in HVac. We are already using gloves and leaving it in low-vac N2 overnight, etc., but I was wondering if you folks had any simple actions you've found successful in reducing the C contamination within your chambers over and above the usual vacuum maintenance activities, for example, not using carbon paint to mounts your samples, etc.
}
} Thank you in advance!
}
} Zack Gainsforth
} Space Sciences Laboratory, UC Berkeley
} 7 Gauss Way
} Berkeley, CA 94720
} 510-642-9733
} zackg-at-ssl.berkeley.edu
}
}
}
}
}
}
} ==============================Original Headers==============================
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} 9, 22 -- Subject: SEM - Reducing carbon deposition
} 9, 22 -- Date: Thu, 27 Oct 2011 14:22:51 -0700
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From: vray-at-partbeamsystech.com
Date: Thu, 27 Oct 2011 18:00:28 -0500
Subject: [Microscopy] Re: SEM - Reducing carbon deposition

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Zak,

Carbon itself does not evaporate or outgass in vacuum at room
temperature, so it would be safe to use water-based Aquadag type of
carbon paint for sample mounting.

What you want to avoid is anything and everything of organic or polymer
nature that still can fly, float, or even slowly creep over the surface.
Meaning - nothing sticky (no carbon pads, double-sided or any other
sticky tapes, etc...), no glues (other then water-based Aquadag,
TorrSeal, Hyson-1C, and Ted Pellas high-conductivity colloidal silver)
no plastics (other then PEEK, Teflon, or kapton/polyimide), and the last
but probably the most important - get the Evactron and run it for couple
of hours before loading your sample and (if sample allows it) then for
15 minutes with the sample already in chamber...

If your sample can't stand oxygen plasma at all and therefore is not
compatible with Evactron cleaning, then immediatelly before loading it
to SEM you can treat the sample in UV/Ozone cleaner for couple of hours.

Ah, yes, make sure that SEM stage is/was lubricated only by something
with critical vapor pressure in E-9 range (TorrLube, Y-25, or similar),
otherwise outgassing of carbon-containing molecules from the stage
lubrication will make all the precautions fairly irrelevant...

Good luck :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 10/27/2011 5:24 PM, zackg-at-berkeley.edu wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi All,
}
} I will have an experiment that will require relatively low carbon deposition rates, and I am expecting I'll need to impose "draconian" limitations on the microscope for a few days before doing this experiment. This is in a tungsten LV-SEM with a fairly large sample chamber. It's pumped by a scroll pump in LVac, and a scroll behind a turbo in HVac. We are already using gloves and leaving it in low-vac N2 overnight, etc., but I was wondering if you folks had any simple actions you've found successful in reducing the C contamination within your chambers over and above the usual vacuum maintenance activities, for example, not using carbon paint to mounts your samples, etc.
}
} Thank you in advance!
}
} Zack Gainsforth
} Space Sciences Laboratory, UC Berkeley
} 7 Gauss Way
} Berkeley, CA 94720
} 510-642-9733
} zackg-at-ssl.berkeley.edu
}
}
}
}
}
}
} ==============================Original Headers==============================
} 9, 22 -- From zackg-at-berkeley.edu Thu Oct 27 16:22:52 2011
} 9, 22 -- Received: from cm06fe.IST.Berkeley.EDU (cm06fe.IST.Berkeley.EDU [169.229.218.147])
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} 9, 22 -- From: Zack Gainsforth {zackg-at-berkeley.edu}
} 9, 22 -- Content-Type: text/plain; charset=us-ascii
} 9, 22 -- Subject: SEM - Reducing carbon deposition
} 9, 22 -- Date: Thu, 27 Oct 2011 14:22:51 -0700
} 9, 22 -- References: {BF5A6C75-1DAF-4D85-9B60-FF60C3674870-at-ssl.berkeley.edu}
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From: vray-at-partbeamsystech.com
Date: Thu, 27 Oct 2011 18:35:42 -0500
Subject: [Microscopy] Re: SEM - Reducing carbon deposition

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Zak,

You are welcome. The difference between water-based aquadag and carbon
tape comes from the fact that tape contains carbon and the glue.

Carbon itself is a solid and its critical vapor pressure at room
temperature should be quite low. I do not remember exact value of CVP of
C, and am out of my office to look it up at this moment, but I do know C
must be heated to 2500K to get it sublimate in vacuum. This tells me
that C should not be volatile at 273K. Solid carbon therefore has no way
to migrate onto your sample and show up in the experiment, even if it is
present in the chamber. That is why water-based Aquagad paint should be
safe - it contains only carbon powder and DI water.

Glue however is a very different story. Almost any glue will contain
some un-polymerized organic molecules, which will outgass (even if that
is with extremely low partial pressures) and make a way to the area
where electron beam hits the sample. Most organic molecules would be
broken by electron beam radiation and will deposit carbon in some
quantities...

Cheers :)
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 10/27/2011 7:03 PM, Zack Gainsforth wrote:
} Hi Valery,
}
} Just what I was looking for! I will check into these points and let you know what I find. I find it interesting you think carbon paint is OK, but tape isn't. I'll do an experiment and see if it is in fact cleaner in my system.
}
} Thank you very much!
}
} Zack
}
}
}
}
} On Oct 27, 2011, at 3:59 PM, vray-at-partbeamsystech.com wrote:
}
} Hi Zak,
}
} Carbon itself does not evaporate or outgass in vacuum at room temperature, so it would be safe to use water-based Aquadag type of carbon paint for sample mounting.
}
} What you want to avoid is anything and everything of organic or polymer nature that still can fly, float, or even slowly creep over the surface. Meaning - nothing sticky (no carbon pads, double-sided or any other sticky tapes, etc...), no glues (other then water-based Aquadag, TorrSeal, Hyson-1C, and Ted Pellas high-conductivity colloidal silver) no plastics (other then PEEK, Teflon, or kapton/polyimide), and the last but probably the most important - get the Evactron and run it for couple of hours before loading your sample and (if sample allows it) then for 15 minutes with the sample already in chamber...
}
} If your sample can't stand oxygen plasma at all and therefore is not compatible with Evactron cleaning, then immediatelly before loading it to SEM you can treat the sample in UV/Ozone cleaner for couple of hours.
}
} Ah, yes, make sure that SEM stage is/was lubricated only by something with critical vapor pressure in E-9 range (TorrLube, Y-25, or similar), otherwise outgassing of carbon-containing molecules from the stage lubrication will make all the precautions fairly irrelevant...
}
} Good luck :)
}
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063 - leave a message with call-back number
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
} Web: www.freudlabs.com
}
} On 10/27/2011 5:24 PM, zackg-at-berkeley.edu wrote:
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Hi All,
} }
} } I will have an experiment that will require relatively low carbon deposition rates, and I am expecting I'll need to impose "draconian" limitations on the microscope for a few days before doing this experiment. This is in a tungsten LV-SEM with a fairly large sample chamber. It's pumped by a scroll pump in LVac, and a scroll behind a turbo in HVac. We are already using gloves and leaving it in low-vac N2 overnight, etc., but I was wondering if you folks had any simple actions you've found successful in reducing the C contamination within your chambers over and above the usual vacuum maintenance activities, for example, not using carbon paint to mounts your samples, etc.
} }
} } Thank you in advance!
} }
} } Zack Gainsforth
} } Space Sciences Laboratory, UC Berkeley
} } 7 Gauss Way
} } Berkeley, CA 94720
} } 510-642-9733
} } zackg-at-ssl.berkeley.edu
} }
} }
} }
} }
} }
} }
} } ==============================Original Headers==============================
} } 9, 22 -- From zackg-at-berkeley.edu Thu Oct 27 16:22:52 2011
} } 9, 22 -- Received: from cm06fe.IST.Berkeley.EDU (cm06fe.IST.Berkeley.EDU [169.229.218.147])
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} } 9, 22 -- From: Zack Gainsforth {zackg-at-berkeley.edu}
} } 9, 22 -- Content-Type: text/plain; charset=us-ascii
} } 9, 22 -- Subject: SEM - Reducing carbon deposition
} } 9, 22 -- Date: Thu, 27 Oct 2011 14:22:51 -0700
} } 9, 22 -- References: {BF5A6C75-1DAF-4D85-9B60-FF60C3674870-at-ssl.berkeley.edu}
} } 9, 22 -- To: Microscopy-at-microscopy.com
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From: baskin-at-bio.umass.edu
Date: Thu, 27 Oct 2011 21:22:01 -0500
Subject: [Microscopy] slow drying clean 'glue' for SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings,
In the recent thread on minimizing carbon contamination in
the SEM, a commenter cited a group of water based compounds as being
good to use. They were: water-based Aquadag,
TorrSeal, Hyson-1C, and Ted Pellas high-conductivity colloidal
silver. I tried one of them and the stuff was really syrupy and set
quickly so that my small and fussy samples were all but impossible to
mount in it. I wonder if the original poster (Valery Ray) or anyone
might point me to something like this but that is not too viscous and
that sets slowly (actually I'd settle for either). I'd love to get
away from sticky tape.
Many thanks,
Tobias
--
_ ____ __ ____
/ \ / / \ / \ \ Tobias I. Baskin
/ / / / \ \ \ Professor
/_ / __ /__ \ \ \__ Biology Department
/ / / \ \ \ 611 N. Pleasant St.
/ / / \ \ \ University of
Massachusetts
/ / ___ / \ \__/ \ ____ Amherst, MA, 01003
www.bio.umass.edu/biology/baskin
Voice: 413 - 545 - 1533 Fax: 413 - 545 - 3243

==============================Original Headers==============================
1, 19 -- From baskin-at-bio.umass.edu Thu Oct 27 21:22:01 2011
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From: vray-at-partbeamsystech.com
Date: Fri, 28 Oct 2011 00:08:51 -0500
Subject: [Microscopy] Re: slow drying clean 'glue' for SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Tobias,

Just for clarity:

Aquadag is water-based and fairly conductive. If it is too syrupy then
it can be diluted with DI water to any consistency. If after dilution
dried layer is too thin, then you can re-coat after drying. In diluted
condition it handles just like paint.

"Conductive Liquid Silver Paint" or "Colloidal Silver Liquid" from Ted
Pella is solvent-based and very conductive, also has almost no binder.
It can be gently baked in vacuum oven (if sample allows) and has almost
no outgassing after the bake. If it is too syrupy then it can be diluted
to any consistency by the "extender" which is also sold by Ted Pella :)

Hysol-1C and TorrSeal (which are in reality the same exact thing,
TorrSeal is a re-branded Hysol-1C) are AFAIK all-solid epoxies and thus
viscous. They also not conductive.

There is another glue that I worked with, which has quite low outgassing
- it is sold by Allied High Tech as "Epoxy Bond 110". Very liquid after
mixing and would not thicken at all until heated. The catch is that it
requires heat for curing and not conductive.

I would also be very interested to learn if there are other
no-outgassing or low-outgassing glues out there...

Cheers :)
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 10/27/2011 10:21 PM, Tobias Baskin wrote:
} Greetings,
} In the recent thread on minimizing carbon contamination in the SEM, a
} commenter cited a group of water based compounds as being good to use.
} They were: water-based Aquadag,
} TorrSeal, Hyson-1C, and Ted Pellas high-conductivity colloidal silver. I
} tried one of them and the stuff was really syrupy and set quickly so
} that my small and fussy samples were all but impossible to mount in it.
} I wonder if the original poster (Valery Ray) or anyone might point me to
} something like this but that is not too viscous and that sets slowly
} (actually I'd settle for either). I'd love to get away from sticky tape.
} Many thanks,
} Tobias

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9, 39 -- CC: microscopy-at-microscopy.com
9, 39 -- Subject: Re: slow drying clean 'glue' for SEM
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From: frank_karl-at-ardl.com
Date: Fri, 28 Oct 2011 09:12:12 -0500
Subject: [Microscopy] x-ray fluorescence element maps

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


The listserver has always been my choice for information and help, so here I go again.

Our lab was sipping coffee and talking about incorporating x-ray fluorescence into the SEM/EDS system. We liked the idea: no charged particle decelerating so no bremsstrahlung, but how do you get an element distribution map without moving the sample?

I understand how the SEM and CRTs move the electron beam in a raster, but it seems to me, you have to move the sample to sweep the collimated x-ray beam across the surface. I can't find anything in the add about that.

Any thoughts?

Have a great week-end...............

Frank


Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



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From: lgordon-at-gmail.com
Date: Fri, 28 Oct 2011 09:51:51 -0500
Subject: [Microscopy] slow drying clean 'glue' for SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Another low vapor-pressure conductive adhesive is Epoxy Technology
(Epo-tek) H20E. It is a silver filled heat curing epoxy. If your
sample can tolerate being heated to 80C then its great. albeit
somewhat expensive. It is a little viscous as it contains a fair
amount of silver. We use it consistently in 10^-9 torr at room
temperature and also at 10^-11 at cryogenic temperatures.

I have no connection with Epo-tek just a satisfied customer.

-Lyle

--
Lyle Gordon
Department of Materials Science and Engineering
Northwestern University

2220 Campus Drive
Evanston, IL 60208

Tel: (847) 491-3584
Mobile: (847) 400-4071
lgordon-at-u.northwestern.edu



On Fri, Oct 28, 2011 at 12:17 AM,   {vray-at-partbeamsystech.com} wrote:
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor:  The Microscopy Society of America
} To  Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
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}
} Hi Tobias,
}
} Just for clarity:
}
} Aquadag is water-based and fairly conductive. If it is too syrupy then
} it can be diluted with DI water to any consistency. If after dilution
} dried layer is too thin, then you can re-coat after drying. In diluted
} condition it handles just like paint.
}
} "Conductive Liquid Silver Paint" or "Colloidal Silver Liquid" from Ted
} Pella is solvent-based and very conductive, also has almost no binder.
} It can be gently baked in vacuum oven (if sample allows) and has almost
} no outgassing after the bake. If it is too syrupy then it can be diluted
} to any consistency by the "extender" which is also sold by Ted Pella :)
}
} Hysol-1C and TorrSeal (which are in reality the same exact thing,
} TorrSeal is a re-branded Hysol-1C) are AFAIK all-solid epoxies and thus
} viscous. They also not conductive.
}
} There is another glue that I worked with, which has quite low outgassing
} - it is sold by Allied High Tech as "Epoxy Bond 110". Very liquid after
} mixing and would not thicken at all until heated. The catch is that it
} requires heat for curing and not conductive.
}
} I would also be very interested to learn if there are other
} no-outgassing or low-outgassing glues out there...
}
} Cheers :)
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063 - leave a message with call-back number
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
} Web: www.freudlabs.com
}
} On 10/27/2011 10:21 PM, Tobias Baskin wrote:
} } Greetings,
} } In the recent thread on minimizing carbon contamination in the SEM, a
} } commenter cited a group of water based compounds as being good to use.
} } They were: water-based Aquadag,
} } TorrSeal, Hyson-1C, and Ted Pellas high-conductivity colloidal silver. I
} } tried one of them and the stuff was really syrupy and set quickly so
} } that my small and fussy samples were all but impossible to mount in it.
} } I wonder if the original poster (Valery Ray) or anyone might point me to
} } something like this but that is not too viscous and that sets slowly
} } (actually I'd settle for either). I'd love to get away from sticky tape.
} } Many thanks,
} } Tobias
}
} ==============================Original Headers==============================
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} 9, 39 -- CC: microscopy-at-microscopy.com
} 9, 39 -- Subject: Re: slow drying clean 'glue' for SEM
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 28 Oct 2011 19:41:26 -0500
Subject: [Microscopy] viaWWW:Immuno EM

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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Email: tbogea-at-mail.ubc.ca Name: Tami Bogea

Organization: University of British Columbia

Title-Subject: [Filtered] Immuno EM

Message: Hi everyone

Once again I turn to you for advice. I am working on a immuno-electron microscopy protocol to study
the localization of rhodopsin mutants in frog photoreceptors. Currently, I am using a
post-embedding method where the fixatives are made with phosphate buffer and the stains include 2%
aqueous uranyl acetate and Venables & Coggleshall's lead citrate. The labelling looks fine but the
sections show a lot of precipitate in the background. I would be pleased to hear your comments and
suggestions on how to minimize these precipitates. Would sodium cacodylate buffer be an option in
this case? Thanks a bunch!

Tami Bogea, PhD
Research Associate -- Ophthalmology & Visual Sciences
University of British Columbia
Login Host: 137.82.183.94
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From: delannoy-at-jhmi.edu
Date: Sat, 29 Oct 2011 09:49:42 -0500
Subject: [Microscopy] gold tails

Contents Retrieved from Microscopy Listserver Archives
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Hello all,
We recently have noticed a problem on our Phillips CM 120 TEM when imaging 12nm nanogold particles. At high magnifications (65,000 x) we see small image tails coming off of the gold particles. They are always in the same direction (diagonal pointing to about 7 o`clock). We have tried tilting the grid, corrected for astigmatism, higher Kv and smaller condenser, objective and final apertures. We can minimize it but it still remains. The conjugated gold is less than a year old, this is for post embed IEM labeling. Any thoughts?

Thanks in advance for any clues.

Michael Delannoy

==============================Original Headers==============================
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From: colijn.1-at-osu.edu
Date: Sat, 29 Oct 2011 12:34:32 -0500
Subject: [Microscopy] Re: gold tails

Contents Retrieved from Microscopy Listserver Archives
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Michael,

What you are describing sounds like a "coma" aberration. This arises
from your beam being off the optic axis when it goes through the
objective lens. Look to see if you have an image shift as you change
focus. This is a dead give-away that your beam centering is off. The
solution is to do a rotation center.

With the sample at the eucentric height, focus the image.
Set the tilt pivot points
Center the illumination. Focus the beam with C2 and select Algn |
Pivot Point X.Use the MF knobs to superimpose the spots.
Repeat with Algn| Pivot Point Y.
Rotation Center
Focus the beam at 60-100kX and center the illumination. Select
Algn| Rot Center and use the MF knobs to set the wobble point to the
center.The focus step will adjust the wobble amplitude.

I hope this helps.

Cheers,
Henk



At 10/29/2011 10:50 AM, delannoy-at-jhmi.edu wrote:
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} Hello all,
} We recently have noticed a problem on our Phillips CM 120 TEM when imaging 12nm nanogold particles. At high magnifications (65,000 x) we see small image tails coming off of the gold particles. They are always in the same direction (diagonal pointing to about 7 o`clock). We have tried tilting the grid, corrected for astigmatism, higher Kv and smaller condenser, objective and final apertures. We can minimize it but it still remains. The conjugated gold is less than a year old, this is for post embed IEM labeling. Any thoughts?
}
} Thanks in advance for any clues.
}
} Michael Delannoy
}
} ==============================Original Headers==============================
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--
Hendrik O. Colijn
www.ceof.ohio-state.edu
OSU Campus Electron Optics Facility colijn.1-at-osu.edu
040 Fontana Labs (614) 292-0674 (V)
116 W. 19th Ave. (614) 292-7523 (F)
Columbus, OH 43210

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."

==============================Original Headers==============================
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From: s.h.coetzee-at-gmail.com
Date: Sat, 29 Oct 2011 15:21:12 -0500
Subject: [Microscopy] Re: gold tails

Contents Retrieved from Microscopy Listserver Archives
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Dear Michael
These tails are they physical smaller particles or just a contrast
change in the image?
If it is a contrast change then do a complete re-allighnment.
Might be a aberration.

Stephan

On Sat, Oct 29, 2011 at 4:56 PM, {delannoy-at-jhmi.edu} wrote:
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} Hello all,
} We recently have noticed a problem on our Phillips CM 120 TEM when imaging 12nm nanogold particles.  At high magnifications (65,000 x) we see small image tails coming off of the gold particles. They are always in the same direction (diagonal pointing to about 7 o`clock).  We have tried tilting the grid, corrected for astigmatism, higher Kv and smaller condenser, objective and final apertures.  We can minimize it but it still remains.  The conjugated gold is less than a year old, this is for post embed IEM labeling.  Any thoughts?
}
} Thanks in advance for any clues.
}
} Michael Delannoy
}
} ==============================Original Headers==============================
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--
Stephan H Coetzee
EM Scientist
Electron Microscope Unit
University of Botswana


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From: sergei2-at-ornl.gov
Date: Mon, 31 Oct 2011 11:53:01 -0500
Subject: [Microscopy] MRS Spring 2012 - Local probing techniques and in-situ measurements in

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Dear colleagues - please note the symposium on "Local probing techniques
and in-situ measurements in materials science (CCC)" at the MRS Spring
meeting, with submission deadline tomorrow.


Sergei Kalinin



CCC. Local probing techniques and in-situ measurements in material sciences

The grand challenges of the clean energy future require new
breakthroughs in materials and systems, in which precision measurement
techniques, particularly nondestructive, real time, in situ, and local
probing techniques, will play a critical role. Those new emerging
characterization techniques will help reveal the microscopic mechanisms
underpinning the performance and life time of energy storage and
conversion systems.

This symposium is devoted to disseminating original research in applying
local probing techniques and in situ measurements to materials discovery
in general, , and to energy systems optimization, safety analysis,
failure diagnosis, and lifetime prediction, in particular. This
symposium will showcase the revelation of structures and properties of
materials using in situ scanning probe, microscopy, spectroscopy,
tomography, scattering, activation, and radiation measurements.

It is the goal of this symposium to bring together experts from
materials science, advanced characterization techniques, theoretical
community, and industry interested in the development of experimental
techniques capable of addressing fundamental mechanisms in materials
synthesis, process and applications. In addition to providing a platform
for discussing state-of-the-art local and in-situ characterization
methods, this symposium will help in formulating the outstanding
research needs, grand challenges, applications, and development pathway
for this rapidly emerging field.

We would like to encourage you to consider submitting an abstract to
this symposium.

Kind regards,

Nina Balke
Oak Ridge National Laboratory
balken-at-ornl.gov

Howard Wang
State University of New York, Binghamton
wangh-at-binghamton.edu

Job Rijssenbeek
GE Global Research
rijssenb-at-research.ge.com

Thilo Glatzel
University of Basel
Thilo.glatzel-at-unibas.ch

--
Sergei V. Kalinin
co-Theme Leader for Functional Imaging on the Nanoscale
The Center for Nanophase Materials Sciences
and Materials Sciences and Technology Division
Oak Ridge National Laboratory
Oak Ridge, TN 37922

Adjunct Associate Professor,
Department of Materials Science and Engineering,
University of Tennessee, Knoxville

Phone: (865) 241-0236
http://imaging.ornl.gov


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 31 Oct 2011 18:01:16 -0500
Subject: [Microscopy] viaWWW:Corresponding mags for taps on Philips 200

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Email: bplowman-at-pacific.edu Name: Barbara Plowman

Organization: University of the Pacific-Arthur A. Dugoni School of Dentistry
Title-Subject: [Filtered] Corresponding mags for taps on Philips 200

Message: Does anybody have the magnifications that correspond to the tap levels on the Philips 200
TEM? I have some old negatives I've been looking through and the log books list the tap number
instead of the magnifications. We sent that TEM to Canada in 1994. Thank you.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 31 Oct 2011 18:01:38 -0500
Subject: [Microscopy] viaWWW:Leica CM2800 frigocut clamp

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Email: mjones96-at-jhmi.edu Name: Melina Jones

Organization: Johns Hopkins University

Title-Subject: [Filtered] Leica CM2800 frigocut clamp

Message: Dear All,
We bought an ancient Leica Frigocut 2800 N from eBay and the specimen is clamped on to the microtome
by a twist and lock mechanism. This old thing is so worn, that twist does not lead to a perfect
lock and that little movement spells disaster for sectioning. I think I could replace the face of
this (the "specimen clamp") with something newer that might be more stable if it's less worn.
Anyone got parts laying around for any Leica model that's that old? It's held on by allen screws so
i think i can switch it out if i had another one. Any ideas? Leica's no help...

Thanks!



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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 1 Nov 2011 19:31:03 -0500
Subject: [Microscopy] viaWWW:TEM charging on tissue sections

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Email: blauman-at-american.edu Name: Sara Blauman

Organization: American University

Title-Subject: [Filtered] TEM charge on tissue sections

Message: I am trying to obtain cross sections of 1 mm square pieces of brain tissue that are 50
microns thick. I tried flat embedding the specimen, polymerizing, and then slipping the flat block
inside a BEEM capsule and filling it with resin and polymerizing again. I am doing this to try to
get the specimen so that it is not at the edge of the section since the sections sink to the bottom
in the flat mold. So there is a boundary between the two resins with the specimen at the boundary.
The resins were different batches and there is a difference in their color and the way they cut when
seen under magnification.

I hand trim with a razor blade, cut 700 nm thick sections, and finally 70 nm thin sections. All goes
well until I try to manipulate the thin sections in the boat. They stick to my eyelash tools by
wrapping around the eyelash every time I try to touch them. After about a minute after I stop
cutting, all the sections in the ribbon detach from each other and assume positions equidistant from
each other. Attempting to move the sections closer in order to pick them up in the loop is like
trying to move the north ends of two bar magnets toward each other. So all I am getting in my loop
is one section!

I thought that I read somewhere to put a drop of ethanol in the boat to eliminate static charge and
I tried this to no avail. I have also tried sectioning other "normal" blocks and I do not have the
problem with them.

Does anyone know how to remove the charge from the sections? Also, if anyone has any tips for cross
sectioning tissue I would be most appreciative.

Thank you,
Sara Blauman
American University
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 1 Nov 2011 19:31:29 -0500
Subject: [Microscopy] viaWWW:Zeiss Axioplan Service Company near Atlanta

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Email: yuhong.wu-at-solvay.com Name: Yuhong Wu

Organization: Solvay Advanced Polymers

Title-Subject: [Filtered] Zeiss Axioplan Service Company near Atlanta

Message: Dear All, we have an old Zeiss Axioplan, which is no longer serviced by Zeiss. We are
looking for a local service company that can do cleaning and repairs. Thanks a lot in advance!

Yuhong

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From: nizets2-at-yahoo.com
Date: Wed, 2 Nov 2011 09:51:46 -0500
Subject: [Microscopy] ePetri dish: your opinion?

Contents Retrieved from Microscopy Listserver Archives
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Dear colleagues,
 
I enjoy very much the present time, when engineering, physics and mathemics have come to a maturity which allows all kinds of new microscopy techniques to
be developed.
 
I came across an interesting article in PNAS:
http://www.pnas.org/content/early/2011/09/26/1110681108.full.pdf
 
I think it is interesting for life and material scientists.
As a biologist I don't understand all the technological intricacies of the method but I wonder if, given the simple material they used to get this kind of pictures, the resolution couldn't be further improved by using more sophisticated material (smaller CMOS pixel size for example?).
 
No personal interest, just an impressed reader ;-)

Stephane


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3, 37 -- From: Stephane Nizet {nizets2-at-yahoo.com}
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3, 37 -- Subject: ePetri dish: your opinion?
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From: frank_karl-at-ardl.com
Date: Thu, 3 Nov 2011 07:37:30 -0500
Subject: [Microscopy] ePetri dish: your opinion?

Contents Retrieved from Microscopy Listserver Archives
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At the risk of exposing my own ignorance let me ask the group: Doesn't the use of computer processing of several low resolution images to make a "new" high resolution images trouble you? Would not/could not a artifact be manipulated (un-intentionally) into something that sends the researcher down blind alleys? I suppose this question has been asked shortly after Fox invented photography and we wondered if it would replace camera lucida drawings.

My TEM camera is the pits, so I "smooth" the image. I can see the pixal change at the edge of the particles, but I'm just measuring the particle diameter and the size categories are big enough. But I would be very uncomfortable looking at structure followed by evaluation fine structure or image information on a highly processed image.

So, am I out in left field with my concerns?

stay safe..............................

Frank



-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Wednesday, November 02, 2011 10:01 AM
To: Frank Karl

Dear colleagues,

I enjoy very much the present time, when engineering, physics and mathemics have come to a maturity which allows all kinds of new microscopy techniques to
be developed.

I came across an interesting article in PNAS:
http://www.pnas.org/content/early/2011/09/26/1110681108.full.pdf

I think it is interesting for life and material scientists.
As a biologist I don't understand all the technological intricacies of the method but I wonder if, given the simple material they used to get this kind of pictures, the resolution couldn't be further improved by using more sophisticated material (smaller CMOS pixel size for example?).

No personal interest, just an impressed reader ;-)

Stephane


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 3 Nov 2011 08:12:37 -0500
Subject: [Microscopy] viaWWW:Schottky Emitter Gun Parameters

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Email: E.young-at-warwick.ac.uk

Name: Emily Young

Organization: University of Warwick

Title-Subject: [Filtered] Schottky Emitter

Message: Hello,

I'm an undergraduate student at the University of Warwick, and I am attempting to accurately
simulate a typical Schottky emitter used in modern SEMs. To do so, I really need to know at least a
general idea of the geometry involved, so I was hoping you could help me.

So far, I have a good idea of the emitter tip diameter, the suppressor cap aperture diameter, and
how far the tip protrudes from the supressor cap. What I still need to know is how thick the
supressor cap typically is, how far away the anode is from the emitter tip, and how thick said anode
is. All I need are general ballpark figures, for a very typical SEM arrangement. The hope is that I
will be able to simulate the emitter successfully enough that a visual guide to the trajectories of
the electrons through the microscope can be generated.

If you can offer any help, it would be greatly appreciated.

Many thanks,
Emily Young

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From: yodapesister-at-gmail.com
Date: Thu, 3 Nov 2011 14:32:56 -0500
Subject: [Microscopy] A question

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Hi everybody,
We have a Jeol 100S electron microscope and now the level of RP oil is
low. Anybody know if to refill is necessary that the microscope is
turn on or turn off?. Thanks in advance.
--
Dr. Armando Obregón Herrera
Departamento de Biología, Edificio I P.B.
División de Ciencias Naturales y Exactas
Universidad de Guanajuato, Campus Gto.
Tel. (473)7320006 Ext. 8127
Guanajuato, Gto. México.


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From: rcsencsits-at-lbl.gov
Date: Thu, 3 Nov 2011 14:48:40 -0500
Subject: [Microscopy] Re: A question-RP oil

Contents Retrieved from Microscopy Listserver Archives
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We top off our RP oil pumps while they are running. This should be not problem. The filler plug is at the top of the unit and you can just carefully pour oil in.


However--when was the last time you changed the oil? We replace our RP oil yearly. Shut down TEM and replace oil, you may want to replace the belt at that time, then power all backup.

Good luck.
Roseann

Roseann Csencsits, PhD
Scientist in Charge, Donner TEM Facility
Lawrence Berkeley Lab 01-365
1 Cyclotron Road
Berkeley, CA 94720
510-486-4548










On Nov 3, 2011, at 12:41 PM, yodapesister-at-gmail.com wrote:

}
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}
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} Hi everybody,
} We have a Jeol 100S electron microscope and now the level of RP oil is
} low. Anybody know if to refill is necessary that the microscope is
} turn on or turn off?. Thanks in advance.
} --
} Dr. Armando Obregón Herrera
} Departamento de Biología, Edificio I P.B.
} División de Ciencias Naturales y Exactas
} Universidad de Guanajuato, Campus Gto.
} Tel. (473)7320006 Ext. 8127
} Guanajuato, Gto. México.
}



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 3 Nov 2011 18:19:24 -0500
Subject: [Microscopy] viaWWW:4Pi detector for Tescan SEM

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Organization: NCR

Title-Subject: [Filtered] 4Pi detector for Tescan SEM

Message: Does anyone know of a service company for SEMs and Xray detectors in the southeast (around
Knoxville TN)?

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 4 Nov 2011 07:11:52 -0500
Subject: [Microscopy] viaWWW:TEM-protocols for skeletal and cardiac muscle tissues in silicone

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Email: Jjhill100-at-gmail.com

Name: Jennifer J. Hill

Organization: JJ Hill Photography

Title-Subject: [Filtered] TEM-protocols for skeletal and cardiac muscle tissues in silicone

Message: Hello All,

I am a scientific photographer from Florida trying to help a colleague with some TEM specimen
preparation of heart and skeletal muscle tissues. I am not a biologist by any means, but am hoping
for some expertise from others in this field. If anyone can point me in the right direction for a
methodology/protocol with recipes that has worked for him/her in the past, I would be most grateful.

I would like to add that my colleague has run an initial specimen preparation and he believes the
amount of softening to hardness agent ratios may have been off--causing the silicone to be more soft
than normal. He also is experiencing separation between the accelerator and silicone solution-is
there a better way for him to add the accelerator? Directly, after the dehydration step or combine
the silicone with the accelerator? Also, what is the maximum temperature in (C) in which these
tissues can be
cured?

Thank you all for any help you may provide.

Sincerely,
Jennifer J. Hill


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 4 Nov 2011 18:56:51 -0500
Subject: [Microscopy] viaWWW: Job Opening Pre-Sales Engineer in TEM (France)

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Email: smargiocchi-at-peoplexpert.fr

Name: Stéphane Margiocchi

Organization: PEOPLEXPERT

Title-Subject: [Filtered] Recruitment of a Pre-Sales Engineer in TEM

Message: Hi,



-----------------------------------------------------------
PRE-SALES ENGINEER / TRANSMISSION ELECTRON MICROSCOPY
CDI - Location: Yvelines (France) – Salary : according to profile and experience

PEOPLEXPERT (www.peoplexpert.fr) recruits for the French subsidiary (140 employees spread over
Europe) of a company leader in the design of electronic devices of observations and measurements in
high-tech (2000 employees ). Those devices are used in many industries, including research.
You are a support to the sales team during the visit of clients or prospects. Knowing the value of
our products (transmission electron microscopes), their characteristics relative to other tools and
what is possible to do with, you explain the specificities to your audience and adapt your speech to
their expectations and constraints. You also bring your expertise in our tendering answers. You will
travel all over the Europe and work all the time in an international context (Poland, Czech
Republic, Hungary, Italy, Greece ...).

With an education like Bachelor or Master degree, you have a solid understanding of the technical
environment of transmission electron microscopy, either through work experience (sales, design or
consulting) or through a thesis (or PhD) in which you had familiarized yourself with those tools
extensively. You need to speak English.

Thank you for applying with the following email address: smargiocchi-at-peoplexpert.fr under: AVI / BSM
-----------------------------------------------------------

Best Regards,

Stéphane Margiocchi
Directeur
PEOPLEXPERT
7 rue des Pommerots
78400 Chatou
Tel. 01 39 52 62 85
Port. 06 16 33 96 08
www.peoplexpert.fr



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Subject: [Microscopy] viaWWW:NESM 45th Annual Fall Symposium @ Gordon College, Dec. 1

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 6 Nov 2011 11:22:45 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:TEM - Need used TEM

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From: kenconverse-at-qualityimages.biz
Date: Sun, 6 Nov 2011 12:21:45 -0600
Subject: [Microscopy] ePetri dish: your opinion?

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Frank,
I haven't seen any comments, but is it so different from pixel, line or
frame averaging? I wasn't paying close attention to the details but what do
you think about all the manipulation that goes on to give electron or x-ray
tomography? I'm thinking that as long as what is being done is well
documented and reasonably well understood, it shouldn't present any more
problems than, for example, an SEM micrograph. I've always loved SEMs
because if you tell me what you want to see, I can probably show it to you,
but then we'd have to have a long talk about what is real, and that's
without any digital manipulation.

I agree that we need to be on the lookout for artifacts and being led
astray, but photography has served us well in spite of burning and dodging,
and digital photography seems to be doing OK, too, although more skepticism
is warranted.

Ken Converse
owner

QUALITY IMAGES
Servicing Scanning Electron Microscopes
Since 1981
474 So. Bridgton Rd.
Bridgton, ME 04009
207-647-4348
kenconverse-at-qualityimages.biz
qualityimages.biz


-----Original Message-----
X-from: frank_karl-at-ardl.com [mailto:frank_karl-at-ardl.com]
Sent: Thursday, November 03, 2011 8:42 AM
To: kenconverse-at-qualityimages.biz

At the risk of exposing my own ignorance let me ask the group: Doesn't the
use of computer processing of several low resolution images to make a "new"
high resolution images trouble you? Would not/could not a artifact be
manipulated (un-intentionally) into something that sends the researcher down
blind alleys? I suppose this question has been asked shortly after Fox
invented photography and we wondered if it would replace camera lucida
drawings.

My TEM camera is the pits, so I "smooth" the image. I can see the pixal
change at the edge of the particles, but I'm just measuring the particle
diameter and the size categories are big enough. But I would be very
uncomfortable looking at structure followed by evaluation fine structure or
image information on a highly processed image.

So, am I out in left field with my concerns?

stay safe..............................

Frank



-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Wednesday, November 02, 2011 10:01 AM
To: Frank Karl

Dear colleagues,

I enjoy very much the present time, when engineering, physics and mathemics
have come to a maturity which allows all kinds of new microscopy techniques
to
be developed.

I came across an interesting article in PNAS:
http://www.pnas.org/content/early/2011/09/26/1110681108.full.pdf

I think it is interesting for life and material scientists.
As a biologist I don't understand all the technological intricacies of the
method but I wonder if, given the simple material they used to get this kind
of pictures, the resolution couldn't be further improved by using more
sophisticated material (smaller CMOS pixel size for example?).

No personal interest, just an impressed reader ;-)

Stephane


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From: jacques.faerber-at-ipcms.u-strasbg.fr
Date: Tue, 8 Nov 2011 01:51:43 -0600
Subject: [Microscopy] Siemens Elmiscope 101 TEM looking for a home

Contents Retrieved from Microscopy Listserver Archives
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Email: henrik.kaker-at-guest.arnes.si Name: Henrik Kaker

Organization: SEM/EDS and XRD Lab, Metal Ravne

Title-Subject: [Filtered] Exporting INCA project file

Message: Dear All,

We have a file from one of our customer in the INCA project file format. We need a help to exporting
this data into TIFF files and Oxford spectrum files.

With best regards,

Henrik

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From vdgsnl-at-aol.nl Mon Nov 7 21:37:18 2011
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Reply-To: {tksuntangk-at-aol.com}

Hi all

Neighbor collegues here in Strasbourg have an Siemens Elmiscope 101,
dating from 1972 which is looking for a new home.
It has been working until 1999-2000, as far I know. The film chamber
(under the screen chamber) is missing.
It seems to me that it could be more usefull as a source of spares or as
an art piece (could be very nice in the entrance hall of a moderne
buiding ;-) ) than as a working instrument...

Of coarse it is free for who comes to get it. It must go away until the
end of the year.
If no one is interested, it will be scraped:'( . If someone needs a few
precise pieces, I can put them on side, when we'll dismantle it.

Hoping for a new home for it !

Jacques

--
Veuillez prendre note de la nouvelle adresse mail.

J. Faerber
IPCMS-DSI
Institut de Physique et Chimie des Matériaux de Strasbourg
Département Surfaces et Interfaces
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail Jacques.Faerber-at-ipcms.unistra.fr


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From: microscopylistserver-noreply-at-microscopy.com
Date: 1st November 2011
Subject: [Microscopy] viaWWW:Job Vacancy JEOL Applications Specialist UK

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Email: amy.stobart-at-jeoluk.com Name: Amy Stobart

Organization: JEOL (UK) Ltd

Title-Subject: [Filtered] JEOL Applications Specialist

Message: Job Vacancy
Applications Specialist - Electron Optics

Job Type: Full time
Location: Welwyn Garden City, UK

JEOL are a leading supplier of Scanning Electron Microscopes (SEMs), Transmission Electron
Microscopes (TEMs), Scanning Probe Microscopes (SPMs), Mass Spectrometers, NMR spectrometers, and
Semiconductor tools for scientific and industrial purposes. We provide applications-specific
solutions that advance our customers' diverse objectives — from routine analysis of organic and
inorganic specimens to breakthroughs in nanotechnological development.

We are looking to recruit an Applications Specialist for Electron Microscope and related
instruments. The key responsibilities will be,
1) Demonstrating the instruments for sales promotion

2) The analysis of samples which are received for the purposes of instrument evaluation

3) Supporting workshop events, exhibitions and training courses

The ideal applicant will have previous experience of SEM and TEM in an academic or industrial
setting (although complete training will be provided on all instrumentation). Good presentation
skills and the ability to communicate to people with a wide range of technical abilities are
essential. A bachelorÂ’s degree in a scientific discipline is a minimum requirement.
This position is based at our demonstration facility in Welwyn Garden City in the UK, however
regular travel within the UK and abroad will be required.
To apply, please send your C.V. with a cover letter to Amy Stobart (Applications by Email are
welcome. amy.stobart-at-jeoluk.com)



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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 8 Nov 2011 08:14:31 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: EMPA Au analyzing

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Email: yashasin-at-rocketmail.com Name: Kazem

Organization: IMPRC

Title-Subject: [Filtered] Au analyzing

Message: Hi all
Analyzing the Magnetite and pyrite with EPMA SX100 shows 1 to 1.5% Au in some points, is it natural
or may be wrong? also our condition is: 15Kv, 20 nA and beam size 3um. and in BSE pictures have not
been observed any visible gold.
How much is the high grade Au concentration in Magnetite and Pyrite?
there are some results:
Point Fe Co Ni Au Total
1 / 1 . 61.27 0.23 1.05 1.29 66.03
2 / 1 . 60.95 0.42 0.05 0.93 63.57
3 / 1 . 53.95 0 0 1.43 56.4

best regards
Kazem

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From: Christopher_Santeufemio-at-uml.edu
Date: Wed, 9 Nov 2011 08:50:13 -0600
Subject: [Microscopy] Obituary

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Subject; Obituary

Sheldon H. Moll, age 77, of Bedford, MA, passed away peacefully at Emerson Hospital on November 5, 2011 while surrounded by his family after a lengthy illness.

After earning his Ph.D. in Materials Science and Physics from MIT in 1959, he continued living in Massachusetts where he helped found, and was a Sr. VP for Amray, Inc. of Bedford, MA. After 40 years, Dr. Moll retired after the sale of the company. In his position he traveled the world where the company and he were well known throughout the Scanning Electron Microscopy field. Dr. Moll wrote over 120 publications and technical letters.


{http://bedfordfuneralhome.com/fh/obituaries/obituary.cfm?o_id=1304191&fh_id=10250}




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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 9 Nov 2011 19:38:31 -0600
Subject: [Microscopy] viaWWW:Carbonate-free NaOH

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Email: tbogea-at-mail.ubc.ca Name: Tami Bogea

Organization: University of British Columbia

Title-Subject: [Filtered] Carbonate-free NaOH

Message: Thanks to you all for your comments and suggestions regarding my ImmunoEM questions. One
brief one: apparently only EMS supplies a carbonate-free solution of sodium hydroxide. Does anyone
know how to obtain carbonate-free sodium hydroxide(in pellets)?

Thanks!!
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From: bludin-at-lis.ch
Date: Thu, 10 Nov 2011 07:59:26 -0600
Subject: [Microscopy] Hamamatsu Orca-R2 with OpenLab

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Has anybody here successfully used a Hamamatsu Orca-R2 with OpenLab software?

TIA,
Beat


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From: mary.raven-at-lifesci.ucsb.edu
Date: Thu, 10 Nov 2011 15:33:04 -0600
Subject: [Microscopy] LM - Limited space remaining in Jan 17-20 workshop in Santa Barbara, CA

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Dear Microscopy Managers and Directors
Please share with your light and fluorescence microscopy core facilities.


Advanced Microscopy and Digital Imaging Workshop

January 17-20, 2012


University of California, Santa Barbara

Offered by the Neuroscience Research Institute (NRI) and Department of
Molecular, Cellular, and Developmental Biology (MCDB).


See:
https://www.lifesci.ucsb.edu/mcdb/events/imaging_workshop/

--
Mary Raven
Microscopy Facility Director
Neuroscience Research Institute&
Molecular, Cellular& Developmental Biology
Biology 2 Building, room 5173
The University of California
Santa Barbara, CA 93106-5060

https://ucsb-microscopy.ucsd.edu/schedule/
http://www.lifesci.ucsb.edu/mcdb/research/facilities/microscopy/microscopy.html
Phone: (805) 893 8702
Fax: (805) 893 2005


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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 10 Nov 2011 18:45:50 -0600
Subject: [Microscopy] viaWWW:Need Cryo-TEM GATAN pump station for 1990 CM20 holder

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Email: martham-at-uci.edu Name: Martha Mecartney

Organization: UC Irvine

Title-Subject: [Filtered] Need Cryo-TEM GATAN pump station for 1990 CM20 holder

Message: Anyone have an older version of the GATAN cryo-TEM pumping station for a CM20
cryo-transfer holder from 1990? We are revitalizing our cryo-TEM with vitrified samples. The newer
models from GATAN do not have the right o-ring size or connectors, so if you have an old version for
trade or sale or know where we could find one, please let me know.

Martha Mecartney
Professor of Chemical Engineering and Materials Science
University of California
martham-at-uci.edu

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 10 Nov 2011 18:46:13 -0600
Subject: [Microscopy] viaWWW:carbonate-free NaOH

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Email: tbogea-at-mail.ubc.ca Name: Tami Bogea

Organization: University of British Columbia

Title-Subject: [Filtered] carbonate-free NaOH

Message: Thanks so much for your comments and suggestions regarding the carbonate-free NaOH. I'll
run a few tests next week and hopefully the problem will be solved.

Regards!

Tami

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 11 Nov 2011 07:45:39 -0600
Subject: [Microscopy] viaWWW:Broken Gatan Double Tilt Holder

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Email: z.zhou-at-lboro.ac.uk Name: Z Zhou

Organization: Loughborough University, UK

Title-Subject: [Filtered] Gatan Double Tilt Holder

Message: Dear Fellow TEM Microscopists,

We use a Gatan double tilt holder, there have been repeatedly a couple of accidents over the years
which a user managed to bend the front tip at where the specimen cradle is.

The front tip part appears to be aluminium, the sample cradle connects to the holder via two tiny
brass pins. Allowing the space for cradle and notch clearance for X-ray escape, the main holder part
is apparently very weak. The accident sees the rod tip being bended exactly at the weak points where
the two pins connect the cradle and serve as pivot points.

Unfortunately, none of my users owned up to it. We struggle to figure out the causes of the
accidents, so we donnot know what to improve to avoid it. We certainly do not want to repair again
and again for the same problem.

We would appreciate any ideas or advice on how this could happen, if we can repair this by
ourselves, and how to prevent it in the future.

Zhou

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From: raristau-at-ims.uconn.edu
Date: Fri, 11 Nov 2011 15:50:41 -0600
Subject: [Microscopy] Re: viaWWW:Broken Gatan Double Tilt Holder

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Being a user facility with more than 50 TEM users, I can sympathize with the
problem of broken double-tilt holders. We have had this occur several times
in the past.

One solution has been to fabricate a clamping mechanism that holds the 2-t
holder securely on the bench-top stand during the loading of sample. It is
most important to prevent any rocking/rotating of the holder during loading
as this produces stresses on the pivot pins, causing breakage.

The second important solution is to provide good support under the sample
cup during sample loading. Gatan and newer FEI stands typically have the
holder tip extending out into free space. We reverted to using the older
FEI/Philips stands that provide support for the holder tip. Since
introducing the these changes, we have had no breakage during the loading
step.

(I can offer no help for breakage due to heavy-handed or slippery fingered
users, other than suggesting my method of applying the "user alignment
tool"- a large wooden mallet.)

Cheers,
Roger


Roger A. Ristau, PhD
Electron Microscopy Specialist
Institute of Materials Science
97 North Eagleville Road
University of Connecticut
Storrs, CT 06269
vox: 860-486-5453
fax: 860-486-4745


} From: {microscopylistserver-noreply-at-microscopy.com}
} Reply-To: {microscopylistserver-noreply-at-microscopy.com}
} Date: Fri, 11 Nov 2011 07:50:47 -0600
} To: {raristau-at-ims.uconn.edu}
} Subject: [Microscopy] viaWWW:Broken Gatan Double Tilt Holder
}
}
}
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} please copy both
} z.zhou-at-lboro.ac.uk as well as the MIcroscopy Listserver
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}
} Email: z.zhou-at-lboro.ac.uk Name: Z Zhou
}
} Organization: Loughborough University, UK
}
} Title-Subject: [Filtered] Gatan Double Tilt Holder
}
} Message: Dear Fellow TEM Microscopists,
}
} We use a Gatan double tilt holder, there have been repeatedly a couple of
} accidents over the years
} which a user managed to bend the front tip at where the specimen cradle is.
}
} The front tip part appears to be aluminium, the sample cradle connects to the
} holder via two tiny
} brass pins. Allowing the space for cradle and notch clearance for X-ray
} escape, the main holder part
} is apparently very weak. The accident sees the rod tip being bended exactly at
} the weak points where
} the two pins connect the cradle and serve as pivot points.
}
} Unfortunately, none of my users owned up to it. We struggle to figure out the
} causes of the
} accidents, so we donnot know what to improve to avoid it. We certainly do not
} want to repair again
} and again for the same problem.
}
} We would appreciate any ideas or advice on how this could happen, if we can
} repair this by
} ourselves, and how to prevent it in the future.
}
} Zhou
}
} Login Host: 131.231.108.233
} ---------------------------------------------------------------------------
}
}
}
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} 2011
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10, 23 -- From raristau-at-ims.uconn.edu Fri Nov 11 15:50:40 2011
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From: rosemary.white-at-csiro.au
Date: Sat, 12 Nov 2011 03:32:14 -0600
Subject: [Microscopy] damage in general - was Broken Gatan Double Tilt Holder

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Sigh. The anonymous cack-handed klutz strikes again.

Someone recently mounted something large on our VP-SEM stage and rammed it
up into the BSE detector, producing a hairline crack across 2 quadrants.
It took us a while to figure out what was wrong, ramming something into
the detector was outside our thoughtspace. And of course, no-one owned
up, though we are pretty sure when it happened = who the culprit was
because we could see when image quality got really bad. Hard to believe
that a couple of users accepted this poor image quality without comment.

One way to try to track this down is to compel all users to comment on the
status of the instrument when they start their session. This is quite
good for figuring out who gets oil all over objectives, for example. For
serious damage, you end up paying for it no matter what, and we have
compelled all of our SEM users to be retrained, and set the stage stop way
down...

You could insist that all of your double tilt holder users be retrained,
and have a policy that they report on its status at the beginning of each
session and see if that helps. Even if you don't track down the
culprit(s), you might reduce the number of incidents.

good luck,

Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
E rosemary.white-at-csiro.au



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From: edelmare-at-muohio.edu
Date: Sun, 13 Nov 2011 12:05:17 -0600
Subject: [Microscopy] Canon EOS Camera in BX41/51 microscopes?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We experience EXACTLY the same thing. The only way of preventing it is to have a competent user
load the samples and insert the holder.
Fixing it yourself is very difficult, the tip typically needs replacing when it is bent like this. I
am wondering if it is not possible to fabricate the tip from titanium to increase its durability. I
suspect that that would increase the replacement cost considerably.
___

John Mansfield PhD Cphys MInstP
Microanalysis Society - President
Associate Director
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
Phone: (734) 936-3352 FAX (734) 763-2282 Cell. Phone: (734) 834-3913
(Leaving a phone message at 936-3352 is preferable to 834-3913)
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On Nov 11, 2011, at 8:56 AM, microscopylistserver-noreply-at-microscopy.com wrote:

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} Email: z.zhou-at-lboro.ac.uk Name: Z Zhou
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} Title-Subject: [Filtered] Gatan Double Tilt Holder
}
} Message: Dear Fellow TEM Microscopists,
}
} We use a Gatan double tilt holder, there have been repeatedly a couple of accidents over the years
} which a user managed to bend the front tip at where the specimen cradle is.
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} The front tip part appears to be aluminium, the sample cradle connects to the holder via two tiny
} brass pins. Allowing the space for cradle and notch clearance for X-ray escape, the main holder part
} is apparently very weak. The accident sees the rod tip being bended exactly at the weak points where
} the two pins connect the cradle and serve as pivot points.
}
} Unfortunately, none of my users owned up to it. We struggle to figure out the causes of the
} accidents, so we donnot know what to improve to avoid it. We certainly do not want to repair again
} and again for the same problem.
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} We would appreciate any ideas or advice on how this could happen, if we can repair this by
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} Zhou
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From swiss_nedloto-at-inmail24.com Sat Nov 12 20:40:07 2011
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Reply-To: {vaarnwmn-at-aol.com}

Dear listers,

I just want to ask if anyone of you had their BX41/51 microscopes in the lab fitted with Canon EOS cameras?
If yes, where did you get your adaptors? I have inquired with the Olympus local supplier but he told me that no such adaptor exist at their end. Of course, they would only cater to Olympus cameras but it's worth a try asking than leave me with "what if's".

Anyway, I did some google search and found these (see links below). However, before we spend $$$ on buying these items, I just want to inquire if this will actually work and which Canon EOS camera specifically would this fit into.

(http://webstore.diaginc.com/DD12BXT-1-2X-Coupler-p/wsn-dd12bxt.htm)
(http://webstore.diaginc.com/EOSC-T2-p/ws-eosc-t2.htm)

I would be very grateful for any information.

Thank you and best regards,

Melina Miralles
Lab Technician
The Petroleum Institute



==============================Original Headers==============================
9, 42 -- From mmiralles-at-pi.ac.ae Sun Nov 13 01:25:01 2011
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9, 42 -- From: Melina Miralles {mmiralles-at-pi.ac.ae}
9, 42 -- To: "microscopy-at-microscopy.com" {microscopy-at-microscopy.com}
9, 42 -- Subject: Canon EOS Camera in BX41/51 microscopes?
9, 42 -- Thread-Topic: Canon EOS Camera in BX41/51 microscopes?
9, 42 -- Thread-Index: Acyh1iCiLHOHk6MyQgGHqYjAh7oetA==
9, 42 -- Date: Sun, 13 Nov 2011 07:30:40 +0000
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From advhnsthissen-at-gmail.com Sun Nov 13 05:43:24 2011
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Reply-To: {advhnsthissen-at-aol.com}

Olympus says it has no adapters? Sounds like you asked the wrong question or the sales rep was on drugs. They have mounts for the Nikon F-mount. I know I have several. They used to have the Canon C-mount (the F-mounts will work in a pinch). What they do not have and do not exist are the mounts which make the scope "compu" compatible. Basically the scope become a fully manual lens. It will not auto-focus and it will not adjust the aperture (this should be a "Duh") Set to Aperture priority or manual and they work fine.





Richard E. Edelmann, Ph.D.
Center for Advanced Microscopy & Imaging, Director
Miami University
Oxford, OH 45056

Ph: 513.529.5712
www.cami.muohio.edu
________________________________________
X-from: mmiralles-at-pi.ac.ae [mmiralles-at-pi.ac.ae]
Sent: Sunday, November 13, 2011 2:25 AM
To: Edelmann, Richard E. Dr.

Dear listers,

I just want to ask if anyone of you had their BX41/51 microscopes in the lab fitted with Canon EOS cameras?
If yes, where did you get your adaptors? I have inquired with the Olympus local supplier but he told me that no such adaptor exist at their end. Of course, they would only cater to Olympus cameras but it's worth a try asking than leave me with "what if's".

Anyway, I did some google search and found these (see links below). However, before we spend $$$ on buying these items, I just want to inquire if this will actually work and which Canon EOS camera specifically would this fit into.

(http://webstore.diaginc.com/DD12BXT-1-2X-Coupler-p/wsn-dd12bxt.htm)
(http://webstore.diaginc.com/EOSC-T2-p/ws-eosc-t2.htm)

I would be very grateful for any information.

Thank you and best regards,

Melina Miralles
Lab Technician
The Petroleum Institute



==============================Original Headers==============================
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9, 42 -- To: "microscopy-at-microscopy.com" {microscopy-at-microscopy.com}
9, 42 -- Subject: Canon EOS Camera in BX41/51 microscopes?
9, 42 -- Thread-Topic: Canon EOS Camera in BX41/51 microscopes?
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==============================Original Headers==============================
19, 31 -- From edelmare-at-muohio.edu Sun Nov 13 12:05:16 2011
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From: edelmare-at-muohio.edu
Date: Sun, 13 Nov 2011 13:39:56 -0600
Subject: [Microscopy] Canon EOS Camera in BX41/51 microscopes?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



Apologies, the Canon lens mount is the is the Canon EF or EF-S mount not C-mount (the video camera standard).


Richard E. Edelmann, Ph.D.
Center for Advanced Microscopy & Imaging, Director
Miami University
Oxford, OH 45056

Ph: 513.529.5712
www.cami.muohio.edu
________________________________________
X-from: edelmare-at-muohio.edu [edelmare-at-muohio.edu]
Sent: Sunday, November 13, 2011 1:05 PM
To: Edelmann, Richard E. Dr.

Olympus says it has no adapters? Sounds like you asked the wrong question or the sales rep was on drugs. They have mounts for the Nikon F-mount. I know I have several. They used to have the Canon C-mount (the F-mounts will work in a pinch). What they do not have and do not exist are the mounts which make the scope "compu" compatible. Basically the scope become a fully manual lens. It will not auto-focus and it will not adjust the aperture (this should be a "Duh") Set to Aperture priority or manual and they work fine.





Richard E. Edelmann, Ph.D.
Center for Advanced Microscopy & Imaging, Director
Miami University
Oxford, OH 45056

Ph: 513.529.5712
www.cami.muohio.edu
________________________________________
X-from: mmiralles-at-pi.ac.ae [mmiralles-at-pi.ac.ae]
Sent: Sunday, November 13, 2011 2:25 AM
To: Edelmann, Richard E. Dr.

Dear listers,

I just want to ask if anyone of you had their BX41/51 microscopes in the lab fitted with Canon EOS cameras?
If yes, where did you get your adaptors? I have inquired with the Olympus local supplier but he told me that no such adaptor exist at their end. Of course, they would only cater to Olympus cameras but it's worth a try asking than leave me with "what if's".

Anyway, I did some google search and found these (see links below). However, before we spend $$$ on buying these items, I just want to inquire if this will actually work and which Canon EOS camera specifically would this fit into.

(http://webstore.diaginc.com/DD12BXT-1-2X-Coupler-p/wsn-dd12bxt.htm)
(http://webstore.diaginc.com/EOSC-T2-p/ws-eosc-t2.htm)

I would be very grateful for any information.

Thank you and best regards,

Melina Miralles
Lab Technician
The Petroleum Institute


==============================End of - Headers==============================


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25, 31 -- From edelmare-at-muohio.edu Sun Nov 13 13:39:56 2011
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25, 31 -- From: "Edelmann, Richard E. Dr." {edelmare-at-muohio.edu}
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25, 31 -- CC: "mmiralles-at-pi.ac.ae" {mmiralles-at-pi.ac.ae}
25, 31 -- Date: Sun, 13 Nov 2011 14:37:34 -0500
25, 31 -- Subject: RE: [Microscopy] Correction - Canon EOS Camera in BX41/51
25, 31 -- microscopes?
25, 31 -- Thread-Topic: [Microscopy] Correction - Canon EOS Camera in BX41/51
25, 31 -- microscopes?
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From: bernard-at-berkeleyrc.com
Date: Sun, 13 Nov 2011 14:14:38 -0600
Subject: [Microscopy] Fwd: RE: Canon EOS Camera in BX41/51 microscopes?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I use Canon cameras on all of my microscopes. For the AX70, which is
similar to the BX series, no optics are needed, just a tube that
mounts one to the other. The full visible image circle is recorded on
the camera, and then some. The flange-to-flange distance is roughly
60mm. I started with an empty Olympus tube of unknown purpose and
mounted an EF lens flange on the camera side. And since the tube was
too long anyway, I had a machinist cut it mid-length and thread one to
the other to make the parfocal adjustment. A few radial cuts in the
female section allows a hose clamp to lock it in the adjusted position
like a collet closer on a lathe. For camera control, I use DSLR Remote
Pro from Breeze Systems which displays the live view from the camera.
It all works like a charm.


} Dear listers,
}
} I just want to ask if anyone of you had their BX41/51 microscopes in the lab fitted with Canon EOS cameras?
} If yes, where did you get your adaptors? I have inquired with the Olympus local supplier but he told me that no such adaptor exist at their end. Of course, they would only cater to Olympus cameras but it's worth a try asking than leave me with "what if's".
}
} Anyway, I did some google search and found these (see links below). However, before we spend $$$ on buying these items, I just want to inquire if this will actually work and which Canon EOS camera specifically would this fit into.
}
} (http://webstore.diaginc.com/DD12BXT-1-2X-Coupler-p/wsn-dd12bxt.htm)
} (http://webstore.diaginc.com/EOSC-T2-p/ws-eosc-t2.htm)
}
} I would be very grateful for any information.
}
} Thank you and best regards,
}
} Melina Miralles
} Lab Technician
} The Petroleum Institute



--
Bernard R. Cuzzillo, Ph.D., P.E.
President, Mechanical Engineer, and Fire Scientist
Berkeley Research Company (BRC)
600 Addison Street
Berkeley, CA  94710-1920
USA

www.berkeleyrc.com

bernard-at-berkeleyrc.com

Cell phone: 510.821.2499
Office phone: 510.868.4333
Fax: 510.868.4351


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10, 31 -- Subject: Fwd: [Microscopy] RE: Canon EOS Camera in BX41/51 microscopes?
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 14 Nov 2011 08:16:24 -0600
Subject: [Microscopy] ] Re: viaWWW:Broken Gatan Double Tilt Holder

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Gatan do offer a titanium tip replacement for their double tilt holders. I
had to have this done to repair one of our specimen rods that had achieved
a rather impressive 25 degree bend at the pivot points. The main
contributing factors were using a specimen rod cradle that did not clamp
the rod and excessive muscle reflex when the rod started to tilt. I now
only use the Gatan clamping stand when changing specimens in their specimen
rod.

When I had the repair done about 10 years ago, the cost was ~$3500, which
was about $1000 more than the standard tip.


Philip L. Flaitz
IBM Microelectronics, Hopewell Junction, NY
Ph.......(845) 892-3094, FAX -6256
pager - 800-608-9398
flaitz-at-us.ibm.com




From: microscopylistserver-noreply-at-microscopy.com

To:
Philip Flaitz/Fishkill/IBM-at-IBMUS

Date: 11/13/2011 11:32 AM


Subject: [Filtered] [Microscopy] [Filtered] Re: viaWWW:Broken Gatan Double
Tilt Holder








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We experience EXACTLY the same thing. The only way of preventing it is to
have a competent user
load the samples and insert the holder.
Fixing it yourself is very difficult, the tip typically needs replacing
when it is bent like this. I
am wondering if it is not possible to fabricate the tip from titanium to
increase its durability. I
suspect that that would increase the replacement cost considerably.
___

John Mansfield PhD Cphys MInstP
Microanalysis Society - President
Associate Director
North Campus Electron Microbeam Analysis Laboratory
417 SRB, University of Michigan
2455 Hayward, Ann Arbor MI 48109-2143 USA
Phone: (734) 936-3352 FAX (734) 763-2282 Cell. Phone: (734) 834-3913
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On Nov 11, 2011, at 8:56 AM, microscopylistserver-noreply-at-microscopy.com
wrote:

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} Email: z.zhou-at-lboro.ac.uk Name: Z Zhou
}
} Organization: Loughborough University, UK
}
} Title-Subject: [Filtered] Gatan Double Tilt Holder
}
} Message: Dear Fellow TEM Microscopists,
}
} We use a Gatan double tilt holder, there have been repeatedly a couple of
accidents over the years
} which a user managed to bend the front tip at where the specimen cradle
is.
}
} The front tip part appears to be aluminium, the sample cradle connects to
the holder via two tiny
} brass pins. Allowing the space for cradle and notch clearance for X-ray
escape, the main holder part
} is apparently very weak. The accident sees the rod tip being bended
exactly at the weak points where
} the two pins connect the cradle and serve as pivot points.
}
} Unfortunately, none of my users owned up to it. We struggle to figure out
the causes of the
} accidents, so we donnot know what to improve to avoid it. We certainly do
not want to repair again
} and again for the same problem.
}
} We would appreciate any ideas or advice on how this could happen, if we
can repair this by
} ourselves, and how to prevent it in the future.
}
} Zhou
}
} Login Host: 131.231.108.233
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 14 Nov 2011 08:17:05 -0600
Subject: [Microscopy] viaWWW:Fixing water samples for posting

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
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Email: i.j.portman-at-warwick.ac.uk Name: Ian Portman

Organization: University of Warwick

Title-Subject: [Filtered] Fixing water samples for posting

Message: Hi
We're getting involved in some international projects with schools. Our basic plan is to get schools
to send us samples of pond water from their local area so we can image the microbial life (
particularly bacteriophage ) present. Our main hurdle is posting water samples that may well contain
some thoroughly unpleasant organisms between countries. The obvious answer is to fix the samples
before posting but most fixatives aren't the sort of thing you can stick in the post without a lot
of paperwork, nor are they the kind of thing school children should be handling.
Is there a fixative suitable so that we may post out a kit to a school, they can just add the pond
water and post it back without any headaches over hazardous goods shipping? We'd need about 5-10ml
of water. I'm wondering if something such as isopropanol might be ok - sent out by us at 40% and
sent back with pond water at 20% final conc.
Cheers
Ian



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From: oshel1pe-at-cmich.edu
Date: Mon, 14 Nov 2011 08:56:34 -0600
Subject: [Microscopy] Fwd: Ask-A-Microscopist Microscopy 5 axis manipulators

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This is something for the community - please respond to Friedlander
at tfriedlander-at-fmpharma.com .
Not to me or by using "reply".
Phil

} Date: Fri, 11 Nov 2011 14:36:07 -0800
} Reply-To: Thomas Friedlander {tfriedlander-at-fmpharma.com}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
} Below is the result of your form, submitted on Friday, November 11,
} 2011 at 02:36:05 PM.
}
} realname - Thomas Friedlander
} Email - tfriedlander-at-fmpharma.com
} ORGANIZATION - FMP
} EDUCATION - Graduate College
} LOCATION - Danbury, CT, USA
} SUBJECT_OF_QUESTION - Micro manipulators
} QUESTION - Hi,
}
} I have been working on developing an automated microscope platform
} (joy stick controlled) with two 5 axis micro-manipulators for
} manipulating samples for something called DAC loading (diamond anvil
} cell). This technique is used to load samples in a device which can
} be put under great pressure to study the molecular lattice within
} the sample. Typically the samples are between 5 to 100 microns. They
} are typically crystalline (rubies are about 5 microns for this type
} of experiment).
}
} My question is "What other applications could an automated
} microscope platform with dual joy stick controlled 5 axis
} manipulators be good for?"
}
--
***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 14 Nov 2011 20:05:12 -0600
Subject: [Microscopy] [Filtered] Re: ] Re: viaWWW:Broken Gatan Double Tilt

Contents Retrieved from Microscopy Listserver Archives
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Hello Everyone,
I want to thank everyone for their advice and e-mails about repair of my glass knife maker. I have the options and now it's up to management. Thanks!!!
Frank

Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



________________________________
This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.


==============================Original Headers==============================
6, 25 -- From frank_karl-at-ardl.com Mon Nov 14 09:34:53 2011
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From johnnarzika-at-hotmail.com Mon Nov 14 11:35:16 2011
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Mon, 14 Nov 2011 06:36:15 -0500
Reply-To: {obicollins-at-yahoo.cn}

Regarding "how to prevent this in the future", another option that I've seen work is to require all
users of your double-tilt holder to "requalify" on its use. Basically that would mean the next time
they sign up for instrument time and plan on using the holder, they need to be observed by you.
While some users will be on their best behavior and mask holder-breaking practices, many times this
exercise serves to demonstrate what users are doing right, and also what they're doing wrong, and
can sometimes expose the practices which cause the breakage to begin with. This is not the same as
retraining everyone, since retraining is interactive and can mask the problems, which simple
observation/"requalification" has the opportunity to expose more issues. Just a thought that might
help.


*****************
John M. Papalia, Ph.D.
EM Career Seeker
jpapalia-at-papalia.net
*****************


On 11/14/2011 9:34 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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}
} Gatan do offer a titanium tip replacement for their double tilt holders. I
} had to have this done to repair one of our specimen rods that had achieved
} a rather impressive 25 degree bend at the pivot points. The main
} contributing factors were using a specimen rod cradle that did not clamp
} the rod and excessive muscle reflex when the rod started to tilt. I now
} only use the Gatan clamping stand when changing specimens in their specimen
} rod.
}
} When I had the repair done about 10 years ago, the cost was ~$3500, which
} was about $1000 more than the standard tip.
}
}
} Philip L. Flaitz
} IBM Microelectronics, Hopewell Junction, NY
} Ph.......(845) 892-3094, FAX -6256
} pager - 800-608-9398
} flaitz-at-us.ibm.com
}
}
}
}
} From: microscopylistserver-noreply-at-microscopy.com
}
} To:
} Philip Flaitz/Fishkill/IBM-at-IBMUS
}
} Date: 11/13/2011 11:32 AM
}
}
} Subject: [Filtered] [Microscopy] [Filtered] Re: viaWWW:Broken Gatan Double
} Tilt Holder
}
}
}
}
}
}
}
}
} ----------------------------------------------------------------------------
}
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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}
}
} We experience EXACTLY the same thing. The only way of preventing it is to
} have a competent user
} load the samples and insert the holder.
} Fixing it yourself is very difficult, the tip typically needs replacing
} when it is bent like this. I
} am wondering if it is not possible to fabricate the tip from titanium to
} increase its durability. I
} suspect that that would increase the replacement cost considerably.
} ___
}
} John Mansfield PhD Cphys MInstP
} Microanalysis Society - President
} Associate Director
} North Campus Electron Microbeam Analysis Laboratory
} 417 SRB, University of Michigan
} 2455 Hayward, Ann Arbor MI 48109-2143 USA
} Phone: (734) 936-3352 FAX (734) 763-2282 Cell. Phone: (734) 834-3913
} (Leaving a phone message at 936-3352 is preferable to 834-3913)
} Email: jfmjfm-at-engin.umich.edu
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} 48" (-83 ° 45.7980')
}
} Please note: Electronic Mail is not secure, but should be read several
} times every day, and should
} definitely be used for urgent or sensitive issues.
}
} On Nov 11, 2011, at 8:56 AM, microscopylistserver-noreply-at-microscopy.com
} wrote:
}
}
} }
} }
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} } This Question/Comment was submitted to the Microscopy Listserver
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} }
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} } z.zhou-at-lboro.ac.uk as well as the MIcroscopy Listserver
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} ---------------------------------------------------------------------------
}
} } Email: z.zhou-at-lboro.ac.uk Name: Z Zhou
} }
} } Organization: Loughborough University, UK
} }
} } Title-Subject: [Filtered] Gatan Double Tilt Holder
} }
} } Message: Dear Fellow TEM Microscopists,
} }
} } We use a Gatan double tilt holder, there have been repeatedly a couple of
} }
} accidents over the years
}
} } which a user managed to bend the front tip at where the specimen cradle
} }
} is.
}
} } The front tip part appears to be aluminium, the sample cradle connects to
} }
} the holder via two tiny
}
} } brass pins. Allowing the space for cradle and notch clearance for X-ray
} }
} escape, the main holder part
}
} } is apparently very weak. The accident sees the rod tip being bended
} }
} exactly at the weak points where
}
} } the two pins connect the cradle and serve as pivot points.
} }
} } Unfortunately, none of my users owned up to it. We struggle to figure out
} }
} the causes of the
}
} } accidents, so we donnot know what to improve to avoid it. We certainly do
} }
} not want to repair again
}
} } and again for the same problem.
} }
} } We would appreciate any ideas or advice on how this could happen, if we
} }
} can repair this by
}
} } ourselves, and how to prevent it in the future.
} }
} } Zhou
} }
} } Login Host: 131.231.108.233
} }
} }
} ---------------------------------------------------------------------------
}
} }
} }
} } ==============================Original
} }
} Headers==============================
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} 06:50:47 2011
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} Tilt Holder
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From: mmiralles-at-pi.ac.ae
Date: Tue, 15 Nov 2011 03:21:28 -0600
Subject: [Microscopy] Canon EOS Camera in BX41/51 microscopes?

Contents Retrieved from Microscopy Listserver Archives
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Dear all,

Thank you for all the replies that you have sent me. I will look into these adaptor providers and check.
I understand about the installation of cameras in the trinocular mount (which we also need), however I would like to confirm if anyone of you has a setup wherein the camera is attached via the eyepieces.

Thanks again!


Dr. Edelman,

That is the answer that I got from Olympus guy. He said they have adaptors that would only fit Olympus cameras. He suggested me to ask Canon if they (Canon or any other brand of SLR camera) could provide adaptors that will fit into Olympus microscopes instead. But on their side, they are reluctant to entertain our idea of having another camera brand on the scopes. And I sincerely hope, he was not on drugs!


Melina Miralles
Lab Technician
The Petroleum Institute




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From: jmircheski-at-us.es
Date: Tue, 15 Nov 2011 05:51:10 -0600
Subject: [Microscopy] Nanoparticles enhancement for immuno EM

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Hi all,

Recently we started to prepare cross-section SEM samples. We are using an old Buehler Ecomet III grinder.

I'm now looking for a modern precision lapping/polishing machine for SEM.

X-from a former workplace I know the Allied MultiPrep, which I think was wonderful.



Would such a machine be an overshoot for normal SEM preparation?

What other options are there on the market?

Manufacturers are invited to respond off-list.


I'm aware that a very similar question was asked last year. But then it was for TEM (see below).


Thanks in advance,

Bettina




-----------------------


Dear Listers,

A colleague of mine is trying to use immuno EM with NANOGOLD particles, but
at the magnification that she needs, the 5 (or 10 nm) gold particles cannot
be seen clearly. Could someone suggest a protocol (homemade better) for gold
particles enhancement? (A protocol that uses silver, nickel or anything
else). There are some kits already available, but she would prefer using her
own reagents.

Thanks to all,

Best,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es




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From: peter.heimann-at-uni-bielefeld.de
Date: Tue, 15 Nov 2011 06:21:35 -0600
Subject: [Microscopy] Re: Nanoparticles enhancement for immuno EM

Contents Retrieved from Microscopy Listserver Archives
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though commerciable enhancers (e.g. from AURION) work very good, the
best (= most sensitive) enhancement still can be achieved (at least in
my hands) by the good, old home-made Danscher silver-intensification
( Light microscopic visualization of colloidal gold on resin-embedded
tissue. Danscher G, Nörgaard JO.; J Histochem Cytochem. 1983
Dec;31(12):1394-8 )

in my hands 0.8 - 1.0 nm Au is enhanced in a 2-step intensification (6
minutes and 8 minutes); Quantum Dots ( 4-5 minutes and 5 - 7 minutes)
all at 37° Celsius

for larger particles 7 plus 11 minutes could be applicable, but
unspecific background will rise too

good luck,
Peter Heimann
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

jmircheski-at-us.es:
}
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} Dear Listers,
}
} A colleague of mine is trying to use immuno EM with NANOGOLD particles, but
} at the magnification that she needs, the 5 (or 10 nm) gold particles cannot
} be seen clearly. Could someone suggest a protocol (homemade better) for gold
} particles enhancement? (A protocol that uses silver, nickel or anything
} else). There are some kits already available, but she would prefer using her
} own reagents.
}
} Thanks to all,
}
} Best,
}
} Josif
}
} Dr. Josif Mircheski
} ____________________________________________________________________________
} ___
} Instituto de Biomedicina de Sevilla (IBIS), Lab 108
} Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
} Avda. Manuel Siurot S/Nº
} 41013 Sevilla
} Spain
}
} Phone:+34-955923045
} e-mail: jmircheski-at-us.es
} web: www.ibis-sevilla.es
}
}
}
}
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--
====================================================

Dr. Peter Heimann Raum: W7-107 / Tel.: +49-(0)521-106-5628
Universitaet Bielefeld Fax: +49-(0)521-106-5654
"Zellbiologie / Cell Biology" W7-107
33501 Bielefeld, Germany www.uni-bielefeld.de/biologie/cellbio



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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 15 Nov 2011 07:17:58 -0600
Subject: [Microscopy] viaWWW:TEM Gatan DT Stage Damage

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Email: eoptics-at-mcmaster.ca Name: Fred Pearson

Organization: McMaster University

Title-Subject: [Filtered] TEM Gatan DT Stage Damage
Message: Hi
I have the same DT Gatan Stage since 1990........we have had repairs to it many times over the years.
} From your description and my experience with this your email suggests that the user pulled the
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From: PhillipsT-at-missouri.edu
Date: Tue, 15 Nov 2011 07:36:58 -0600
Subject: [Microscopy] Nanoparticles enhancement for immuno EM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I am a big fan of do it yourself in regards to things like this but would go with the kit approach in this situation. I am a big fan of the Nanoprobes gold (not silver) enhancement kit. It is much easier and more reproducible than the silver enhancement kits or "homebrew" approaches I used in the dark ages. Good luck. Tom

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


-----Original Message-----
X-from: jmircheski-at-us.es [mailto:jmircheski-at-us.es]
Sent: Tuesday, November 15, 2011 5:52 AM
To: Phillips, Thomas E.

Dear Listers,

A colleague of mine is trying to use immuno EM with NANOGOLD particles, but
at the magnification that she needs, the 5 (or 10 nm) gold particles cannot
be seen clearly. Could someone suggest a protocol (homemade better) for gold
particles enhancement? (A protocol that uses silver, nickel or anything
else). There are some kits already available, but she would prefer using her
own reagents.

Thanks to all,

Best,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es




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From: vcasco-at-bioingenieria.edu.ar
Date: Tue, 15 Nov 2011 11:36:03 -0600
Subject: [Microscopy] Fwd: filament for SEM

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Having polished welds in steel and aluminum, solder joints not to mention stainless steel and other metals for SEM and LM, I recommend Struers. They may be a little more expensive, but they have extensive experience and a staff of smart, interested people who will help you find or develop the best sample prep. The equipment is top notch.

Their website is www.struers.com. Here in the Cleveland area of the US Katie Myers is your best bet. You'll find them overseas as well.
Note, I don't work for them, own stock in the company or even polish metals anymore, but as far as I'm concerned they are the go to people.

Frank

-----Original Message-----
X-from: wolpensinger-at-isfh.de [mailto:wolpensinger-at-isfh.de]
Sent: Tuesday, November 15, 2011 6:38 AM
To: Frank Karl

Hi all,

Recently we started to prepare cross-section SEM samples. We are using an old Buehler Ecomet III grinder.

I'm now looking for a modern precision lapping/polishing machine for SEM.

X-from a former workplace I know the Allied MultiPrep, which I think was wonderful.



Would such a machine be an overshoot for normal SEM preparation?

What other options are there on the market?

Manufacturers are invited to respond off-list.


I'm aware that a very similar question was asked last year. But then it was for TEM (see below).


Thanks in advance,

Bettina




-----------------------


Hi every body,

We have a very old SEM Hitachi HHS-2R which is working fine but, we
can not find filaments in Argentina.

 Can anyone tell me where can a get some boxes?

 Manufacturers are invited to respond off-list.
Thanks in advance,

 Victor.

--
________________________________
Víctor Hugo Casco
Prof. Titular Biología Molecular y Celular
Facultad de Ingeniería (Bioingenieria - Bioinformática)
Universidad Nacional de Entre Ríos
Tel.: (0343) 497-5100/101 (int 120) FAX: (0343) 497-5100/101 (int 108)
Skype: victor_casco
C-electrónico: vcasco-at-bioingenieria.edu.ar
www.bioingenieria.edu.ar
___________________________________________


Este correo y cualquier archivo anexo son confidenciales y para uso
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 16 Nov 2011 19:52:16 -0600
Subject: [Microscopy] viaWWW:Job open now: Senior Development Engineer, Materials Characterization

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Email: jzheng-at-uci.edu Name: Jian-Guo Zheng

Organization: University of California, Irvine

Title-Subject: [Filtered] Job open now: Senior Development Engineer, Materials Characterization
Facility, University of California, Irvine

Message: Senior Development Engineer, Materials Characterization Facility, University of California,
Irvine

Work with the Director to manage the day-to-day operations of UC IrvineÂ’s Materials Characterization
Facility, the central campus user facility for electron microscopy, X-ray scattering, scanning
probe, and soft materials characterization instrumentation. Located in the new Calit2 Building and
the Engineering Tower, the Facility assists over one hundred student users, over 40 faculty, and
many outside academic users and corporations in carrying out cutting-edge research in chemistry,
materials science, physics, engineering, biology, and medicine. The successful applicant must be an
XRD expert and will have direct responsibility for at least three XRDs, one scanning electron
microscope, and auxiliary equipment. Duties include: serve as lead campus expert on X-ray and
scanning electron microscopy analytical techniques; train, supervise, and work directly with users
to carry out research; maintain all Facility equipment at peak levels of performance; co-manage all
aspects of day-to-day Facility operations; assist in improving and upgrading existing instruments
and acquiring new instruments; participate in teaching and outreach activities; promote the Facility
on and off campus; perform original research, publish scientific research in peer-reviewed journals,
and attend scientific conferences.

For more information and to apply (by January 1, 2012; job# 2011-0720), visit:
https://staffing2.hr.uci.edu/CSS_External/CSSPage_Welcome.asp

The Materials Characterization Facility website is http://lexi.eng.uci.edu/

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 17 Nov 2011 22:02:51 -0600
Subject: [Microscopy] viaWWW:Electron Microscopist Position Available

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Email: kuryu-at-rockefeller.edu Name: Kunihiro Uryu

Organization: The Rockefeller University

Title-Subject: [Filtered] Electron Microscopist Position Available

Message: Electron Microscopist, The Rockefeller University, NY, NY
The Rockefeller University, a premier biomedical research institution, seeks a Research Support
Specialist to join our Electron Microscopy Resource Center (EMRC).

The EMRC provides state of the art electron microscopy support for analysis of a wide variety of
biological samples, including virus, bacteria, insects, animal tissue as well as cultured cell and
isolated cellular components for structural analyses or immuno-electron microscopy. The EMRC is
equipped with two TEMs and one SEM as well as a high pressure freezing and a free substitution unit.
(http://www.rockefeller.edu/emrc/)

The Research Support Specialist will participate in all of the EMRCÂ’s daily operations, including
bench work in preparation for transmission and scanning electron microscopy, and maintenance of the
center. He/she will be responsible for all parts of sample preparation, maintenance, and operation
of EM and other equipment, training users, consulting with scientists on design of experiments and
interpretation of results, ordering and receiving supplies, managing chemical waste compliance,
administrative support for office duties and center billing, and keeping up with the latest
methodology via familiarity with the literature.
Master's degree in biology, cell biology, bioengineering or a related field required; Ph.D.
preferred. Must have a minimum of 5 years of experience in electron microscopy and have strong
communication skills, and the ability to work collaboratively on a team as well as independently on
a wide variety of research projects. Must be detail-oriented, focused, and highly motivated.

Our culture
*inspiring, collaborative atmosphere
*strong social and environmental consciousness
*intellectually curious academic environment
*14-acre campus setting in NYC

We offer a competitive salary, comprehensive benefits, and a beautiful work environment.
To apply to this job, click the following URL, click on 'staff opportunitiesÂ’ and enter keyword
‘IRC11162’: http://www.rockefeller.edu/hr/career.php

The Rockefeller University is an Affirmative Action/Equal Employment Opportunity/VEVRAA employer.

Kunihiro Uryu, Ph.D., Director of Electron Microscopy Resource Center

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 19 Nov 2011 07:51:38 -0600
Subject: [Microscopy] viaWWW: 3D reconstruction of multiple fluorescently labelled sections

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Email: emma.king-at-nottingham.ac.uk Name: Emma King

Organization: University of Nottingham, UK

Title-Subject: [Filtered] 3D reconstruction of multiple fluorescently labelled sections

Message: We would like to take serial sections (20 microns thick) of rat spinal cord (up to 1cm
long), label them with a bright and specific fluorescent label, acquire images (we can use either a
widefield or confocal microscope) and then reconstruct the data in to one, 3D structure.

We have the sectioning, staining and acquisition parameters/options under control, but don't have
any software capable of reconstructing the resultant images. Does anyone have any suggestions as to
what software to use and where to get it from?

Any help much appreciated.

Cheers,
Emma

Advanced Microscopy Unit
School of Biomedical Sciences
Univeristy of NOttingham

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 19 Nov 2011 07:52:29 -0600
Subject: [Microscopy] viaWWW:TEM Specialist position open

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Email: ressl006-at-umn.edu Name: Alice Ressler

Organization: University of Minnesota Characterization Facility

Title-Subject: [Filtered] TEM Specialist position open

Message: The University of Minnesota is seeking an experienced transmission electron microscopist
for a position in the College of Science and Engineering Characterization Facility (CharFac), which
houses a variety of transmission and scanning electron microscopes, in addition to other advanced
materials and biological characterization instruments.
The applicant should possess expertise in routine TEM maintenance, high-resolution TEM imaging,
analytical (S)TEM with EELS and EDX spectroscopy, specimen preparation, and interpretation of
results from TEM images, analyses, and diffraction patterns. The successful candidate must be able
to multi-task on a variety of TEM-related activities, both independently and in collaboration with
disparate “users” ranging from those seeking the services of an expert microscopist (i.e., clients,
usually with minimal TEM understanding) to those seeking training to become independent (and some
cases advanced) microscopists.
The job includes a substantial teaching component as the CharFac has a long history of training
students, post docs, and industrialists to use state-of-the-art materials characterization
instrumentation. A Ph.D. or M.S. in materials science, physics, geology, chemistry, chemical
engineering, or similar science or engineering discipline is required. A minimum of five years TEM
experience for the characterization of solid-state materials is required.
In addition to the technical criteria for a professional microscopist, the following attributes
are particularly sought:
1. Ability to interface well with industrial personnel, including training, analytical service
and research collaboration.
2. Strong interest in (a) hands-on laboratory work; (b) detailed data analysis; and (c) authoring
of client reports, application notes and user training materials (i.e., in addition to journal
publications). 3. Interest and aptitude for developing new analytical methodologies as well as IT
systems within a technical context (e.g., custom data analysis algorithms).
4. Some experience with aberration-corrected (S)TEMs. Please submit a letter of interest and
curriculum vita to:
Joel Overlander {charfac-at-umn.edu} and please address your letter as follows:
TEM Specialist Search Committee
12 Shepherd Labs
Characterization Facility, University of Minnesota 100 Union St. SE
Minneapolis, MN 55455

Or you may apply online via the following link: University of Minnesota TEM Position


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 19 Nov 2011 16:42:28 -0600
Subject: [Microscopy] viaWWW:Fixation of liposomes

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Email: thomas.burrage-at-hq.dhs.gov Name: Thomas Burrage

Organization: Plum Island Animal Disease Center

Title-Subject: [Filtered] Fixation of liposomes
Message: Microscopists,

Can anyone suggest a good protocol for fixing and preserving anionic liposomes for thin section
analysis. There were some good liposome studies in the 80's with osmium and tannic acid but I can't
get the original papers.

Thanks for your input,
Best regards,

Tom Burrage
Plum Island Animal Disease Center
Greenport, New York 11944-0848
e-mail thomas.burrage-at-hq.dhs.gov
lab phone 631 323-3277

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From: ben.micklem-at-pharm.ox.ac.uk
Date: Mon, 21 Nov 2011 07:52:06 -0600
Subject: [Microscopy] Re: viaWWW: 3D reconstruction of multiple

Contents Retrieved from Microscopy Listserver Archives
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Dear Emma,

I have no experience of doing something like this with so many sections
(5,000) in fluorescence. The problems are likely to be the same as those
faced by people using EM to reconstruct large (relatively speaking)
volumes in 3D- namely alignment of the images and distortion caused during
sectioning and mounting.

I don't know what sort of resolution you need, nor how to solve how the
labelling would be done, but would some form of imaging directly from the
tissue block before sections are removed (or milled) be possible? The
equivalent is done with block-face scanning EM to solve the same problems.

Something along the lines of:
http://onlinelibrary.wiley.com/doi/10.1002/jemt.20491/pdf

Or you could find a way of capturing and mounting the sections all at the
same angle without introducing much distortion. Or you can use software to
overcome these.

http://onlinelibrary.wiley.com/doi/10.1002/jemt.20829/pdf



Although the following page is a bit old, it may have some useful links:

http://www.wadsworth.org/spider_doc/sterecon/ssrecn.html


Good luck,


Ben


--
Research Support Manager
MRC Anatomical Neuropharmacology Unit, Mansfield Road,
Oxford, OX1 3TH, United Kingdom. Telephone: 01865 271649
{http://mrcanu.pharm.ox.ac.uk/}




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23, 32 -- Subject: Re: [Microscopy] viaWWW: 3D reconstruction of multiple
23, 32 -- fluorescently labelled sections
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From: larry.ackerman-at-ucsf.edu
Date: Mon, 21 Nov 2011 11:43:41 -0600
Subject: [Microscopy] Re: viaWWW: 3D reconstruction of multiple

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Hi Emma,
This sounds like a great project! First I strongly recommend that you
use a confocal with settings for a small optical section in order to
give you enough data for reasonable Z-resolution in your final
reconstruction. I typically used 0.5 micrometer steps with a 63X and
should have used 0.2 or 0.3. The software I have used most is Imaris
from Bitplane. It is robust with useful features for neuro studies and
they have good support. The cost is high with all similar software. If
you try to use open source software you will spend many hours and days
getting it all working for your application.

Best wishes,
Larry

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} Email: emma.king-at-nottingham.ac.uk Name: Emma King
}
} Organization: University of Nottingham, UK
}
} Title-Subject: [Filtered] 3D reconstruction of multiple fluorescently labelled sections
}
} Message: We would like to take serial sections (20 microns thick) of rat spinal cord (up to 1cm
} long), label them with a bright and specific fluorescent label, acquire images (we can use either a
} widefield or confocal microscope) and then reconstruct the data in to one, 3D structure.
}
} We have the sectioning, staining and acquisition parameters/options under control, but don't have
} any software capable of reconstructing the resultant images. Does anyone have any suggestions as to
} what software to use and where to get it from?
}
} Any help much appreciated.
}
} Cheers,
} Emma
}
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--
Larry Ackerman, Specialist
Electron Microscopy Lab
Manager, Diabetes& Endocrinology Research Center Microscopy Core
UCSF, Dept. of Anatomy, Rm S657
513 Parnassus Ave., Box 0452
San Francisco, CA 94143

larry.ackerman-at-ucsf.edu

415-999-4758



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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 21 Nov 2011 17:19:32 -0600
Subject: [Microscopy] viaWWW:lanthanum nitrate in sym-collidine with osmium method issues

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Email: bkaugust-at-wisc.edu Name: Ben August

Organization: University of Wisconsin

Title-Subject: [Filtered] lanthanum nitrate in sym-collidine with osmium method issues

Message: Greetings, IÂ’m attempting to follow a protocol that utilizes lanthanum nitrate in a mixture
of 1% osmium in a 0.2M sym-collidine buffer. The final lanthanum concentration is 0.2M.
To make this mixture, I first made a 2X stock solution of sym-collidine (purchased from EMS) and
mixed according to their instructions where the sym-collidine is added along with an aliquot of
2.0N. HCL for the desired pH of 7.75. For a 200 ml sym-collidine kit, I made 100ml at 2x (5.34ml
sym-collidine from kit, 5.0ml 2.0N HCL in 89.66 ml dH20).
To make the final concentrations of the mixture (for 10ml) I added 5ml of the stock sym-collidine,
0.866 grams of lanthanum nitrate and 5ml of 0.2% aqueous osmium. When I add all the components
together, it has a slightly yellow milky appearance. After mixing, the liquid becomes somewhat
clear, but there is still a precipitate that settles at the bottom of the glass container.
Phosphate buffered glutaraldehyde fixed samples were incubated in this mixture for two hours (after
carful rinsing in phosphate buffer followed by 1X collidine buffer after primary fixation). After
incubation, the samples were routinely processed for TEM (dehydrated in EtOH, propylene oxide and
finally embedded in Epon 812 substitute). If prepared properly, the samples should have a layer of
electron dense lanthanum nitrate crystals accumulated on the outside or surfaces of the samples and
between come of the cells. Mine do not so I suspect that I am doing something wrong. Can someone
that has used this mixture successfully please give me some advice? Thanks in advance,
Ben August
University of Wisconsin – Electron Microscope Facility.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 21 Nov 2011 17:20:10 -0600
Subject: [Microscopy] viaWWW:3D reconstruction of multiple tissue sections-Thanks

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Email: emma.king-at-nottingham.ac.uk Name: Emma King

Title-Subject: [Filtered] 3D reconstruction of multiple tissue sections

Message: Thank you everyone for your suggestions. There's lots to work with... wish us luck!

Cheers,
Em

Dr Emma King
Advanced Microscopy Unit Lead
School of Biomedical Sciences


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From: W.Muss-at-salk.at
Date: Tue, 22 Nov 2011 03:00:48 -0600
Subject: [Microscopy] Re: Lanthanum nitrate in sym-collidine with osmium method issues

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Good morning,
Dear Ben,
very interesting issue: Owing to its relative high electron density and granular aspect La is well visualized and has been used as an ultrastructural tracer (e.g. Roels F, Espeel M, Poggi F et al. Human liver pathology in peroxisomal diseases: a review including novel data. Biochimie 1993; 75: 281-292).

Would you please comment or inform us / me of the original recipe /La-method you have considered to follow ["...attempting to follow a protocol..." ] ?
There are some specific (unspecific?) methods for precipitation of material (e.g. Calcium, CaBP's, Glycocalyx, etc) using Lanthanum
[Also, interestingly, Lanthanum is used as a trapping agent in Hyperphosphataemia].
I have done some projects with tissue fixed with La+++ added and I know that this might be a little bit tricky [first of all I'm thinking of the lanthanum stuff wasn't {reactive} any more in the "mixed fix"-solution],
so to comment: - first of all I would like to follow the steps of our scientific predecessors [cf. REVEL, J. P. & KARNOVSKY, M. J. (1967) Hexagonal array of subunits in intercellular junctions of the mouse heart and liver. Cell Biol. 33, C7-C12, a method which in my experience "functions" well] in terms of their used method.

Best regards,

Wolfgang MUSS, PhD
EM-Lab
Univ.Inst.Pathology
SALK-LKH (Gen. Hosp.)
SALZBURG, AUSTRIA




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} Gesendet: Dienstag, 22. November 2011 00:23
} An: Muß Wolfgang
} Betreff: [Microscopy] Lanthanum nitrate in sym-collidine with osmium
} method issues
}
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} Email: bkaugust-at-wisc.edu
} Name: Ben August
} Organization: University of Wisconsin
} Title-Subject: lanthanum nitrate in sym-collidine
} with osmium method issues
} Message:
}
} Greetings, I'm attempting to follow a protocol that utilizes lanthanum
} nitrate in a mixture of 1% osmium in a 0.2M sym-collidine buffer.
} The final lanthanum concentration is 0.2M.
} To make this mixture, I first made a 2X stock solution of sym-collidine
} (purchased from EMS) and
} mixed according to their instructions where the sym-collidine is added
} along with an aliquot of
} 2.0N. HCL for the desired pH of 7.75.
} For a 200 ml sym-collidine kit, I made 100ml at 2x (5.34ml sym-
} collidine from kit, 5.0ml 2.0N HCL in 89.66 ml dH20).
} To make the final concentrations of the mixture (for 10ml) I added 5ml
} of the stock sym-collidine,
} 0.866 grams of lanthanum nitrate and 5ml of 0.2% aqueous osmium.
} When I add all the components together, it has a slightly yellow milky
} appearance. After mixing, the liquid becomes somewhat clear, but there
} is still a precipitate that settles at the bottom of the glass
} container. Phosphate buffered glutaraldehyde fixed samples were
} incubated in this mixture for two hours (after careful rinsing in
} phosphate buffer followed by 1X collidine buffer after primary
} fixation).
}
} After incubation, the samples were routinely processed for TEM
} (dehydrated in EtOH, propylene oxide and
} finally embedded in Epon 812 substitute). If prepared properly, the
} samples should have a layer of
} electron dense lanthanum nitrate crystals accumulated on the outside or
} surfaces of the samples and
} between come [some] of the cells.
} Mine do not so I suspect that I am doing something wrong. Can someone
} that has used this mixture successfully please give me some advice?
} Thanks in advance,
}
} Ben August
} University of Wisconsin - Electron Microscope Facility.
}
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From: kjmorris-at-well.ox.ac.uk
Date: Tue, 22 Nov 2011 04:09:56 -0600
Subject: [Microscopy] RE: 3D reconstruction of multiple, fluorescently labelled, sections

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Hi Emma,

We use Perkin Elmer's Volocity 3D visualisation software for this, but it is
expensive. Others may use Fuji or ImageJ 3D plug-ins which are free to use
and the confocal list-server replies have mentioned a few of those options.

Freebie Fuji's not really any different to Freebie ImageJ for 3D work as far
as I can see, and as you'd probably use a 3D ImageJ plug-in like
Deconvolution Labs so you may as well stick to ImageJ if you find a suitable
ImageJ 3D plug-in. Fuji's integral strength seems to be more stitching
together 2D images from motorised XY stage raster scans to recreate whole
tissue sections [which Photoshop CS4/5's Photomerge can also do well
provided there's overlap]. ImageJ plug-in Deconvolution Labs is quite
impressive for 3D rendering, although you might have to follow on-line help
to avoid the persistent memory crashes. It's PSF calculations seems similar
to Volocitys in that you don't have to input much to get going. The only
thing I'm sure about is adding together images to get the z-sequence - if
there's no ImageJ freebie for this I suppose any basic video editing package
should be able do this, such as PC Pro's A listed Sony Vegas Movie Studio HD
Platinum Suite 11 [£50]. Shouldn't be a problem though other than you need
to input your z distance between sections/optical slices.

Recreating 3D z stacks is very memory intensive and both freeware ImageJ and
expensive Volocity can struggle with frequent crashes due to system memory
problems. With Volocity that’s hopefully overcome with Windows 7 64-bit,
loads of system RAM memory [8Gb] and a fast 3D gaming card, as the codes
optimised for that - plus Volocity's strength has always been
Improvisions/Perkin Elmers help desk, where the answer to your problem is
generally minutes away [hence the reason I suppose why Volocity costs
serious money].

Although Volocity is expensive it's possible someone has a licence for the
program within the university, so it would be worth checking that out
[Perkin Elmer support who produce Volocity can advise]. If you find a
Volocity workstation, contact Perkin Elmer's Volocity support regarding your
spinal chords as they will be able offer advice on this. I've actually not
tried adding together single Z slices or multiple z stacks from multiple
sections using Volocity, as here we always create z-stacks from one specimen
and that’s done automatically by our acquisition software with a z motorised
focus and saved as a single Volocity compatible file [it can read most files
a microscope PC is likely to create]. Plus our Volocity version is out of
date and the latest may do more [we hope to upgrade to v6.0 this year]. It
should be pretty easy to add folders of images or image sequences to the
library though [it's all drag and drop].

I only mention Volocity as we have the software, there's also suitable 3D
plugins for other commercial packages like MetaMorph, Image Pro Plus, Imaris
and Huygens Software (SVI) to name a few, so check if nearby colleagues in
your university have these as well. Even if you end up using imageJ 3D
plugins, it's useful to see how the result compares with commercial 3D
visualisation and restoration software.

X-from our point of view the only thing Volocity lacks is a neurite outgrowth
tree measuring app, although our MetaMorph Offline has a Neurite Outgrowth
module and there's similar versions available as plug-ins for ImageJ [the
action of which we can usefully verify with our MetaMorph licence].
Bitplane's Imaris is also very strong in the 3D neurite measurement area
with their Filament Tracer software, and that seemed very impressive when
demo'd to us recently.

We also have NISElements and its EDF function [extended depth of focus]. The
EDF app also takes a wide-field [not confocal] Z stack through a tree like
structure [neurone type structures in brains or blood vessels in our case].
This time though it doesn't create a 3D image but analyses each image and
selects only the in-focus parts. It then adds all the focussed bits from
every image and fits them into a single 2D image - squashing the 3D tree
into a single focussed 2D photo of the tree as it were. So you want your 3D
tree structure lying across the field of view for this to work well.

If you are lucky enough to have a Volocity licence you probably won't be so
interested in ImageJ's versions as Volocity can do most that you would
require like deconvolution [Restoration], Quantitation [tracking objects and
volume/distance measurements], and Visualisation [4d videos], so others on
the Confocal/Microscopy list-servers who use ImageJ for this should be able
to advise on any 3D/4D plug-ins like Image5D (that looks like it can volume
quantitation), FluoRender or Hypervolume - plus there's plenty of help for
ImageJ on-line. We use ImageJ here as well as MetaMorph v7.7 here, but
largely for 2D image analysis as there's conveniently no licence
restrictions for ImageJ.


As posted on the confocal list-server, there are a few ImageJ courses
running at the moment in the UK that may help with your 3D work if you can't
access a commercial 3D package at your university [you could ask the ImageJ
course organisers whether they will cover this] :

----------------------------------
The University of Leicester's College of Medicine, Biological Sciences and
Psychology is running another ImageJ/Fiji image analysis workshop over two
days:

'Introduction to ImageJ/Fiji' on Monday 19 December 2011 'Writing macros in
ImageJ' on Tuesday 20 December 2011.

Their ImageJ workshops in July this year were heavily oversubscribed and so
they are being repeated. As there is a maximum 24 participants, book early
if you would like to attend [the fee is £50 per workshop or £80 for both].

Please visit their website:
http://www.le.ac.uk/biochem/microscopy/ImageJ2011b.html for more details.
----------------------------------
We are also running an introductory course on ImageJ-Fiji at the Institute
of Child Health at UCL in November.
for more information and to register go to
https://www.ucl.ac.uk/ich/services/lab-services/cmcf/training_courses

Best wishes, Bertrand
Bertrand Vernay, PhD
Microscopy Senior Research Associate
Developmental Biology Unit
UCL Institute of Child Health
30 Guilford Street
London WC1N 1EH, UK
-----------------------------------


Hope this helps, and good luck.

Regards

Keith

http://www.well.ox.ac.uk/volocity
http://www.nikoninstruments.eu/Products/Microscope-Systems/Software/NIS-Elem
ents-Software
http://www.well.ox.ac.uk/metamorph

*CONFOCAL list-server
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
And just follow the join/leave link



---------------------------------------------------------------------------
Dr Keith J. Morris,
Molecular Cytogenetics and Microscopy Core,
Laboratory 00/069 and 00/070,
The Wellcome Trust Centre for Human Genetics,
Roosevelt Drive,
Oxford OX3 7BN,
United Kingdom.

Telephone: +44 (0)1865 287568
Email: kjmorris-at-well.ox.ac.uk
Web-pages: http://www.well.ox.ac.uk/molecular-cytogenetics-and-microscopy







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From: oshel1pe-at-cmich.edu
Date: Tue, 22 Nov 2011 11:22:44 -0600
Subject: [Microscopy] Fwd: Ask-A-Microscopist - UA problems

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} Date: Tue, 22 Nov 2011 09:17:07 -0800
} From: {AssociationManagement-at-microscopy.org}
} Reply-To: "Susan C. Van Horn" {susan.vanhorn-at-susnysb.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Tuesday, November 22,
} 2011 at 09:16:58 AM.
}
} realname - Susan C. Van Horn
} Email - susan.vanhorn-at-susnysb.edu
} ORGANIZATION - SUNY -at- Stony Brook
} LOCATION - StonyBrook, New York, USA
} SUBJECT_OF_QUESTION - post staining precipitate
} QUESTION - We are suddenly having a precipitate problem on our
} sections which we suspect is from our uranyl acetate - little flecks
} and grainy looking.....is anyone having problems with their UA???
} and where are you purchasing it from???
} thanks
} sue
}
--
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From: oshel1pe-at-cmich.edu
Date: Tue, 22 Nov 2011 13:37:55 -0600
Subject: [Microscopy] Uranyl acetate problem - corrected

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} Date: Tue, 22 Nov 2011 11:25:49 -0800
} Reply-To: "Susan C. Van Horn" {susan.vanhorn-at-sunysb.edu}
} Subject: Ask-A-Microscopist
}
} realname - Susan C. Van Horn
} Email - susan.vanhorn-at-sunysb.edu
} ORGANIZATION - SUNY -at- Stony Brook
} LOCATION - StonyBrook, New York, USA
} SUBJECT_OF_QUESTION - post staining precipitate
} QUESTION - evidently my email from last posting was incorrect -
} sorry!!! am having a problem with what we believe to be UA precip -
} small "flecks" everywhere...we make our UA up in methanol and have
} used an old block that stained nicely previously but now has these
} flecks everywhere - ruling out anything in the embedding
} process....we have tried different lots of UA and was wondering if
} anyone has had similar problems or knows if the formula has
} changed!!!
} thanks so much!!!
} sue
}
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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Tue, 22 Nov 2011 13:41:21 -0600
Subject: [Microscopy] Fixation of liposomes

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I come back to Tom's mail on the preparation of liposomes for TEM.
Sorry for only answering today - a bit late.

} Title-Subject: [Filtered] Fixation of liposomes
} Message: Microscopists,
}
} Can anyone suggest a good protocol for fixing and preserving anionic
} liposomes for thin section
} analysis. There were some good liposome studies in the 80's with osmium and
} tannic acid but I can't
} get the original papers.
}
} Thanks for your input,
} Best regards,
}
} Tom Burrage
} Plum Island Animal Disease Center
} Greenport, New York 11944-0848

Before considering any studies on these liposomes by thin sectioning, I would spend some time exploring the "other" methods which have shown great potential in analysing liposomes ...
1. Cryo-TEM of suspensions,
2. freeze-fracture/-etching,
3. negative staining (preferably on Carbon-coated grids),
and only as 4th, I would go the way by fixation and dehydration and embedding. Even then, I would try to find a colleague who has CRYO in his lab: cryo-fixation and freeze-substitution-fixation plus embedding has a number of advantages (but also some con's, I know).

kind regards,
Reinhard

--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29



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From: ehaller-at-health.usf.edu
Date: Wed, 23 Nov 2011 07:12:10 -0600
Subject: [Microscopy] Lanthanum Nitrate

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Hi, Ben.


A friend of mine wrote a fine research paper back in 2001 in Tissue and Cell 33(6): 562-569, titled: Sites of Lanthanum Occlusion in the Testis of the Crayfish Procambrus paeninsulanus (Crustacea: Cambaridae), where she used lanthanum to trace tight junctions.

Her procedure was as follows:
Fix tissue in the presence of 2% lanthanum nitrate for 2 hours in aldehyde fixative (she used Karnovsky's). Replace the fixative with a 0.03M NaOH/PBS solution (Buckland-Nicks and Chia, 1986) for 30 minutes in order to facilitate lanthanum precipitation. Rinse tissue several times in PBS, then post-fix tissue in 1% osmium tetroxide/PBS with or without 1.5% potassium ferricyanide. She also experimented with adding additional lanthanum nitrate at this step.

Buckland-Nicks, J. and Chia, F. S. 1986. Fine structure of Sertoli cells in three marine snails with a discussion on the functional morphology of Sertoli cells in general. Cell Tissue Research 245: 305-313, 1986.

I haven't repeated her work, but her photos always impressed me, and she does good work. I hope this is of help.

Ed



Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119

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From: ruscid2-at-rpi.edu
Date: Wed, 23 Nov 2011 09:58:17 -0600
Subject: [Microscopy] Unexplained Gun Vacuum 'Burp' on Cameca SX100 with Gatan MonoCL

Contents Retrieved from Microscopy Listserver Archives
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Hello all-
We just experienced a rather unusual issue for the second time and
now we'd like to investigate it further. We have a Cameca SX100 using a
LaB6 source and equipped with a Gatan MonoCL3 cathodoluminescence
imaging system. During CL acquisition (during the last two attempts),
the gun vacuum inexplicably increases (ion pump shuts off, no vacuum
reading in gun), shutting off the beam and forcing us to open the gun
valve to position 3 so that the gun system can get back down to the
10^-6 Pa range. During this time, the vacuum in the chamber does not
seem to change and remains at the 10^-4 Pa level -- so we don't think
that its a problem with the CL mirror arm. It seems to occur when the
Digiscan system takes over control of the probe. Does anyone have a
similar experience or thoughts on why this would occur? Any helps
appreciated!
-Dan

--
Dan Ruscitto, Ph.D.

Laboratory Manager
1W13 Jonsson-Rowland Science Center
Earth& Environmental Sciences
Rensselaer Polytechnic Institute
110 8th St.
Troy NY 12180
Ph: 518-276-2372
Fax: 518-276-2012


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From: stefan.diller-at-t-online.de
Date: Wed, 23 Nov 2011 10:10:29 -0600
Subject: [Microscopy] Re: Unexplained Gun Vacuum 'Burp' on Cameca SX100 with

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Hello Dan
any chance that the ion pump might be at the end of its lifetime?
I had this problem at my LaB6-SEM just some weeks ago...
The pump had not been able to getter all the gas from the hot cathode environment after ca. 30 minutes of work and that
accelerated like an avalanche, the pump finally becoming very hot...

Best regards,
Stefan



-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.electronmicroscopy.info
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 23.11.11 17:02, schrieb ruscid2-at-rpi.edu:
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} ----------------------------------------------------------------------------
}
} Hello all-
} We just experienced a rather unusual issue for the second time and
} now we'd like to investigate it further. We have a Cameca SX100 using a
} LaB6 source and equipped with a Gatan MonoCL3 cathodoluminescence
} imaging system. During CL acquisition (during the last two attempts),
} the gun vacuum inexplicably increases (ion pump shuts off, no vacuum
} reading in gun), shutting off the beam and forcing us to open the gun
} valve to position 3 so that the gun system can get back down to the
} 10^-6 Pa range. During this time, the vacuum in the chamber does not
} seem to change and remains at the 10^-4 Pa level -- so we don't think
} that its a problem with the CL mirror arm. It seems to occur when the
} Digiscan system takes over control of the probe. Does anyone have a
} similar experience or thoughts on why this would occur? Any helps
} appreciated!
} -Dan
}

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From: Naomi_McCallum-at-health.qld.gov.au
Date: Wed, 23 Nov 2011 17:42:54 -0600
Subject: [Microscopy] TEM CCD camera failure

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Dear Listers

I am interested to hear from anyone who has had TEM CCD camera fail in recent years. Ours has failed multiple times over the 5 years. The first 2 times a cause was identified and the camera replaced. Since then failures have resulted in replacement of the camera and more recently replacement of component 'boards'.

Symptoms: bands of interference across the live image leading to rapid loss of signal; no output signal (histogram has flatlined); camera cannot be detected in device manager. Latest replacement of boards resulted in the camera being detected in the device manager but still no signal from the camera. Latest suggestion is to replace the digitizer.

Supplier response: Our service agent is assisting to achieve a resolution but no useful information as to the cause of the failure has been forthcoming from the supplier. The only information forwarded to us verbally was "the boards were fried".

Any suggestions?

Many thanks
Naomi




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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 25 Nov 2011 07:45:24 -0600
Subject: [Microscopy] viaWWW:TEM Negative staining HIV particles, a safety question.

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Email: hchen3-at-unl.edu Name: Han Chen

Organization: University of Nebraska Lincoln

Title-Subject: [Filtered] TEM Negative staining HIV particles, a safety question.

Message: We are BL1 level multiple disciplines users facility.
Now, there will be a user to do fixed HIV samples for negative staining. Some users feel
uncomfortable to hear this. As I know, fixed HIV samples should be OK in our facility. Does anybody
have suggestions that we need to fellow to handle this case? I have checked our University and NIH
website, cannot find useful information.
If you have a safety protocol for this situation, could you share it with me? Any suggetion is
appreciated.

Thank you for your help.

Han

Login Host: 129.93.135.50
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From: paul_hazelton-at-umanitoba.ca
Date: Fri, 25 Nov 2011 08:16:23 -0600
Subject: [Microscopy] Re: viaWWW:TEM Negative staining HIV particles, a safety

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Han

To my knowledge all studies ever conducted has show that HIV is
inactivated by standard fixation methods. In fact, fixation as low as
0.2% Glutaraldehyde is considered to be effective.


paul hazelton
--
Paul R. Hazelton, PhD
Department of Medical Microbiology
Head of Electron Microscopy
Lab Director, Viral Gastroenteritis Study Group
University of Manitoba
511 Basic Medical Sciences Building
745 Bannatyne Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
paulhazelton-at-mts.net
Phone: 204-789-3313 (w);
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: Matthew.Hannah-at-hpa.org.uk
Date: Fri, 25 Nov 2011 11:07:27 -0600
Subject: [Microscopy] Re: viaWWW:TEM Negative staining HIV particles, a

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Han

I cannot comment specifically on the amount of fixative required to
inactivate HIV, but I would make sure that you know precisely what the
researcher means by the term fixation. Fixation is a rather nebulous
concept and can mean very different things to different people (or even
different things to the same people doing different procedures, eg
fixation for immunofluorescence vs fixation for EM). They and you need
to know that their treatment (chemicals, concentration and time) is
sufficient to inactivate all of the virus.

Matthew


Dr. Matthew J Hannah
Lead Electron Microscopist
Virus Reference Department
Health Protection Agency
61 Colindale Avenue
London NW9 5EQ
tel: 020 8327 6212

-----Original Message-----
X-from: paul_hazelton-at-umanitoba.ca [mailto:paul_hazelton-at-umanitoba.ca]
Sent: 25 November 2011 14:23
To: Matthew Hannah

Han

To my knowledge all studies ever conducted has show that HIV is
inactivated by standard fixation methods. In fact, fixation as low as
0.2% Glutaraldehyde is considered to be effective.


paul hazelton
--
Paul R. Hazelton, PhD
Department of Medical Microbiology
Head of Electron Microscopy
Lab Director, Viral Gastroenteritis Study Group
University of Manitoba
511 Basic Medical Sciences Building
745 Bannatyne Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
paulhazelton-at-mts.net
Phone: 204-789-3313 (w);
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: jmircheski-at-us.es
Date: Fri, 25 Nov 2011 11:43:24 -0600
Subject: [Microscopy] TEM Negative staining HIV particles, a safety

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Han,

I have no experience working with viral samples, but while recently reading
some books on EM, I came upon a chapter that treated fixation of virus, and
safety. I don’t remember exactly what was the conclusion, but I sure
remember one thing, that someone managed to rescue viral particles (some,
not all of them) from already fixed and embedded sample for  standard (I
think) EM. So, please check the literature, there should be enough papers on
HIV in EM and do contact the authors of the papers.
Unfortunately, I can’t tell you the book title, because I was checking quite
a few (all borrowed) and I don’t remember in which one I read it.

Hope this helps,

Josif

Dr. Josif Mircheski
____________________________________________________________________________
___
Instituto de Biomedicina de Sevilla (IBIS), Lab 108
Campus del Hospital Universitario Virgen del Rocio/CSIC/Univ. de Sevilla
Avda. Manuel Siurot S/Nº
41013 Sevilla
Spain
 
Phone:+34-955923045
e-mail: jmircheski-at-us.es
web: www.ibis-sevilla.es




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From: PWebster-at-hei.org
Date: Fri, 25 Nov 2011 12:58:36 -0600
Subject: [Microscopy] Re: viaWWW:TEM Negative staining HIV particles, a

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Han (and everyone else),

Biosafety issues are not a subject for casual discussion on a listserver, they are to be addressed by the relevant institutional biosafety committee.

For Han, I suggest he stop the researcher using the HIV until an approved IBC protocol is in place. This protocol should address how the virus will be handled before it gets to the EM lab, how it will be handled in the EM lab and how it will be safely disposed of once it has been imaged.

The protocol should address suitable labeling of all materials to be used in the lab, warning signs outside and inside the lab, and relevant personal protective equipment.

The biosafetly committee is a group of experts who will understand the safety issues of handling biological hazards and will offer the best advice for handling the virus.

The other users have every right to be concerned by potential exposure to virus until there is an approved IBC protocol in place.

The protocol should also address issues such as how the TEM specimen holder will be sterilized after use so that it can be safely handled by the other users. Again, the safety issue itself may not be important (if the virus is chemically fixed and has been irradiated), but the safety of all users has to be addressed first.

An approved IBC protocol should be in place for any lab that is handing viral, bacterial and fungal pathogens: for human cell lines and human bodily fluids. If the lab is routinely handling unfixed human materials it is also advisable for the staff to be vaccinated against the hepatitis b virus.

Failure to adhere to approved protocols (or failure to even apply for them) can result in loss of NIH funding and law suits.

Regards,

Paul Webster.

House Research Institute
2100 W. 3rd St.
Los Angeles,
CA 90057, USA.

I thought this was so important an issue that I am willing to bear the Thanksgiving "out of office" junk messages that await - does anyone unsubscribe when the go away from the office?


-----Original Message-----
X-from: Matthew.Hannah-at-hpa.org.uk [mailto:Matthew.Hannah-at-hpa.org.uk]
Sent: Fri 11/25/2011 9:11 AM
To: Webster, Paul

Hi Han

I cannot comment specifically on the amount of fixative required to
inactivate HIV, but I would make sure that you know precisely what the
researcher means by the term fixation. Fixation is a rather nebulous
concept and can mean very different things to different people (or even
different things to the same people doing different procedures, eg
fixation for immunofluorescence vs fixation for EM). They and you need
to know that their treatment (chemicals, concentration and time) is
sufficient to inactivate all of the virus.

Matthew


Dr. Matthew J Hannah
Lead Electron Microscopist
Virus Reference Department
Health Protection Agency
61 Colindale Avenue
London NW9 5EQ
tel: 020 8327 6212

-----Original Message-----
X-from: paul_hazelton-at-umanitoba.ca [mailto:paul_hazelton-at-umanitoba.ca]
Sent: 25 November 2011 14:23
To: Matthew Hannah

Han

To my knowledge all studies ever conducted has show that HIV is
inactivated by standard fixation methods. In fact, fixation as low as
0.2% Glutaraldehyde is considered to be effective.


paul hazelton
--
Paul R. Hazelton, PhD
Department of Medical Microbiology
Head of Electron Microscopy
Lab Director, Viral Gastroenteritis Study Group
University of Manitoba
511 Basic Medical Sciences Building
745 Bannatyne Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
e-mail: paul_hazelton-at-umanitoba.ca
paulhazelton-at-mts.net
Phone: 204-789-3313 (w);
204-489-6924 (h)
Cell: 204-781-6982
Fax: 204-789-3926


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From: PWebster-at-hei.org
Date: Sun, 27 Nov 2011 14:15:49 -0600
Subject: [Microscopy] Re: viaWWW:TEM Negative staining HIV particles, a safety

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Han,
Several have replied with comments about fixation and safety committee
rulings. It is my experience that most virus particles are inactivated in
seconds upon fixation. Even BSL-3 and BSL-4 particles are inactivated for
one hour in fixative (4% para/2% glut) and then placed in osmium tetroxide
vapor to bring them out of containment. My experience is that there is a
good deal of information about inactivation of surfaces with various
substances, but little to no real information about specific fixatives for
EM fixation and analysis. It is possible to do test runs with the fixative
on virus particles that were allowed to adhere to coverslips to determine
the effectiveness of the fixative on virus inactivation. You could get the
PI to do one test with a specific amount of virus solution and treat the
coverslip for one hour and then put the washed coverslip into a culture
flask to see if there were any remaining viable particles. Anyway, my two
cents. I have always found that 1 hour in 4% paraformaldehyde/2%
glutaraldehyde is a great inactivating solution for pretty much anything.
I typically do this at room temperature. If you are still a little
hesitant about the time, double it to 2 hours.
Hope this helps,
Robert



On Fri, Nov 25, 2011 at 8:54 AM, {
microscopylistserver-noreply-at-microscopy.com} wrote:

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}
} Organization: University of Nebraska Lincoln
}
} Title-Subject: [Filtered] TEM Negative staining HIV particles, a safety
} question.
}
} Message: We are BL1 level multiple disciplines users facility.
} Now, there will be a user to do fixed HIV samples for negative staining.
} Some users feel
} uncomfortable to hear this. As I know, fixed HIV samples should be OK in
} our facility. Does anybody
} have suggestions that we need to fellow to handle this case? I have
} checked our University and NIH
} website, cannot find useful information.
} If you have a safety protocol for this situation, could you share it with
} me? Any suggetion is
} appreciated.
}
} Thank you for your help.
}
} Han
}
} Login Host: 129.93.135.50
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From isabecaromell201102-at-yahoo.com.hk Sun Nov 27 09:58:14 2011
Return-Path: {isabecaromell201102-at-yahoo.com.hk}
Received: from mail.netrip.mobi (s100.GosakaFL6.vectant.ne.jp [202.215.111.100])
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Received: from User (unknown [46.183.217.253])
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Sat, 26 Nov 2011 14:58:43 +0900 (JST)
Reply-To: {isabecaromell201101-at-yahoo.com.hk}

Dear all,

My message about obtaining IBC approval for handling pathogens was not aimed at being critical of aldehydes as sterilizing agents, but to notify everyone that NIH-approved procedures for obtaining permissions for handling these agents are absolute.

Formaldehyde and glutaraldehyde are efficient sterilizing agents that have been used as such for many years. However, there is much more to handling pathogens than making sure the agent has been sterilized.

I think that other users will need to know whether the pathogen will be inactivated before it is brought to the EM laboratory, which space will be used, how the grids be disposed of after use, how aerosols will be prevented, and if other users will be notified when someone using the pathogen is working in the shared space?

Submitting an IBC protocol should be an easy process but once it is approved it will put the safety protocols in the hands of the PI and give the head of the EM lab a level of control that will be needed if the people handling the pathogen are not as careful as they should be.

In the case of HIV virus, the risk of cross-infection is very low even if the particles are not inactivated with aldehyde or bleach, but the risk is still there. Check with your IBC before doing anything.

Paul Webster.

House Research Institute
2100 W 3rd. St.
Los Angeles
CA 90057, USA.


-----Original Message-----
X-from: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Sun 11/27/2011 6:47 AM
To: Webster, Paul

Han,
Several have replied with comments about fixation and safety committee
rulings. It is my experience that most virus particles are inactivated in
seconds upon fixation. Even BSL-3 and BSL-4 particles are inactivated for
one hour in fixative (4% para/2% glut) and then placed in osmium tetroxide
vapor to bring them out of containment. My experience is that there is a
good deal of information about inactivation of surfaces with various
substances, but little to no real information about specific fixatives for
EM fixation and analysis. It is possible to do test runs with the fixative
on virus particles that were allowed to adhere to coverslips to determine
the effectiveness of the fixative on virus inactivation. You could get the
PI to do one test with a specific amount of virus solution and treat the
coverslip for one hour and then put the washed coverslip into a culture
flask to see if there were any remaining viable particles. Anyway, my two
cents. I have always found that 1 hour in 4% paraformaldehyde/2%
glutaraldehyde is a great inactivating solution for pretty much anything.
I typically do this at room temperature. If you are still a little
hesitant about the time, double it to 2 hours.
Hope this helps,
Robert



On Fri, Nov 25, 2011 at 8:54 AM, {
microscopylistserver-noreply-at-microscopy.com} wrote:

}
}
}
}
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} Email: hchen3-at-unl.edu Name: Han Chen
}
} Organization: University of Nebraska Lincoln
}
} Title-Subject: [Filtered] TEM Negative staining HIV particles, a safety
} question.
}
} Message: We are BL1 level multiple disciplines users facility.
} Now, there will be a user to do fixed HIV samples for negative staining.
} Some users feel
} uncomfortable to hear this. As I know, fixed HIV samples should be OK in
} our facility. Does anybody
} have suggestions that we need to fellow to handle this case? I have
} checked our University and NIH
} website, cannot find useful information.
} If you have a safety protocol for this situation, could you share it with
} me? Any suggetion is
} appreciated.
}
} Thank you for your help.
}
} Han
}
} Login Host: 129.93.135.50
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original
} Headers==============================
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==============================Original Headers==============================
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From: nizets2-at-yahoo.com
Date: Mon, 28 Nov 2011 02:31:36 -0600
Subject: [Microscopy] Re: viaWWW:TEM Negative staining HIV particles, a

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi to all,
 
I must agree with Paul on this matter.
HIV poses real safety issues and working without a precise protocol and strict rules is irresponsible.
If someone fixes the virus with aldehydes this should be done in a fume hood with strict safety procedures.
Is the fume hood BSL-2? What kind of filter does the hood have? Who has access to the hood?
Even after fixation you should not treat it as a BSL-1 material.
Let me remind you that one of the principles of BSL-2 is containment, meaning only authorized personal has access to the material and everything is precisely labeled. As Paul said, everybody has the right to work in a secure environment. You must assure that untrained personal never come in contact with this material.
Never meaning not even once, by mistake.
 
 
 
 
 
X-from: "PWebster-at-hei.org" {PWebster-at-hei.org}
To: nizets2-at-yahoo.com
Sent: Friday, November 25, 2011 8:02 PM

Dear Han (and everyone else),

Biosafety issues are not a subject for casual discussion on a listserver, they are to be addressed by the relevant institutional biosafety committee.

For Han, I suggest he stop the researcher using the HIV until an approved IBC protocol is in place. This protocol should address how the virus will be handled before it gets to the EM lab, how it will be handled in the EM lab and how it will be safely disposed of once it has been imaged.

The protocol should address suitable labeling of all materials to be used in the lab, warning signs outside and inside the lab, and relevant personal protective equipment.

The biosafetly committee is a group of experts who will understand the safety issues of handling biological hazards and will offer the best advice for handling the virus.

The other users have every right to be concerned by potential exposure to virus until there is an approved IBC protocol in place.

The protocol should also address issues such as how the TEM specimen holder will be sterilized after use so that it can be safely handled by the other users. Again, the safety issue itself may not be important (if the virus is chemically fixed and has been irradiated), but the safety of all users has to be addressed first.

An approved IBC protocol should be in place for any lab that is handing viral, bacterial and fungal pathogens: for human cell lines and human bodily fluids. If the lab is routinely handling unfixed human materials it is also advisable for the staff to be vaccinated against the hepatitis b virus.

Failure to adhere to approved protocols (or failure to even apply for them) can result in loss of NIH funding and law suits.

Regards,

Paul Webster.

House Research Institute
2100 W. 3rd St.
Los Angeles,
CA 90057, USA.

I thought this was so important an issue that I am willing to bear the Thanksgiving "out of office" junk messages that await - does anyone unsubscribe when the go away from the office?


-----Original Message-----
X-from: Matthew.Hannah-at-hpa.org.uk [mailto:Matthew.Hannah-at-hpa.org.uk]
Sent: Fri 11/25/2011 9:11 AM
To: Webster, Paul

Hi Han

I cannot comment specifically on the amount of fixative required to
inactivate HIV, but I would make sure that you know precisely what the
researcher means by the term fixation. Fixation is a rather nebulous
concept and can mean very different things to different people (or even
different things to the same people doing different procedures, eg
fixation for immunofluorescence vs fixation for EM). They and you need
to know that their treatment (chemicals, concentration and time) is
sufficient to inactivate all of the virus.

Matthew


Dr. Matthew J Hannah
Lead Electron Microscopist
Virus Reference Department
Health Protection Agency
61 Colindale Avenue
London NW9 5EQ
tel: 020 8327 6212

-----Original Message-----
X-from: paul_hazelton-at-umanitoba.ca [mailto:paul_hazelton-at-umanitoba.ca]
Sent: 25 November 2011 14:23
To: Matthew Hannah

Han

To my knowledge all studies ever conducted has show that HIV is
inactivated by standard fixation methods.  In fact, fixation as low as
0.2% Glutaraldehyde is considered to be effective.


paul hazelton
--
Paul R. Hazelton, PhD
Department of Medical Microbiology
Head of Electron Microscopy
Lab Director, Viral Gastroenteritis Study Group
University of Manitoba
511 Basic Medical Sciences Building
745 Bannatyne Avenue
Winnipeg, Manitoba, Canada, R3E 3J7
  e-mail:      paul_hazelton-at-umanitoba.ca
                  paulhazelton-at-mts.net
  Phone:        204-789-3313 (w);
                  204-489-6924 (h)
  Cell:          204-781-6982
  Fax:          204-789-3926


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From: nizets2-at-yahoo.com
Date: Mon, 28 Nov 2011 10:02:41 -0600
Subject: [Microscopy] leak in pneumatics (TEM)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear listers,
 
We have leak in the pneumatics system of our tecnai G20 TEM and I would appreciate to receive some clue about how to deal with it.
At first we had a clear leak at the manometer, the one where to main pressured air is connected to (indicating normally 5 bar). Now we have replaced the part and this part al least seems ok now but we still hear a hissing sound unter the microscope when we put the pressure at 5 bar. The sound disappears when the pressure drops to 4 bars but the pressure still continue to drop down to atmospheric pressure.
I am not sure if there is a more efficient way to check for leaks than unplug all connections are replug them.
Actually one technician offered us to use a can of a substance which is supposed to detect leaks but I don't know if it would be hazardous to use in on the pneumatics of a TEM. It is not written on the flask what kind of substance it is. It is a product from Linde and is called TPS 674 (a german product). I give here a link to an example:
http://www.gasecenter-shop.de/Propan/Propanzubehoer/Lecksuchspray-125-ml-zum-schnellen-Auffinden-von-Undichtigkeiten::84.html
 
Any suggestion welcome.
 
Regards,
Stephane now awaiting the massive amount of out-of-office replies (last time 21)


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 28 Nov 2011 10:05:46 -0600
Subject: [Microscopy] viaWWW:Need guidance for Buying new TEM

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Email: ravi.thakkar-at-iitb.ac.in Name: Ravi Thakkar

Organization: Indian Institute of Technology, Bombay, INDIA.

Title-Subject: [Filtered] Need guidance for Buying new TEM

Message: Dear Listeners,

What are the criterion are taken to be considered for the purchase of new TEM .??


Kindly guide me to purchase new TEM. following are the objective and required features.
Objective : Biological and soft samples.
Required Features : Cryo Mode operation, FEG, 40-200 KT HT capacity, STEM, EDAX, Bright field with
Dark field, Electron Diffraction, 3 D Tomography, EELS (optional).

With Thanks and regards.
------------------------------------------------------------
Ravindra Thakkar
Cryo TEM - Central Facility in SAIF,
C/O Prof. Jayesh Bellare,
Dept. of Chemical Engineering,
I.I.T. Bombay,
Mumbai - 400076 (INDIA)
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From: wesaia-at-iastate.edu
Date: Tue, 29 Nov 2011 12:27:33 -0600
Subject: [Microscopy] Need PCD assembly or bellows for Auger probe

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We have a JEOL JAMP-7830F auger microprobe on campus. It has recently developed a leak around the bellows of the probe current detector.

That system is not under service contract but it does get a lot of use. Does anyone out there happen to have such a system sitting idle from which we could get the PCD assembly?

JEOL is looking into availability of the part, but we would like to open this up to the wider community. You folks have helped out wonderfully in similar circumstances before.

Warren Straszheim


==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 29 Nov 2011 20:39:38 -0600
Subject: [Microscopy] viaWWW:HIV safety

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From: jacques.faerber-at-ipcms.u-strasbg.fr
Date: Wed, 30 Nov 2011 02:40:52 -0600
Subject: [Microscopy] Re: Need PCD assembly or bellows for Auger probe

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Warren

It should be possible to find a bellow manufacturer in the USA which
could repare yours. We had soon such problemes on UHV STM, Auger, MBE,
etc, with wobble stick or other bellowed devices, and in Europe we have
several companies which make and can repair such bellows. Of coarse one
must dismantle the hole PCD.
In the USA you can ask Huntington, MDC, HVA or Lesker, or make a search
with "vacuum bellow" as key word.
The price may varie much, between a smale manufacturer and a big seller,
which will contract out and take its profit margin.

Meanwhile, you can stop the leak with a spray or varnish like "Leak
Sealent" sold by SPI for exemple
(http://www.2spi.com/catalog/vac/vacleak.shtml).

Hope it helps

Veuillez prendre note de la nouvelle adresse mail.

J. Faerber
IPCMS-DSI
Institut de Physique et Chimie des Matériaux de Strasbourg
Département Surfaces et Interfaces
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail Jacques.Faerber-at-ipcms.unistra.fr


Le 29/11/2011 19:40, wesaia-at-iastate.edu a écrit :
} ----------------------------------------------------------------------------
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}
} We have a JEOL JAMP-7830F auger microprobe on campus. It has recently developed a leak around the bellows of the probe current detector.
}
} That system is not under service contract but it does get a lot of use. Does anyone out there happen to have such a system sitting idle from which we could get the PCD assembly?
}
} JEOL is looking into availability of the part, but we would like to open this up to the wider community. You folks have helped out wonderfully in similar circumstances before.
}
} Warren Straszheim
}
}
} ==============================Original Headers==============================
} 5, 29 -- From wesaia-at-iastate.edu Tue Nov 29 12:27:33 2011
} 5, 29 -- Received: from mailexch-1.iastate.edu (mailexch-1.iastate.edu [129.186.140.21])
} 5, 29 -- by ns.microscopy.com (8.12.11.20060308/8.12.8) with ESMTP id pATIRXFt021194
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} 5, 29 -- From: "Straszheim, Warren E [BIOTC]" {wesaia-at-iastate.edu}
} 5, 29 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
} 5, 29 -- Date: Tue, 29 Nov 2011 12:27:32 -0600
} 5, 29 -- Subject: Need PCD assembly or bellows for Auger probe
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} 5, 29 -- Thread-Index: Acyuv5+5QXpeVoCqTZyXaW7BWHCZQA==
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From: oshel1pe-at-cmich.edu
Date: Wed, 30 Nov 2011 07:07:54 -0600
Subject: [Microscopy] Re: Need PCD assembly or bellows for Auger probe

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This reminds me: another place to look for vacuum parts is Duniway Stockroom:
http://www.duniway.com

Phil

} Hi Warren
}
} It should be possible to find a bellow manufacturer in the USA which
} could repare yours. We had soon such problemes on UHV STM, Auger, MBE,
} etc, with wobble stick or other bellowed devices, and in Europe we have
} several companies which make and can repair such bellows. Of coarse one
} must dismantle the hole PCD.
} In the USA you can ask Huntington, MDC, HVA or Lesker, or make a search
} with "vacuum bellow" as key word.
} The price may varie much, between a smale manufacturer and a big seller,
} which will contract out and take its profit margin.
}
} Meanwhile, you can stop the leak with a spray or varnish like "Leak
} Sealent" sold by SPI for exemple
} (http://www.2spi.com/catalog/vac/vacleak.shtml).
}
} Hope it helps
}
} Veuillez prendre note de la nouvelle adresse mail.
}
} J. Faerber
} IPCMS-DSI
} Institut de Physique et Chimie des Matériaux de Strasbourg
} Département Surfaces et Interfaces
} 23, rue de Loess ; BP43
} 67034 Strasbourg CEDEX 2
} France
}
} Tel 00 33(0)3 88 10 71 01
} Fax 00 33(0)3 88 10 72 48
} E-mail Jacques.Faerber-at-ipcms.unistra.fr
}
}
} Le 29/11/2011 19:40, wesaia-at-iastate.edu a écrit :
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } We have a JEOL JAMP-7830F auger microprobe on
} } campus. It has recently developed a leak around
} } the bellows of the probe current detector.
} }
} } That system is not under service contract but
} } it does get a lot of use. Does anyone out there
} } happen to have such a system sitting idle from
} } which we could get the PCD assembly?
} }
} } JEOL is looking into availability of the part,
} } but we would like to open this up to the wider
} } community. You folks have helped out
} } wonderfully in similar circumstances before.
} }
} } Warren Straszheim
} }
} }
} } ==============================Original Headers==============================
} } 5, 29 -- From wesaia-at-iastate.edu Tue Nov 29 12:27:33 2011
} } 5, 29 -- Received: from mailexch-1.iastate.edu
} } (mailexch-1.iastate.edu [129.186.140.21])
} } 5, 29 -- by ns.microscopy.com
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--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
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(989) 774-3576


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From: jjmccarthy-at-wisc.edu
Date: Wed, 30 Nov 2011 08:57:06 -0600
Subject: [Microscopy] TEM: Tecnai T12 Cryo Holder

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We are looking for a used single tilt cryoholder for our Tecnai T12. Needs
to be compatible with FEI compustage.

Please contact me by email, if you have one to offer and we can discuss.

Regards
Jon

Jon J McCarthy, Ph.D.
Director, Shared Instrument Facilities
Co-Director Advance Materials Industrial Consortium
UW College of Engineering
Room 272, Materials Science and Engineering
1509 University Ave, Madison WI 53706
Phone: 608-263-1073
Cell:608-345-6134
jjmccarthy-at-wisc.edu



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 30 Nov 2011 18:52:46 -0600
Subject: [Microscopy] viaWWW:TEM JEOL Double Tilt Hot Stage Controller

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
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Email: eoptics-at-mcmaster.ca

Name: Fred Pearson

Organization: McMaster University

Title-Subject: [Filtered] TEM JEOL Double Tilt Hot Stage Controller

Message: I am looking for circuit diagrams or manual for a Gatan older model Beta controller for the
Y tilt for our hotstage.

The model number of this unit is 646-0300.

The cables and holder check as being okay, but the controller will not advance the tilt.

Any help would be appreciated.

Login Host: 130.113.54.155
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 30 Nov 2011 18:53:16 -0600
Subject: [Microscopy] viaWWW:TEM of fetal mice eyes

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
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Email: Georgianne.Ciraolo-at-cchmc.org Name: Georgianne Ciraolo

Organization: Cincinnati Chhildren's Hospital Medical Center

Title-Subject: [Filtered] TEM of fetal mice eyes

Message: I have recently been approached to study the eyes of fetal mice. My standard fixation
would be 3% Glut/ cacodylate buffer but I am wonder if anyone has a better fixative and would to share.

Thanks in advance for your help.

Georgianne Ciraolo
em tech II
Georgianne.Ciraolo-at-cchmc.org


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From: d.sokolov-at-massey.ac.nz
Date: Wed, 30 Nov 2011 19:08:05 -0600
Subject: [Microscopy] Theory of AFM for beginners

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,

what book would you suggest as a good introduction to the theory of
Atomic Force Microscopy for protein / biology researchers please?

Thank you beforehand.

With kind regards,
Dmitry

--
Dr. Dmitry Sokolov
Honorary Research Associate
Institute of Fundamental Sciences
Riddet Road, Massey University
Private Bag 11-222, Palmerston North
Mob: +64(21)063-5382



==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 1 Dec 2011 07:44:23 -0600
Subject: [Microscopy] viaWWW:TEM of fetal mice eyes

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Georgianne

I study the ultrastructure of tadpole eyes. Your standard fix should work but you should section
the cornea to ensure better penetration of the fixative. I usually enucleate the eyes, put them in
cold fix for 1/2 -1h (tadpole eyes are approximately 1mm3), puncture the cornea, and return them to
cold fix. You should work the dehydration/ embedding times closely as they tend to vary with
species. For the tadpole eyes, for instance, I usually do 1h dehydration steps at RT.

Good luck!

Tami


================================

Tami Bogea, PhD
Research Associate
University of British Columbia
Department of Ophthalmology & Visual Sciences
2250 Willow St. Vancouver BC V5Z 3N9
P: (604) 875-4648

________________________________________
} From: microscopylistserver-noreply-at-microscopy.com [microscopylistserver-noreply-at-microscopy.com]
Sent: November-30-11 5:04 PM
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Email: Georgianne.Ciraolo-at-cchmc.org Name: Georgianne Ciraolo

Organization: Cincinnati Chhildren's Hospital Medical Center

Title-Subject: [Filtered] TEM of fetal mice eyes

Message: I have recently been approached to study the eyes of fetal mice. My standard fixation
would be 3% Glut/ cacodylate buffer but I am wonder if anyone has a better fixative and would to share.

Thanks in advance for your help.

Georgianne Ciraolo
em tech II
Georgianne.Ciraolo-at-cchmc.org


Login Host: 205.142.197.75
---------------------------------------------------------------------------



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 1 Dec 2011 07:44:37 -0600
Subject: [Microscopy] [Filtered] Re: viaWWW:TEM of fetal mice eyes

Contents Retrieved from Microscopy Listserver Archives
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I don't know about fetal eyes, but adult retinas tend to detach after just
glut fixation. Check the literature & Paul Webster at the Eye Institute
will probably have the best input.

Roger Moretz

On Wed, Nov 30, 2011 at 7:58 PM, {
microscopylistserver-noreply-at-microscopy.com} wrote:

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} Title-Subject: [Filtered] TEM of fetal mice eyes
}
} Message: I have recently been approached to study the eyes of fetal mice.
} My standard fixation
} would be 3% Glut/ cacodylate buffer but I am wonder if anyone has a better
} fixative and would to share.
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} Thanks in advance for your help.
}
} Georgianne Ciraolo
} em tech II
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 1 Dec 2011 15:56:24 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:immunogold labelling of chitosan

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://microscopy.com/MLFormMail.html
---------------------------------------------------------------------------
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Email: monica.nelea-at-polymtl.ca Name: Monica Nelea

Organization: Ecole Polytechnique

Title-Subject: [Filtered] immunogold labelling of chitosan for TEM

Message: Hello everyone,
I would like to ask if someone of you have experience in immunogold labelling of chitosan. If yes,
could you please let me know about how to proceed: steps, schemas, protocols to be applied? Any
advice is highly welcomed ant much appreciated.
Thanks in advance.
Monica


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From: jkrupp-at-deltacollege.edu
Date: Thu, 1 Dec 2011 16:21:28 -0600
Subject: [Microscopy] Blatant call for attention

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi

Please excuse this rude interruption of your important work.

The EM program at Delta College is calling out for attention. We made a Facebook page at

Electron Microscopy at SJ Delta College

and we invite everyone to take a look. We want to reach out to everyone to help us maintain and improve our program. So, if you are a past, present, or future student, a potential sponsor or employer, or just want to know more about us, stop by and take a look.

Thanks

Jon

Jonathan Krupp
Delta College
5151 Pacific Ave.
Box 212
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College








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From: leunissen-at-aurion.nl
Date: Thu, 1 Dec 2011 17:38:06 -0600
Subject: [Microscopy] Re: [Filtered] MicroscopyListserverviaWWW:immunogold labelling of chitosan

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Monica,

There are many protocols for immuno labelling which may give reasonable results with many antigens. If you need one, you could start by checking out the website of gold reagent suppliers or delve into the wealth of info archived from messages that were sent in to this List over the past years .

Labelling of chitosan may be a bit more tricky than labelling the average antigen (if there is such a thing). With the abundance of repeating amino groups in the chitosan backbone there is a fair chance of false positive background. If this should happen it is likely because of a polar interaction between NH3+ groups and negatively charged gold particles.

This type of interaction can be suppressed by using one or a combination of the following:

-- incubate at a slightly basic pH, perhaps about 8.4 using e.g. Tris buffered saline. The number of protonated groups will be lowered with higher pH.
-- use a relatively high NaCl concentration in the incubation buffer. This will suppress charge interactions similar to what happens in ion exchange chromatography. For some of the antigens that I have played around with NaCl concentrations between 300 and 600 mM gave excellent results with both reduced background and increased specific results. When working with hydrated tissue or sections you may want to be cautious, however, because the structural preservation may become affected.
-- use a poly-anionic additive to the incubation buffer. Poly-anions have the same sign charge as the gold particle, at least at a pH of 7 or higher . They will therefor compete with gold particles for binding to NH3+ groups, thus reducing the background by competition.

Having said that: of course always start out applying a standard protocol. If that works then all the theory and worries were unnecessary.

Please feel free to contact me off list if you need more info.

Bonne chance!

Jan Leunissen

Aurion
ImmunoGold Reagents

http://www.aurion.nl





On 2/12/2011, at 10:56 AM, microscopylistserver-noreply-at-microscopy.com wrote:

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}
} Title-Subject: [Filtered] immunogold labelling of chitosan for TEM
}
} Message: Hello everyone,
} I would like to ask if someone of you have experience in immunogold labelling of chitosan. If yes,
} could you please let me know about how to proceed: steps, schemas, protocols to be applied? Any
} advice is highly welcomed ant much appreciated.
} Thanks in advance.
} Monica
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18, 21 -- From leunissen-at-aurion.nl Thu Dec 1 17:38:06 2011
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From: beth-at-plantbio.uga.edu
Date: Fri, 2 Dec 2011 08:52:05 -0600
Subject: [Microscopy] immunogold labeling of chitosan

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

HI Monica,
Below is our basic procedure for gold-labeling. Like Jan said the NaCl
concentration matters. We tend to use a high salt content in the buffer.
good luck with your labeling,
Beth

GOLD LABELING PROTOCOL
Sections must be on gold or gold-gilded grids.

Use a petri dish to create a moist chamber - wet filter paper with H2O
(to keep moisture level high) then put a piece of parafilm on top of
the moist filter paper. Do controls in a separate petri dish.

1. Place grid on a drop of KPBS (potassium phosphate buffered saline,
0.1M KPB and 0.5M NaCl, pH 7.2) - hydrate 5-10 minutes.

2. Next drop - 3% skim milk ((0.03g non-fat milk in 1 ml buffer), for
1 hour. Prepared fresh and centrifuged for a few seconds before use.

3. Next drop - KPBS - 5 minutes.

4. 1° Ab - dilution of your choice (usually 1:20) - 1 hour or more
(centrifuge briefly before use). For a control = OMIT the primary
antibody.

5. Rinse in buffer (use squeeze bottle), remove excess H2O with a
filter paper.

6. 2° Ab - dilution of your choice (usually 1:50), 1 hr (centrifuge
briefly before use).

7. Rinse for 30 sec in buffer (use squeeze bottle).

8. Rinse for 30 sec in dH2O (use squeeze bottle).

9. Post stain with uranyl acetate and lead citrate.

Variation:
Use less salt in the buffer or different blocking agent or longer
incubation times or different dilutions of primary and/or secondary
antibodies.

Make Stock Buffer:

A) Potassium phosphate mono (KH2PO4) 1M – 6.8 g/50 ml ddH2O.

B) Potassium phosphate dibasic (K2HPO4) 1M – 8.71g/50 ml ddH2O

Use 1.6 ml of A + 8.4 ml of B = 10 ml
Then add 90 ml dd H2O = 100 ml of stock buffer.

Put 14.61 g of NaCl in 450 ml of dd H2O* and stir. Then add 50 ml of
stock buffer = 500 ml of 0.1 M KPBS in 0.5 M NaCl and stir.


==============================Original Headers==============================
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From: vitalylazar-at-att.net
Date: Fri, 2 Dec 2011 09:21:25 -0600
Subject: [Microscopy] Re: Re: Need PCD assembly or bellows for Auger probe

Contents Retrieved from Microscopy Listserver Archives
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try this:

http://www.msbellows.com/product.htm
http://www.sigmanetics.com/index.htm
http://www.seymoursheridan.com/Content/Stainless_Steel_Bellows.asp
http://www.uhvdesign.com/
http://www.metalflexbellows.com/
http://www.bellowstech.com/

delivery may take 2 to 4 weeks

Vitaly Feingold
SIA
2773 Heath Lane
Duluth GA 30096
Ph. 770-232-7785
Fax 770-232-1791
www.sia-cam.com
vitaly-at-sia-cam.com

On 11/30/2011 8:08 AM, oshel1pe-at-cmich.edu wrote:
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}
} This reminds me: another place to look for vacuum parts is Duniway Stockroom:
} http://www.duniway.com
}
} Phil
}
} } Hi Warren
} }
} } It should be possible to find a bellow manufacturer in the USA which
} } could repare yours. We had soon such problemes on UHV STM, Auger, MBE,
} } etc, with wobble stick or other bellowed devices, and in Europe we have
} } several companies which make and can repair such bellows. Of coarse one
} } must dismantle the hole PCD.
} } In the USA you can ask Huntington, MDC, HVA or Lesker, or make a search
} } with "vacuum bellow" as key word.
} } The price may varie much, between a smale manufacturer and a big seller,
} } which will contract out and take its profit margin.
} }
} } Meanwhile, you can stop the leak with a spray or varnish like "Leak
} } Sealent" sold by SPI for exemple
} } (http://www.2spi.com/catalog/vac/vacleak.shtml).
} }
} } Hope it helps
} }
} } Veuillez prendre note de la nouvelle adresse mail.
} }
} } J. Faerber
} } IPCMS-DSI
} } Institut de Physique et Chimie des Matériaux de Strasbourg
} } Département Surfaces et Interfaces
} } 23, rue de Loess ; BP43
} } 67034 Strasbourg CEDEX 2
} } France
} }
} } Tel 00 33(0)3 88 10 71 01
} } Fax 00 33(0)3 88 10 72 48
} } E-mail Jacques.Faerber-at-ipcms.unistra.fr
} }
} }
} } Le 29/11/2011 19:40, wesaia-at-iastate.edu a écrit :
} } } ----------------------------------------------------------------------------
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} } }
} } } We have a JEOL JAMP-7830F auger microprobe on
} } } campus. It has recently developed a leak around
} } } the bellows of the probe current detector.
} } }
} } } That system is not under service contract but
} } } it does get a lot of use. Does anyone out there
} } } happen to have such a system sitting idle from
} } } which we could get the PCD assembly?
} } }
} } } JEOL is looking into availability of the part,
} } } but we would like to open this up to the wider
} } } community. You folks have helped out
} } } wonderfully in similar circumstances before.
} } }
} } } Warren Straszheim
} } }
} } }
} } } ==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 2 Dec 2011 09:56:21 -0600
Subject: [Microscopy] viaWWW:HIV or related

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Email: bplowman Name: Barbara Plowman

Organization: University of the Pacific

Title-Subject: [Filtered] HIV or related

Message: Excuse me. I thought this was an open forum! I underst5and negative staining HIV is not
the same as HIV cell infected research. But, the issue was of safety and our group has a P3 level
laboratory. Safety precautions are of concern when working with any pathogenic organism. I was not
treating it lightly.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 2 Dec 2011 09:56:44 -0600
Subject: [Microscopy] viaWWW:PTFE Flat Embedding Mold

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Email: tbogea-at-mail.ubc.ca Name: Tami Bogea

Organization: University of British Columbia

Title-Subject: [Filtered] PTFE Flat Embedding Mold

Message: Hi everyone

Just a quick question: Has anyone used the PTFE flat molds sold by EMS to polymerize LRWhite resin?
I would appreciate if you could share your experience on how well the resin consistently
polymerizes under these conditions (ideal temperature and time of polymerization etc).

Thanks!!

Tami Bogea, PhD
Research Associate
University of British Columbia

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From: AJBowling-at-dow.com
Date: Fri, 2 Dec 2011 14:40:31 -0600
Subject: [Microscopy] viaWWW:PTFE Flat Embedding Mold

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Hi Tami,

I sometimes use a similar mold from Pella. I find that getting the ACLAR onto the thing without trapping bubbles to be annoying, especially with the shrinkage of LRW during polymerization. Instead, I just overfill the cavities slightly, orient the specimens as desired, and put the filled mold into a plastic dish with sides about 1 cm high (so the bag won't touch the resin) and I put this whole thing into a zip lock bag and fill it with nitrogen (or argon from the sputter coater tank). Just zip the bag mostly closed over the gas tubing, get a stream of gas flowing and let the bag fill, pushing down on the bag a couple of times to purge O2, then let it fill a bit, pull out the tubing, and press the final cm of zip lock closed. Then load it into the oven at ~58 deg C for 2-2.5 hrs. If you put enough resin into the mold that the cavities are joined, they will actually come out as a single strip that is pretty convenient, as getting the blocks out of the mold can be a little tricky because it's not as flexible as the silicone molds.

Hope this helps,

Andy Bowling

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Email: tbogea-at-mail.ubc.ca Name: Tami Bogea

Organization: University of British Columbia

Title-Subject: [Filtered] PTFE Flat Embedding Mold

Message: Hi everyone

Just a quick question: Has anyone used the PTFE flat molds sold by EMS to polymerize LRWhite resin?
I would appreciate if you could share your experience on how well the resin consistently
polymerizes under these conditions (ideal temperature and time of polymerization etc).

Thanks!!

Tami Bogea, PhD
Research Associate
University of British Columbia

Login Host: 137.82.183.94
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From: duraine-at-bcm.edu
Date: Fri, 2 Dec 2011 16:19:13 -0600
Subject: [Microscopy] viaWWW:PTFE Flat Embedding Mold

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Hi Tami,

In our experience it is better to not fill all the molds with samples. We have to orientate drosophila retina and larvae very strategically. We place our samples into the center 6 wells, overfill the wells including two extra empty ones on either side of the samples. Press the Aclar film over the samples first then gently lay out the film toward both sides so that the resin pours over into the left-over empty well spaces. The very end well spaces will not polymerise very well, but the ones with the samples will turn out very well, at least for us. We then place the mold into a 60 degree oven overnight to two days. So far we have been able to thick section and do fluorescence staining with no problem. Hope this helps.


Lita Duraine
EM Technologist
Howard Hughes Medical Institute
Molecular Genetics
Duncan Neurological Research Institute
1250 Moursand St.
Houston, TX 77030
room: N1165.17
mailstop: NR1125
832-824-8772 EM Lab
832-824-8750 Main Lab
979-549-6526 Cell


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Email: tbogea-at-mail.ubc.ca Name: Tami Bogea

Organization: University of British Columbia

Title-Subject: [Filtered] PTFE Flat Embedding Mold

Message: Hi everyone

Just a quick question: Has anyone used the PTFE flat molds sold by EMS to polymerize LRWhite resin?
I would appreciate if you could share your experience on how well the resin consistently polymerizes under these conditions (ideal temperature and time of polymerization etc).

Thanks!!

Tami Bogea, PhD
Research Associate
University of British Columbia

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 2 Dec 2011 17:04:35 -0600
Subject: [Microscopy] viaWWW:PTFE Flat Embedding Mold

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Email: tbogea-at-mail.ubc.ca Name: Tami Bogea

Organization: University of British Columbia

Title-Subject: [Filtered] PTFE Flat Embedding Mold

Message: Hi everyone

Just a quick question: Has anyone used the PTFE flat molds sold by EMS to polymerize LRWhite resin?
I would appreciate if you could share your experience on how well the resin consistently
polymerizes under these conditions (ideal temperature and time of polymerization etc).

Thanks!!

Tami Bogea, PhD
Research Associate
University of British Columbia

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 2 Dec 2011 17:04:56 -0600
Subject: [Microscopy] viaWWW:mounting on carbon planchets

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Email: andrea.suarez-at-ucdenver.edu Name: Andrea

Organization: CU dermpath

Title-Subject: [Filtered] mounting on carbon planchets

Message: We are doing a project where we will be doing QEMSCAN, which has the capacity to do a very
sophisticated analysis of mineral composition. We will be looking for volcanic ash deposition in
human skin samples, and would like to embedd the tissues in as pure a fashion as possible, with
optimum antigen preservation. We have some concerns about parrafin embedding, as we plan to mount
the sections onto carbon planchets. Our experience w/ this in the past, is that adherence to the
planchet is poor after deparafinizaiton. Therefore, we would like to optimize adherence, if
possible, or avoid the need for deparafinization by embedding in a wax (such as carnuba) w/ a very
high melting temp.

1.) Does anyone have any experience/insight regarding embedding in carnuba wax? 2.) Any
recomendations as to how to improve adherence to the carbon planchet in the event that we do end up
having to de-parafinize? Instead of paraffin, PEG embedding may be better, and was reading about
using agarose blocks to improve transfer to slides. Does anyone have any experience/recommendations
regarding agarose block method? We were thinking that adding albumin to the water bath may help
things too. Other thoughts include coating the planchets w/ a carbon paste.

Many thanks and I look forward to hearing from you.

Sincerely,

Andrea Suarez, MD/PhD


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 2 Dec 2011 17:05:26 -0600
Subject: [Microscopy] viaWWW:PTFE Flat Embedding Molds

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Email: maryard-at-uga.edu Name: Mary Ard

Organization: College of Vet Med, University of Georgia

Title-Subject: [Filtered] PTFE Flat Embedding Molds

Message: Responding to Dr. Tami Bogea: Dr. Bogea, we use the PTFE flat mold all the time for
LRWhite resin. We consistently use the protocol suggested in the Technical Data Sheet that
accompanies the product. We have always gotten excellent results.

Regards, Mary


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 2 Dec 2011 17:05:52 -0600
Subject: [Microscopy] viaWWW:TEM HIV negative staining one more biosafe question

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Email: hchen3-at-unl.edu Name: Han Chen

Organization: University of Nebraska Lincoln

Title-Subject: [Filtered] TEM HIV negative staining one more biosafe question

Message: I would like to say thank you for all the people who replied my post. My user will bring
fixed HIV samples(fixed by 2% glutaraldehyde for 2 hours in room time). So the user will do negative
staining for the fixed HIV samples. My next question will be: Dose the fixed HIV samples will be OK
for BSL1 lab? Any suggestion will be welcome. Thanks.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 2 Dec 2011 17:06:24 -0600
Subject: [Microscopy] viaWWW:Microscopy and Microanalysis

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Email: bob.price-at-uscmed.sc.edu Name: Bob Price

Organization: Univ South Carolina

Title-Subject: [Filtered] Microscopy and Microanalysis

Message: Dear All,

As you try to get that last manuscript submission of 2011 off of your list of things to do please
consider sending your work to Microscopy and Microanalysis, the Journal of the Microscopy Society of
America. MAM consistently has one of the highest impact factors among imaging related journals
(currently 3.25) and with our recently approved contract with Cambridge University Press we now
offer free full color printing throughout the journal.
Other advantages of publishing in MAM include:

No submission charges
Electronic submission through Manuscript Central (http://mc.manuscriptcentral.com/mam)
Online publication ahead of print
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Indexed in Pubmed and Medlines
Cambridge Journals alert systems to insure the research community is alerted to publication of your work
Descriptive technique development, review and original research articles are published.
For more information visit the Microscopy Society of America ( http://www.microscopy.org ) or
Cambridge Journals Online ( http://journals.cambridge.org/mam ) websites

Bob

Bob Price
Research Professor
Editor-in-Chief, Microscopy and Microanalysis
USC School of Medicine
6439 Garner's Ferry Road
Columbia, SC 29209
803-216-3824 (T)
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From: lamiller-at-illinois.edu
Date: Fri, 2 Dec 2011 17:39:56 -0600
Subject: [Microscopy] Job Openings at MRL - University of Illinois

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Greetings,

There are some job openings at the Frederick Seitz Materials Research Laboratory at the University of Illinois

https://jobs.illinois.edu/default.cfm?page=job&jobID=13912

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From: ehaller-at-health.usf.edu
Date: Mon, 5 Dec 2011 07:49:51 -0600
Subject: [Microscopy] viaWWW:mounting on carbon planchets

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Hi, Andrea,

In preparing lung biopsies with asbestosis for SEM/EDX, I took parafin embedded tissue sections and mounted them on carbon double stick tape on aluminum stubs, then rinsed them with xylene to remove the parafin, did a quick 100% ethanol drying and carbon coated the samples. I was able to both see good structure and identify the ferruginous bodies by secondary and backscattered imaging and EDS without a problem with this technique.

Ed Haller

Edward Haller, Lab Manager
University of South Florida
Integrative Biology Department
Electron Microscopy Core
SCA 110
4202 East Fowler Avenue
Tampa, FL 33620
813-974-2676
ehaller-at-usf.edu
Office: LSA 119
________________________________________
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Email: andrea.suarez-at-ucdenver.edu Name: Andrea

Organization: CU dermpath

Title-Subject: [Filtered] mounting on carbon planchets

Message: We are doing a project where we will be doing QEMSCAN, which has the capacity to do a very
sophisticated analysis of mineral composition. We will be looking for volcanic ash deposition in
human skin samples, and would like to embedd the tissues in as pure a fashion as possible, with
optimum antigen preservation. We have some concerns about parrafin embedding, as we plan to mount
the sections onto carbon planchets. Our experience w/ this in the past, is that adherence to the
planchet is poor after deparafinizaiton. Therefore, we would like to optimize adherence, if
possible, or avoid the need for deparafinization by embedding in a wax (such as carnuba) w/ a very
high melting temp.

1.) Does anyone have any experience/insight regarding embedding in carnuba wax? 2.) Any
recomendations as to how to improve adherence to the carbon planchet in the event that we do end up
having to de-parafinize? Instead of paraffin, PEG embedding may be better, and was reading about
using agarose blocks to improve transfer to slides. Does anyone have any experience/recommendations
regarding agarose block method? We were thinking that adding albumin to the water bath may help
things too. Other thoughts include coating the planchets w/ a carbon paste.

Many thanks and I look forward to hearing from you.

Sincerely,

Andrea Suarez, MD/PhD


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 7 Dec 2011 02:16:53 -0600
Subject: [Microscopy] viaWWW:EDX Spectrum of Silicone Rubber

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Hello all,

I'm posting this question for one of our researchers. Any suggestions?

I am doing some immunocytochemistry on cryosections and parraffin secions.
The main problem I am having deals with proper fixation -- These insects
are unique in that they are viviparous and give birth to fully developed
larvae. I have been able to fix young females by injecting them with 4%
paraformaldehyde followed by 3 days at 4C in fixative. After this I cut
them in half with a razor and refix for several more days. The problem is
when I look at blood fed or pregnant flies- Everything is getting fixed
except the developing larvae and the blood filled alimentary tract. I have
stayed with paraformaldehyde because I nne to immunostain sections. In
addition when I section the paraffin embedded material the specimens tear
if I attempt to cut sections smaller then seven microns. Do you have
any recommendations of other fixatives that would be compatible with
immunostaining???


Thank you
Karen Kelley
University of Florida



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From johnnarzika-at-ymail.com Tue Dec 6 08:20:51 2011
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Email: donk-at-ardl.com Name: Don Kierstead

Organization: Akron Rubber Development Laboratories, Inc.

Title-Subject: [Filtered] RE: EDX Spectrum of Silicone Rubber

Message: I am having trouble with interpreting an EDX spectrum of a
silicone rubber sample. The elements detected are carbon (8295
counts)), oxygen (13,483 counts), and silicon (90549). So, as you can
see, I have a really big silicon peak with oxygen being a moderate sized
peak and carbon small. The problem I am having is that I'm getting a
small (910 cnt) peak at 2.235KeV that doesn't really line up with any
specific x-rays on any of the charts and does not appear to be an escape
or sum peak for any of the elements present. The closest identification
would be either thallium or mercury, but it is not likely They would be
present in the rubber. I do get a good sized silicon sum peak at
3.465KeV (1136 cnt.). The question to the list is whether or not this
peak is an artifact or perhaps a silicon x-ray peak that is not listed
on the charts. I am operating an IXRF EDS 2008 computer software. Any
feedback would be greatly appreciated!

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From: opmills-at-mtu.edu
Date: Wed, 7 Dec 2011 07:53:45 -0600
Subject: [Microscopy] Materials: Gallistan in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Good morning.

I've been asked to image Gallistan (Gallium, Tin, Indium) in our SEM. Note that the SEM is not a variable pressure system. Should I be concerned about outgassing and contamination of the specimen chamber?

Thanks

Owen Mills
Michigan Tech University
Houghton, MI

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From: vray-at-partbeamsystech.com
Date: Wed, 7 Dec 2011 09:43:52 -0600
Subject: [Microscopy] Re: Materials: Gallistan in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

In - Indium is UHV compatible
Ga - Gallium is vacuum-compatible at least till 10-9Torr
Sn - Tin (as metal) should be UHV compatible

Alloy has low melting temperature, but I'd expect that vapor pressure at
room temperature would still be much lower then 10-8Torr - good enough
for high-vacuum SEM...

Cheers :)
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 12/7/2011 8:54 AM, opmills-at-mtu.edu wrote:
} ----------------------------------------------------------------------------
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} Good morning.
}
} I've been asked to image Gallistan (Gallium, Tin, Indium) in our SEM. Note that the SEM is not a variable pressure system. Should I be concerned about outgassing and contamination of the specimen chamber?
}
} Thanks
}
} Owen Mills
} Michigan Tech University
} Houghton, MI
}
} ==============================Original Headers==============================
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From: vray-at-partbeamsystech.com
Date: Wed, 7 Dec 2011 13:13:54 -0600
Subject: [Microscopy] Materials: Gallistan in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Frederik

I am not a metallurgist either, but dealt quite a bit with construction
of vacuum hardware.

Based on my experience, which is always limited and often incorrect,
behavior of the alloyed metals in vacuum has tendency to follow behavior
of the components. If Zinc is not a vacuum-compatible then it will
outgass from bronzes with high Zn content. If Al and Cu are
vacuum-compatible then Al brass is excellent UHV material. etc... I
can't claim that this rule of thumb works always, but most of the times
it does.

You were specifically asking about outgassing - based on the components
of the Gallistan it should not outgass in high vacuum. I did not test
this myself and there is always a possibility that I may be wrong, but I
feel confident enough to the point that I would load Gallistan into my
own SEM without hesitation. And in my particular case - if SEM is
damages then I would have to pay for parts to repair it from my own pocket!

I just took a quick look - the only reference on vapor pressure on
Gallistan that I find only seem to suggest that its vapor pressure at
500C is below 10-8Torr - should be even lower at room temperature.

http://en.wikipedia.org/wiki/Galinstan

The MSDS which you sent gives the same information, and 10-8 is lower
then in any commonly available HV SEM

However you will need to take precautions to avoid spill of the liquid
Gallistan inside of the SEM chamber. I would not bring in large
quantities of it, just for the fear of accidentally spilling it. Maybe
drill tiny blind hole in the stab to hold a drop?

The fact that it wets/etches almost everything and forms amalgam with Al
means that if you are planning on doing EDX then you may want to place a
drop of it in some kind of PTFE (grounding will need to be addresse) or
maybe graphite holder. I would go for graphite - it is available and
machinable, thus should be easy to glue a piece of graphite on SEM stab
and drill a small hole into the graphite for holding a drop of liquid
Gallistan.

Other approach would be to rig your SEM with Peltier stage and freeze
the monster.

P.S. I do not see any problem with being wrong from time to time, so
there are no issues with distributing messages.

Cheers :)

Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 12/7/2011 1:14 PM, Monson, Frederick wrote:
} Afternoon Valery,
}
} } From what I see, [(MSDS) http://www.rgmd.com/msds/msds.pdf], it appears to 'eat' or 'wet' lots of materials like 'skin oil' and 'firm metals', one of which is aluminum, and perhaps it would 'bind' or 'wet' the nickel film on the inside of my cast aluminum chamber (FEI Quanta 400 ESEM).
}
} I am not a metallurgist, but this MSDS appears, toward the end, to get down to the real non-biological business of the stuff.
}
} Also, with respect, it is apparently not about the components, it's about the properties of the mixture or 'solution'.
}
} I have heard of using Wood's Metal to fill microcracks in concrete prior to SEM.
}
} Gallinstan is conductive, so if a small drop were on a piece of grounded copper, one might get away with it, but is copper a 'firm' metal in this context (and on an Al stub)?
}
} Sorry for the disaggreement, but I thought there was much more to the story.
}
} Regards,
}
} Fred Monson
}
} P.S. I respect your rep, so I have sent this to you for distribution as you think reasonable.
}
} Frederick C. Monson, PhD
} Technical Director
} Center for Microanalysis and Imaging, Research and Training (CMIRT)
} Schmucker Science Center South
} West Chester University, West Chester, PA 19383
} 610-738-0437
}
} Home Page: http://cmirt.wcupa.edu
} Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl
}
} ===============================================================================
} -----Original Message-----
} From: vray-at-partbeamsystech.com [mailto:vray-at-partbeamsystech.com]
} Sent: Wednesday, December 07, 2011 10:55 AM
} To: Monson, Frederick
} Subject: [Microscopy] Re: Materials: Gallistan in SEM
}
}
}
}
} ----------------------------------------------------------------------------
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}
} In - Indium is UHV compatible
} Ga - Gallium is vacuum-compatible at least till 10-9Torr
} Sn - Tin (as metal) should be UHV compatible
}
} Alloy has low melting temperature, but I'd expect that vapor pressure at
} room temperature would still be much lower then 10-8Torr - good enough
} for high-vacuum SEM...
}
} Cheers :)
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063 - leave a message with call-back number
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
} Web: www.freudlabs.com
}
} On 12/7/2011 8:54 AM, opmills-at-mtu.edu wrote:
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Good morning.
} }
} } I've been asked to image Gallistan (Gallium, Tin, Indium) in our SEM. Note that the SEM is not a variable pressure system. Should I be concerned about outgassing and contamination of the specimen chamber?
} }
} } Thanks
} }
} } Owen Mills
} } Michigan Tech University
} } Houghton, MI
} }
} } ==============================Original Headers==============================
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From: DusevichV-at-umkc.edu
Date: Wed, 7 Dec 2011 13:29:01 -0600
Subject: [Microscopy] RE: viaWWW:EDX Spectrum of Silicone Rubber

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The peak you see is very close to O+Si sum peak, and I strongly believe it is the O+Si peak. You can try to decrease intensity of excitation beam until Si sum peak disappear, then O+Si peak should disappear also.
Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Director
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784


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} Sent: Wednesday, December 07, 2011 2:19 AM
} To: Dusevich, Vladimir
} Subject: [Microscopy] viaWWW:EDX Spectrum of Silicone Rubber
}
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} Email: donk-at-ardl.com Name: Don Kierstead
}
} Organization: Akron Rubber Development Laboratories, Inc.
}
} Title-Subject: [Filtered] RE: EDX Spectrum of Silicone Rubber
}
} Message: I am having trouble with interpreting an EDX spectrum of a
} silicone rubber sample. The elements detected are carbon (8295
} counts)), oxygen (13,483 counts), and silicon (90549). So, as you can
} see, I have a really big silicon peak with oxygen being a moderate
} sized
} peak and carbon small. The problem I am having is that I'm getting a
} small (910 cnt) peak at 2.235KeV that doesn't really line up with any
} specific x-rays on any of the charts and does not appear to be an
} escape
} or sum peak for any of the elements present. The closest
} identification
} would be either thallium or mercury, but it is not likely They would be
} present in the rubber. I do get a good sized silicon sum peak at
} 3.465KeV (1136 cnt.). The question to the list is whether or not this
} peak is an artifact or perhaps a silicon x-ray peak that is not listed
} on the charts. I am operating an IXRF EDS 2008 computer software. Any
} feedback would be greatly appreciated!
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 8 Dec 2011 02:17:20 -0600
Subject: [Microscopy] viaWWW:EDX Spectrum of Silicone Rubber

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Email: eggert-at-mikroanalytik.de Name: Frank Eggert

Organization: EDAX

Title-Subject: [Filtered] EDX Spectrum of Silicone Rubber

Message: This is pile-up: Si+O

Frank

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 9 Dec 2011 03:01:33 -0600
Subject: [Microscopy] viaWWW:Amray 1860 FE Scanning Electron Microscope support

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Email: stevebuckingham-at-comcast.net Name: Steve Buckingham

Organization: Satki3

Title-Subject: [Filtered] Amray 1860 FE Scanning Electron Microscope support

Message: I'm thinking of purchasing a used Amray 1860 FE Scanning
Electron Microscope but I am concerned that there may not be support or
parts still available for these systems. The system is in full working
condition right now and can be demonstrated for performance.
However, I would be interested to know what kind of support still exists
for repair of these systems along with information on the availability
of parts.
Many Thanks,
Steve

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From: vray-at-partbeamsystech.com
Date: Fri, 9 Dec 2011 06:23:37 -0600
Subject: [Microscopy] Re: viaWWW:Amray 1860 FE Scanning Electron Microscope

Contents Retrieved from Microscopy Listserver Archives
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The word on the street is that service for AMRAY SEMs may be available
from North Billerica. Contact these guys:

http://www.semtechsolutions.com/

Cheers :)
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 12/9/2011 4:04 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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}
} Organization: Satki3
}
} Title-Subject: [Filtered] Amray 1860 FE Scanning Electron Microscope support
}
} Message: I'm thinking of purchasing a used Amray 1860 FE Scanning
} Electron Microscope but I am concerned that there may not be support or
} parts still available for these systems. The system is in full working
} condition right now and can be demonstrated for performance.
} However, I would be interested to know what kind of support still exists
} for repair of these systems along with information on the availability
} of parts.
} Many Thanks,
} Steve
}
} Login Host: 68.61.156.255
} ---------------------------------------------------------------------------
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}
}
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4, 42 -- Date: Fri, 09 Dec 2011 07:23:34 -0500
4, 42 -- From: "vray-at-partbeamsystech.com" {vray-at-partbeamsystech.com}
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4, 42 -- Subject: Re: [Microscopy] viaWWW:Amray 1860 FE Scanning Electron Microscope
4, 42 -- support
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From: oshel1pe-at-cmich.edu
Date: Fri, 9 Dec 2011 10:13:41 -0600
Subject: [Microscopy] clinical programs for EM proficiency

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
not a member the listserver, and
**any reply should go directly to the poster**
as well as to the list.
Using the "reply" function in your email does *not* send your answer
to the person asking the question.
Please copy their email address from their question.
****************************************************************************************

Please note that I have already suggested going to the MSA
certification website. But: is this sufficient for clinical/pathology
certification in TEM?

} Date: Fri, 9 Dec 2011 08:03:56 -0800
} From: {AssociationManagement-at-microscopy.org}
} Reply-To: Cathy Kuehner BEMT/MSA {Cathy.Kuehner-at-hcmed.org}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Friday, December 09,
} 2011 at 08:03:55 AM.
}
} realname - Cathy Kuehner BEMT/MSA
} Email - Cathy.Kuehner-at-hcmed.org
} ORGANIZATION - Hennepin Co Medical Center
} LOCATION - Minneapolis, Mn 55404, USA
} SUBJECT_OF_QUESTION - Proficiency testing
} QUESTION - The clinical/patholgy labs at our institution are
} accredited by the College of American Pathologists.
} For our next inspection CAP states that all accredited labs must
} participate in a proficiency program.
} We are having a difficult time finding a proficiency program for
} TEM. CAP does not have program for EM.
} Do know know how other diagnostic labs deal with this issue?


==============================Original Headers==============================
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From: dljones-at-bestweb.net
Date: Fri, 9 Dec 2011 18:37:45 -0600
Subject: [Microscopy] viaWWW:Amray 1860 FE Scanning Electron Microscope

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Electron Optics Service services the old Amray microscopes. The guy who
runs it is Jimmy Fotinopoulos. They have a warehouse full of old Amrays
that they use for parts. You could call him and see if he covers that
model: 973 669 3134

My only interest is as a satisfied customer.

dj

On Fri, 9 Dec 2011, vray-at-partbeamsystech.com wrote:

}
}
}
} ----------------------------------------------------------------------------
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}
} The word on the street is that service for AMRAY SEMs may be available
} from North Billerica. Contact these guys:
}
} http://www.semtechsolutions.com/
}
} Cheers :)
} Valery Ray
} =================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844 USA
} Phone: +1-978-296-5063 - leave a message with call-back number
} US Mobile: +1-978-305-0479
} Skype: pbstmeo
} E-mail: vray-at-partbeamsystech.com
} Web: www.partbeamsystech.com
} Web: www.freudlabs.com
}
} On 12/9/2011 4:04 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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} } Email: stevebuckingham-at-comcast.net Name: Steve Buckingham
} }
} } Organization: Satki3
} }
} } Title-Subject: [Filtered] Amray 1860 FE Scanning Electron Microscope support
} }
} } Message: I'm thinking of purchasing a used Amray 1860 FE Scanning
} } Electron Microscope but I am concerned that there may not be support or
} } parts still available for these systems. The system is in full working
} } condition right now and can be demonstrated for performance.
} } However, I would be interested to know what kind of support still exists
} } for repair of these systems along with information on the availability
} } of parts.
} } Many Thanks,
} } Steve
} }
} } Login Host: 68.61.156.255
} } ---------------------------------------------------------------------------
} }
} }
} }
} } ==============================Original Headers==============================
} } 8, 25 -- From microscopylistserver-noreply-at-microscopy.com Fri Dec 9 03:01:32 2011
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} 4, 42 -- From: "vray-at-partbeamsystech.com" {vray-at-partbeamsystech.com}
} 4, 42 -- Reply-To: vray-at-partbeamsystech.com
} 4, 42 -- Organization: PBS&T
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} 4, 42 -- CC: microscopy-at-microscopy.com
} 4, 42 -- Subject: Re: [Microscopy] viaWWW:Amray 1860 FE Scanning Electron Microscope
} 4, 42 -- support
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==============================Original Headers==============================
5, 21 -- From dljones-at-bestweb.net Fri Dec 9 18:37:45 2011
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5, 21 -- Date: Fri, 09 Dec 2011 19:37:53 -0500 (Eastern Standard Time)
5, 21 -- From: David Jones {dljones-at-bestweb.net}
5, 21 -- Subject: Re: [Microscopy] Re: viaWWW:Amray 1860 FE Scanning Electron Microscope
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From: uti-at-umbtech.com
Date: Fri, 9 Dec 2011 19:13:42 -0600
Subject: [Microscopy] North Carolina - Job opportunity

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear group,
We have electronic design and programming job openings in central
part of NC. Development and pre-manufacturing stage, some research.
Full time and part time. Some remote programming and hardware
development may be available.
For details, send resume to me directly with you questions.
Thanks


==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 10 Dec 2011 03:46:33 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW:Confocal Workshop University

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://microscopy.com/MLFormMail.html
---------------------------------------------------------------------------
Remember this posting is most likely not from a Subscriber, so when
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MIcroscopy Listserver
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Email: {PRICE-at-gw.med.sc.edu} Name: "Bob Price"
Organization: University of South Carolina

Title-Subject: [Filtered] Confocal Workshop

Question: The University of South Carolina Instrumentation Resource
Facility and the South Carolina EPSCoR (NSF) and INBRE (NIH) programs
will be hosting a hands on workshop in Basic Confocal Microscopy from
June 18-21. Full details concerning the workshop and registration
information can be found at
http://www.scepscor.org/outreach/workshops/confocal-microscopy/home.html
The workshop will consist of both lectures and laboratory sessions and
is directed towards beginning and intermediate level users of confocal
microscopy. Topics covered will include the basics of fluorescence and
selection of probes, specimen fixation and staining, proper set up of
operating parameters for collection of images, composition of digital
confocal images, the use of image enhancement and analysis programs such
as Photoshop and Metamorph for confocal images, and the use of 3-D
reconstruction programs such as AMIRA.
Instructors for the workshop will include Dr. Jay Jerome from Vanderbilt
University, Dr. John Mackenzie from North Carolina State University, Dr.
Tom Trusk from the Medical University of South Carolina, and Drs. Bob
Price and John Fuseler from the USC School of Medicine.
A variety of confocal microscopes including the BD CARV spinning disk,
Leica, Nikon, Olympus, and Zeiss systems are scheduled to be on hand for
the laboratory sessions. Applications experts from each of the companies
will also be on hand for discussion of their specific systems.
Participants are encouraged to bring their own specimens for sample
preparation and imaging sessions, but a variety of cell culture and
tissue sections will also be available for laboratory sessions on
fluorescent staining and imaging.
For further information or questions please contact Bob Price
(Price-at-med.sc.edu)
Workshop on Basic Confocal Microscopy
Monday June 18, 2007
8:30-9:00 Registration and Continental Breakfast, Bldg 1, Room B59 USC
School of Medicine
9:00-9:15 Welcome and Logistics
9:15-10:15 Introduction and Overview of Confocal Microscopy: Jay Jerome
(Vanderbilt University) and Bob Price (USC School of Medicine)
10:15-10:45 Break and Discussion
10:45-12:00 Basics of Fluorescence, Dye Characteristics: Jerome and Price
12:00-1:00 Lunch (Provided) and discussion
1:00-3:00 Specimen Preparation: Jerome and Price
3:00-3:30 Break and Discussion
3:30-?? Lab * Specimen Preparation and processing:
Processing of own samples or samples will be provided. Fixation through
overnight primary antibody incubation
Dinner on your own

Tuesday June 19, 2007
8:30-9:00 Continental Breakfast * Room B59
9:00-10:00 Lab - Wash specimens and secondary antibody incubation
10:00-10:30 Break and Discussion
10:30-12:00 Components, proper set up of operating parameters, and types
of confocal microscopes: Jerome and Price 12:00-1:30 Lunch (Provided)
and Specimen Processing
1:30-2:30 Digital Images in Confocal Microscopy * Jerome and Price
2:30-4:00 Lab * finish specimen processing
4:00-6:00 Time on Instruments (BD CARV, Leica, Nikon, Olympus, Zeiss
systems are scheduled to be available)
Dinner on your own

Wednesday June 20, 2007
8:30-9:00 Continental Breakfast * Room B59
9:00-12:00 Photoshop, etc with confocal images (John Mackenzie * North
Carolina State University)
12:00-1:00 Lunch
1:00-5:00 Time on Confocal Instruments and Software
6:00-?? Reception on Lake Murray

Thursday June 21, 2007
8:30-9:00 Continental Breakfast * Room B59
9:00-11:00 3-D reconstruction of confocal data sets with AMIRA (Tom
Trusk * Medical University of South Carolina)
11:00-12:00 Ethics in Use of Confocal Images, Available Resources,
Discussion
12:00 - 4:00 Lunch and additional time on Confocal Instruments and
Software (Photoshop, AMIRA, Metamorph)


Robert L. Price, PhD
Research Professor and Director, Instrumentation Resource Facility
School of Medicine, USC
Bldg 1 Room B60
6439 Garner's Ferry Road
Columbia, SC 29208

Fax: 803-733-1533
Telephone: 803-733-3392



---------------------------------------------------------------------------


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 10 Dec 2011 03:51:15 -0600
Subject: [Microscopy] [Filtered] MicroscopyListserverviaWWW: ERROR by Nestor - Confocal

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Colleagues

I inadvertently forwarded the Email below to the listserver.
Sorry, it is an OLD Email for a workshop from several years
ago. I neglected to check the date and when I saw in in my
in box thought it was a new message for a new workshop.

Please do not fault Bob Price, it is my fault entirely.

Nestor

Your Friendly Neighborhood SysOp








This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://microscopy.com/MLFormMail.html
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Email: {PRICE-at-gw.med.sc.edu} Name: "Bob Price"
Organization: University of South Carolina

Title-Subject: [Filtered] Confocal Workshop

Question: The University of South Carolina Instrumentation Resource
Facility and the South Carolina EPSCoR (NSF) and INBRE (NIH) programs
will be hosting a hands on workshop in Basic Confocal Microscopy from
June 18-21. Full details concerning the workshop and registration
information can be found at
http://www.scepscor.org/outreach/workshops/confocal-microscopy/home.html
The workshop will consist of both lectures and laboratory sessions and
is directed towards beginning and intermediate level users of confocal
microscopy. Topics covered will include the basics of fluorescence and
selection of probes, specimen fixation and staining, proper set up of
operating parameters for collection of images, composition of digital
confocal images, the use of image enhancement and analysis programs such
as Photoshop and Metamorph for confocal images, and the use of 3-D
reconstruction programs such as AMIRA.
Instructors for the workshop will include Dr. Jay Jerome from Vanderbilt
University, Dr. John Mackenzie from North Carolina State University, Dr.
Tom Trusk from the Medical University of South Carolina, and Drs. Bob
Price and John Fuseler from the USC School of Medicine.
A variety of confocal microscopes including the BD CARV spinning disk,
Leica, Nikon, Olympus, and Zeiss systems are scheduled to be on hand for
the laboratory sessions. Applications experts from each of the companies
will also be on hand for discussion of their specific systems.
Participants are encouraged to bring their own specimens for sample
preparation and imaging sessions, but a variety of cell culture and
tissue sections will also be available for laboratory sessions on
fluorescent staining and imaging.
For further information or questions please contact Bob Price
(Price-at-med.sc.edu)
Workshop on Basic Confocal Microscopy
Monday June 18, 2007
8:30-9:00 Registration and Continental Breakfast, Bldg 1, Room B59 USC
School of Medicine
9:00-9:15 Welcome and Logistics
9:15-10:15 Introduction and Overview of Confocal Microscopy: Jay Jerome
(Vanderbilt University) and Bob Price (USC School of Medicine)
10:15-10:45 Break and Discussion
10:45-12:00 Basics of Fluorescence, Dye Characteristics: Jerome and Price
12:00-1:00 Lunch (Provided) and discussion
1:00-3:00 Specimen Preparation: Jerome and Price
3:00-3:30 Break and Discussion
3:30-?? Lab * Specimen Preparation and processing:
Processing of own samples or samples will be provided. Fixation through
overnight primary antibody incubation
Dinner on your own

Tuesday June 19, 2007
8:30-9:00 Continental Breakfast * Room B59
9:00-10:00 Lab - Wash specimens and secondary antibody incubation
10:00-10:30 Break and Discussion
10:30-12:00 Components, proper set up of operating parameters, and types
of confocal microscopes: Jerome and Price 12:00-1:30 Lunch (Provided)
and Specimen Processing
1:30-2:30 Digital Images in Confocal Microscopy * Jerome and Price
2:30-4:00 Lab * finish specimen processing
4:00-6:00 Time on Instruments (BD CARV, Leica, Nikon, Olympus, Zeiss
systems are scheduled to be available)
Dinner on your own

Wednesday June 20, 2007
8:30-9:00 Continental Breakfast * Room B59
9:00-12:00 Photoshop, etc with confocal images (John Mackenzie * North
Carolina State University)
12:00-1:00 Lunch
1:00-5:00 Time on Confocal Instruments and Software
6:00-?? Reception on Lake Murray

Thursday June 21, 2007
8:30-9:00 Continental Breakfast * Room B59
9:00-11:00 3-D reconstruction of confocal data sets with AMIRA (Tom
Trusk * Medical University of South Carolina)
11:00-12:00 Ethics in Use of Confocal Images, Available Resources,
Discussion
12:00 - 4:00 Lunch and additional time on Confocal Instruments and
Software (Photoshop, AMIRA, Metamorph)


Robert L. Price, PhD
Research Professor and Director, Instrumentation Resource Facility
School of Medicine, USC
Bldg 1 Room B60
6439 Garner's Ferry Road
Columbia, SC 29208

Fax: 803-733-1533
Telephone: 803-733-3392



---------------------------------------------------------------------------


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From: Naomi_McCallum-at-health.qld.gov.au
Date: Sun, 11 Dec 2011 18:38:39 -0600
Subject: [Microscopy] Re: clinical programs for EM proficiency

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Cathy

I was also looking recently to see what programs are available world wide and had the same difficulty finding such programs. It appears that the MSA provides Certification of Technologist(Scientists) in Biological TEM but I do not believe that this would meet the requirement that the CAP accreditation is referring to.

Here in Australia, this accreditation requirement is meet by our laboratories through enrolment in the Transmission Electron Microscopy Module of the Royal College of Pathologists Australasia Anatomical Pathology Quality Assurance Program. This is proficiency program for laboratories. To quote the website,"Enrolment in this module provides the participant with up to four cases, both technical and diagnostic in the area of Transmission Electron Microscopy, with emphasis on renal pathology." I understand that there are a number of participants from outside Australia.

I have copied this response to the organisers who may be able to forward some further info to you, otherwise go to www.rcpaqapa.netcore.com.au/cgi-bin/site/wrapper.pl?c1=Program. A similar program was running in the UK but I don't think it has continued.

I do not yet know what is available in Europe, perhaps someone in that region could kindly let us know.

Hope this helps,
Naomi
Pathology Queensland,
Australia

} } } {oshel1pe-at-cmich.edu} 12/10/2011 2:21 am } } }



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Forwarded from "Ask a Microscopist"
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Please note that I have already suggested going to the MSA
certification website. But: is this sufficient for clinical/pathology
certification in TEM?

} Date: Fri, 9 Dec 2011 08:03:56 -0800
} From: {AssociationManagement-at-microscopy.org}
} Reply-To: Cathy Kuehner BEMT/MSA {Cathy.Kuehner-at-hcmed.org}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Friday, December 09,
} 2011 at 08:03:55 AM.
}
} realname - Cathy Kuehner BEMT/MSA
} Email - Cathy.Kuehner-at-hcmed.org
} ORGANIZATION - Hennepin Co Medical Center
} LOCATION - Minneapolis, Mn 55404, USA
} SUBJECT_OF_QUESTION - Proficiency testing
} QUESTION - The clinical/patholgy labs at our institution are
} accredited by the College of American Pathologists.
} For our next inspection CAP states that all accredited labs must
} participate in a proficiency program.
} We are having a difficult time finding a proficiency program for
} TEM. CAP does not have program for EM.
} Do know know how other diagnostic labs deal with this issue?


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From: peter.heimann-at-uni-bielefeld.de
Date: Mon, 12 Dec 2011 09:50:14 -0600
Subject: [Microscopy] glutaraldehyde question to users in Germany or the EU (european

Contents Retrieved from Microscopy Listserver Archives
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=} glutaraldehyde EM-grade (highest purity)

Dear colleagues (preferrably in Germany),

my stock of glutaraldehyde for electron microscopy has run out and I
have to perform fixation for EM in time, however, the glutaraldehyde
EM-grade (highest purity) I use is not available from the producer SERVA
(SERVA order no 23114; 25% glutaraldehyde) at the moment and the
EM-suppliers can't help either.

Can anybody borrow me around 50 ml of unopened SERVA 23114
glutaraldehyde within the next days ?
or, if having experience with the procedure, send me his instruction how
to distill standard glutaraldehyde to highest purity according to
Anderson (2-times-vacuum-double-distilled; active-charcoal-filtered)
(Anderson 1967 J Histochem Cytochem)

greetings,
Peter Heimann

please answer off-line to peter.heimann-at-uni-bielefeld.de


--
====================================================

Dr. Peter Heimann Raum: W7-107 / Tel.: +49-(0)521-106-5628
Universitaet Bielefeld Fax: +49-(0)521-106-5654
"Zellbiologie / Cell Biology" W7-107
33501 Bielefeld, Germanywww.uni-bielefeld.de/biologie/cellbio



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From: jheintz-at-wisc.edu
Date: Mon, 12 Dec 2011 11:03:56 -0600
Subject: [Microscopy] Sectioning Water Soluble Material

Contents Retrieved from Microscopy Listserver Archives
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Hello All,
Recently, a client came in to have some pulp fibers embedded in
polyvinyl alchol(PVOH) sectioned(~70nm). The ultimate goal is to have
the samples viewed using a TEM. The problem, PVOH is soluble in water.
Does anyone have experience sectioning PVOH? Are there any liquids I
could substitute for water to fill up the trough on my diamond knife?
Any help will be greatly appreciated.

-Joe

--
Joseph Heintz
Lab/BBPIC Manager
University of Wisconsin-Madison
Room 1048, Animal Sciences Building
1675 Observatory Dr.
Madison, WI 53706
608.263.4162

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 12 Dec 2011 11:34:19 -0600
Subject: [Microscopy] viaWWW:H7500 OBJ aperture

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Email: wadowska-at-upei.ca Name: Dorota Wadowska

Organization: Atlantic Veterinary College at UPEI

Title-Subject: [Filtered] H7500 OBJ aperture

Message: Hi,
I am looking for a supplier of objective lens aperture strip for H 7500.
Hitachi sent me a price quote which seems to me too high. We had an
alternate source but the quality of a strip was not satisfactory. If you
know of a supplier who asks for a reasonable price and the quality is
not compromised please let me know.
Thank you Dorota
Login Host: 137.149.102.148
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From: hyi-at-emory.edu
Date: Mon, 12 Dec 2011 12:05:22 -0600
Subject: [Microscopy] Re: viaWWW:H7500 OBJ aperture

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Dorota:

We have used the obj aperture strips from the third party before. Yes,
they were not good in quality (it was possible that we just had back
luck). We then purchased from Hitachi a custom-made aperture strip that
has three 20-micron and one 50-micron apertures since we usually do not
use larger apertures on this microscope anyway. The total cost was still
high but we will be able to use all apertures. Hope this helps. Thank
you.

Hong

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From: vray-at-partbeamsystech.com
Date: Mon, 12 Dec 2011 12:05:56 -0600
Subject: [Microscopy] Re: viaWWW:H7500 OBJ aperture

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Dorota,

We supply aperture bars, strips, and other consumables for Micrion and
FEI FIBs and SEMs, and I would be more then happy to work with you on
developing a replacement aperture strip for the H7500.

Feel free to contact me offline if you would like to explore this
possibility.

Best Wishes :)
Valery Ray
=================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844 USA
Phone: +1-978-296-5063 - leave a message with call-back number
US Mobile: +1-978-305-0479
Skype: pbstmeo
E-mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com

On 12/12/2011 12:34 PM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Email: wadowska-at-upei.ca Name: Dorota Wadowska
}
} Organization: Atlantic Veterinary College at UPEI
}
} Title-Subject: [Filtered] H7500 OBJ aperture
}
} Message: Hi,
} I am looking for a supplier of objective lens aperture strip for H 7500.
} Hitachi sent me a price quote which seems to me too high. We had an
} alternate source but the quality of a strip was not satisfactory. If you
} know of a supplier who asks for a reasonable price and the quality is
} not compromised please let me know.
} Thank you Dorota
} Login Host: 137.149.102.148
} ---------------------------------------------------------------------------
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From: cooke-at-jhmi.edu
Date: Mon, 12 Dec 2011 14:06:08 -0600
Subject: [Microscopy] Hiraoka Staining Kits

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello:

Does anyone know who supplies Hiraoka Staining Kits in the US for staining
EM grids? Polysciences and EMS have discontinued selling them.

Thanks,

Carol

--
Carol Cooke
Electron Microscope Lab Manager
Johns Hopkins University
Neurology-Peripheral Nerve Division
Pathology-537
600 N. Wolfe Street
Baltimore,MD 21287
Lab Phone 410-955-1420
Office Phone 410-955-1442

Carol Cooke
Electron Microscope Lab Manager
Johns Hopkins University
Neurology-Peripheral Nerve Division
Pathology-537
600 N. Wolfe Street
Baltimore,MD 21287
Lab Phone 410-955-1420
Office Phone 410-955-1442



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From: jehrman-at-mta.ca
Date: Mon, 12 Dec 2011 14:17:54 -0600
Subject: [Microscopy] oily residue in chiller tank

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings listers,

Lately I've noticed a very thin film of clear, oily residue floating on
top of the water reservoir in my Haskris chiller that services the SEM
and at times the vacuum evaporator. It returns a few days after changing
the water. Everything else seems to be OK - flow, temperature, noises,
cycling, etc. The sight glass on the refrigeration system is clear - no
bubbles or condensation.

For several years I ran the system with 10% ethylene glycol as
recommended by Haskris. I got tired of disposing of this so I switched
to bleach a few years ago and haven't noticed this residue until
recently. I'm wondering if the residue isn't simply residual glycol
leaching out of the water lines? I find it strange that it would appear
so long after switching away from glycol...

Any past experience with such issues would be greatly appreciated.

Cheers,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

Bozone (n.): The substance surrounding
stupid people that stops bright ideas
from penetrating. The bozone layer,
unfortunately, shows little sign of
breaking down in the near future.


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From: Naomi_McCallum-at-health.qld.gov.au
Date: Mon, 12 Dec 2011 17:34:01 -0600
Subject: Re: [Microscopy] clinical programs for EM proficiency

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Good Morning

Below is further information from the convenor of the RCPA Quality
Assurance Program for those who may be interested.

Kind regards
Naomi

} } } "Stirling, John (Health)" {John.Stirling-at-health.sa.gov.au}
12/12/2011 1:55 pm } } }

Hi Folks - I believe that the RCPA TEM QAP is the only external program
there is for diagnostic TEM – diagnostic EM is one of the anatomical
pathology modules.
TRANSMISSION ELECTRON MICROSCOPY
Enrolment in this module provides the participant with up to four
cases, both technical and diagnostic in the area of Transmission
Electron Microscopy, with emphasis on renal pathology.
One technical case is a request for a submission of electron
micrographs of a specified clinical nature.
Assessment results and reports of results containing an analysis of
participants' responses are made available on the website and sent to
participants after each survey.

See ‘program’ then scroll down:

http://www.rcpaqapa.netcore.com.au (
http://www.rcpaqapa.netcore.com.au/ )

ACEM in the UK used to run a program for members but this was run by
volunteers and I don’t think that this would count as far as
accreditation is concerned – I don’t know if this is still running
– see the ACEM web page for contacts:

http://www.acem.org.uk/


There is a Veterans Affairs EM program in the US but I presume that
this is only open to units that service the VHA. See:

http://www.va.gov/DIAGNOSTICEM/index.asp

VHA National EM Program Contacts

Contact Information
Telephone: 919-286-6925 or 919-286-0411 ext. 6648 or ext. 5218

FAX: 919-286-6818
Postal address
Diagnostic Electron Microscopy Program
John D. Shelburne, M.D., Ph.D.
P&LMS (113)
508 Fulton Street
Durham, NC 27705

Electronic mail
General Information: Edoris.LeFurgey-at-va.gov
Webmaster: Edoris.LeFurgey-at-va.gov
E-Mail to: John Shelburne-at-va.gov


I think there have also been programs for speciality areas like
virology (eg. the UK in the mid 1980s) and particulates (asbestos etc)
but again these don’t really apply to diagnostics and I don’t know
if any of them are currently active.

I am the convenor for the RCPA program and it is open to all – new
participants are welcome. We currently have ~26 labs enrolled in SE Asia
and Europe. Please contact Erin Little or the RCPA QAP office through
the website for details of fees etc. If US labs have specific needs then
we could discuss these and possibly tailor the program to suit – we
are always open to new ideas for content etc so suggestions are
welcome.

Best wishes – John

CC Erin Little RCPA



John W Stirling BSc(Hons), MLett, AFRCPA, M-AIMS, FRMS

Head of Unit - The Centre for Ultrastructural Pathology
SA Pathology


E john.stirling-at-health.sa.gov.au
T 61-8-8222 3941 (office)
T 61-8-8222 3202 (laboratory)
F 61-8-8222 3204 (Surgical Pathology)

www.sapathology.sa.gov.au

The Centre for Ultrastructural Pathology
Surgical Pathology - SA Pathology (RAH)
Frome Road
PO Box 14
Rundle Mall
Adelaide SA 5000
AUSTRALIA

Quality Pathology supporting Training and Research

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-----Original Message-----
X-from: Naomi McCallum [mailto:Naomi_McCallum-at-health.qld.gov.au]
Sent: Monday, 12 December 2011 11:08
To: oshel1pe-at-cmich.edu
Cc: Microscopy-at-microscopy.com

***************************************************************************************
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Please note that I have already suggested going to the MSA
certification website. But: is this sufficient for clinical/pathology
certification in TEM?

} Date: Fri, 9 Dec 2011 08:03:56 -0800
} From: {AssociationManagement-at-microscopy.org}
} Reply-To: Cathy Kuehner BEMT/MSA {Cathy.Kuehner-at-hcmed.org}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Friday, December 09,
} 2011 at 08:03:55 AM.
}
} realname - Cathy Kuehner BEMT/MSA
} Email - Cathy.Kuehner-at-hcmed.org
} ORGANIZATION - Hennepin Co Medical Center
} LOCATION - Minneapolis, Mn 55404, USA
} SUBJECT_OF_QUESTION - Proficiency testing
} QUESTION - The clinical/patholgy labs at our institution are
} accredited by the College of American Pathologists.
} For our next inspection CAP states that all accredited labs must
} participate in a proficiency program.
} We are having a difficult time finding a proficiency program for
} TEM. CAP does not have program for EM.
} Do know know how other diagnostic labs deal with this issue?


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 13 Dec 2011 10:18:15 -0600
Subject: [Microscopy] viaWWW:UA stain on DNA nanoparticles for TEM imaging

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This Question/Comment was submitted to the Microscopy Listserver
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Email: tchou-at-stevens.edu Name: Alex Chou

Organization: Stevens Tech

Title-Subject: [Filtered] UA stain on DNA nanoparticles for TEM imaging

Message: We are trying to image DNA nanoparticles in TEM via UA
staining. It turns out the DNA particles aggregated heavily via the UA
solution I made out of the regular DI water. According to my
collaborator, the UA solution I made has PH ~ 3 which causes the
nano-particles stick together. We tried to adjust the PH, but UA
solution starts to show sign of precipitation sooner it reaches to PH
~6. But, we really need something that has PH around 7 to 8! So, the
questions are:

1. is there a way to adjust UA solution to PH around 7 to 8?

2. or, is there another stain solution that has PH ~ 7 to 8 we can used
for imaging DNA structures?

Thanks,

Alex

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From: jheintz-at-wisc.edu
Date: Tue, 13 Dec 2011 10:24:28 -0600
Subject: [Microscopy] Sectioning Water Soluble Material Summary

Contents Retrieved from Microscopy Listserver Archives
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Hello All,
I've had a request to share a summary of the responses I have
received, so here are two responses that sum up all the responses I
have gathered:

- Our go to for that kind of sectioning would normally be a dry-Cryo
technique.You can try sectioning that material with polyethylene
glycol in your boat, although I suspect that PVA is also solvable in
PEG. PEG is also a nasty bit of business for your diamonds, so I
wouldn't use your best.

-Any chance you could have access to an ultramicrotome with a cryo
attachment? You may have to play with the temperature, but it would
basically be like dry-sectioning OCT (which is PVA + ethylene glycol +
"nonreactive ingredients")in a regular cryostat.

Thanks to all who supplied suggestions!

-Joe

--
Joseph Heintz
Lab/BBPIC Manager
University of Wisconsin-Madison
Room 1048, Animal Sciences Building
1675 Observatory Dr.
Madison, WI 53706
608.263.4162

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From: oshel1pe-at-cmich.edu
Date: Tue, 13 Dec 2011 10:28:05 -0600
Subject: [Microscopy] Re: viaWWW:UA stain on DNA nanoparticles for TEM

Contents Retrieved from Microscopy Listserver Archives
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Alex,

Do you need to positively stain the DNA, or are you doing a negative
stain? If a negative stain, try phosphotungstic acid - that can be
adjusted to pH 8.

Phil

} Email: Name: Alex Chou
}
} Organization: Stevens Tech
}
} Title-Subject: [Filtered] UA stain on DNA nanoparticles for TEM imaging
}
} Message: We are trying to image DNA nanoparticles in TEM via UA
} staining. It turns out the DNA particles aggregated heavily via the UA
} solution I made out of the regular DI water. According to my
} collaborator, the UA solution I made has PH ~ 3 which causes the
} nano-particles stick together. We tried to adjust the PH, but UA
} solution starts to show sign of precipitation sooner it reaches to PH
} ~6. But, we really need something that has PH around 7 to 8! So, the
} questions are:
}
} 1. is there a way to adjust UA solution to PH around 7 to 8?
}
} 2. or, is there another stain solution that has PH ~ 7 to 8 we can used
} for imaging DNA structures?
}
} Thanks,
}
} Alex

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: oshel1pe-at-cmich.edu
Date: Tue, 13 Dec 2011 11:06:25 -0600
Subject: [Microscopy] Monocular dissecting 'scope for elementary school

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

This should fit in with the current thread about microscopes for children.
Please note that it is for a specifc recommendation of brand for an
elementary school.

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} Date: Tue, 13 Dec 2011 08:58:19 -0800
} Reply-To: Jennifer Buchanan {jen.buchanan-at-dmr.ms.gov}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Tuesday, December 13,
} 2011 at 08:58:18 AM.
}
} realname - Jennifer Buchanan
} Email - jen.buchanan-at-dmr.ms.gov
} ORGANIZATION - Grand Bay National Estuarine Research Reserve
} EDUCATION - K-8 Grade Grammar School
} QUESTION - I just read on this site that a monocular scope is better
} for younger children. I have a small grant to buy some microscopes
} for a local elementary school that is setting up a science lab. I
} would like a recommendation for a monocular dissecting scope with
} LED and rechargeable batteries. Any suggestions?
}
--

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From: FMonson-at-wcupa.edu
Date: Tue, 13 Dec 2011 14:11:45 -0600
Subject: [Microscopy] Monocular dissecting 'scope for elementary school

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

While I do not challenge the idea that for general use, a monocular microscope is better for youngsters. Most binocular scopes are designed for those of us with 'fatter' heads with larger interpupliary measurements. A dissecting scope, however, by virtue of its functional appellation is designed to provide a holistic image to the operator in order to facilitate 'dissection'[pronounced: 'dis---section' NOT "di(bi)---section," please].

Since most children do not yet have 'fat' heads, it might be more productive for those lessons requiring low to moderate magnification for students to be introduced to 'microscopy' with simple lenses and loupes of various powers up to 20x. In this manner, the users will be optically relaxed during exercises when using magnifiers. One does not have to use 'monster' mags to teach the concepts of 'simple' microscopy. For dissections, one should be able to use an illuminated magnifier on a stand or goose-neck to enhance the dissection process for small specimens whether plant or animal or fossil.

While a student in middle school may be excited to be in the presence of a microscope with magnification between 100-1000x, the learning comes from simple exercises with grampa's magnifier and a newspaper image. "I see dots, Grampa!"

When teaching microscopy, one must remember to mention the preparation of the specimen.
E.g., "Class! That slide has two pieces of liver on it. One from an elephant and the other from a mouse. Can you distinguish one from the other? Does one have really big cells and the other really tiny ones? Ah, you noticed!!! One of the two sections has a smooth 'microscopic' boundary while the other does not, and you conclude that the former is from the mouse. Wonderful!!!! Will you bet your lunch on that?"

Happy/Merry Holidays/Christmas,

Fred Monson

Frederick C. Monson, PhD
Technical Director
Center for Microanalysis and Imaging, Research and Training (CMIRT)
Schmucker Science Center South
West Chester University, West Chester, PA 19383
610-738-0437

Home Page: http://cmirt.wcupa.edu
Scheduler: http://cmirt.wcupa.edu/cgi-bin/ureserve_gold.pl

If one looks long enough, one may actually see something frozen in time that flashes one's mind to a new state.
1. The day that I asked myself how the hydrogen atom's mass could actually be: 1.0008.
2. The day, while looking at a slide of some tissue, I saw a leukocyte that had been caught sneaking in or out of a capillary: http://www.annualreviews.org/doi/abs/10.1146/annurev-pathol-011110-130224


-----Original Message-----
X-from: oshel1pe-at-cmich.edu [mailto:oshel1pe-at-cmich.edu]
Sent: Tuesday, December 13, 2011 12:13 PM
To: Monson, Frederick

This should fit in with the current thread about microscopes for children.
Please note that it is for a specifc recommendation of brand for an
elementary school.

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} Date: Tue, 13 Dec 2011 08:58:19 -0800
} Reply-To: Jennifer Buchanan {jen.buchanan-at-dmr.ms.gov}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Tuesday, December 13,
} 2011 at 08:58:18 AM.
}
} realname - Jennifer Buchanan
} Email - jen.buchanan-at-dmr.ms.gov
} ORGANIZATION - Grand Bay National Estuarine Research Reserve
} EDUCATION - K-8 Grade Grammar School
} QUESTION - I just read on this site that a monocular scope is better
} for younger children. I have a small grant to buy some microscopes
} for a local elementary school that is setting up a science lab. I
} would like a recommendation for a monocular dissecting scope with
} LED and rechargeable batteries. Any suggestions?
}
--

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18, 37 -- From FMonson-at-wcupa.edu Tue Dec 13 14:11:45 2011
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From: mary.raven-at-lifesci.ucsb.edu
Date: Tue, 13 Dec 2011 18:30:03 -0600
Subject: [Microscopy] TEM: Input on Options for a Biological Core Facility

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Microscopy List

The Setting:
Our biological imaging core has a 13 year old JEOL 1230 TEM microscope
that has been down a substantial amount of time in the last 2 years. I
understand that older versions of TEMs can last much longer than 13
years. However, this instrument was designed in the midst of the analog
and digital transition a "tweener". Apparently the "digital wrapper" is
antiquated despite the column being reasonably modern. When it breaks,
it is difficult to fix. Despite getting our money's worth on the service
contract the extended down time meant we didn't bill for the system.

The Questions:
Has anyone else encountered this tweener syndrome. Should we be
considering replacing the instrument or hoping for the best? Some feel
it is almost all new given the number of parts replaced in the last 2 years.

Could a refurbished system avoiding the digital wrapper issues be a
solution?

Can a FEI T-20 operating at 200Kv serve as the sole Biological TEM
imaging resource? We have access but the instrument is more
complicated, our samples require special preparation on that system and
low magnification images are harder to acquire.

Are there university or private labs that image biological TEM samples
for off-campus users?

I appreciate any input
Thanks
Mary


Mary Raven
Microscopy Facility Director
Neuroscience Research Institute&
Molecular, Cellular& Developmental Biology
Biology 2 Building, room 5173
The University of California
Santa Barbara, CA 93106-5060

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From: kjmorris-at-well.ox.ac.uk
Date: Thu, 15 Dec 2011 04:47:04 -0600
Subject: [Microscopy] Monocular dissecting 'scope for elementary school

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Alex!

UA precipitates at pH} 6, that is right. But that doesn't mean that no UA remained in the solution, it is just saturated!
So the first thing I would do is to filter the UA solution at pH7 (or centrifuge it) and see if it stains. I would bet it does.
I also read that 1% lead perchlorate also stains DNA. It may also precipitate at pH7 but see my first remark.
Another solution would consist in staining at low pH (and thus having aggregation) and then wash and try different techniques to isolate the nanoparticles, like using salt (neutralize electrostatic charges) or sonicate and so on.

Best regards.
Stephane

} Email: Name: Alex Chou
}
} Organization: Stevens Tech
}
} Title-Subject: [Filtered] UA stain on DNA nanoparticles for TEM imaging
}
} Message: We are trying to image DNA nanoparticles in TEM via UA
} staining.  It turns out the DNA particles aggregated heavily via the UA
} solution I made out of the regular DI water.  According to my
} collaborator, the UA solution I made has PH ~ 3 which causes the
} nano-particles stick together.  We tried to adjust the PH, but UA
} solution starts to show sign of precipitation sooner it reaches to PH
} ~6.  But, we really need something that has PH around 7 to 8!  So, the
} questions are:
}
} 1. is there a way to adjust UA solution to PH around 7 to 8?
}
} 2. or, is there another stain solution that has PH ~ 7 to 8 we can used
} for imaging DNA structures?
}
} Thanks,
}
} Alex


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From caromel_mrs.isabella-at-yahoo.com.hk Wed Dec 14 23:06:13 2011
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Hi Jennifer,

Following on from Fred's useful advice, and regarding specific microscopes,
in the UK I would say visit the websites of the national suppliers to
British schools - they know their microscopes, the school market [low
prices], and their user base [the kids]. Professional microscopists just
wouldn't tolerate the kit schools use and so often can't offer much useful
up-to-date advice on particular budget microscope models. In the UK schools
national suppliers would be the likes of:

http://www.gxoptical.com/html/education.html

http://www.brunelmicroscopes.co.uk
http://www.educationalmicroscopes.co.uk/slides.html [The DM1/DM5 microscopes
and a selection of magnifying glasses]

I've found their help lines very useful for general advice of this sort -
although I've used them for teenage secondary school-kids who want decent
microscopes at home, they will be clued up to Primary/Elementary school
needs [although they will probably want to sell you a budget microscope as
well as a quality magnifying glass]. They also offer free demonstrations or
models on approval for assessment at school. So search the US sites for
similar school/home suppliers and they should provide excellent support for
the 'best' microscope for your children's age and price range. eBay is a
very cheap source of decent magnifying glasses - although they might not be
finished as well as more expensive versions.

Our Royal Microscopy Society has microscope loan kits available for Primary
schools to borrow and they subsidise the purchase of microscopes for Primary
schools - they recommend the cheap and basic DM1 x20 monocular microscope
for looking at whole objects [although the similar DM5 has the LED light
source and integral batteries that you require, see:
http://www.educationalmicroscopes.co.uk/dm5.html - although it's incident
(above) not transmission]. Perhaps there's similar discount/loan schemes in
the US. The DM1 can also be fitted with extras like an attachment for a
digital camera. The DM1 is similar to a lab low power stereo [3D]
'dissecting' microscope, but without the 3D effect to make it easier (and
cheaper) for youngsters to use. Compound [looking at glass slides]
microscopes like the Brunel DM1 aren't so good for Elementary school kids,
although perhaps one with a few interesting flat samples might be useful in
the corner for structured demonstrations to small groups from Year 6 [10-11
year olds].

The DM1 is a UK Brunel branded microscope, although in the US the Omano M185
monocular microscope at www.microscope.com looks uncannily similar and
clearly is the same microscope
http://www.microscope.com/omano-om185-monocular-dissecting-microscope-p-414.
html
However I can't find a battery/Led light Brunel DM5 version in the US
[Brunel or microscope.com can probably advise - or you could use a cheap
small bendy stalk mains/12v halogen desk light, dropping the bulb power from
20w to 10w]. There's also http://schoolmicroscope.com, and
http://www.dissectingmicroscope.com/important-features-to-look-for-in-a-qual
ity-dissecting-microscope.html but I cant find the DM5 equivalent there
either.

Youngsters [under 10s] often have real problems using optical technology
designed for adults, and it's not just binocular eyepieces - give then a
digital SLR or compact camera and invariably the photos will be blurred and
useless, even with 1 to 1 adult supervision. Looking down a microscope they
can have trouble finding the focus, even with a monocular microscope, and
will often tell you they see something when they can't [probably in an
attempt to get rid of you] - although when their face lights up you know
they have finally found it.

Personally for home use I prefer video PC based microscopes that can be more
fun for younger kids and these can also give them a thing they love - the
photo keepsake to paste into their notebooks. Disadvantages: adults frown on
the often very poor image quality, they will need full adult supervision or
a demonstration unless ruggedised, and the CMOS chips/software rapidly dates
[no problem for home use as your kids get bored with them very quickly once
they have tried everything/done everything, but at school you want them to
last for the next few batches of kids coming along]. The most successful
video microscope systems for kids under 10 I have seen in UK museum and
national science centres are based around expensive ruggedised [Perspex
shielded] CCTV video camera microscopes with simple focussing. There are PC
USB2 or CCTV based cameras you can add to microscopes, although they require
a PC/TV and may be only suitable for demos by adults. Plus there's the £300
DinoLite + Stand (never tried the range or the far cheaper, and no doubt far
nastier, £50 generic versions - but these are based on cheap low-res PC
Skype WebCam type camera chips and also may be far too delicate and fiddly
for preteens). There's also the £280 Motic DS300 or DS-2 PC based USB
microscopes, all of which will probably be outside your budget (although one
for a small group in rotation will be more affordable). However the image
quality of the Motic DS300 or DS-2 is little better than the obsolete £80
640x480 pixel Digital Blue QX-5 USB2 microscope (although an updated Digital
Blue QX-7 with 1280x1024 pixels and glass lenses was slated for production
in early 2012 and hopefully will arrive soon).

However video microscopes are a bit of a distraction, so for your Elementary
school classes the Brunel DM1/DM5 (Omano M185) type of microscope is
probably the best option with youngsters, for price, robustness and letting
the kids get involved hands on. Try one with your class on approval if you
can.

Hope this helps and good luck with the science lab.

Regards

Keith

PS. I have written a simple pdf on buying a cheap microscope for home use
that I regularly update [based on similar discussions many years ago on the
microscopy.com listserver]:
http://www.well.ox.ac.uk/_asset/file/buying-a-cheap-microscope-for-home.pdf
and it has links to other sites specifically discussing microscopes for kids
[for home use] - I will expand it soon to give ideas on unusual samples,
etc.. [more for older kids though].

It's on our "Optical Microscope Enthusiast Sites" section of
http://www.well.ox.ac.uk/external-website-links that has further links to a
few microscopy educational sites

---------------------------------------------------------------------------
Dr Keith J. Morris,
Molecular Cytogenetics and Microscopy Core,
Laboratory 00/069 and 00/070,
The Wellcome Trust Centre for Human Genetics,
Roosevelt Drive,
Oxford  OX3 7BN,
United Kingdom.

Telephone:  +44 (0)1865 287568
Email:  kjmorris-at-well.ox.ac.uk
Web-pages: http://www.well.ox.ac.uk/molecular-cytogenetics-and-microscopy

-----Original Message-----
X-from: oshel1pe-at-cmich.edu [mailto:oshel1pe-at-cmich.edu]
Sent: 13 December 2011 17:11
To: kjmorris-at-well.ox.ac.uk

This should fit in with the current thread about microscopes for children.
Please note that it is for a specifc recommendation of brand for an
elementary school.

****************************************************************************
***********
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
not a member the listserver, and
**any reply should go directly to the poster**
as well as to the list.
Using the "reply" function in your email does *not* send your answer
to the person asking the question.
Please copy their email address from their question.
****************************************************************************
************
} Date: Tue, 13 Dec 2011 08:58:19 -0800
} Reply-To: Jennifer Buchanan {jen.buchanan-at-dmr.ms.gov}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Tuesday, December 13,
} 2011 at 08:58:18 AM.
}
} realname - Jennifer Buchanan
} Email - jen.buchanan-at-dmr.ms.gov
} ORGANIZATION - Grand Bay National Estuarine Research Reserve
} EDUCATION - K-8 Grade Grammar School
} QUESTION - I just read on this site that a monocular scope is better
} for younger children. I have a small grant to buy some microscopes
} for a local elementary school that is setting up a science lab. I
} would like a recommendation for a monocular dissecting scope with
} LED and rechargeable batteries. Any suggestions?
}
--

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From: kjmorris-at-well.ox.ac.uk
Date: Thu, 15 Dec 2011 04:56:15 -0600
Subject: [Microscopy] Monocular dissecting 'scope for elementary school

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Jennifer,

Sorry I noted an error in the post after sending: The monocular compound
microscope I briefly mentioned is the Brunel RM1 [not DM1] - I should have
said: "The Compound [looking at glass slides] microscopes like the Brunel
RM1 aren't so good for Elementary school kids, although perhaps one with a
few interesting flat samples might be useful in the corner for structured
demonstrations to small groups from Year 6 [10-11 year olds]."

http://www.educationalmicroscopes.co.uk/rm1.html [The RM1]

Regards

Keith

---------------------------------------------------------------------------
Dr Keith J. Morris,
Molecular Cytogenetics and Microscopy Core,
Laboratory 00/069 and 00/070,
The Wellcome Trust Centre for Human Genetics,
Roosevelt Drive,
Oxford  OX3 7BN,
United Kingdom.

Telephone:  +44 (0)1865 287568
Email:  kjmorris-at-well.ox.ac.uk
Web-pages: http://www.well.ox.ac.uk/molecular-cytogenetics-and-microscopy

-----Original Message-----
X-from: Keith Morris [mailto:kjmorris-at-well.ox.ac.uk]
Sent: 15 December 2011 10:47
To: 'microscopy-at-microscopy.com'
Cc: 'jen.buchanan-at-dmr.ms.gov'

This should fit in with the current thread about microscopes for children.
Please note that it is for a specifc recommendation of brand for an
elementary school.

****************************************************************************
***********
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
not a member the listserver, and
**any reply should go directly to the poster**
as well as to the list.
Using the "reply" function in your email does *not* send your answer
to the person asking the question.
Please copy their email address from their question.
****************************************************************************
************
} Date: Tue, 13 Dec 2011 08:58:19 -0800
} Reply-To: Jennifer Buchanan {jen.buchanan-at-dmr.ms.gov}
} To: {oshel1pe-at-cmich.edu}
} Subject: Ask-A-Microscopist
}
} Below is the result of your form, submitted on Tuesday, December 13,
} 2011 at 08:58:18 AM.
}
} realname - Jennifer Buchanan
} Email - jen.buchanan-at-dmr.ms.gov
} ORGANIZATION - Grand Bay National Estuarine Research Reserve
} EDUCATION - K-8 Grade Grammar School
} QUESTION - I just read on this site that a monocular scope is better
} for younger children. I have a small grant to buy some microscopes
} for a local elementary school that is setting up a science lab. I
} would like a recommendation for a monocular dissecting scope with
} LED and rechargeable batteries. Any suggestions?
}
--

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From: schooley-at-mcn.org
Date: Thu, 15 Dec 2011 12:24:58 -0600
Subject: [Microscopy] RE: Monocular dissecting 'scope for elementary school

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Keith Morris's comments are excellent. The
Microscopy Society of America has a similar
outreach program, Project MICRO, and its web page
http://www.microscopy.org/education/projectMICRO
includes very similar advice, a reviewed
booklist, and other resources.. One of MSA's
regional societies (New England) has a few kits
available for loan to teachers within their area.

The 20x monocular dissecting scope that Keith
(and MICRO) recommends is indeed the same scope
as the UK model; the key to look for is "model
185" which seems to remain constant even when the
importer's brand name changes. The price is
$75-85. A nice LED "booklight" is $8.50 on
Amazon. There will be a hands-on workshop for
teachers and meeting attendees at M&M 2012 in
Phoenix next August; it will use this equipment.

As Keith says, understanding the concept of
"focus" isn't intuitive for youngsters. You'll
find good advice on how to teach it in the
booklet "Introducing Pre-Kindergartners to 'The
Private Eye'", published by Private Eye,
www.theprivateeye.com.

Caroline

} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America

--
Caroline Schooley
Project MICRO Coordinator
Microscopy Society of America
45301 Caspar Point Road, Box 117
Caspar, CA 95420
Phone/FAX (707)964-9460
Project MICRO: http://www.microscopy.org/education/projectMICRO


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From: oshel1pe-at-cmich.edu
Date: Thu, 15 Dec 2011 12:59:51 -0600
Subject: [Microscopy] Fwd: CAP certification question

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Forwarded by request.
} Sender: Leona Cohen-Gould {lcgould-at-med.cornell.edu}
} From: Leona Cohen-Gould {lcgould-at-med.cornell.edu}
} Subject: CAP certification question
} Date: Thu, 15 Dec 2011 13:22:07 -0500
}
} I found out more, useful information about the CAP certification
} requirements. This info was provided by a past-president of the
} Renal Pathologists' group.
} Two years ago, in response to concerns voiced by nephrologists over
} who was reading/interpreting the EM and other test results for their
} patients, CAP began to develop guidelines for the certification of
} RENAL PATHOLOGISTS (MDs). The certification process has not yet
} been finalized, but it is known that they do not include the
} technologists preparing the samples.
}
} Thus, CEMT from MSA is good, but not necessarily required by CAP.
}
}
} Lee Cohen-Gould, M.S., C.E.M.T.
} Chair, MSA Certification Board
}
} Sr. Staff Associate in Biochemistry and
} Cell & Developmental Biology
} Director, Electron Microscopy & Histology
} and Optical Microscopy Core Facilities
} Weill Cornell Medical College
}
} lcgould-at-med.cornell.edu
} voice (212)746-6146
} fax (212)746-8175
} http://www.med.cornell.edu/research/rea_sup/
} http://www.cornellbiochem.org
} http://www.cornellcelldevbiology.org
}

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 16 Dec 2011 15:18:51 -0600
Subject: [Microscopy] [Filtered] Re: viaWWW:PTFE Flat Embedding Mold

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Tami,

I missed the temperature for LR White that was suggested. In that I am doing my first exp. With it
in 20 years I am wondering just what temp. is considered good now.

Pat Connelly

=====

Just a quick question: Has anyone used the PTFE flat molds sold by EMS to polymerize LRWhite resin?
I would appreciate if you could share your experience on how well the resin consistently
polymerizes under these conditions (ideal temperature and time of polymerization etc).

Thanks!!

Tami Bogea, PhD
Research Associate
University of British Columbia




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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 16 Dec 2011 15:19:12 -0600
Subject: [Microscopy] [Filtered] Re: viaWWW:UA stain on DNA nanoparticles

Contents Retrieved from Microscopy Listserver Archives
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there are other negative stains. or use low dose (increase contrast in
the tem) and high tilts. more ways to skin the cat.

On Tue, Dec 13, 2011 at 9:28 AM,
{microscopylistserver-noreply-at-microscopy.com} wrote:
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} Title-Subject: [Filtered] UA stain on DNA nanoparticles for TEM imaging
}
} Message: We are trying to image DNA nanoparticles in TEM via UA
} staining. It turns out the DNA particles aggregated heavily via the UA
} solution I made out of the regular DI water. According to my
} collaborator, the UA solution I made has PH ~ 3 which causes the
} nano-particles stick together. We tried to adjust the PH, but UA
} solution starts to show sign of precipitation sooner it reaches to PH
} ~6. But, we really need something that has PH around 7 to 8! So, the
} questions are:
}
} 1. is there a way to adjust UA solution to PH around 7 to 8?
}
} 2. or, is there another stain solution that has PH ~ 7 to 8 we can used
} for imaging DNA structures?
}
} Thanks,
}
} Alex
}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 16 Dec 2011 15:19:25 -0600
Subject: [Microscopy] viaWWW:UA stain on DNA nanoparticles for TEM imaging

Contents Retrieved from Microscopy Listserver Archives
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Try using 2.0% phosphotungstic acid in water, adjust pH to 6 or 7.
Karen Bentley
University of Rochester Medical Center
Rochester, NY

-----Original Message-----
} From: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Tuesday, December 13, 2011 11:26 AM
To: Bentley, Karen

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Email: tchou-at-stevens.edu Name: Alex Chou

Organization: Stevens Tech

Title-Subject: [Filtered] UA stain on DNA nanoparticles for TEM imaging

Message: We are trying to image DNA nanoparticles in TEM via UA staining. It turns out the DNA
particles aggregated heavily via the UA solution I made out of the regular DI water. According to
my collaborator, the UA solution I made has PH ~ 3 which causes the nano-particles stick together.
We tried to adjust the PH, but UA solution starts to show sign of precipitation sooner it reaches to
PH ~6. But, we really need something that has PH around 7 to 8! So, the questions are:

1. is there a way to adjust UA solution to PH around 7 to 8?

2. or, is there another stain solution that has PH ~ 7 to 8 we can used for imaging DNA structures?

Thanks,

Alex

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 16 Dec 2011 15:19:42 -0600
Subject: [Microscopy] [Filtered] Re: viaWWW:UA stain on DNA nanoparticles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Alex,

If you put DNA nanoparticles on the glow discharged carbon membrane first,
then add UA as routine method to do negative staining, I don't think the
nanoparticles would aggregate.

Alice

} From: "microscopylistserver-noreply-at-microscopy.com"
} {microscopylistserver-noreply-at-microscopy.com}
} Reply-To: "microscopylistserver-noreply-at-microscopy.com"
} {microscopylistserver-noreply-at-microscopy.com}
} Date: Tue, 13 Dec 2011 11:32:26 -0500
} To: "Liang, Fengxia" {Fengxia.Liang-at-med.nyu.edu}
} Subject: [Microscopy] viaWWW:UA stain on DNA nanoparticles for TEM imaging
}
}
}
}
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} Email: tchou-at-stevens.edu Name: Alex Chou
}
} Organization: Stevens Tech
}
} Title-Subject: [Filtered] UA stain on DNA nanoparticles for TEM imaging
}
} Message: We are trying to image DNA nanoparticles in TEM via UA
} staining. It turns out the DNA particles aggregated heavily via the UA
} solution I made out of the regular DI water. According to my
} collaborator, the UA solution I made has PH ~ 3 which causes the
} nano-particles stick together. We tried to adjust the PH, but UA
} solution starts to show sign of precipitation sooner it reaches to PH
} ~6. But, we really need something that has PH around 7 to 8! So, the
} questions are:
}
} 1. is there a way to adjust UA solution to PH around 7 to 8?
}
} 2. or, is there another stain solution that has PH ~ 7 to 8 we can used
} for imaging DNA structures?
}
} Thanks,
}
} Alex
}
} Login Host: 155.246.236.151
} ---------------------------------------------------------------------------
}
}
}
} ==============================Original Headers==============================
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} 2011
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 16 Dec 2011 15:20:13 -0600
Subject: [Microscopy] [Filtered] Re: viaWWW:Amray 1860 FE Scanning Electron

Contents Retrieved from Microscopy Listserver Archives
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Hi Steve,

There is still one company I know that supports the AMRAY line of SEM's,
SEMTechSolutions http://www.semtechsolutions.com/. This company was founded
by ex-AMRAY employees and still offers sales and support for AMRAY's. I had
two AMRAYS before I retired and after AMRAY left the analytical SEM market I
used them frequently when I needed service or parts.

Contact Jim Peterson at jimp-at-semtechsolutions.com for more information.

I have no vested interest in in SEMTechSolutions.

Good Luck,
Lou


On 12/9/11 3:04 AM, "microscopylistserver-noreply-at-microscopy.com"
{microscopylistserver-noreply-at-microscopy.com} wrote:

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} Title-Subject: [Filtered] Amray 1860 FE Scanning Electron Microscope support
}
} Message: I'm thinking of purchasing a used Amray 1860 FE Scanning
} Electron Microscope but I am concerned that there may not be support or
} parts still available for these systems. The system is in full working
} condition right now and can be demonstrated for performance.
} However, I would be interested to know what kind of support still exists
} for repair of these systems along with information on the availability
} of parts.
} Many Thanks,
} Steve
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 16 Dec 2011 15:22:20 -0600
Subject: [Microscopy] viaWWW:Olympus BX 60 microcsope troubleshooting

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This Question/Comment was submitted to the Microscopy Listserver
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Email: mlibbee-at-gmail.com Name: Marissa Mancuso

Organization: LBL

Title-Subject: [Filtered] Olympus BX 60 microcsope troubleshooting

Message: Hello Listers

I can't figure out why I am not able to image in darkfield mode with our BX60 Olympus microscope.
I've followed the steps outlined in the manual a few times and think that the 'cube selector' or
Brightfield/Darkfield Vertical Illuminator Attachment is out of alignment. During the final step, I
can briefly see the image of the DF insert on the sample: central light is blocked and the oblique
angles of light pass quickly over the surface of the sample. If anyone has attempted to
correct/align the mirror cube location for proper light path selection, will you please contact me
about your recommendations and experience?

Thanks
marissa

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 17 Dec 2011 11:00:12 -0600
Subject: [Microscopy] [Filtered] Re: viaWWW:PTFE Flat Embedding Mold

Contents Retrieved from Microscopy Listserver Archives
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LR white has to be polymerized in beem capsules or gelatin capsules (air tight) and at 45degrees if
using for IMMUNO EM. It would polymerize even at higher otherwise.


Shashi Singh
Scientist Centre for Cellular and Molecular Biology
Hyderabad-500 007
INDIA
PH-91-40-27192575,27192764
FAX-91-40-27160591, 27160311
Mobile- 91-98660-98626

X-from: "microscopylistserver-noreply-at-microscopy.com" {microscopylistserver-noreply-at-microscopy.com}
To: Shashis_99-at-yahoo.com Sent: Saturday, December 17, 2011 2:52 AM

Tami,

I missed the temperature for LR White that was suggested. In that I am doing my first exp. With it
in 20 years I am wondering just what temp. is considered good now.

Pat Connelly

=====

Just a quick question: Has anyone used the PTFE flat molds sold by EMS to polymerize LRWhite resin?
I would appreciate if you could share your experience on how well the resin consistently
polymerizes under these conditions (ideal temperature and time of polymerization etc).

Thanks!!

Tami Bogea, PhD
Research Associate
University of British Columbia




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From: ZZhang-at-uwyo.edu
Date: Sat, 17 Dec 2011 17:46:17 -0600
Subject: [Microscopy] Plenoptics

Contents Retrieved from Microscopy Listserver Archives
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Hi list:


Just came across an article on Popular Science, describing the plenoptics camera, which has an array of micro-lenses in front of the image sensor for 3D imaging as well "perfect focusing".


http://www.popsci.com/gadgets/article/2011-05/cameras-40000-lenses-help-salvage-blurry-images


Does anyone know if this technology have been used on any kind of microscopes?


Merry Christmas!


Zhaojie


Zhaojie Zhang, Ph.D.
Director, Jenkins Microscopy Facility
University of Wyoming

==============================Original Headers==============================
13, 28 -- From ZZhang-at-uwyo.edu Sat Dec 17 17:46:17 2011
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From: rosemary.white-at-csiro.au
Date: Sat, 17 Dec 2011 20:28:37 -0600
Subject: [Microscopy] Re: viaWWW:PTFE Flat Embedding

Contents Retrieved from Microscopy Listserver Archives
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We routinely polymerise LRWhite at about 60 C under nitrogen gas so no
need to seal the containers. A 2-3 mm deep mould of medium grade resin
takes about 90 min to polymerise this way when it's an aluminium mould.
When we use any of the plastic moulds it takes about double this time to
polymerise, I don't really understand why though could speculate... Resin
polymerised at this temperature is fine for immuno work, at least in plant
material. You can also polymerise it under UV either sealed or under
nitrogen, but our OHS people prefer us not to use UV these days.
cheers,

Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
F 61 2 6246 5334
E rosemary.white-at-csiro.au




On 18/12/11 4:07 AM, "microscopylistserver-noreply-at-microscopy.com"
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From: germpore-at-sonic.net
Date: Sat, 17 Dec 2011 23:38:59 -0600
Subject: [Microscopy] Re: Plenoptics

Contents Retrieved from Microscopy Listserver Archives
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Yes, it has. In fact, a few weeks ago, I gave a talk on the subject to
the advanced microscopy class in which I'm instructional assistant.
The Stanford Computer Graphics Lab, which also developed the prototype
for the plenoptic Lytro consumer camera, has had a light field
microscope in development for several years now:

http://www.graphics.stanford.edu/projects/lfmicroscope/
http://www.graphics.stanford.edu/papers/lfmicroscope/lfmicroscope-sig06-mpeg4.mov

The light field module is incorporated into the light path between the
objective and the camera rather than into the camera itself. I'm not
sure if the Raytrix camera has ever been used on an unmodified
microscope, but considering that an optical tube presents a focal
plane and multiple planes of out of focus light, I don't see why this
wouldn't work. Then again, this is probably sub-optimal for light
field microscopy, as the Stanford lab has gone through the trouble of
putting together a full light field microscope design, even if is a
fairly simple modification of an regular transmitted light/
fluorescence microscope. If you look at the other pages on the
Stanford site, they note that they've added a light field illumination
system to the design as well:

http://www.graphics.stanford.edu/projects/lfmicroscope/2008.html

Light field microscopes use 3D deconvolution to get a fully focused
image, which surprisingly works well with 4D light field information.
In fact, because of z-resolution limitations, the ray tracing software
used with light field cameras like the Lytro does not work in light
field microscopy.

The Stanford light field camera and microscope design is limited in
terms of spatial resolution as well, however, the light field camera
project at Adobe claims to have overcome this limitation:

http://www.tgeorgiev.net/
http://www.youtube.com/watch?v=Z7SN7808ANI

The Adobe project has mostly worked on cameras, but they have a patent
published for a plenoptic objective lens:

http://www.google.com/patents/US7872796.pdf

In addition, Rudolf Oldenberg of MBL has published on a polarized
light field microscope design he's developed. Poster here:

http://www.focusonmicroscopy.org/2009/PDF/359_Oldenbourg.pdf

This is a very interesting and promising technology, and I'm anxious
to see how it develops. I hope to be able to try this technology out
for myself inside of a few years.

Peter G. Werner
Program Assistant, Merritt College Microscopy Program


On Dec 17, 2011, at 3:59 PM, ZZhang-at-uwyo.edu wrote:

} Hi list:
}
}
} Just came across an article on Popular Science, describing the
} plenoptics camera, which has an array of micro-lenses in front of
} the image sensor for 3D imaging as well "perfect focusing".
}
}
} http://www.popsci.com/gadgets/article/2011-05/cameras-40000-lenses-help-salvage-blurry-images
}
}
} Does anyone know if this technology have been used on any kind of
} microscopes?
}
}
} Merry Christmas!
}
}
} Zhaojie
}
}
} Zhaojie Zhang, Ph.D.
} Director, Jenkins Microscopy Facility
} University of Wyoming

==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 18 Dec 2011 07:54:03 -0600
Subject: [Microscopy] [Filtered] Re: viaWWW:PTFE Flat Embedding Mold

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

LR White can also be polymerized for immunoEM down to -20 C if you use the Cold Accelerator. The
manufacturer recommends ~1.5 ul per ml resin, but I've found this leads to inadequate polymerization
at -20 C. A more effective concentration is 5-7.5 ul/ml resin. Allow to polymerize overnight at
-20 C then put on your bench top and let warm to room temp. Polymerization of LR White is always
improved if the resin is degassed for ~ 10 min under at least house vacuum before use. If you are
cooling the resin for low temp polymerization, also allow the resin to cool to -20 C before adding
the Cold Accelerator.
Richard Fetter
Janelia Farm Research Campus
HHMI


________________________________________
} From: microscopylistserver-noreply-at-microscopy.com [microscopylistserver-noreply-at-microscopy.com]
Sent: Saturday, December 17, 2011 12:09 PM
To: Fetter, Richard

LR white has to be polymerized in beem capsules or gelatin capsules (air tight) and at 45degrees if
using for IMMUNO EM. It would polymerize even at higher otherwise.


Shashi Singh
Scientist Centre for Cellular and Molecular Biology
Hyderabad-500 007
INDIA
PH-91-40-27192575,27192764
FAX-91-40-27160591, 27160311
Mobile- 91-98660-98626

X-from: "microscopylistserver-noreply-at-microscopy.com" {microscopylistserver-noreply-at-microscopy.com}
To: Shashis_99-at-yahoo.com Sent: Saturday, December 17, 2011 2:52 AM

Tami,

I missed the temperature for LR White that was suggested. In that I am doing my first exp. With it
in 20 years I am wondering just what temp. is considered good now.

Pat Connelly

=====

Just a quick question: Has anyone used the PTFE flat molds sold by EMS to polymerize LRWhite resin?
I would appreciate if you could share your experience on how well the resin consistently
polymerizes under these conditions (ideal temperature and time of polymerization etc).

Thanks!!

Tami Bogea, PhD
Research Associate
University of British Columbia




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From: germpore-at-sonic.net
Date: Mon, 19 Dec 2011 00:02:07 -0600
Subject: [Microscopy] Plenoptics: Some Questions

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I was kind of hoping there would be further conversation on the topic
of plenoptic/light-field microscopy, since in spite of having read a
bit about it from various sources, I still have many questions about it.

1) Could somebody provide me with or point me to a good intro to the
concept of "light fields"? (Either web or book source is fine. There's
a Wikipedia article, but I don't think it introduces the concept to
beginners particularly well.) My understanding is that it is a 4-
dimensional or even 5-dimensional model for light that, in addition to
x, y, and z spatial information, also includes one (or sometimes two)
vectors for direction of travel of a photon/light ray. But that's
about the extent of what I understand it to be; I'd love to learn more
about it, but will need to do so from simple geometric optics on up.

2) I've read that light-field microscopes and cameras have not only
spatial resolution, like any optical instrument, but angular
resolution that is inherent to the ability to detect the light field,
and that there's a trade-off between the two. I'm a bit confused by
this, as I've long been taught that spatial resolution is essentially
a function of the angular resolution of a lens system (hence, why the
same size object appears smaller at a greater distance - it intercepts
a smaller angle of the eye's field of view). Any idea how angular and
spatial resolution are differentiated when describing plenoptic sensing?

3) The key component in plenoptic microscopes and cameras is a
microlens array. (Although there are a few alternate plenoptic camera
technologies that use other interference patters to derive angular
information.) Of course, many standard CCDs have microlens arrays
associated with them, designed in such a way as to focus light on the
sensor rather than non-sensing parts of the chip. However, the
microlens array in a light-field sensor is set up in such a way as to
provide angular information. How is this microlens set up different
than a standard CCD microlens and how does this provide angular/4D
information?

4) 4D light-field information is readily focusable using 3D
deconvolution algorithms. I'm not sure why this should be and would
appreciate an explanation. Also, I'm told that the reason 4D ray
tracing algorithms used, for example, in the Lytro camera will not
work with light-field microscopy because optical sections in the
latter are too narrow to provide sufficient angular information to use
such algorithms. Am I correct about this?

5) Has anybody used or heard of a Raytrix light-field camera used as a
camera for an otherwise standard trinocular microscope? If so, did it
work for getting light-field microscope images, or was further
modification of the microscope itself needed? Was deconvolution used
for focusing the image?

A lot of questions, I know, but answers to any of the above would be
greatly appreciated.

Peter G. Werner
Program Assistant, Merritt College Microscopy Program



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From: one_twinklestar-at-yahoo.com.sg
Date: Tue, 20 Dec 2011 19:05:11 -0600
Subject: [Microscopy] About Punching a hole in SiN in TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,  a very good day to all ofyou! Recently a
Professor would like to use the JEOL 2100F 's electron beam ( I am in charge of this TEM) to punch a 2-5nm
hole on the SiN sample or perhaps his sample grid. I would like to ask your kind advices if there is any issue in
letting him to do so such as if removing that amount of SiN might contaminate
the chamber/column? His sample is bought from the commercial SiN grid
(http://www.2spi.com/catalog/grids/silicon-nitride.php#6)
 
Cheers,
Yee Yan
NTU, MSE FACTS


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2, 37 -- From: Tay Yee Yan {one_twinklestar-at-yahoo.com.sg}
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2, 37 -- Subject: About Punching a hole in SiN in TEM
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 20 Dec 2011 23:41:49 -0600
Subject: [Microscopy] viaWWW:High Pressure Freezing

Contents Retrieved from Microscopy Listserver Archives
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This Question/Comment was submitted to the Microscopy Listserver
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Email: meulia.1-at-osu.edu Name: Tea Meulia

Organization: Ohio State University

Title-Subject: [Filtered] High Pressure Freezing
Message: All,

I am applying for funding to acquire HPF instrumentation. I had the opportunity to use the Leica EM
PACT2 and the BalTec HPM100 (now also Leica) instruments, and both these instruments performed
great. However, price is an issue. Are there any other instruments on the market that you could
recommend to me to check out?
Thank you.

Tea Meulia

**********************************************
Tea Meulia MCIC, Director
Plant Pathology, Research Associate Professor
The Ohio State University
1680 Madison Avenue
Wooster Ohio 44691
Office: 330-263-3836
Lab: 330-263-3828
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From: stefan.diller-at-t-online.de
Date: Wed, 21 Dec 2011 00:20:47 -0600
Subject: [Microscopy] Re: viaWWW:High Pressure Freezing

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Tea,
RMC Boeckeler is also in the market for high pressure freezing.
Their site is at: http://www.rmcproducts.com/hpm-010/

Best regards,
Stefan


-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.stefan-diller.com
www.electronmicroscopy.info
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
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} Email: meulia.1-at-osu.edu Name: Tea Meulia
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} Organization: Ohio State University
}
} Title-Subject: [Filtered] High Pressure Freezing
} Message: All,
}
} I am applying for funding to acquire HPF instrumentation. I had the opportunity to use the Leica EM
} PACT2 and the BalTec HPM100 (now also Leica) instruments, and both these instruments performed
} great. However, price is an issue. Are there any other instruments on the market that you could
} recommend to me to check out?
} Thank you.
}
} Tea Meulia
}
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6, 22 -- From stefan.diller-at-t-online.de Wed Dec 21 00:20:46 2011
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From: reinhard.rachel-at-biologie.uni-regensburg.de
Date: Wed, 21 Dec 2011 02:06:47 -0600
Subject: [Microscopy] High Pressure Freezing

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


} I am applying for funding to acquire HPF instrumentation. I had the
} opportunity to use the Leica EM
} PACT2 and the BalTec HPM100 (now also Leica) instruments, and both these
} instruments performed
} great. However, price is an issue. Are there any other instruments on the
} market that you could
} recommend to me to check out?
} Thank you.

and, finally, not only the two mentioned above, and RMC, but also:
Martin Wohlwend. Bifig 14. 9466 Sennwald.
+41 81 759 27 65 (Tel. Geschäft).
+41 81 757 19 24 (Tel. Privat).
martin-wohlwend-at-bluewin.ch
His machine is the compact 01, as far as I know. Probably, I am not up-to-date
about the latest model that he is producing. The best is to contact him
personally.
kind regards,
Reinhard

--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstr. 31
D-93053 Regensburg - Germany
tel +49 941 943 2837, 1720
fax +49 941 943 2868
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

next microscopy conferences:
http://www.emc2012.org.uk/
EMC 2012 in Manchester, UK
http://www.mc2013.de/
MC2013 in Regensburg, Germany


==============================Original Headers==============================
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From: S.Walck-at-cox.net
Date: Wed, 21 Dec 2011 17:25:22 -0600
Subject: [Microscopy] About Punching a hole in SiN in TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Yee Yan,

I saw your post here and I don't know whether the TEM can punch a hole in
the Si3N4 membrane or not. I've never had the opportunity to use such a
grid. I do know that some materials can be made to react on the electron
beam so for the sake of argument, let's say you can do it. Now, I recently
have a lot of spare time on my hands and thought that I would answer your
question with a few back-of-the-envelope calculations just for fun.

OK, there are three thicknesses of Si3N4 grids on the website that you
gave, 20, 30, and 100 nm. (At the bottom of the page) and I'm going to
consider two size holes, 2 nm and 5 nm, the two extremes in your question.
How many molecules of Si3N4 are in those holes that are drilled that would
be deposited onto the TEM holder and chamber walls? The density of Si3N4 is
3.1. The molecular weight is 140.28. How many atoms would stick on the
walls and then how thick would it be? The following are my calculations.

What is the volume of material removed in nm^3? Consider a cylinder with
the height the thickness of the film and the diameter the beam diameter.
Volume of nm^3
Thickness 2nm diameter 5 nm diameter
20 62.8 392.7
30 94.2 589.0
100 314.2 1963.5

What is the volume of material in cm^3?
Volume in cm^3
Thickness 2nm diameter 5 nm diameter
20 6.28E-20 3.93E-19
30 9.42E-20 5.89E-19
100 3.14E-19 1.96E-18

What is the weight of material in g removed?
g of Si3N4
Thickness 2nm 5nm
20 1.95E-19 1.22E-18
30 2.92E-19 1.83E-18
100 9.74E-19 6.09E-18

How many molecules of Si3N4 would be removed?
molecules of Si3N4
Thickness 2nm 5nm
20 8.36E+02 5.23E+03
30 1.25E+03 7.84E+03
100 4.18E+03 2.61E+04

How many atoms from the Si3N4 would be removed and stuck on walls? Consider
perfect stoichiometry and perfect sticking. Simply multiply by 7.
atoms from Si3N4
Thickness 2nm 5nm
20 5.85E+03 3.66E+04
30 8.78E+03 5.49E+04
100 2.93E+04 1.83E+05

Now let's assume that the area that the material will deposit on inside the
TEM is a sphere with a diameter of 1 cm. The sample would be a the center
of this sphere and the material would be deposited on the surface of the
sphere. This would be the surface of everything such as pole pieces, sample
holder, cold fingers, etc. This might be a little big, but not by much
because it assumes and average distance of 5 mm to a surface from the
sample. The area of that sphere is 3.14 cm^2.

How many atoms per square cm is deposited on that spherical surface assuming
perfect stoichiometry and perfect sticking?
atoms/cm2
Thickness 2nm 5nm
20 1.86E+03 1.16E+04
30 2.80E+03 1.75E+04
100 9.32E+03 5.82E+04

The average areal density of any surface is about 5 x 10^15 atoms per cm^2.
How many holes would you have to drill to put one monolayer of atoms from
the Si3N4 membrane on that surface assuming perfect stoichiometry and
perfect sticking?
# of Holes needed for a monolayer of Si3N4
Thickness 2nm 5nm
20 2.68E+12 4.29E+11
30 1.79E+12 2.86E+11
100 5.37E+11 8.59E+10


The short answer is that I think that you are safe if you drill a couple of
holes.


-Scott

Scott D. Walck, Ph.D.
Oceanside, CA 92056

S.Walck-at-cox.net
SWalck65-at-gmail.com

-----Original Message-----
X-from: one_twinklestar-at-yahoo.com.sg [mailto:one_twinklestar-at-yahoo.com.sg]
Sent: Tuesday, December 20, 2011 5:23 PM
To: s.walck-at-cox.net

Dear All,  a very good day to all ofyou! Recently a Professor would like to
use the JEOL 2100F 's electron beam ( I am in charge of this TEM) to punch a
2-5nm hole on the SiN sample or perhaps his sample grid. I would like to ask
your kind advices if there is any issue in letting him to do so such as if
removing that amount of SiN might contaminate the chamber/column? His sample
is bought from the commercial SiN grid
(http://www.2spi.com/catalog/grids/silicon-nitride.php#6)
 
Cheers,
Yee Yan
NTU, MSE FACTS


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From: frank_karl-at-ardl.com
Date: Thu, 22 Dec 2011 07:49:21 -0600
Subject: [Microscopy] interesting article on microscopy of colors

Contents Retrieved from Microscopy Listserver Archives
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Hello Everyone,
Here's a link to a interesting article on light, microstructure and beetles. I'm a WIRED junky and enjoy this website very much. I hope you find the article on colors interesting.

http://www.wired.com/wiredscience/2011/12/diamond-weevil-rainbow-scales/


Stay safe.....................


Frank






Frank Karl
Microscopist
ARDL
2887 Gilchrist Road
Akron, Ohio 44305
330-794-6600



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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 27 Dec 2011 04:47:52 -0600
Subject: [Microscopy] [Filtered] Re: viaWWW:Olympus BX 60 microcsope troubleshooting

Contents Retrieved from Microscopy Listserver Archives
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Hello Merissa,

Make sure that the Aperture Diaphragm underneath the condenser is
completely open!! Olympus' design of this piece is pretty thoughtless in
this regard, as it is decoupled from the rotation of the condenser
inserts... Also make sure that the condenser in setup for Köhler
illumination before you try to image anything.

Good luck!!

Pete

On Fri, December 16, 2011 10:43 pm,
microscopylistserver-noreply-at-microscopy.com wrote:
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| Title-Subject: [Filtered] Olympus BX 60 microcsope troubleshooting
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| I can't figure out why I am not able to image in darkfield mode with our
| BX60 Olympus microscope.
| I've followed the steps outlined in the manual a few times and think that
| the 'cube selector' or
| Brightfield/Darkfield Vertical Illuminator Attachment is out of alignment.
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--
Peter Gabriel Pitrone - TechRMS
Microscopy/Imaging Specialist
Prof. Dr. Pavel Tomancak group
Max Planck Institute for
Molecular Biology and Genetics
Pfotenhauerstr. 108
01307 Dresden

"If a straight line fit is required, obtain only two data points." - Anon.





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From: PhillipsT-at-missouri.edu
Date: Sat, 31 Dec 2011 11:28:03 -0600
Subject: [Microscopy] immunogold labeling of chitosan

Contents Retrieved from Microscopy Listserver Archives
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I was just reading over Beth's protocol and feel compelled to point out two errors so they won't get propagated. She suggests making two 1 M stocks of KH2PO4 and K2HPO4. That seems correct to me. She then says to mix 1.6 ml of one stock and 8.4 mls of the other and dilute to 100 mls with water. I assume the proportions are correct for the desired pH but at this point, one has a 0.1 M stock. When you then add 50 mls of the stock to 450 mls, you do a second 1 + 9 dilution and the phosphate buffer is now 0.01 M (10 mM) and not 500 ml of 0.1 M buffer as the protocol states. Furthermore, the protocol calls for 14.61 g of NaCl in 500 mls final volume. The MW of NaCl is 58.44 so the final concentration of NaCl is 0.25 M (250 mM) and not 500 mM as the protocol states. You may think you are using a high salt concentration but, in fact, it is on the low side of normal isotonicity. I don't mean to pile on here but there is another thing in the protocol that is a widely used convention that should be relegated to the dark ages of alchemy. As a general rule it is not very useful to refer to dilutions of antibodies when the true concentration is often known these days. Almost all monoclonals one purchases these days are at defined concentration. Even many polyclonals are affinity purified. I haven't used a secondary antibody of unknown concentration in over 15 years except for gold particles. Antibody concentrations should ideally be reported as concentrations (micrograms per ml). Generally a concentration of 1-10 ug/ml is considered correct. With gold-labeled secondaries one is still forced to give a dilution but the OD of the starting stock should be given or the number of particles/ml. Centrifuging gold particles must be done very cautiously and the time and g force should be given; the correct parameters are highly dependent on the particle size. Normally when one centrifuges antibodies, the idea is to spin the heck out of solutions and throw away any antibody aggregates that pellet down. With gold particles, th!
e only r
ationale for centrifuging would be to pellet the "good stuff" and discard any free antibody remaining in the supernatant and then re-suspend the pellet. I will defer to Jan Leunissen about whether that is a good idea or not. Sorry to be so critical but I have been a professor teaching undergrads too long to let this slip by. Happy New Year. Tom Phillips



Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: beth-at-plantbio.uga.edu [mailto:beth-at-plantbio.uga.edu]
Sent: Friday, December 02, 2011 8:53 AM
To: Phillips, Thomas E.

HI Monica,
Below is our basic procedure for gold-labeling. Like Jan said the NaCl concentration matters. We tend to use a high salt content in the buffer.
good luck with your labeling,
Beth

GOLD LABELING PROTOCOL
Sections must be on gold or gold-gilded grids.

Use a petri dish to create a moist chamber - wet filter paper with H2O (to keep moisture level high) then put a piece of parafilm on top of the moist filter paper. Do controls in a separate petri dish.

1. Place grid on a drop of KPBS (potassium phosphate buffered saline, 0.1M KPB and 0.5M NaCl, pH 7.2) - hydrate 5-10 minutes.

2. Next drop - 3% skim milk ((0.03g non-fat milk in 1 ml buffer), for
1 hour. Prepared fresh and centrifuged for a few seconds before use.

3. Next drop - KPBS - 5 minutes.

4. 1° Ab - dilution of your choice (usually 1:20) - 1 hour or more (centrifuge briefly before use). For a control = OMIT the primary antibody.

5. Rinse in buffer (use squeeze bottle), remove excess H2O with a filter paper.

6. 2° Ab - dilution of your choice (usually 1:50), 1 hr (centrifuge briefly before use).

7. Rinse for 30 sec in buffer (use squeeze bottle).

8. Rinse for 30 sec in dH2O (use squeeze bottle).

9. Post stain with uranyl acetate and lead citrate.

Variation:
Use less salt in the buffer or different blocking agent or longer incubation times or different dilutions of primary and/or secondary antibodies.

Make Stock Buffer:

A) Potassium phosphate mono (KH2PO4) 1M - 6.8 g/50 ml ddH2O.

B) Potassium phosphate dibasic (K2HPO4) 1M - 8.71g/50 ml ddH2O

Use 1.6 ml of A + 8.4 ml of B = 10 ml
Then add 90 ml dd H2O = 100 ml of stock buffer.

Put 14.61 g of NaCl in 450 ml of dd H2O* and stir. Then add 50 ml of stock buffer = 500 ml of 0.1 M KPBS in 0.5 M NaCl and stir.


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30, 33 -- From: "Phillips, Thomas E." {PhillipsT-at-missouri.edu}
30, 33 -- To: "beth-at-plantbio.uga.edu" {beth-at-plantbio.uga.edu} ,
30, 33 -- "leunissen-at-aurion.nl"
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30, 33 -- "microscopy-at-microscopy.com" {microscopy-at-microscopy.com}
30, 33 -- Subject: RE: [Microscopy] immunogold labeling of chitosan
30, 33 -- Thread-Topic: [Microscopy] immunogold labeling of chitosan
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